Psyllid ID: psy17422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
Protein Sequence
LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP
Secondary Structure (PSIPRED)
cccHHHHHHHHcccEEEEcccccHHHHHHHHHcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccccccccccccccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEccccEEEEcccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEEccHHHHHHccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccEEEEccccHHHHHHHHcccccccEEEEEccccccHHHccccEEEccccccHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccEEEEEEcccccHHHHHHHEEcccccccHHHHHHHHHHHHHcccccccEEcccHHHHHHccccHccccEEEEEccccHHHHHHHHHHHHHccccEEEEEEEcEEEEEEEEEccccEEcccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHEEEEcccccccccccccHHHHHHHccHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEccccEEEcccccccHcccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
LWGDHGQAALESARICLINATGLGTEILKSlvlpgvgsftiidgekiseqdlgtnffldvdSIGKSRAEVATQLLLElnpdcqgdfvdenpqvlmandpnffqSFHMVistncpilslpsffldvdsIGKSRAEVATQLLLElnpdcqgdfvdenpqvlmandpnffQSFHMVIstnlpettLIELSKTLWslnipllacrsygfigsirlqisehtiieshpdntnpdlrldkpwpsliqyvdsidldslevkdhmhiPYLVILYKYLKLWQsqnntqdlpknyKEKQNLRELIRSGirkdengiplseENFEEAMKAVNFAlipttvpssvarirkdengiplseENFEEAMKAVNFAlipttvpssvasilndnacvnltsksePFWILAKAVKDFVdnegngnlplrgslpdmtaDTTRYIALQQLYRDQAGRDADVIYRRAQQLLHqlgqpssaiTEAQVKLFCRNasfihvnesKLVLKLCDfgsaswsheneitpyLVSRFYRAP
Flexible Loop (DISEMBL)
LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGekiseqdlGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNtqdlpknykekQNLRELIrsgirkdengiPLSEENFEEAMKAVNFALIpttvpssvariRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGngnlplrgslpdmTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSaswsheneitpylvsrfyrap
Low Complexity Region (SEG)
LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP
Disordered region (IsUnstruct)
*********LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIES*******DLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQS******************************************MKAVNFALIPTTVPS*V****************FEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFY***
Disordered Region (DISOPRED)
LWGDHG*AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRS*************ENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQ******AITEAQVKLFCRNASFIHVNESKLVLK************NEITPYLVSRFYRAP
Disordered Region (DISEMBL)
********ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP
Disordered Region (DISPRO)
LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	512	2.2.26 [Sep-21-2011]
Q6NTW6	533	NEDD8-activating enzyme E	N/A	N/A	0.683	0.656	0.462	2e-98
Q7SXP2	533	NEDD8-activating enzyme E	yes	N/A	0.675	0.649	0.444	8e-95
Q13564	534	NEDD8-activating enzyme E	yes	N/A	0.625	0.599	0.463	3e-93
Q9Z1A5	534	NEDD8-activating enzyme E	yes	N/A	0.625	0.599	0.463	2e-92
Q8VBW6	534	NEDD8-activating enzyme E	yes	N/A	0.685	0.657	0.429	4e-92
Q5ZIE6	535	NEDD8-activating enzyme E	yes	N/A	0.625	0.598	0.458	7e-92
Q4R3L6	510	NEDD8-activating enzyme E	N/A	N/A	0.570	0.572	0.448	2e-82
Q9VTE9	524	NEDD8-activating enzyme E	yes	N/A	0.597	0.583	0.444	2e-80
P42744	540	NEDD8-activating enzyme E	no	N/A	0.656	0.622	0.341	2e-59
Q54JM3	520	NEDD8-activating enzyme E	yes	N/A	0.710	0.7	0.299	4e-52

>sp|Q6NTW6|ULA1_XENLA NEDD8-activating enzyme E1 regulatory subunit OS=Xenopus laevis GN=nae1 PE=2 SV=1

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/396 (46%), Positives = 254/396 (64%), Gaps = 46/396 (11%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL  +SIGK+RA+ + +LL ELN D  G+FV E+P+ L+  DP+FF  F MVIST LP
Sbjct: 72  NFFLQKESIGKNRAQTSMELLQELNDDVTGNFVPESPEQLLDKDPSFFCKFTMVISTQLP 131

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+TL+ L++TLW  NIPLL CR+YGF+G +R+ + EHT+IESHPDN   DLRLD+P+P L
Sbjct: 132 ESTLLRLAETLWDSNIPLLVCRAYGFVGYMRIIVKEHTVIESHPDNALEDLRLDQPFPEL 191

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++ S DLD +E KDH H P+++++ KYL  W+S+N  Q +PK+YKEK++ R+LIR GI
Sbjct: 192 REHLQSYDLDHMERKDHSHTPWIIVVAKYLDKWRSENGGQ-MPKSYKEKESFRDLIRQGI 250

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG+P  EENFEEA+K VN AL  T V S                            
Sbjct: 251 LKNENGVPEDEENFEEAIKNVNTALNITKVSS---------------------------- 282

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    SV  ILND+ C NLT +S  FWILA+AVK+F+  EG GNLPLRG++PDM A
Sbjct: 283 ---------SVEEILNDDRCTNLTHQSTSFWILARAVKEFMAMEGKGNLPLRGTIPDMIA 333

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           D+ ++I LQ +YR++A +DA  +     +LL  +G+P  +I+E  ++LFCRN +F+ V  
Sbjct: 334 DSDKFIKLQNIYREKAKKDASAVESCVSKLLQSVGRPPESISERDIRLFCRNCAFLRVVR 393

Query: 480 SKLV--------LKLCDFGSASWSHENEITPYLVSR 507
            + +         K  D  S   + +NEI  YL+ R
Sbjct: 394 CRSLEEEYGLDTAKKDDIVSLMENPDNEIVLYLMLR 429

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.
Xenopus laevis (taxid: 8355)

>sp|Q7SXP2|ULA1_DANRE NEDD8-activating enzyme E1 regulatory subunit OS=Danio rerio GN=nae1 PE=2 SV=2

 Score =  348 bits (892), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 243/387 (62%), Gaps = 41/387 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   +IGK+RA+ AT+LL ELN D  G+FV+E+P  L+ ND  FF  F +VI+  LP
Sbjct: 72  NFFLSSSAIGKNRAQAATELLQELNSDVSGNFVEESPDKLLDNDCEFFHRFSLVIAVQLP 131

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L   LW   +P L CR+YG IG +RL + EHT++ESHPDN   DLRLD+P+  L
Sbjct: 132 ESTCLRLGAVLWEAGVPFLVCRTYGLIGYMRLIVKEHTVVESHPDNALEDLRLDQPFTEL 191

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++V+S DLD++E KDH H P+++++ +YL+ W ++NN+Q LPKNYKEK+  R+L+R GI
Sbjct: 192 KRHVESYDLDNMEKKDHSHTPWIIVVARYLEKWYNENNSQ-LPKNYKEKEAFRQLLREGI 250

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG    EENFEEA+K VN AL P                                 
Sbjct: 251 LKNENGGLEDEENFEEAIKNVNTALNP--------------------------------- 277

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
               T + S    I N   C N+TS+S  FW++A  V+DFV NEGNGNLP+RGS+PDM A
Sbjct: 278 ----TKISSGTQDIFNAEQCENITSQSSSFWVMAHGVRDFVQNEGNGNLPVRGSIPDMIA 333

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           D+ ++I LQ +YRD+A RDA V+ +  + LL  +G+   +I+E ++KLFC+NA+F+ V  
Sbjct: 334 DSDKFIKLQNVYRDKAMRDAAVVSKHVEMLLQSVGKTPESISEQEIKLFCKNAAFLRVVR 393

Query: 480 SKLVLKLCDFGSASWSHENEITPYLVS 506
            +    L D  S    +++EIT  + S
Sbjct: 394 CR---SLADEYSVDTFNKDEITSCMDS 417

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Danio rerio (taxid: 7955)

>sp|Q13564|ULA1_HUMAN NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1

 Score =  342 bits (878), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 230/358 (64%), Gaps = 38/358 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct: 73  NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 132

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 133 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct: 193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 251

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +PS                            
Sbjct: 252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPS---------------------------- 283

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 284 ---------SIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 334

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V
Sbjct: 335 DSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV 392

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Homo sapiens (taxid: 9606)

>sp|Q9Z1A5|ULA1_RAT NEDD8-activating enzyme E1 regulatory subunit OS=Rattus norvegicus GN=Nae1 PE=1 SV=1

 Score =  340 bits (871), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 230/358 (64%), Gaps = 38/358 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RA+ A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T L 
Sbjct: 73  NFFLQKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLL 132

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK+YKEK++ RELIR GI
Sbjct: 193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKSYKEKEDFRELIRQGI 251

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +PS                            
Sbjct: 252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPS---------------------------- 283

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 284 ---------SIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 334

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           D+ +YI LQ +YR++A +DA  +     +LL   GQ   +I+E ++KL C N++F+ V
Sbjct: 335 DSNKYIKLQNVYREKAKKDAAAVGNHVAKLLQSCGQAPESISEKELKLLCSNSAFLRV 392

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Rattus norvegicus (taxid: 10116)

>sp|Q8VBW6|ULA1_MOUSE NEDD8-activating enzyme E1 regulatory subunit OS=Mus musculus GN=Nae1 PE=2 SV=1

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/405 (42%), Positives = 252/405 (62%), Gaps = 54/405 (13%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RA+ A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T L 
Sbjct: 73  NFFLQKSSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLL 132

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++ S DLD +E KDH H P++VI+ KYL  W ++ N + +PK+YKEK++ R+LIR GI
Sbjct: 193 REHLQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYNETNGR-IPKSYKEKEDFRDLIRQGI 251

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +PS                            
Sbjct: 252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPS---------------------------- 283

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 284 ---------SIEDIFNDDRCINITKQTPTFWILARALKEFVAKEGQGNLPVRGTIPDMIA 334

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V  
Sbjct: 335 DSNKYIKLQNVYREKAKKDAAAVGNHVAKLLQSVGQAPESISEKELKLLCSNSAFLRVVR 394

Query: 480 SKLVLKLCDFG----------SASWSHENEITPYL----VSRFYR 510
            + + +  ++G          S+  + +NEI  YL    V RF++
Sbjct: 395 CRSLAE--EYGLDTVNKDEIISSMDNPDNEIVLYLMLRAVDRFHK 437

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Mus musculus (taxid: 10090)

>sp|Q5ZIE6|ULA1_CHICK NEDD8-activating enzyme E1 regulatory subunit OS=Gallus gallus GN=NAE1 PE=2 SV=1

 Score =  338 bits (867), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 164/358 (45%), Positives = 233/358 (65%), Gaps = 38/358 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL    IG+SRA+ AT+LL ELN D  G+FV+E+P+ L+ NDP+FF  F++V++T L 
Sbjct: 74  NFFLQKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLS 133

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T++ L++ LW+ NIPLL CR+YG +G +R+ I EH ++ESHPDN   DLRLDK +P L
Sbjct: 134 ESTVLRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLDKQFPEL 193

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++ S DLD ++ KDH H P++VI+ KYL  W ++ + Q LPK+YKEK+  R+LIR GI
Sbjct: 194 TEHIQSYDLDHMDKKDHSHTPWIVIVAKYLTKWFNEKSDQ-LPKSYKEKEAFRQLIRQGI 252

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +P  +                          
Sbjct: 253 LKNENGTPEDEENFEEAIKNVNTALNTTKIPRCI-------------------------- 286

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                        I ND+ CVNLT +S  FWIL +AVK+FV NEG G LP+RG++PDM A
Sbjct: 287 -----------EEIFNDDCCVNLTEQSPSFWILVRAVKEFVANEGQGCLPVRGTIPDMIA 335

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           D++++I LQ +YR++A RD   +   A +LL  LG+   +I+E ++KL C N++F+ V
Sbjct: 336 DSSKFIKLQNVYREKAKRDIAAVGNHAAKLLQSLGKAPESISERELKLLCSNSAFLRV 393

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M.

Gallus gallus (taxid: 9031)

>sp|Q4R3L6|ULA1_MACFA NEDD8-activating enzyme E1 regulatory subunit OS=Macaca fascicularis GN=NAE1 PE=2 SV=1

 Score =  307 bits (786), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 210/330 (63%), Gaps = 38/330 (11%)

Query: 148 QGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIG 207
           Q   + ++P+ L+ NDP+FF  F +V++T LPE+TL+ L+  LW+  IPLL CR+YG +G
Sbjct: 77  QRSSIGKSPENLLDNDPSFFCRFTVVVATQLPESTLLRLADVLWNSQIPLLICRTYGLVG 136

Query: 208 SIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYK 267
            +R+ I EH +IESHPDN   DLRLDKP+P L ++  S DLD +E KDH H P++VI+ K
Sbjct: 137 YMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAK 196

Query: 268 YLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPT 327
           YL  W S+ N + +PK YKEK++ R+LIR GI K+ENG P  EENFEEA+K VN AL  T
Sbjct: 197 YLAQWYSETNGR-IPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT 255

Query: 328 TVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSE 387
            +PS                                     S+  I ND+ C+N+T ++ 
Sbjct: 256 QIPS-------------------------------------SIEDIFNDDRCINITKQTP 278

Query: 388 PFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQ 447
            FWILA+A+K+FV  EG GNLP+RG++PDM AD+ +YI LQ +YR++A +DA  +     
Sbjct: 279 SFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVA 338

Query: 448 QLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           +LL  +GQ   +I+E ++KL C N++F+ V
Sbjct: 339 KLLQSIGQAPESISEKELKLLCSNSAFLRV 368

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Macaca fascicularis (taxid: 9541)

>sp|Q9VTE9|ULA1_DROME NEDD8-activating enzyme E1 regulatory subunit OS=Drosophila melanogaster GN=APP-BP1 PE=1 SV=1

 Score =  300 bits (768), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 218/360 (60%), Gaps = 54/360 (15%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFLD   +GKS+A    QLL ELNPD  GD+VDE+   L+AN PNFF SF +VI++NL 
Sbjct: 78  NFFLDSSYLGKSKALACMQLLQELNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLN 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E TL+ L++ LW LN+PL+ CRS G +G+IRLQI EH I+E+HPDN   DLRL+ P+ +L
Sbjct: 138 EQTLLLLAERLWELNVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRLEHPFDAL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQ--NNTQDLPKNYKEKQNLRELIRS 297
            +++D  ++ S        +P+L++L+KYL +WQ Q  + TQ  P+NYKEK  L+E IR 
Sbjct: 198 REHLDGTEVTS-------KVPWLLVLHKYLNVWQKQQADGTQT-PRNYKEKNQLKETIRE 249

Query: 298 GIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAV 357
            ++ D       EEN+EEA+KAVN A     VP                           
Sbjct: 250 EMKAD-------EENYEEAIKAVNTAFGAGQVP--------------------------- 275

Query: 358 NFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDM 417
                      S+ +I  D+AC  L  KS  FWI+AKA+K FV +E  G+LPL G LPDM
Sbjct: 276 ----------KSLKAIFEDDACEQLNKKSNVFWIMAKALKHFVIHENEGHLPLPGVLPDM 325

Query: 418 TADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           TA+T  YIALQ +YR QA +DAD +Y + Q+ L QL  P+ +I E  V+L C+ A+ + V
Sbjct: 326 TANTDSYIALQHIYRQQALQDADQVYHKCQEYLKQLALPADSIDERSVRLICKEAAGLAV 385

Regulatory subunit of the dimeric Uba3-Ula1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-Uba3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of Ubc12 (By similarity). Appl and APP-BP1 interact antagonistically during development.

Drosophila melanogaster (taxid: 7227)

>sp|P42744|ULA1_ARATH NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/395 (34%), Positives = 209/395 (52%), Gaps = 59/395 (14%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +F +D  S+G+S+A+     L ELN      F++ENP  L+  +P+FF  F +VI+T L 
Sbjct: 84  NFMVDAKSVGQSKAKSVCAFLQELNDSVNAKFIEENPDTLITTNPSFFSQFTLVIATQLV 143

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E ++++L +     N+ L+  RSYG  G +R+ + EH II+S PD+   DLRL+ PWP L
Sbjct: 144 EDSMLKLDRICRDANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPEL 203

Query: 240 IQYVDSIDLDSLE-VKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSG 298
             +V++IDL+  E    H HIPY+VIL K  + W +Q+++ +LP   +EK+  ++L++S 
Sbjct: 204 KSFVETIDLNVSEPAAAHKHIPYVVILVKMAEEW-AQSHSGNLPSTREEKKEFKDLVKSK 262

Query: 299 IRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVN 358
           +      +   E+N++EA++A                                 A K   
Sbjct: 263 M------VSTDEDNYKEAIEA---------------------------------AFKV-- 281

Query: 359 FALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT 418
           FA  P  + S V  ++ND +C  + S S  FW++  A+K+FV NEG G  PL GS+PDMT
Sbjct: 282 FA--PRGISSEVQKLIND-SCAEVNSNSSAFWVMVAALKEFVLNEGGGEAPLEGSIPDMT 338

Query: 419 ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVN 478
           + T  YI LQ++Y  +A  D  VI  R + +L ++G+  S+I +  +K FC+NA      
Sbjct: 339 SSTEHYINLQKIYLAKAEADFLVIEERVKNILKKIGRDPSSIPKPTIKSFCKNAR----- 393

Query: 479 ESKLVLKLCDFGSASWSHEN----EITPYLVSRFY 509
                LKLC +        N    EI  YL    Y
Sbjct: 394 ----KLKLCRYRMVEDEFRNPSVTEIQKYLADEDY 424

Regulatory subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1. Plays an important role in auxin response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54JM3|ULA1_DICDI NEDD8-activating enzyme E1 regulatory subunit OS=Dictyostelium discoideum GN=nae1 PE=3 SV=1

 Score =  206 bits (524), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 231/477 (48%), Gaps = 113/477 (23%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWG+ GQ+ LE + I L+N +  GTE LK+LVLPG+GSFT++D +K++E DLG NFF++ 
Sbjct: 17  LWGEDGQSKLERSHILLLNGSATGTETLKNLVLPGIGSFTVVDNKKVTESDLGNNFFVER 76

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPS 120
            S+GK RA V  +LL ELN   +G  V+E P  L+ N+ +FF+ F +V++          
Sbjct: 77  SSLGKPRATVVCELLRELNDRVKGFSVEECPIHLINNNISFFKDFSLVVAN--------- 127

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
                         ++ + LL L+        ++N  +L+ N   +    ++ IST  PE
Sbjct: 128 -------------RLSEEALLTLSQ----YLTEQNIPLLITNSYGYIG--YLRIST--PE 166

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
             +IE                                   S PD+   DLR+  P+  L+
Sbjct: 167 HQIIE-----------------------------------SKPDDPIDDLRIYNPFKQLV 191

Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
              D+++LD L  + H H+PY+++L K+LK W+S +N + +P+   EK   ++   S   
Sbjct: 192 DMADALELDKLNTQQHSHVPYVLLLIKFLKEWRSTHNDK-MPETRAEKDEFKKFFNS--- 247

Query: 301 KDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFA 360
              +     E NF E ++ +   + P  VP  V  + KD                     
Sbjct: 248 ---HSWSADEMNFVEGIQNLLKYIQPPRVPGDVQNLLKD--------------------- 283

Query: 361 LIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD 420
             P T               N+T  S+ FW+L  A+K+F+ N  N  LPL G++PDMT++
Sbjct: 284 --PKT---------------NITENSDDFWVLVAALKEFMTNNDN-TLPLHGNVPDMTSE 325

Query: 421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           T  +I LQ+ Y+++A  D         Q+L ++G+  S+I+   VK FC+N  F+++
Sbjct: 326 THNFIQLQKGYQEKALADLSEFSGYVDQILTKVGK--SSISSDLVKKFCKNTRFLNI 380

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
242023180	539	NEDD8-activating enzyme E1 regulatory su	0.634	0.602	0.524	1e-111
307168563	538	NEDD8-activating enzyme E1 regulatory su	0.636	0.605	0.528	1e-110
156393945	534	predicted protein [Nematostella vectensi	0.726	0.696	0.425	1e-108
322801597	538	hypothetical protein SINV_00190 [Solenop	0.634	0.604	0.527	1e-108
383857962	538	PREDICTED: NEDD8-activating enzyme E1 re	0.623	0.592	0.522	1e-105
340729158	538	PREDICTED: NEDD8-activating enzyme E1 re	0.634	0.604	0.521	1e-105
156538611	538	PREDICTED: NEDD8-activating enzyme E1 re	0.634	0.604	0.508	1e-105
380013861	538	PREDICTED: NEDD8-activating enzyme E1 re	0.634	0.604	0.519	1e-104
307213330	538	NEDD8-activating enzyme E1 regulatory su	0.634	0.604	0.505	1e-104
350401549	538	PREDICTED: NEDD8-activating enzyme E1 re	0.634	0.604	0.516	1e-104

>gi|242023180|ref|XP_002432014.1| NEDD8-activating enzyme E1 regulatory subunit, putative [Pediculus humanus corporis] gi|212517365|gb|EEB19276.1| NEDD8-activating enzyme E1 regulatory subunit, putative [Pediculus humanus corporis]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/368 (52%), Positives = 265/368 (72%), Gaps = 43/368 (11%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL  DS GKSRAEV  QLL+ELNPD  GD++DE+ + ++ N+P F  +F ++++T L 
Sbjct: 78  NFFLLADSCGKSRAEVTNQLLVELNPDVHGDYIDEDIEQVLENNPEFLNNFSIIVATELK 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E TL+ELS  LW L+IP L C+SYGF+G IR Q+ EHT+IESHPDN   DLRLDKP+P+L
Sbjct: 138 EKTLMELSSKLWELDIPFLNCKSYGFLGYIRTQVKEHTVIESHPDNLPQDLRLDKPFPAL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
           I+YV+S++L+ +E+KDH H+PYLVIL+KYL++W+ ++  +D P+N+KEK++L+E+IRSGI
Sbjct: 198 IEYVNSVNLEEMELKDHAHVPYLVILFKYLEIWK-KSTGKDFPRNFKEKESLKEMIRSGI 256

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K++ G+P  EENFEEA++ +N A+IPT VPSS+ +                        
Sbjct: 257 LKNDEGVPEVEENFEEAIRGINSAVIPTIVPSSIKQ------------------------ 292

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                        IL+D+AC+NLTSKS+PFW+LAKA++DF++NEGNG LPLRGSLPDMTA
Sbjct: 293 -------------ILDDDACINLTSKSKPFWVLAKALRDFIENEGNGCLPLRGSLPDMTA 339

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           +T  YIALQQ+Y  QA +DAD+++RR QQLL +L Q    I+EA  KLFC++AS     E
Sbjct: 340 NTFSYIALQQIYHTQAAKDADIVFRRVQQLLRELNQSPDTISEADTKLFCKHAS-----E 394

Query: 480 SKLVLKLC 487
            +LV   C
Sbjct: 395 LQLVRGTC 402

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168563|gb|EFN61621.1| NEDD8-activating enzyme E1 regulatory subunit [Camponotus floridanus]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/365 (52%), Positives = 258/365 (70%), Gaps = 39/365 (10%)

Query: 119 PSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNL 178
           P+FFL+ DS+GKSRA+VAT++LLELNPD  GD++DE P+ +++N P+FF SF +V++T L
Sbjct: 77  PNFFLEADSVGKSRAQVATEMLLELNPDVTGDYIDEEPEQILSNSPDFFNSFTVVVATAL 136

Query: 179 PETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPS 238
            E TL+ LSK LW L+IPL+ CRS GFI  +R+QI EHT++E+HPDN  PDLRLD+P+ S
Sbjct: 137 TEKTLVLLSKRLWELDIPLIVCRSIGFIAYMRIQIKEHTVVETHPDNETPDLRLDRPFDS 196

Query: 239 LIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSG 298
           L +++DSI+LD +  KDH H+PYL+ILYKYL+ W  ++ T  LPK YK+KQ LR++I+SG
Sbjct: 197 LKKHLDSINLDEMGFKDHCHVPYLIILYKYLEKWILEHRT--LPKLYKDKQQLRDMIKSG 254

Query: 299 IRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVN 358
           IR+DE+    SEENFEEAMKAVN  +  + +P                            
Sbjct: 255 IRRDEHDSSNSEENFEEAMKAVNTCIRASEIP---------------------------- 286

Query: 359 FALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT 418
                     ++ +ILND+ C+NLT+KS  FWI+AKAV+DFVDNEG G LPL+G+LPDMT
Sbjct: 287 ---------ENIKNILNDDRCINLTAKSSSFWIIAKAVRDFVDNEGKGLLPLKGTLPDMT 337

Query: 419 ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVN 478
           ADT +YI LQQ+Y  QA  DA+ ++RR  QLL QLG+PS +I E  VKLFCR+AS IHV 
Sbjct: 338 ADTEKYITLQQIYYKQASADAEAVWRRTLQLLRQLGRPSDSILEKDVKLFCRHASNIHVE 397

Query: 479 ESKLV 483
           +   +
Sbjct: 398 KGSCI 402

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156393945|ref|XP_001636587.1| predicted protein [Nematostella vectensis] gi|156223692|gb|EDO44524.1| predicted protein [Nematostella vectensis]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/475 (42%), Positives = 291/475 (61%), Gaps = 103/475 (21%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWGDHGQAALE A+ICLINA+  GTEILK+L+LPG+G FTI+DGEK++ +D+G NFFL+ 
Sbjct: 18  LWGDHGQAALEQAKICLINASATGTEILKNLILPGIGLFTIVDGEKVTGEDVGNNFFLNK 77

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPS 120
           + IG+SRAE AT+LLLELN D  G+F++E+P+ L+ +  +FF+ F +VI+T         
Sbjct: 78  EHIGRSRAECATELLLELNSDVSGEFIEESPEELLTHKQDFFKPFSVVIAT--------- 128

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
                        +++ ++LL+L                           H++ S  +P 
Sbjct: 129 -------------QLSEEILLKLA--------------------------HVLWSDKVP- 148

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
                           LL CRSYGFIG +RL + EH IIESHPD+   DLRLD+P+P+L 
Sbjct: 149 ----------------LLVCRSYGFIGYMRLVLEEHPIIESHPDSAFEDLRLDRPFPTLQ 192

Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
           QYVDS+DL+S+   DH H PY+VIL KYL+ W+ +++ +  P+NYKEK   ++++R GI 
Sbjct: 193 QYVDSMDLESMSKLDHSHTPYVVILLKYLQRWKEEHDNKP-PQNYKEKDAFKKIVRKGIL 251

Query: 301 KDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFA 360
            +E+GIP  EENF+EA++AVN AL+PT +P                              
Sbjct: 252 INEHGIPEEEENFDEAIRAVNMALVPTKIP------------------------------ 281

Query: 361 LIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD 420
                    V++I +  +C N+T  S  FWI+AKAVK+FV+NEG G LP+RGS+PDMTAD
Sbjct: 282 -------GEVSNIFSQESCCNITEMSSSFWIIAKAVKEFVENEGQGALPVRGSIPDMTAD 334

Query: 421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFI 475
           + RYI LQ +Y+DQA +D   + +R  ++L  +G+ +  I E +++LFC+NA+F+
Sbjct: 335 SKRYIQLQNVYQDQAKKDVVAVTQRVHRILDTIGKSADCIPEQEIRLFCKNAAFL 389

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|322801597|gb|EFZ22238.1| hypothetical protein SINV_00190 [Solenopsis invicta]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/364 (52%), Positives = 256/364 (70%), Gaps = 39/364 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL+ DS+GKSRA+VATQ+LLE+NPD  GD++DE P+ +++N P+FF SF +V++T L 
Sbjct: 78  NFFLEADSVGKSRAQVATQMLLEMNPDVTGDYIDEEPEQILSNSPDFFNSFTVVVATALT 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E TLI LSK LW L+IPL+ C+S GFI  +R+QI EHT++E+HPDN   DLRLD+P+ SL
Sbjct: 138 EKTLILLSKRLWELSIPLIVCKSLGFIAYMRIQIKEHTVVETHPDNETQDLRLDRPFDSL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++DSI+LD +  KDH H+PYL+ILYKYL+ W S++ T  LPK YKEKQ LR +I +G+
Sbjct: 198 KKHIDSINLDEMSFKDHCHVPYLIILYKYLEKWVSEHGT--LPKTYKEKQQLRNVIENGM 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           R+DE+    SEENFEEAMKAVN                                 K +  
Sbjct: 256 RRDEHDSSNSEENFEEAMKAVN---------------------------------KCIRM 282

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
           + IP     +V +ILND+ CVNLT+KS  FWI+AKAV+DF+DNEG G LPL+G+LPDMTA
Sbjct: 283 SDIP----DNVINILNDDRCVNLTAKSSSFWIIAKAVRDFIDNEGKGLLPLKGTLPDMTA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           DT +YI LQQ+Y  QA  DA+ ++RR  QLL QLG+PS +I+E  VKLFCR+ + IHV +
Sbjct: 339 DTEKYITLQQIYHKQASADAEAVWRRTLQLLRQLGRPSDSISEKDVKLFCRHVANIHVEK 398

Query: 480 SKLV 483
              +
Sbjct: 399 GSCI 402

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857962|ref|XP_003704472.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Megachile rotundata]

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/358 (52%), Positives = 250/358 (69%), Gaps = 39/358 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL+ DS+GKSRA+V+T++LLELNPD +GD++DE P+ L+ N P+FF +F +V++T+L 
Sbjct: 78  NFFLEADSVGKSRAQVSTEMLLELNPDVRGDYIDEEPEQLLYNSPDFFNNFTVVVATSLT 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E +LI LS+ LW LNIPL+ CRS GFI  +R+Q+ EH IIE+HPDN  PDLRLD+P+ +L
Sbjct: 138 EKSLILLSERLWDLNIPLIVCRSIGFIAYMRIQVKEHVIIETHPDNETPDLRLDRPFEAL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++DSI+LD +  KDH H+PYLVILYK+L+ W        LPK YKEK  L+E+I+ GI
Sbjct: 198 KRHLDSINLDEMSFKDHSHVPYLVILYKFLEKWILDKG--QLPKTYKEKHQLKEMIKKGI 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           R+++N    SEENFEEA+KAVN  + PT +P+S                           
Sbjct: 256 RREDNDTANSEENFEEAIKAVNTCVGPTEIPNS--------------------------- 288

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                     + +ILND+ CVNLT+KS  FWI+AKAVKDF+ NEG G LPL+G+LPDM A
Sbjct: 289 ----------IMNILNDDQCVNLTAKSSSFWIIAKAVKDFIKNEGAGLLPLKGTLPDMIA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           DT +YI LQQ+Y  QA  D + ++RR  QLL QLG+PS +I+E  VKLFCR+AS IHV
Sbjct: 339 DTEKYITLQQIYYKQAAADVEAVWRRTLQLLQQLGKPSDSISERDVKLFCRHASNIHV 396

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729158|ref|XP_003402875.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Bombus terrestris]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/364 (52%), Positives = 250/364 (68%), Gaps = 39/364 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL+ D IGKSRA+VATQ+LLELN D +GD++DE P+ ++ N P+FF +F +V++T+L 
Sbjct: 78  NFFLEADCIGKSRAQVATQMLLELNSDVRGDYIDEEPEEILCNSPDFFNNFTVVVATSLV 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E +LI LS+ LW LNIPL+ CRS GFI  +R+QI EHT+IE+HPDN  PDLRLDKP+ +L
Sbjct: 138 EKSLILLSQRLWELNIPLIVCRSIGFIAYMRIQIKEHTVIETHPDNETPDLRLDKPFETL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++DSI+LD L  KDH HIPYLVILYK+L+ W   N   +LPK YKEK  L+E+I+ G+
Sbjct: 198 KKHLDSINLDELSFKDHSHIPYLVILYKFLENWILNNG--ELPKTYKEKSQLKEMIKEGM 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           R+DEN    SEENFEEA+KAVN  +  T +P +                           
Sbjct: 256 RRDENDTANSEENFEEAIKAVNTCIGCTEIPEN--------------------------- 288

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                     V +ILND+ C+NLT+KS  FWI+AKA+KDFV+NEG G LPL+G+LPDMTA
Sbjct: 289 ----------VMNILNDDKCINLTAKSSSFWIIAKAIKDFVENEGGGLLPLKGTLPDMTA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           DT +YI  QQ+Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+A  IHV  
Sbjct: 339 DTEKYITFQQIYHKQAIVDAEAVWRRTLQLLRQLGKSSDSISERDVKLFCRHALNIHVQR 398

Query: 480 SKLV 483
              +
Sbjct: 399 GTCI 402

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538611|ref|XP_001607571.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Nasonia vitripennis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/364 (50%), Positives = 248/364 (68%), Gaps = 39/364 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFLD DS GKSRA+VATQLLLELN D +GD++DE P+ ++ N P+FF +F +VI+  +P
Sbjct: 78  NFFLDADSAGKSRAQVATQLLLELNSDVRGDYIDEGPEQILNNSPDFFNNFTIVIACAMP 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E +LI LSK LW L+IPL+ CRS GFIG  R+QI EHT++E+HPDN  PDLRLDKP+  L
Sbjct: 138 EKSLIILSKKLWELDIPLIVCRSIGFIGCARVQIKEHTVVETHPDNEIPDLRLDKPFEGL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
             + DSIDL+++++KDH H PY+ +LYKYL+ W   +  QDLPK   EK+  +E+IR GI
Sbjct: 198 KNHFDSIDLEAMDLKDHSHTPYVTVLYKYLQKWLETH--QDLPKTRVEKEEFKEMIRDGI 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           RKDENG+P+ EENFEEA++AVN  + PTTV  +V+                         
Sbjct: 256 RKDENGVPIGEENFEEAIRAVNTCIRPTTVSGTVSE------------------------ 291

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                        +LNDN+C+NL SKS  FWI+AKA++DF+++EG G LPL G+LPDM A
Sbjct: 292 -------------VLNDNSCINLNSKSSSFWIIAKAIRDFMEHEGGGLLPLTGALPDMVA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           DT ++I+LQQ+Y  QA  D + ++RR   LL QLG+PS +I E  VKLFCR+AS + V  
Sbjct: 339 DTEKFISLQQVYHKQAVADVEAVWRRTLMLLRQLGKPSDSIPEKDVKLFCRHASELCVQR 398

Query: 480 SKLV 483
              +
Sbjct: 399 GTCI 402

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013861|ref|XP_003690964.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Apis florea]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/364 (51%), Positives = 251/364 (68%), Gaps = 39/364 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL+ DS+GKSRA+VATQ+LLELN D +GD++DE P+ ++ N P+FF +F +V++T+L 
Sbjct: 78  NFFLEADSVGKSRAQVATQMLLELNSDVRGDYIDEEPEQILCNSPDFFNNFTVVVATSLS 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E +LI LS+ LW LNIPL+ CRS GFI  +R+Q+ EHT+IE+HPDN  PDLRLDKP+  L
Sbjct: 138 EKSLILLSQRLWELNIPLIVCRSIGFIAYMRIQVKEHTVIETHPDNEIPDLRLDKPFEIL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++ DSI+LD L  K+H HIPYLVILYK+L+ W      +DLPK YKEK  L+E+I+  +
Sbjct: 198 KKHFDSINLDELSFKNHSHIPYLVILYKFLEKWTLHK--KDLPKTYKEKHQLKEMIKEAM 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           R+DEN    SEENFEEA+KAVN  +  T +P                             
Sbjct: 256 RRDENDTANSEENFEEAIKAVNTCVGHTEIP----------------------------- 286

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    +V +ILND+ C+NLT+KS  FWI+AKAV+DFV+NEG G LPL+G+LPDMTA
Sbjct: 287 --------DNVMNILNDDQCINLTAKSSSFWIIAKAVRDFVENEGAGLLPLKGTLPDMTA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           DT +YI LQQ+Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+AS IHV +
Sbjct: 339 DTEKYITLQQIYYKQAIADAESVWRRTLQLLRQLGKSSDSISERDVKLFCRHASNIHVEK 398

Query: 480 SKLV 483
              +
Sbjct: 399 GTCI 402

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213330|gb|EFN88782.1| NEDD8-activating enzyme E1 regulatory subunit [Harpegnathos saltator]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 253/364 (69%), Gaps = 39/364 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL+ DSIGKSRA+VATQ+LLELN D  GD++DE P+ +++N P+FF +F +V++T+L 
Sbjct: 78  NFFLEADSIGKSRAQVATQMLLELNLDVTGDYIDEEPEEILSNSPDFFNNFTVVVATSLT 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E TLI LS+ LW LNIPL+ CRS GFI  +R+Q+ EHT++ESHPDN   DLRLDKP+ SL
Sbjct: 138 EKTLILLSRRLWELNIPLIVCRSIGFIAYMRIQVKEHTVVESHPDNETLDLRLDKPFDSL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++DSI+LD +  KDH H+PYL+ILYK ++ W  Q+ T  LPK Y +KQ L+++I++ +
Sbjct: 198 KKHLDSINLDEMSFKDHCHVPYLIILYKLVEKWVCQHGT--LPKTYNDKQELKQMIQNDM 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           R+DEN +  SEENFEEA+KAVN A+  + +P                             
Sbjct: 256 RRDENDLLNSEENFEEAIKAVNTAVRSSDIP----------------------------- 286

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                     V +ILND+ C+NLT+KS  FWI+A+AV+DF+DNEG G LPL+G+LPDMTA
Sbjct: 287 --------DHVKNILNDDCCINLTAKSSSFWIIARAVRDFIDNEGGGLLPLKGALPDMTA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           DT +YI LQQ+Y  QA  +A+ ++RR  QLL QLG+PS +I E  VK+FCR+A+ IHV  
Sbjct: 339 DTEKYITLQQIYHKQASAEAEAVWRRTLQLLRQLGRPSDSILEKDVKMFCRHATDIHVER 398

Query: 480 SKLV 483
              +
Sbjct: 399 GSCI 402

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401549|ref|XP_003486188.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Bombus impatiens]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/364 (51%), Positives = 249/364 (68%), Gaps = 39/364 (10%)

Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL+ D IGKSRA+VATQ+LLELN D +GD++DE  + ++ N P+FF +F +V++T+L 
Sbjct: 78  NFFLEADCIGKSRAQVATQMLLELNSDVRGDYIDEELEEILCNSPDFFNNFTVVVATSLV 137

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E +LI LS+ LW LNIPL+ CRS GFI  +R+QI EHT+IE+HPDN  PDLRLDKP+ +L
Sbjct: 138 EKSLILLSQRLWELNIPLIVCRSIGFIAYMRIQIKEHTVIETHPDNETPDLRLDKPFETL 197

Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            +++D+I+LD L  KDH HIPYLVILYK+L+ W   N   +LPK YKEK  L+E+I+ G+
Sbjct: 198 KKHLDTINLDELSFKDHSHIPYLVILYKFLENWILNNG--ELPKTYKEKSQLKEMIKEGM 255

Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
           R+DEN    SEENFEEA+KAVN  +  T +P +V                          
Sbjct: 256 RRDENDTANSEENFEEAIKAVNTCVGCTEIPENV-------------------------- 289

Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                       +ILND+ C+NLT+KS  FWI+AKA+KDFV+NEG G LPL+G+LPDMTA
Sbjct: 290 -----------MNILNDDKCINLTAKSSSFWIIAKAIKDFVENEGGGLLPLKGTLPDMTA 338

Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           DT +YI  QQ+Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+A  IHV  
Sbjct: 339 DTEKYITFQQIYHKQAIVDAEAVWRRTLQLLRQLGKSSDSISERDVKLFCRHALNIHVQR 398

Query: 480 SKLV 483
              +
Sbjct: 399 GTCI 402

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
FB|FBgn0261112	524	APP-BP1 "beta-Amyloid precurso	0.402	0.393	0.484	1.5e-83
ZFIN|ZDB-GENE-040426-1552	533	nae1 "nedd8 activating enzyme	0.421	0.405	0.516	1.2e-58
UNIPROTKB|Q13564	534	NAE1 "NEDD8-activating enzyme	0.445	0.426	0.524	1.6e-61
UNIPROTKB|E2RE24	534	NAE1 "Uncharacterized protein"	0.445	0.426	0.524	6.2e-62
UNIPROTKB|Q5ZIE6	535	NAE1 "NEDD8-activating enzyme	0.447	0.428	0.504	5.5e-61
UNIPROTKB|F1P442	535	NAE1 "NEDD8-activating enzyme	0.447	0.428	0.508	7.9e-62
RGD|619945	534	Nae1 "NEDD8 activating enzyme	0.445	0.426	0.524	5.5e-61
UNIPROTKB|Q9Z1A5	534	Nae1 "NEDD8-activating enzyme	0.445	0.426	0.524	5.5e-61
MGI|MGI:2384561	534	Nae1 "NEDD8 activating enzyme	0.445	0.426	0.515	7.1e-61
UNIPROTKB|E1B8X4	534	NAE1 "Uncharacterized protein"	0.445	0.426	0.519	9e-61

FB|FBgn0261112 APP-BP1 "beta-Amyloid precursor protein binding protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 518 (187.4 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
 Identities = 108/223 (48%), Positives = 150/223 (67%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFLD   +GKS+A    QLL ELNPD  GD+VDE+   L+AN PNFF SF +VI++NL 
Sbjct:    78 NFFLDSSYLGKSKALACMQLLQELNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLN 137

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E TL+ L++ LW LN+PL+ CRS G +G+IRLQI EH I+E+HPDN   DLRL+ P+ +L
Sbjct:   138 EQTLLLLAERLWELNVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRLEHPFDAL 197

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQ--NNTQDLPKNYKEKQNLRELIRS 297
              +++D  ++ S        +P+L++L+KYL +WQ Q  + TQ  P+NYKEK  L+E IR 
Sbjct:   198 REHLDGTEVTS-------KVPWLLVLHKYLNVWQKQQADGTQT-PRNYKEKNQLKETIRE 249

Query:   298 GIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDE 340
              ++ DE       EN+EEA+KAVN A     VP S+  I +D+
Sbjct:   250 EMKADE-------ENYEEAIKAVNTAFGAGQVPKSLKAIFEDD 285

GO:0004839 "ubiquitin activating enzyme activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045116 "protein neddylation" evidence=ISS;IDA;IMP

GO:0019781 "NEDD8 activating enzyme activity" evidence=ISS;IDA

GO:0043234 "protein complex" evidence=IPI

ZFIN|ZDB-GENE-040426-1552 nae1 "nedd8 activating enzyme E1 subunit 1" [Danio rerio (taxid:7955)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 112/217 (51%), Positives = 154/217 (70%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   +IGK+RA+ AT+LL ELN D  G+FV+E+P  L+ ND  FF  F +VI+  LP
Sbjct:    72 NFFLSSSAIGKNRAQAATELLQELNSDVSGNFVEESPDKLLDNDCEFFHRFSLVIAVQLP 131

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+T + L   LW   +P L CR+YG IG +RL + EHT++ESHPDN   DLRLD+P+  L
Sbjct:   132 ESTCLRLGAVLWEAGVPFLVCRTYGLIGYMRLIVKEHTVVESHPDNALEDLRLDQPFTEL 191

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              ++V+S DLD++E KDH H P+++++ +YL+ W ++NN+Q LPKNYKEK+  R+L+R GI
Sbjct:   192 KRHVESYDLDNMEKKDHSHTPWIIVVARYLEKWYNENNSQ-LPKNYKEKEAFRQLLREGI 250

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARI 336
              K+ENG    EENFEEA+K VN AL PT + S    I
Sbjct:   251 LKNENGGLEDEENFEEAIKNVNTALNPTKISSGTQDI 287

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q13564 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 120/229 (52%), Positives = 162/229 (70%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct:    73 NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 132

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct:   133 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct:   193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 251

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
              K+ENG P  EENFEEA+K VN AL  T +PSS+  I  D+  I ++++
Sbjct:   252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQ 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0033314 "mitotic DNA replication checkpoint" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA

GO:0006260 "DNA replication" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

UNIPROTKB|E2RE24 NAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 120/229 (52%), Positives = 165/229 (72%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   SIGK+RA+ A + L ELN D  G+FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct:    73 NFFLQRSSIGKNRAQAAMEFLQELNNDVSGNFVEESPENLLDNDPSFFCRFTIVVATQLP 132

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct:   133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct:   193 REHFQSYDLDRMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 251

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
              K+ENG P  EENFEEA+K VN AL  T +PSS+  I  D++ I ++++
Sbjct:   252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDHCINITKQ 300

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5ZIE6 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Gallus gallus (taxid:9031)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 116/230 (50%), Positives = 166/230 (72%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL    IG+SRA+ AT+LL ELN D  G+FV+E+P+ L+ NDP+FF  F++V++T L 
Sbjct:    74 NFFLQKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLS 133

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+T++ L++ LW+ NIPLL CR+YG +G +R+ I EH ++ESHPDN   DLRLDK +P L
Sbjct:   134 ESTVLRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLDKQFPEL 193

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              +++ S DLD ++ KDH H P++VI+ KYL  W ++ + Q LPK+YKEK+  R+LIR GI
Sbjct:   194 TEHIQSYDLDHMDKKDHSHTPWIVIVAKYLTKWFNEKSDQ-LPKSYKEKEAFRQLIRQGI 252

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEEN 349
              K+ENG P  EENFEEA+K VN AL  T +P  +  I  D+  + L+E++
Sbjct:   253 LKNENGTPEDEENFEEAIKNVNTALNTTKIPRCIEEIFNDDCCVNLTEQS 302

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

UNIPROTKB|F1P442 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Gallus gallus (taxid:9031)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 117/230 (50%), Positives = 167/230 (72%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL    IG+SRA+ AT+LL ELN D  G+FV+E+P+ L+ NDP+FF  F++V++T L 
Sbjct:    74 NFFLQKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLS 133

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+T++ L++ LW+ NIPLL CR+YG +G +R+ I EH ++ESHPDN   DLRLDKP+P L
Sbjct:   134 ESTVLRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLDKPFPEL 193

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              +++ S DLD ++ KDH H P++VI+ KYL  W ++ + Q LPK+YKEK+  R+LIR GI
Sbjct:   194 TEHIQSYDLDHMDKKDHSHTPWIVIVAKYLTKWFNEKSDQ-LPKSYKEKEAFRQLIRQGI 252

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEEN 349
              K+ENG P  EENFEEA+K VN AL  T +P  +  I  D+  + L+E++
Sbjct:   253 LKNENGTPEDEENFEEAIKNVNTALNTTKIPRCIEEIFNDDCCVNLTEQS 302

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

RGD|619945 Nae1 "NEDD8 activating enzyme E1 subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 120/229 (52%), Positives = 163/229 (71%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   SIGK+RA+ A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T L 
Sbjct:    73 NFFLQKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLL 132

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct:   133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK+YKEK++ RELIR GI
Sbjct:   193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKSYKEKEDFRELIRQGI 251

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
              K+ENG P  EENFEEA+K VN AL  T +PSS+  I  D+  I ++++
Sbjct:   252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQ 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033314 "mitotic DNA replication checkpoint" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0019781 "NEDD8 activating enzyme activity" evidence=ISO

UNIPROTKB|Q9Z1A5 Nae1 "NEDD8-activating enzyme E1 regulatory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 120/229 (52%), Positives = 163/229 (71%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   SIGK+RA+ A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T L 
Sbjct:    73 NFFLQKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLL 132

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct:   133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK+YKEK++ RELIR GI
Sbjct:   193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKSYKEKEDFRELIRQGI 251

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
              K+ENG P  EENFEEA+K VN AL  T +PSS+  I  D+  I ++++
Sbjct:   252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQ 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:2384561 Nae1 "NEDD8 activating enzyme E1 subunit 1" [Mus musculus (taxid:10090)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 118/229 (51%), Positives = 164/229 (71%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   SIGK+RA+ A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T L 
Sbjct:    73 NFFLQKSSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLL 132

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct:   133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              +++ S DLD +E KDH H P++VI+ KYL  W ++ N + +PK+YKEK++ R+LIR GI
Sbjct:   193 REHLQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYNETNGR-IPKSYKEKEDFRDLIRQGI 251

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
              K+ENG P  EENFEEA+K VN AL  T +PSS+  I  D+  I ++++
Sbjct:   252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQ 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033314 "mitotic DNA replication checkpoint" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|E1B8X4 NAE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 119/229 (51%), Positives = 162/229 (70%)

Query:   120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
             +FFL   SIGK+RA+ A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T L 
Sbjct:    73 NFFLQRSSIGKNRAQAAMEFLQELNNDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLS 132

Query:   180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
             E+TL+ L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct:   133 ESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192

Query:   240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
              ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct:   193 REHFQSYDLDHMEKKDHSHTPWIVIVAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 251

Query:   300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
              K+ENG P  EENFEEA+K VN AL  T +PSS+  I  D+  I ++++
Sbjct:   252 LKNENGTPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQ 300

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q18217	ULA1_CAEEL	No assigned EC number	0.3156	0.6503	0.6155	yes	N/A
Q8VBW6	ULA1_MOUSE	No assigned EC number	0.4296	0.6855	0.6573	yes	N/A
Q7SXP2	ULA1_DANRE	No assigned EC number	0.4444	0.6757	0.6491	yes	N/A
Q9UT93	ULA1_SCHPO	No assigned EC number	0.3176	0.6132	0.6073	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	512
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	1e-144
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	1e-53
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	3e-35
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	2e-26
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	8e-18
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	1e-17
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	1e-17
pfam00899	134	pfam00899, ThiF, ThiF family	6e-14
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	1e-13
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	2e-12
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	1e-10
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	4e-10
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	6e-10
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	3e-09
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	3e-08
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	5e-08
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	1e-07
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	2e-07
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	4e-07
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	7e-07
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	7e-07
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	1e-06
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-05
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	2e-05
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	3e-05
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	5e-05
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	6e-05
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	8e-05
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	1e-04
PTZ00245	287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	1e-04
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	1e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	8e-04
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	0.001
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.003

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score =  421 bits (1084), Expect = e-144
 Identities = 176/357 (49%), Positives = 235/357 (65%), Gaps = 44/357 (12%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
           FFLD  S+GKSRAE   +LL ELNPD  G  V+E+P+ L+ NDP+FF  F +VI+TNLPE
Sbjct: 64  FFLDASSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPE 123

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
           +TL+ L+  LWS NIPLL  RSYG  G IR+Q+ EHTI+ESHPDN   DLRLD P+P L 
Sbjct: 124 STLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEHTIVESHPDNALEDLRLDNPFPELR 183

Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
           ++ DSIDLD ++  +H H PY+VIL KYL+ W+S +N Q LP  YKEK+  R+L+RS +R
Sbjct: 184 EHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQ-LPSTYKEKKEFRDLVRSLMR 242

Query: 301 KDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFA 360
            +E+                                          EENFEEA+KAVN A
Sbjct: 243 SNED------------------------------------------EENFEEAIKAVNKA 260

Query: 361 LIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD 420
           L  T +PSSV  I ND+ C NLTS+S  FWI+A+A+K+FV  E NG LPL G+LPDMTAD
Sbjct: 261 LNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEE-NGLLPLPGTLPDMTAD 319

Query: 421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           T +YI LQ +YR++A +DA  + +  +++L  LG+   +I++ ++KLFC+NA+F+ V
Sbjct: 320 TEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRV 376

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score =  186 bits (474), Expect = 1e-53
 Identities = 75/114 (65%), Positives = 92/114 (80%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWG+HGQAALESA +CL+NAT  GTEILK+LVLPG+GSFTI+DG K+ E+DLG NFFLD 
Sbjct: 9   LWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDA 68

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCP 114
            S+GKSRAE   +LL ELNPD  G  V+E+P+ L+ NDP+FF  F +VI+TN P
Sbjct: 69  SSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLP 122

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score =  130 bits (328), Expect = 3e-35
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 2/116 (1%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLD- 59
           LWGD  Q  L SA++ +I A  LG EI K+LVL G+ S TI+D   +S +DLG+NFFLD 
Sbjct: 8   LWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDA 67

Query: 60  -VDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCP 114
            V + G +RA  + + L ELNP+ +   V+E+     +N   + Q F +VI+T   
Sbjct: 68  EVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN 123

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score =  106 bits (266), Expect = 2e-26
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWG   Q  L SARI LI   GLG EI K+LVL G+GS TI+D   ++E+DLG  F +  
Sbjct: 10  LWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPA 69

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSL 118
           + +G++RAE + + L  LNP  +   V  +   +      FF  F +V++T      L
Sbjct: 70  EDLGQNRAEASLERLRALNPRVK---VSVDTDDISEKPEEFFSQFDVVVATELSRAEL 124

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 82.8 bits (205), Expect = 8e-18
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 1   LWGDH--GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFL 58
           L G    GQ  L+ +R+ ++ A GLG+   K L L GVG  TI+D + +   +L   F  
Sbjct: 17  LPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLF 76

Query: 59  DVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS 110
               +GK +AEVA + L +LNP  +     E       N       F +V+ 
Sbjct: 77  TEADVGKPKAEVAAKALRKLNPLVEVVAYLERLD--EENAEELIAQFDVVLD 126

Length = 254

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 120 SFFLD--VDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTN 177
           +FFLD  V + G +RA  + + L ELNP+ +   V+E+     +N   + Q F +VI+T 
Sbjct: 62  NFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATE 121

Query: 178 LPETTLIELSKTLWSLNIPLLACRSYGFIGSIR 210
                  +++      +IP ++C +YG IG   
Sbjct: 122 ENYERTAKVNDVCRKHHIPFISCATYGLIGYAF 154

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 14  RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQ 73
           R+ L+   GLG+EI  +L   GVG  T+ID + +   +L   F      IGK +AEVA +
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR 60

Query: 74  LLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
            L ELNP      V E   +   N  +F     +VI
Sbjct: 61  RLNELNPGVNVTAVPE--GISEDNLDDFLDGVDLVI 94

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score = 68.3 bits (168), Expect = 6e-14
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 12  SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVA 71
           S+R+ ++ A GLG+   + L   GVG  T++D + +   +L          IGK +AEVA
Sbjct: 1   SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVA 60

Query: 72  TQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
            + L  +NPD + +   E   +   N     +   +V+
Sbjct: 61  KERLRAINPDVEVEAYPER--LTPENLEELLKGVDLVV 96

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 10  LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAE 69
           L+ + + +    GLG EI K+L+L GV S T+ D +  S  DL + F+L  + IGK+RAE
Sbjct: 17  LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAE 76

Query: 70  VATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
            +   L ELNP                   +    F +V+ T+  +
Sbjct: 77  ASQARLAELNPYVPVTVSTGP------LTTDELLKFQVVVLTDASL 116

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 34/80 (42%), Positives = 46/80 (57%)

Query: 1  LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
          + GD     +  + + +    GLG EI K+LVL GV S T+ D EK    DL +NFFL  
Sbjct: 13 VLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSE 72

Query: 61 DSIGKSRAEVATQLLLELNP 80
          D +G++RAE   + L ELNP
Sbjct: 73 DDVGRNRAEAVVKKLAELNP 92

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query: 2   WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVD 61
            G  GQ +L  A++ +I A GLG+  L  L   GVG  TIID + +   +L         
Sbjct: 18  IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTA 77

Query: 62  SIGKSRAEVATQLLLELNPDCQGDFVDE 89
            +G+ +AE A + +L LNPD +      
Sbjct: 78  GVGQPKAESAREAMLALNPDVKVTVSVR 105

Length = 355

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 14  RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQ 73
           +I +I A GLG E+LK+L L G  +  +ID + I   +L   F      IGK +AEVA +
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAK 60

Query: 74  LLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS 110
            + +  P      V  +   +   D  F++ F+++I 
Sbjct: 61  FVNDRVPGVN---VTPHFGKIQDKDEEFYRQFNIIIC 94

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score = 59.0 bits (144), Expect = 6e-10
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 2  WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVD 61
           G+ GQ  L++AR+ ++ A GLG+   + L   GVG   ++D + +   +L         
Sbjct: 11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEA 70

Query: 62 SIGKSRAEVATQLLLELNPDCQGDFVDEN 90
           +G+ +AE A + L  +NPD + +  +E 
Sbjct: 71 DVGQPKAEAAAERLRAINPDVEIEAYNER 99

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 28/87 (32%), Positives = 44/87 (50%)

Query: 3  GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
          G+ GQ  L ++ + +I A GLG+     L   GVG+  I+D + +   +L        + 
Sbjct: 12 GEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEED 71

Query: 63 IGKSRAEVATQLLLELNPDCQGDFVDE 89
          +G+ + EVA Q L ELN D Q   + E
Sbjct: 72 VGRPKVEVAAQRLRELNSDIQVTALKE 98

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 2   WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVD 61
           +G   Q  L +AR+ +I A GLG   ++SL   GVG+ T+ID + +   ++         
Sbjct: 31  FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGAS 90

Query: 62  SIGKSRAEVATQLLLELNPD 81
            +G+ + EVA + L E+ PD
Sbjct: 91  DVGRPKVEVAAERLKEIQPD 110

Length = 370

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 22/107 (20%)

Query: 14  RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQ 73
           ++ L+ A G+G E+LK+L L G G   +ID + I   +L   F      IG+ ++EVA +
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE 60

Query: 74  LLLELNPDCQ-----------GDFVDENPQVLMANDPNFFQSFHMVI 109
            + + NP+C+            DF D            FF+ FH+++
Sbjct: 61  AVNDRNPNCKVVPYQNKVGPEQDFNDT-----------FFEQFHIIV 96

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           L+G+ G   L+ A +C++   G+G+  +++L   G+G  T+ID + +   +        +
Sbjct: 19  LYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL 78

Query: 61  DSIGKSRAEVATQLLLELNPDCQ----GDFVD-ENPQVLMANDPNFF 102
             IGK + EV  + + ++NP+C+     DF+  EN + L++   ++ 
Sbjct: 79  GDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYV 125

Length = 263

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
           F      IGK +AEVA + L ELNP      V E   +   N  +F     +VI      
Sbjct: 43  FLARQADIGKPKAEVAARRLNELNPGVNVTAVPE--GISEDNLDDFLDGVDLVIDAIDNI 100

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIR 210
                L++    L IP++     G  G I+
Sbjct: 101 AVRRALNRACKELGIPVIDAGGLGLGGDIQ 130

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 11/102 (10%)

Query: 14  RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQ 73
           ++ ++ A G+G E+LK+LVL G G   IID + I   +L   F      +GKS+A+VA +
Sbjct: 1   KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKE 60

Query: 74  LLLELNPDC-----QGDFVDENPQVLMANDPNFFQSFHMVIS 110
            +L  NP+        +  D +  V       FF+ F +V +
Sbjct: 61  AVLSFNPNVKIVAYHANIKDPDFNV------EFFKQFDLVFN 96

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
           G  GQ  L++AR+ +I A GLG+  L  L   GVG+  I++ + + E +L          
Sbjct: 33  GVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92

Query: 63  IGKSRAEVATQLLLELNP 80
           +G+S+A+ A   ++E+NP
Sbjct: 93  VGRSKAQSARDSIVEINP 110

Length = 392

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 5   HGQAALE---SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVD 61
           +G+ AL+    A IC++   G+G+   ++L   G+G+ T+ID + +   +         D
Sbjct: 20  YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRD 79

Query: 62  SIGKSRAEVATQLLLELNPDCQ----GDFVD-ENPQVLMAND 98
           ++G ++AEV  + + ++NP+C+     DF+  +N    M+  
Sbjct: 80  NVGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAG 121

Length = 268

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
           G+ G   L +A + ++   G+G+   ++L   GVG  T+ID + +   +L       + +
Sbjct: 2   GEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLST 61

Query: 63  IGKSRAEVATQLLLELNPDCQ----GDFVD-ENPQVLMANDPNF 101
           +GK + EV  + + ++NP+C+     +F+  +N + L+  DP+F
Sbjct: 62  VGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDF 105

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 31/87 (35%), Positives = 44/87 (50%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
           G+ GQ  L  AR+ LI A GLG+     L   GVG+  I+D + +   +L        D 
Sbjct: 126 GEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR 185

Query: 63  IGKSRAEVATQLLLELNPDCQGDFVDE 89
           +G+ + + A Q L  LNPD Q + V E
Sbjct: 186 VGQPKVDSAAQRLAALNPDVQVEAVQE 212

Length = 376

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 26/98 (26%)

Query: 427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIH---------V 477
           L+ L     G   D +     QLL  +              +C + + IH         V
Sbjct: 87  LELLEASPGGLPPDAVRSYIWQLLQAIA-------------YCHSHNIIHRDIKPENILV 133

Query: 478 NESKLVLKLCDFGSASWSHEN---EITPYLVSRFYRAP 512
           +ES  VLKLCDFG A          +T Y+ +R+YRAP
Sbjct: 134 SES-GVLKLCDFGFARALRARPASPLTDYVATRWYRAP 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 41/83 (49%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
           G  GQ  L++A +  I   GLG+ +L  L   G+G   I+D + +   +L          
Sbjct: 29  GLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSW 88

Query: 63  IGKSRAEVATQLLLELNPDCQGD 85
           +GK + E A   +LE+NP CQ D
Sbjct: 89  VGKPKIESAKNRILEINPYCQVD 111

Length = 390

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 7  QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
             L+ A++ +  A GLG+ I  +L   GVG+  ++D + +   +L    +  +  IG  
Sbjct: 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMP 81

Query: 67 RAEVATQLLLELNPDC 82
          + E   + LLE+NP  
Sbjct: 82 KVEALKENLLEINPFV 97

Length = 212

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 6   GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK 65
           GQ  L++AR+ ++   GLG    + L   GVG+ T++D + +S  +L      D  +IG+
Sbjct: 26  GQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85

Query: 66  SRAEVATQLLLELNPDCQ 83
            + E A   L  +NP   
Sbjct: 86  PKVESARAALARINPHIA 103

Length = 245

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
           F      +GK +AEVA + L +LNP  +     E       N       F +V+      
Sbjct: 74  FLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLD--EENAEELIAQFDVVLDCTDNF 131

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQI 213
            T   ++     L IPL+   + GF G + + I
Sbjct: 132 ETRYLINDACVKLGIPLVHGGAIGFEGQVTVII 164

Length = 254

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGV-----GSFTIIDGEKISEQDLGTNFF 57
           GD  Q  L++  I L+    +G E+LK+  L GV     G  T+ D + I + +L   F 
Sbjct: 410 GDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFL 469

Query: 58  LDVDSIGKSRAEVATQLLLELNP 80
                IGK ++  A    L++NP
Sbjct: 470 FRPHHIGKPKSYTAADATLKINP 492

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQ 73
          ++ +  A GLG+ I   L   GVG+  ++D + +   +L    +  +  IG+ + E   +
Sbjct: 1  KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKE 59

Query: 74 LLLELNPD 81
           L E+NP 
Sbjct: 60 NLREINPF 67

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 1  LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
          LWG   Q  L    + L    G   E  K+LVL GV +  + D   +++ D+ TN+ +  
Sbjct: 15 LWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG 74

Query: 61 DSIGKSRAEVATQLLLELNP 80
          ++ G +R   A   L  LNP
Sbjct: 75 EA-GGTRGARALGALQRLNP 93

Length = 287

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 6  GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK 65
          GQ AL+++R+ ++   GLG    + L   GVG+ T++D + +S  +L         +IG+
Sbjct: 18 GQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQ 77

Query: 66 SRAEVATQLLLELNP 80
           + E A   L ++NP
Sbjct: 78 PKVESAKDALTQINP 92

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 25/87 (28%)

Query: 450 LHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLCDFG 490
           LH++ +    +T+  ++ F     R   ++H               VN +   LK+CDFG
Sbjct: 90  LHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSN-CDLKICDFG 148

Query: 491 SA-----SWSHENEITPYLVSRFYRAP 512
            A         +  +T Y+V+R+YRAP
Sbjct: 149 LARGVDPDEDEKGFLTEYVVTRWYRAP 175

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
           F+L  + IGK+RAE +   L ELNP                   +    F +V+ T+   
Sbjct: 63  FYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP------LTTDELLKFQVVVLTDASL 116

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSI 209
              +++++   S  I  ++  + G  GSI
Sbjct: 117 EDQLKINEFCHSPGIKFISADTRGLFGSI 145

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 20/83 (24%)

Query: 450 LHQLGQPSSAITEAQVKLFC----RNASFIH--------VNESKLV------LKLCDFGS 491
           LHQ+ + S  +++   + F     R   +IH        +  S L+      LK+CDFG 
Sbjct: 95  LHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGL 154

Query: 492 ASWSHENE--ITPYLVSRFYRAP 512
           A  + E    +T Y+V+R+YRAP
Sbjct: 155 ARTTSEKGDFMTEYVVTRWYRAP 177

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	512
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
KOG2016|consensus	523		100.0
KOG2014|consensus	331		100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.98
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	99.97
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	99.97
KOG2015|consensus	422		99.97
PRK08223	287	hypothetical protein; Validated	99.97
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	99.97
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	99.97
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	99.97
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.96
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	99.96
PRK08328	231	hypothetical protein; Provisional	99.96
PRK07411	390	hypothetical protein; Validated	99.96
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	99.96
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.96
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.96
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.95
KOG2012|consensus	1013		99.95
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.95
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	99.95
KOG2013|consensus	603		99.95
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	99.95
KOG2012|consensus	1013		99.94
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.94
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.94
PRK14852	989	hypothetical protein; Provisional	99.94
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.94
PRK14851	679	hypothetical protein; Provisional	99.94
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.94
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.93
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.93
KOG2017|consensus	427		99.92
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.92
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.91
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.91
KOG0593|consensus	396		99.9
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.9
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.89
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.89
PRK07877	722	hypothetical protein; Provisional	99.88
KOG0659|consensus	318		99.87
KOG0660|consensus	359		99.87
KOG0600|consensus	560		99.87
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.86
KOG0661|consensus	538		99.86
KOG0663|consensus	419		99.85
PRK06153	393	hypothetical protein; Provisional	99.85
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.83
KOG0594|consensus	323		99.81
KOG0662|consensus	292		99.81
KOG0658|consensus	364		99.8
KOG0595|consensus	429		99.71
KOG0581|consensus	364		99.7
KOG0669|consensus	376		99.68
KOG2018|consensus	430		99.68
KOG0615|consensus	475		99.65
KOG0666|consensus	438		99.64
KOG2336|consensus	422		99.63
KOG2337|consensus	669		99.61
KOG0665|consensus	369		99.61
KOG0591|consensus	375		99.57
KOG0033|consensus	355		99.51
KOG0598|consensus	357		99.51
KOG0597|consensus	808		99.48
KOG0575|consensus	592		99.48
KOG0664|consensus	449		99.47
KOG0578|consensus	550		99.44
KOG0583|consensus	370		99.43
KOG0588|consensus	786		99.37
KOG0198|consensus	313		99.37
KOG0599|consensus	411		99.37
KOG0667|consensus	586		99.36
KOG0592|consensus	604		99.35
KOG0582|consensus	516		99.33
KOG4236|consensus	888		99.32
KOG0670|consensus	752		99.31
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.31
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.3
KOG4250|consensus	732		99.3
PTZ00036	440	glycogen synthase kinase; Provisional	99.29
KOG0604|consensus	400		99.29
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.29
KOG0192|consensus	362		99.28
KOG0611|consensus	668		99.27
KOG0589|consensus	426		99.26
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.26
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.26
KOG0574|consensus	502		99.25
KOG0577|consensus	948		99.25
KOG0584|consensus	632		99.25
PHA03212	391	serine/threonine kinase US3; Provisional	99.24
KOG0585|consensus	576		99.24
KOG0580|consensus	281		99.21
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.21
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.2
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.2
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.2
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.19
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.19
KOG4721|consensus	904		99.19
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.19
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.18
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.18
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.18
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.18
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.17
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.17
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.16
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.16
KOG0032|consensus	382		99.16
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.16
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.15
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.15
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.15
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.14
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.14
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.13
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.13
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.13
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.12
KOG0616|consensus	355		99.12
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.12
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.12
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.11
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.11
KOG4645|consensus	1509		99.11
KOG4717|consensus	864		99.11
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.11
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.1
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.1
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.1
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.09
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.09
KOG0579|consensus	1187		99.09
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.08
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.08
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.07
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.07
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.06
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.06
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.06
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.05
KOG0694|consensus	694		99.05
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.05
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.05
KOG4279|consensus	1226		99.05
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.05
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.05
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.05
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.04
PHA03211	461	serine/threonine kinase US3; Provisional	99.04
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.03
PHA03207	392	serine/threonine kinase US3; Provisional	99.03
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.03
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.03
KOG0201|consensus	467		99.03
PHA03209	357	serine/threonine kinase US3; Provisional	99.03
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.02
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.02
KOG0197|consensus	468		99.01
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.01
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.01
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	98.99
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.99
KOG1152|consensus	772		98.98
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	98.98
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.97
PTZ00283	496	serine/threonine protein kinase; Provisional	98.97
KOG0668|consensus	338		98.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.96
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	98.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.96
PTZ00267	478	NIMA-related protein kinase; Provisional	98.96
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.96
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.96
KOG0690|consensus	516		98.95
KOG0576|consensus	829		98.95
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.95
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.95
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.94
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	98.94
KOG0605|consensus	550		98.94
KOG0596|consensus	677		98.94
PLN00009	294	cyclin-dependent kinase A; Provisional	98.93
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.92
KOG0984|consensus	282		98.92
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	98.91
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.91
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.9
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	98.9
KOG0983|consensus	391		98.89
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.89
PHA03210	501	serine/threonine kinase US3; Provisional	98.88
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.88
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	98.88
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.88
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	98.88
KOG1006|consensus	361		98.88
PTZ00284	467	protein kinase; Provisional	98.88
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.88
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.87
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	98.87
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.86
KOG0586|consensus	596		98.86
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.86
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	98.86
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	98.86
PTZ00266	1021	NIMA-related protein kinase; Provisional	98.85
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.85
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.85
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.85
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	98.83
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	98.83
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.83
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.83
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.83
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.82
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.81
KOG1035|consensus	1351		98.81
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.81
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	98.8
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	98.8
KOG0986|consensus	591		98.8
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.8
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.79
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.79
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.79
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.79
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	98.78
KOG0194|consensus	474		98.78
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	98.78
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.78
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.77
KOG1151|consensus	775		98.76
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.76
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.76
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	98.75
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	98.75
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.75
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	98.75
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.75
KOG1989|consensus	738		98.75
KOG0612|consensus	1317		98.74
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.74
KOG0587|consensus	953		98.74
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.73
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.73
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	98.73
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	98.72
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	98.72
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.72
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	98.72
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	98.71
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.71
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.71
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.7
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	98.7
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.7
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.7
KOG0603|consensus	612		98.7
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.69
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.69
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.69
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	98.69
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	98.69
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.69
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.69
KOG0607|consensus	463		98.69
KOG0671|consensus	415		98.69
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.69
PHA02988	283	hypothetical protein; Provisional	98.68
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	98.68
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.68
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.68
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.67
KOG1187|consensus	361		98.67
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.67
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.67
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.66
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	98.66
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.66
KOG4257|consensus	974		98.66
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.65
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.65
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.65
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	98.65
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.65
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.65
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.64
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.64
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	98.64
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	98.64
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	98.64
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	98.64
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	98.63
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.63
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.63
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.63
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.63
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.63
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	98.63
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.62
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.61
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	98.61
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.61
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.61
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.61
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	98.61
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	98.61
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.61
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.6
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.6
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	98.6
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	98.6
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.6
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.6
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.6
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.6
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.59
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.59
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.59
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.59
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	98.59
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	98.59
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	98.59
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.59
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.58
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.58
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.58
KOG1027|consensus	903		98.58
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.58
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.58
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.58
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.57
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.57
KOG0193|consensus	678		98.57
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.57
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.57
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	98.57
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.57
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.56
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.56
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	98.56
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	98.55
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.55
KOG1026|consensus	774		98.55
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.55
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	98.54
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.54
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	98.54
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	98.54
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	98.54
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.54
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	98.54
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.53
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.53
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.53
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.53
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	98.52
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	98.52
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	98.52
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.52
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.52
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.52
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	98.52
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.52
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	98.51
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.5
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.5
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.5
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.5
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	98.49
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.48
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.48
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	98.48
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	98.48
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.48
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	98.48
PRK09188	365	serine/threonine protein kinase; Provisional	98.48
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.48
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.48
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	98.48
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.48
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.47
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.47
KOG1095|consensus	1025		98.47
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.47
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.47
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	98.47
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.47
KOG1167|consensus	418		98.46
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.46
KOG0695|consensus	593		98.45
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.45
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	98.45
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.45
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.44
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.43
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.43
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	98.42
KOG4278|consensus	1157		98.42
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.41
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.41
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.41
PLN00181	793	protein SPA1-RELATED; Provisional	98.4
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.4
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.39
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.39
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.38
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.37
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.36
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.36
KOG0614|consensus	732		98.35
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.35
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	98.34
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.34
KOG0196|consensus	996		98.34
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.34
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.34
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.34
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.33
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.33
PHA02882	294	putative serine/threonine kinase; Provisional	98.31
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	98.31
KOG3653|consensus	534		98.31
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.31
KOG2345|consensus	302		98.29
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	98.28
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.27
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.26
KOG0608|consensus	1034		98.22
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.22
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.19
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.15
KOG1094|consensus	807		98.12
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.09
KOG0199|consensus	1039		98.08
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	98.07
KOG0696|consensus	683		98.05
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	97.97
KOG2052|consensus	513		97.94
KOG0610|consensus	459		97.94
KOG0200|consensus	609		97.83
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	97.81
KOG0590|consensus	601		97.75
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.73
PLN03224	507	probable serine/threonine protein kinase; Provisio	97.72
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	97.7
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	97.7
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	97.69
PRK10345	210	hypothetical protein; Provisional	97.65
KOG1025|consensus	1177		97.6
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.57
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.55
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.52
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.34
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.3
KOG1345|consensus	378		97.24
KOG1164|consensus	322		97.18
smart00090	237	RIO RIO-like kinase.	97.09
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.01
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.99
KOG4158|consensus	598		96.89
PRK09605	535	bifunctional UGMP family protein/serine/threonine	96.86
PRK12274	218	serine/threonine protein kinase; Provisional	96.86
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.86
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.84
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.77
KOG1163|consensus	341		96.7
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.69
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	96.67
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	96.65
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.62
PRK14879	211	serine/threonine protein kinase; Provisional	96.53
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.47
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.4
KOG1165|consensus	449		96.4
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.37
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.26
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.22
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	96.1
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.02
KOG0603|consensus	612		96.0
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.98
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.94
KOG1033|consensus	516		95.78
PRK10637	457	cysG siroheme synthase; Provisional	95.63
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	95.61
KOG1290|consensus	590		95.51
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.51
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.32
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.29

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=1.8e-83  Score=671.89  Aligned_cols=373  Identities=58%  Similarity=0.997  Sum_probs=348.2

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+|+++|||++.+|+|++||++++++|+++||
T Consensus         9 LwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp   88 (425)
T cd01493           9 LWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNP   88 (425)
T ss_pred             HhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++.+.+.+.                                                                 .++
T Consensus        89 ~V~i~~~~e~~~-----------------------------------------------------------------~ll  103 (425)
T cd01493          89 DVNGSAVEESPE-----------------------------------------------------------------ALL  103 (425)
T ss_pred             CCEEEEEecccc-----------------------------------------------------------------hhh
Confidence            999999887765                                                                 222


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCCCCCCCccccChhhHH
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI  240 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~~~~dlr~~~p~p~L~  240 (512)
                      .+.++||.+||+||+|.++...+..++++|++.++|+|.+++.|++|++++++++|+++++||++..+|||++.|||+|.
T Consensus       104 ~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~h~i~et~p~~~~~DLRL~~P~peL~  183 (425)
T cd01493         104 DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEHTIVESHPDNALEDLRLDNPFPELR  183 (425)
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECCeEEEECCCCCCCcCcccCCCcHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCCccHHHHHHHh
Q psy17422        241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAV  320 (512)
Q Consensus       241 ~~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~~~~~i~~~~r~~~~~~~~~e~nf~ea~~~~  320 (512)
                      +|++++|+++||+.+|+|+||++||+|+|++||..|+|. +|++++||++|++++++++|..     .+||||+||++++
T Consensus       184 ~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~-~p~~~~ek~~f~~~i~~~~~~~-----~~eeNf~EA~~~~  257 (425)
T cd01493         184 EHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQ-LPSTYKEKKEFRDLVRSLMRSN-----EDEENFEEAIKAV  257 (425)
T ss_pred             HHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcccC-----CCccchHHHHHHH
Confidence            999999999999999999999999999999999999998 8999999999999999987752     3799995555555


Q ss_pred             hhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhh
Q psy17422        321 NFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       321 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~  400 (512)
                      +                                     ++++++.+|++++++|++.+|.|+...++.||++++|+|+|+
T Consensus       258 ~-------------------------------------~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~  300 (425)
T cd01493         258 N-------------------------------------KALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFV  300 (425)
T ss_pred             H-------------------------------------HhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHH
Confidence            5                                     445556789999999999999999888899999999999999


Q ss_pred             hcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCCCCCCCChHHHHhhccccccccccCC
Q psy17422        401 DNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      +++ +|.+||.|.+|||+++|..|++||++|++|+..|...|..++.++++.+|.....|++++|+.||||+++|.++++
T Consensus       301 ~~~-~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~  379 (425)
T cd01493         301 AEE-NGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRG  379 (425)
T ss_pred             Hhc-CCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccC
Confidence            887 8999999999999999999999999999999999999999999999999997789999999999999999999988


Q ss_pred             CC
Q psy17422        481 KL  482 (512)
Q Consensus       481 ~~  482 (512)
                      +.
T Consensus       380 ~~  381 (425)
T cd01493         380 RS  381 (425)
T ss_pred             Cc
Confidence            64

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>KOG2016|consensus

Probab=100.00  E-value=2.2e-82  Score=635.69  Aligned_cols=400  Identities=53%  Similarity=0.895  Sum_probs=364.6

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||++||..|+.++||++|||++|||++|||||+|||+||++|+..|..+|++.|||+..+++||+||.+.++.|+++||
T Consensus        16 lwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~   95 (523)
T KOG2016|consen   16 LWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNP   95 (523)
T ss_pred             HHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhCh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|...++.++++                                                                 .++
T Consensus        96 ~V~~~~vee~p~-----------------------------------------------------------------~Li  110 (523)
T KOG2016|consen   96 SVSGSFVEESPD-----------------------------------------------------------------FLI  110 (523)
T ss_pred             hhhcCccccChh-----------------------------------------------------------------hhh
Confidence            998766555444                                                                 667


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCCCCCCCccccChhhHH
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI  240 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~~~~dlr~~~p~p~L~  240 (512)
                      .++++||.+|++|+.++.+.+...++.++||+++||++.+.++|+.|++|+.+.+|+++++||+++.+|||++.|||+|.
T Consensus       111 ~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH~iieshPD~~~~DLRL~nPwpeLi  190 (523)
T KOG2016|consen  111 DNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEHTIIESHPDNPLDDLRLDNPWPELI  190 (523)
T ss_pred             hcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeeccccccCCCCcccccccCCCcHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCCccHHHHHHHh
Q psy17422        241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAV  320 (512)
Q Consensus       241 ~~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~~~~~i~~~~r~~~~~~~~~e~nf~ea~~~~  320 (512)
                      +|++++|++.|+...|+||||+++++|+|.+|..+|+++ +|+|++|+++|+++|++..      +..|||||       
T Consensus       191 ~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~-~p~t~~ekk~fkd~i~~~~------~~~DeeNy-------  256 (523)
T KOG2016|consen  191 EYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGN-LPSTYDEKKEFKDLIRSEM------GKADEENY-------  256 (523)
T ss_pred             HHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCC-CCccHHHHHHHHHHHHhcC------CCCccccH-------
Confidence            999999999999999999999999999999999999997 8999999999999998732      34589999       


Q ss_pred             hhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhh
Q psy17422        321 NFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       321 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~  400 (512)
                                                    +||++.++++|+++++|+++++||++.+|.++.+..+.||++++|+|.|+
T Consensus       257 ------------------------------eEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv  306 (523)
T KOG2016|consen  257 ------------------------------EEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFV  306 (523)
T ss_pred             ------------------------------HHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHH
Confidence                                          66666666667778888888888888888888888999999999999999


Q ss_pred             hcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCCCCCCCChHHHHhhccccccccccCC
Q psy17422        401 DNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      .+++.|.+||.|++|||.++|.+|++||++|++|+..|...|..+++++++.++.....|+.+.||.||||+.+|.|.++
T Consensus       307 ~~e~~g~lPL~GtlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~  386 (523)
T KOG2016|consen  307 LKEEGGFLPLRGTLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRG  386 (523)
T ss_pred             cccCCCccCCCCCCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeec
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999988


Q ss_pred             CCeEEEecCCCCC--------CCCCCCccCeeeeeeec
Q psy17422        481 KLVLKLCDFGSAS--------WSHENEITPYLVSRFYR  510 (512)
Q Consensus       481 ~~~~Kl~DfGlar--------~~~~~~~t~yv~tr~Yr  510 (512)
                      +....+.. ...+        ..+.+.+.+|+..|+|+
T Consensus       387 ~~~~eey~-~s~~~~~~~~~~e~~~~~~~~~~~lRavd  423 (523)
T KOG2016|consen  387 RTLAEEYE-KSITELIKYSSNENYSNEIGFYLLLRAVD  423 (523)
T ss_pred             chhhhhhc-ccchhhhhhccccccchhHHHHHHHHHHH
Confidence            65443333 1111        12334567777777764

>KOG2014|consensus

Probab=100.00  E-value=6e-35  Score=282.56  Aligned_cols=220  Identities=27%  Similarity=0.471  Sum_probs=183.6

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.++|++|+++||||+|++|+|+|++|||+|+|||++|++|+..|+++|++.|||++.+++|+.||++..++++++||
T Consensus        20 LWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNP   99 (331)
T KOG2014|consen   20 LWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNP   99 (331)
T ss_pred             HccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .|++....+.+.   .+                                                               
T Consensus       100 mV~v~~d~edl~---ek---------------------------------------------------------------  113 (331)
T KOG2014|consen  100 MVDVSVDKEDLS---EK---------------------------------------------------------------  113 (331)
T ss_pred             ceEEEechhhhh---hc---------------------------------------------------------------
Confidence            999998877665   33                                                               


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCC--C-----------CCC-
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESH--P-----------DNT-  226 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~--p-----------~~~-  226 (512)
                        +.+||.+||+||.+..+.+....++++|++.+|+|+.+.++|++||.|.++.+|.+.+.+  +           ++. 
T Consensus       114 --~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~  191 (331)
T KOG2014|consen  114 --DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETE  191 (331)
T ss_pred             --chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhhhhhhhcccccccccccceeeeecc
Confidence              455666667777777778889999999999999999999999999999999999887641  1           111 


Q ss_pred             CCCCccccChhhHHHHHhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q psy17422        227 NPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQN  290 (512)
Q Consensus       227 ~~dlr~~~p~p~L~~~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~  290 (512)
                      ........-||++.|+++ .||..-.....+++-..++++.++..+++++++.|- .++.+.-+
T Consensus       192 ~~~vk~~~~~~~~~Eal~-~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg-~~~~~d~e  253 (331)
T KOG2014|consen  192 TEWVKRKVVFPSVKEALS-VDWTKKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPG-ETSEEDLE  253 (331)
T ss_pred             ceehhhhhcccCHHHHHh-cccchhhhhhhhccCcceehHHHHHHHHHhcCCCCc-cccHHHHH
Confidence            112345778999999997 999722223355666677788999999999988733 24444333

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=3.6e-33  Score=318.27  Aligned_cols=276  Identities=22%  Similarity=0.275  Sum_probs=209.3

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.++|++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||+||||++++|||++||++++++|+++||
T Consensus        13 l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp   92 (1008)
T TIGR01408        13 VLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNP   92 (1008)
T ss_pred             hcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .|+++++...+.                                                                    
T Consensus        93 ~V~V~~~~~~l~--------------------------------------------------------------------  104 (1008)
T TIGR01408        93 YVHVSSSSVPFN--------------------------------------------------------------------  104 (1008)
T ss_pred             CceEEEecccCC--------------------------------------------------------------------
Confidence            999998876553                                                                    


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCC--CcEEEEeeeceeEEEEEEeCC-ceeecCCCCCCCC--------C
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLN--IPLLACRSYGFIGSIRLQISE-HTIIESHPDNTNP--------D  229 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~--ip~i~~~~~G~~G~v~~~~~~-~~~~~~~p~~~~~--------d  229 (512)
                         .+++++||+||+|.++.+.+..++++|++++  ||||.+++.|++|++|+++++ |.+++..|..+.+        +
T Consensus       105 ---~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f~~~d~~ge~p~~~~i~~i~~~  181 (1008)
T TIGR01408       105 ---EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLDTDGEEPKTGFIASITQA  181 (1008)
T ss_pred             ---HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCceEEEeCCCCCCCcccccccccC
Confidence               2357789999999999999999999999999  999999999999999999998 5566654322100        0


Q ss_pred             -------------------------------C--------------------------------------ccccChhhHH
Q psy17422        230 -------------------------------L--------------------------------------RLDKPWPSLI  240 (512)
Q Consensus       230 -------------------------------l--------------------------------------r~~~p~p~L~  240 (512)
                                                     +                                      .....|.+|.
T Consensus       182 ~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~  261 (1008)
T TIGR01408       182 NPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGDTTELGPYLHGGIATQVKTPKTVFFKSLR  261 (1008)
T ss_pred             CCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEeccccccchhhcCceEEEEeccccccccCHH
Confidence                                           0                                      1223567777


Q ss_pred             HHHhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhccccCCC-CCCCCCccHHHHH-H
Q psy17422        241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDEN-GIPLSEENFEEAM-K  318 (512)
Q Consensus       241 ~~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~~~~~i~~~~r~~~~-~~~~~e~nf~ea~-~  318 (512)
                      +.+.+-++-.-|.....+.|.+.+.++||.+|++.|++.|.|.+.++.+++.++.......... ....+ +.+.+.. +
T Consensus       262 ~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~i~~~~~~~~~~ld-e~li~~~~~  340 (1008)
T TIGR01408       262 EQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATSISETLEEKVPDVD-AKLVHWLSW  340 (1008)
T ss_pred             HHHcCCcccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCC-HHHHHHHHH
Confidence            7665421111111123367778889999999999998877777888888888887665433211 01122 2332322 2


Q ss_pred             HhhhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcC
Q psy17422        319 AVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALI  362 (512)
Q Consensus       319 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~  362 (512)
                      .+.-.+      .-++.++.+..+        +|++|.+...+.
T Consensus       341 ~~~gei------sPv~Ai~GGi~a--------QEViKaisgKf~  370 (1008)
T TIGR01408       341 TAQGFL------SPMAAAVGGVVS--------QEVLKAVTGKFS  370 (1008)
T ss_pred             hccccc------cHHHHHhchHHH--------HHHHHHhcCCCC
Confidence            222222      235666666664        788888755443

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=2.6e-33  Score=279.35  Aligned_cols=151  Identities=26%  Similarity=0.414  Sum_probs=140.0

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +||.++|++|++++|||+|+||+|+|+||||+++|||+|||+|+|.|+.+||+||||++++|+|++||++++++|+++||
T Consensus         8 ~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp   87 (286)
T cd01491           8 VLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP   87 (286)
T ss_pred             ccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++.+...+.                                                                    
T Consensus        88 ~V~V~~~~~~~~--------------------------------------------------------------------   99 (286)
T cd01491          88 YVPVTVSTGPLT--------------------------------------------------------------------   99 (286)
T ss_pred             CCEEEEEeccCC--------------------------------------------------------------------
Confidence            999998876543                                                                    


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCce-eecCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT-IIESH  222 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~-~~~~~  222 (512)
                         .+++.+||+||+|.++.+.+..++++|+++++|||.+++.|++|++|+++++|. +++..
T Consensus       100 ---~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~~  159 (286)
T cd01491         100 ---TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDPN  159 (286)
T ss_pred             ---HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCCC
Confidence               235678899999999999999999999999999999999999999999999854 45433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=2.3e-33  Score=267.34  Aligned_cols=145  Identities=34%  Similarity=0.625  Sum_probs=135.6

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +||.++|++|++++|+|+|+||+|||++|||+++|||+|+|+|+|.|+.+|++||||++.+|+|++||++++++|+++||
T Consensus        10 l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp   89 (197)
T cd01492          10 LWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP   89 (197)
T ss_pred             HhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +++++.+...+.                                                                    
T Consensus        90 ~v~i~~~~~~~~--------------------------------------------------------------------  101 (197)
T cd01492          90 RVKVSVDTDDIS--------------------------------------------------------------------  101 (197)
T ss_pred             CCEEEEEecCcc--------------------------------------------------------------------
Confidence            999998876554                                                                    


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEe
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQI  213 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  213 (512)
                      ....+++++||+||+|.++.+.+..++++|+++++|++.+++.|++||+++++
T Consensus       102 ~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~  154 (197)
T cd01492         102 EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL  154 (197)
T ss_pred             ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence            11245678899999999999999999999999999999999999999999864

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=5.8e-33  Score=264.96  Aligned_cols=148  Identities=37%  Similarity=0.640  Sum_probs=136.4

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCc--CccCChHHHHHHHHHHhh
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV--DSIGKSRAEVATQLLLEL   78 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~--~dvGk~ka~~~~~~l~~l   78 (512)
                      +||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||++.  +|+|++||++++++|+++
T Consensus         8 l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l   87 (198)
T cd01485           8 LWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL   87 (198)
T ss_pred             ccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999998  899999999999999999


Q ss_pred             CCCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchh
Q psy17422         79 NPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV  158 (512)
Q Consensus        79 np~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  158 (512)
                      ||+++++.+.+.+..                                                                 
T Consensus        88 Np~v~i~~~~~~~~~-----------------------------------------------------------------  102 (198)
T cd01485          88 NPNVKLSIVEEDSLS-----------------------------------------------------------------  102 (198)
T ss_pred             CCCCEEEEEeccccc-----------------------------------------------------------------
Confidence            999999988776530                                                                 


Q ss_pred             hccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEe
Q psy17422        159 LMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQI  213 (512)
Q Consensus       159 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  213 (512)
                      ...+..+++++||+||+|.++...+..++++|+++++|++.+++.|++||+++++
T Consensus       103 ~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~  157 (198)
T cd01485         103 NDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF  157 (198)
T ss_pred             chhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence            0012356788999999999999999999999999999999999999999999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.98  E-value=4.7e-32  Score=309.18  Aligned_cols=177  Identities=23%  Similarity=0.354  Sum_probs=157.2

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCC-----CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHH
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGV-----GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLL   75 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv-----~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l   75 (512)
                      +||.++|++|++++|+|+|+||+|||++|||+++||     |+|+|+|+|+|+.+||+|||||+.+|||++||+++++.+
T Consensus       408 l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l  487 (1008)
T TIGR01408       408 VFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADAT  487 (1008)
T ss_pred             HcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHH
Confidence            699999999999999999999999999999999999     899999999999999999999999999999999999999


Q ss_pred             HhhCCCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCc
Q psy17422         76 LELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN  155 (512)
Q Consensus        76 ~~lnp~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  155 (512)
                      +++||+++++++...+.+..                                                            
T Consensus       488 ~~~Np~v~I~~~~~~v~~~~------------------------------------------------------------  507 (1008)
T TIGR01408       488 LKINPQIKIDAHQNRVGPET------------------------------------------------------------  507 (1008)
T ss_pred             HHHCCCCEEEEEEeecChhh------------------------------------------------------------
Confidence            99999999999988775100                                                            


Q ss_pred             chhhccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCce-eecCCCCCCCCCCcccc
Q psy17422        156 PQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT-IIESHPDNTNPDLRLDK  234 (512)
Q Consensus       156 ~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~-~~~~~p~~~~~dlr~~~  234 (512)
                       +.+  .+.+||.++|+||.|.|+.+++..+++.|+.+++|+|.+++.|+.|++++..|+++ +.+++++.    .+...
T Consensus       508 -e~i--~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d~----~~~~~  580 (1008)
T TIGR01408       508 -ETI--FNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDP----PEKEI  580 (1008)
T ss_pred             -hhh--hhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCCC----CCCCC
Confidence             011  13568899999999999999999999999999999999999999999999999865 55555542    24578


Q ss_pred             ChhhHHHHHh
Q psy17422        235 PWPSLIQYVD  244 (512)
Q Consensus       235 p~p~L~~~~~  244 (512)
                      |+|+|.+|..
T Consensus       581 P~Ctl~~~P~  590 (1008)
T TIGR01408       581 PFCTLKSFPA  590 (1008)
T ss_pred             CcccccCCCC
Confidence            8999887765

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=99.97  E-value=3.5e-31  Score=264.33  Aligned_cols=193  Identities=30%  Similarity=0.395  Sum_probs=150.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV   93 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~~   93 (512)
                      ||+|+|+||+|||++|||+++|||+|+|+|+|+|+.+||+||||++.+|+|++||++++++|+++||+++++++...+. 
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~-   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ-   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999877665 


Q ss_pred             cccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccEE
Q psy17422         94 LMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMV  173 (512)
Q Consensus        94 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~V  173 (512)
                                                                                         ..+.+|+++||+|
T Consensus        80 -------------------------------------------------------------------~~~~~f~~~fdvV   92 (291)
T cd01488          80 -------------------------------------------------------------------DKDEEFYRQFNII   92 (291)
T ss_pred             -------------------------------------------------------------------chhHHHhcCCCEE
Confidence                                                                               1134678889999


Q ss_pred             EEcCCChHHHHHHHHHHHhC--------CCcEEEEeeeceeEEEEEEeCCce-----eecCCCCCCCCCCccccChhhH-
Q psy17422        174 ISTNLPETTLIELSKTLWSL--------NIPLLACRSYGFIGSIRLQISEHT-----IIESHPDNTNPDLRLDKPWPSL-  239 (512)
Q Consensus       174 i~~~~~~~~~~~l~~~~~~~--------~ip~i~~~~~G~~G~v~~~~~~~~-----~~~~~p~~~~~dlr~~~p~p~L-  239 (512)
                      |.+.|+.+++..+++.|.+.        ++|+|++++.|+.|++++.+|+++     ..+.+|+.....+..-..+|.+ 
T Consensus        93 i~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~p~Cti~~~P~~~  172 (291)
T cd01488          93 ICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLP  172 (291)
T ss_pred             EECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCCCcccccCCCCCc
Confidence            99999999999999987654        599999999999999999998853     4455555432222222223332 


Q ss_pred             ---HHHHhhcCCC------ccccccccCccHHHHHHHHHHHHHHhc
Q psy17422        240 ---IQYVDSIDLD------SLEVKDHMHIPYLVILYKYLKLWQSQN  276 (512)
Q Consensus       240 ---~~~~~~~d~~------~l~~~~~~~ip~~~~l~~~l~~~~~~~  276 (512)
                         .+|+..+.|+      .+|.+...|+-|++  -+|.++-++.+
T Consensus       173 ~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~--~~a~~ra~~f~  216 (291)
T cd01488         173 EHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLY--QKALERAAQFN  216 (291)
T ss_pred             chheeeeeeeecccccCCCcCCCCCHHHHHHHH--HHHHHHHHHcC
Confidence               2333333343      35656666777654  55555555544

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=99.97  E-value=7.3e-31  Score=255.46  Aligned_cols=189  Identities=23%  Similarity=0.371  Sum_probs=149.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV   93 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~~   93 (512)
                      ||+|+|+||+|||++|+|+++|||+|+|+|+|.|+.+||+|||||+.+|+|++||++++++++++||+++++++...+.+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999998887751


Q ss_pred             cccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccEE
Q psy17422         94 LMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMV  173 (512)
Q Consensus        94 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~V  173 (512)
                      ..                                                                 ..+.+|+++||+|
T Consensus        81 ~~-----------------------------------------------------------------~~~~~f~~~~DvV   95 (234)
T cd01484          81 EQ-----------------------------------------------------------------DFNDTFFEQFHII   95 (234)
T ss_pred             hh-----------------------------------------------------------------hchHHHHhCCCEE
Confidence            00                                                                 1134678899999


Q ss_pred             EEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCce-eecCCCCC--CCCCCccccChhhHH----HHHhhc
Q psy17422        174 ISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT-IIESHPDN--TNPDLRLDKPWPSLI----QYVDSI  246 (512)
Q Consensus       174 i~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~-~~~~~p~~--~~~dlr~~~p~p~L~----~~~~~~  246 (512)
                      |.|.|+.+++..++++|++.++|+|++++.|+.|++++..|+++ +.++.++.  ...++....++|++.    +|+..+
T Consensus        96 i~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~~P~~~~hci~~a~~~  175 (234)
T cd01484          96 VNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIEWARML  175 (234)
T ss_pred             EECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999998742 44443322  122233445666543    444433


Q ss_pred             CCCccccccccCccHHHHHHHHHHHHHH
Q psy17422        247 DLDSLEVKDHMHIPYLVILYKYLKLWQS  274 (512)
Q Consensus       247 d~~~l~~~~~~~ip~~~~l~~~l~~~~~  274 (512)
                      -|     +...|+.|++  ..|..|-+.
T Consensus       176 ~~-----d~~~~~~~i~--~~a~~ra~~  196 (234)
T cd01484         176 QW-----DDPEHIQFIF--QASNERASQ  196 (234)
T ss_pred             Hh-----CCHHHHHHHH--HHHHHHHHH
Confidence            33     2345677764  344444333

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>KOG2015|consensus

Probab=99.97  E-value=1.1e-30  Score=254.26  Aligned_cols=210  Identities=27%  Similarity=0.388  Sum_probs=161.6

Q ss_pred             CHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCC
Q psy17422          3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDC   82 (512)
Q Consensus         3 G~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v   82 (512)
                      +.+..+.|.+++|||+|+||+|||++|||+++|++.+++||.|+++.+||+|||+|++.|+|++||+++|+.++...|.+
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~  110 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC  110 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHH--HHhhhcCCCCCCCCCCCcchhhc
Q psy17422         83 QGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVAT--QLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        83 ~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .+.++..++.   +++.+||++|+++|.             ++|||++|||+|.+  .+..+-|.               
T Consensus       111 ~v~~h~~kIq---d~~~~FYk~F~~iic-------------GLDsIeaRRwIN~mL~~l~~~g~~---------------  159 (422)
T KOG2015|consen  111 VVVPHRQKIQ---DKPISFYKRFDLIIC-------------GLDSIEARRWINGMLVRLKLEGNY---------------  159 (422)
T ss_pred             EEeeeecchh---cCCHHHHhhhceEEe-------------cccchhHHHHHHHHHHHHHhccCC---------------
Confidence            9998888776   999999999999998             69999999999988  22211111               


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCc-----eeecCCCCCCC-CCC----
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEH-----TIIESHPDNTN-PDL----  230 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~-----~~~~~~p~~~~-~dl----  230 (512)
                                |                   ...-||+|++|+.||.|++++.+|+.     |..|..|.... |..    
T Consensus       160 ----------d-------------------~~~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAn  210 (422)
T KOG2015|consen  160 ----------D-------------------ISSIIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIAN  210 (422)
T ss_pred             ----------C-------------------ccceeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecC
Confidence                      1                   01347999999999999999999995     33344444322 111    


Q ss_pred             --cc---ccChhhHHHHHhhcCC-CccccccccCccHHHHHHHHHHHHHH
Q psy17422        231 --RL---DKPWPSLIQYVDSIDL-DSLEVKDHMHIPYLVILYKYLKLWQS  274 (512)
Q Consensus       231 --r~---~~p~p~L~~~~~~~d~-~~l~~~~~~~ip~~~~l~~~l~~~~~  274 (512)
                        |+   ...|-.+.+|.+...+ ..++.++..||-|++  -+++++..+
T Consensus       211 tPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~--er~~eRA~e  258 (422)
T KOG2015|consen  211 TPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIV--ERSNERANE  258 (422)
T ss_pred             CCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHH--HHHHHHhhh
Confidence              11   1234444444442222 235556667777764  455555433

>PRK08223 hypothetical protein; Validated

Probab=99.97  E-value=3e-30  Score=256.04  Aligned_cols=148  Identities=18%  Similarity=0.208  Sum_probs=136.9

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      ++|.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|+|+.+||+|||+++.+|+|++||++++++|+++||
T Consensus        16 ~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP   95 (287)
T PRK08223         16 WITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP   95 (287)
T ss_pred             hcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .++|+++...+++                                                                   
T Consensus        96 ~v~V~~~~~~l~~-------------------------------------------------------------------  108 (287)
T PRK08223         96 ELEIRAFPEGIGK-------------------------------------------------------------------  108 (287)
T ss_pred             CCEEEEEecccCc-------------------------------------------------------------------
Confidence            9999998887750                                                                   


Q ss_pred             cCCCCCCccccEEEEcCCCh--HHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPE--TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~--~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      .+..++++++|+||++.|+.  +++..+++.|++++||+|++.+.|+.|++.+..|+
T Consensus       109 ~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~  165 (287)
T PRK08223        109 ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG  165 (287)
T ss_pred             cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC
Confidence            12245677899999999975  89999999999999999999999999999888764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=99.97  E-value=2.4e-30  Score=247.88  Aligned_cols=147  Identities=25%  Similarity=0.376  Sum_probs=136.5

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||||++++|+|++||++++++|+++||+
T Consensus        11 ~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   90 (202)
T TIGR02356        11 IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD   90 (202)
T ss_pred             cCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+.+                                                                   .
T Consensus        91 v~i~~~~~~i~~-------------------------------------------------------------------~  103 (202)
T TIGR02356        91 IQVTALKERVTA-------------------------------------------------------------------E  103 (202)
T ss_pred             CEEEEehhcCCH-------------------------------------------------------------------H
Confidence            999988776650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +..++++++|+||+|.++.+.+..++++|+++++|+|.+++.|+.|++++..|.
T Consensus       104 ~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~  157 (202)
T TIGR02356       104 NLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPG  157 (202)
T ss_pred             HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCC
Confidence            113457889999999999999999999999999999999999999999987654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=99.97  E-value=2.9e-30  Score=251.97  Aligned_cols=147  Identities=24%  Similarity=0.421  Sum_probs=136.4

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||||++++|+|++||++++++|+++||+
T Consensus        11 ~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   90 (228)
T cd00757          11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD   90 (228)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+..                                                                   .
T Consensus        91 ~~i~~~~~~i~~-------------------------------------------------------------------~  103 (228)
T cd00757          91 VEIEAYNERLDA-------------------------------------------------------------------E  103 (228)
T ss_pred             CEEEEecceeCH-------------------------------------------------------------------H
Confidence            999988776540                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +..++++++|+||+|.|+...+..++++|+++++|+|++++.|+.|++.+..|+
T Consensus       104 ~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~  157 (228)
T cd00757         104 NAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPG  157 (228)
T ss_pred             HHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCC
Confidence            123456789999999999999999999999999999999999999999988775

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=99.97  E-value=2.8e-30  Score=254.29  Aligned_cols=147  Identities=20%  Similarity=0.337  Sum_probs=136.4

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++++|+++||+
T Consensus        22 ~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~  101 (245)
T PRK05690         22 FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH  101 (245)
T ss_pred             cCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++++...+++                                                                   .
T Consensus       102 v~i~~~~~~i~~-------------------------------------------------------------------~  114 (245)
T PRK05690        102 IAIETINARLDD-------------------------------------------------------------------D  114 (245)
T ss_pred             CEEEEEeccCCH-------------------------------------------------------------------H
Confidence            999998776650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +..++++++|+||+|+|+.+.+..++++|+++++|++.+++.|+.|++.+..+.
T Consensus       115 ~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~  168 (245)
T PRK05690        115 ELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQ  168 (245)
T ss_pred             HHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecC
Confidence            123467889999999999999999999999999999999999999999887653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.96  E-value=1.3e-29  Score=262.29  Aligned_cols=147  Identities=25%  Similarity=0.326  Sum_probs=137.1

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++++|+++||+
T Consensus        18 ~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~   97 (355)
T PRK05597         18 IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD   97 (355)
T ss_pred             cCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      |+++++...+++                                                                   .
T Consensus        98 v~v~~~~~~i~~-------------------------------------------------------------------~  110 (355)
T PRK05597         98 VKVTVSVRRLTW-------------------------------------------------------------------S  110 (355)
T ss_pred             cEEEEEEeecCH-------------------------------------------------------------------H
Confidence            999998876650                                                                   1


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +..++++++|+||+|+|+..++..+++.|++.++|+|.+++.|+.|++.+..++
T Consensus       111 ~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~  164 (355)
T PRK05597        111 NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAG  164 (355)
T ss_pred             HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCC
Confidence            123467889999999999999999999999999999999999999999987654

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=99.96  E-value=1.6e-29  Score=255.12  Aligned_cols=145  Identities=28%  Similarity=0.486  Sum_probs=132.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV   93 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~~   93 (512)
                      +|+|+|+||+|||++|||+++|||+|+|+|+|.|+.+||+||||++++|||++||++++++|+++||+|+++++...+.+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999998877750


Q ss_pred             cccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccEE
Q psy17422         94 LMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMV  173 (512)
Q Consensus        94 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~V  173 (512)
                                                                                       . ..+.+|+++||+|
T Consensus        81 -----------------------------------------------------------------~-~~~~~f~~~~DvV   94 (312)
T cd01489          81 -----------------------------------------------------------------P-DFNVEFFKQFDLV   94 (312)
T ss_pred             -----------------------------------------------------------------c-cchHHHHhcCCEE
Confidence                                                                             0 1134678899999


Q ss_pred             EEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCce-eecCCCC
Q psy17422        174 ISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT-IIESHPD  224 (512)
Q Consensus       174 i~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~-~~~~~p~  224 (512)
                      |.|.|+.+++..++++|+..++|+|.+++.|+.|++++++|+++ +.++.++
T Consensus        95 v~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~  146 (312)
T cd01489          95 FNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPK  146 (312)
T ss_pred             EECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC
Confidence            99999999999999999999999999999999999999999854 6665543

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08328 hypothetical protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=245.13  Aligned_cols=149  Identities=19%  Similarity=0.264  Sum_probs=136.7

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCC-hHHHHHHHHHHhhC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK-SRAEVATQLLLELN   79 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk-~ka~~~~~~l~~ln   79 (512)
                      +||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|++|||+++++|+|+ +|+++++++|+++|
T Consensus        16 ~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n   95 (231)
T PRK08328         16 IFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFN   95 (231)
T ss_pred             hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhC
Confidence            69999999999999999999999999999999999999999999999999999999999999999 59999999999999


Q ss_pred             CCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhh
Q psy17422         80 PDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVL  159 (512)
Q Consensus        80 p~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  159 (512)
                      |+++++++...+.+                                                                  
T Consensus        96 p~v~v~~~~~~~~~------------------------------------------------------------------  109 (231)
T PRK08328         96 SDIKIETFVGRLSE------------------------------------------------------------------  109 (231)
T ss_pred             CCCEEEEEeccCCH------------------------------------------------------------------
Confidence            99999987765540                                                                  


Q ss_pred             ccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCc
Q psy17422        160 MANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEH  216 (512)
Q Consensus       160 ~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  216 (512)
                       .+..++++++|+||+|.|+.+++..++++|+++++|+|++++.|+.|++++..|++
T Consensus       110 -~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~  165 (231)
T PRK08328        110 -ENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGK  165 (231)
T ss_pred             -HHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCC
Confidence             01123577899999999999999999999999999999999999999999887764

>PRK07411 hypothetical protein; Validated

Probab=99.96  E-value=3.4e-29  Score=262.12  Aligned_cols=146  Identities=24%  Similarity=0.349  Sum_probs=136.7

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|+|+.+||+|||+++.+|+|++||++++++|+++||.
T Consensus        28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~  107 (390)
T PRK07411         28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY  107 (390)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++++...+++                                                                   .
T Consensus       108 v~v~~~~~~~~~-------------------------------------------------------------------~  120 (390)
T PRK07411        108 CQVDLYETRLSS-------------------------------------------------------------------E  120 (390)
T ss_pred             CeEEEEecccCH-------------------------------------------------------------------H
Confidence            999999887760                                                                   1


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQIS  214 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  214 (512)
                      +..+++.++|+||+|+|+.+++..++++|++.++|++.+++.|+.|++.+..+
T Consensus       121 ~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~  173 (390)
T PRK07411        121 NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNY  173 (390)
T ss_pred             hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECC
Confidence            12356788999999999999999999999999999999999999999987753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=99.96  E-value=6.2e-29  Score=243.75  Aligned_cols=144  Identities=20%  Similarity=0.349  Sum_probs=132.7

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||++++++|+++||+
T Consensus        14 ~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~   93 (240)
T TIGR02355        14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH   93 (240)
T ss_pred             CCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+++                                                                   .
T Consensus        94 v~i~~~~~~i~~-------------------------------------------------------------------~  106 (240)
T TIGR02355        94 IAINPINAKLDD-------------------------------------------------------------------A  106 (240)
T ss_pred             cEEEEEeccCCH-------------------------------------------------------------------H
Confidence            999988776650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEE
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQ  212 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~  212 (512)
                      +..++++++|+||+|.|+.+++..++++|++.++|++.+++.|+.|++.+.
T Consensus       107 ~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~  157 (240)
T TIGR02355       107 ELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVF  157 (240)
T ss_pred             HHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEE
Confidence            123467889999999999999999999999999999999999999998654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.96  E-value=6.2e-29  Score=260.66  Aligned_cols=145  Identities=23%  Similarity=0.344  Sum_probs=135.7

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||++++++|+++||+
T Consensus        32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~  111 (392)
T PRK07878         32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL  111 (392)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      |+++.+...++.                                                                   .
T Consensus       112 v~i~~~~~~i~~-------------------------------------------------------------------~  124 (392)
T PRK07878        112 VNVRLHEFRLDP-------------------------------------------------------------------S  124 (392)
T ss_pred             cEEEEEeccCCh-------------------------------------------------------------------h
Confidence            999988876650                                                                   1


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEe
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQI  213 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  213 (512)
                      +..++++++|+||+|+|+...+..++++|++.++|++.+++.|+.|++++..
T Consensus       125 ~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~  176 (392)
T PRK07878        125 NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFW  176 (392)
T ss_pred             HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEe
Confidence            1235678899999999999999999999999999999999999999999775

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.96  E-value=2.2e-28  Score=255.60  Aligned_cols=164  Identities=22%  Similarity=0.348  Sum_probs=139.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-----CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-----GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-----~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      +|+|||+||+|||++|||+++||     |+|+|+|+|.|+.+||+|||+++++|||++||+++++.++++||+++++++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCc
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQ  168 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  168 (512)
                      ..+.+..                                                             ..+  -+.+|++
T Consensus        81 ~~v~~~~-------------------------------------------------------------~~~--~~~~f~~   97 (435)
T cd01490          81 NRVGPET-------------------------------------------------------------EHI--FNDEFWE   97 (435)
T ss_pred             cccChhh-------------------------------------------------------------hhh--hhHHHhc
Confidence            8775100                                                             011  1357889


Q ss_pred             cccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCce-eecCCCCCCCCCCccccChhhHHHHHh
Q psy17422        169 SFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT-IIESHPDNTNPDLRLDKPWPSLIQYVD  244 (512)
Q Consensus       169 ~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~-~~~~~p~~~~~dlr~~~p~p~L~~~~~  244 (512)
                      ++|+|+.|.|+.+++..+++.|+..++|+|.+++.|+.|++++.+|.++ +.++.++    +.+...|.|+|.++..
T Consensus        98 ~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~----p~~~~~P~Ctl~~~P~  170 (435)
T cd01490          98 KLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD----PPEKSIPLCTLKNFPN  170 (435)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCC----CCCCCCCCccccCCCC
Confidence            9999999999999999999999999999999999999999999999742 2222222    1234567777665543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.95  E-value=3.2e-28  Score=252.57  Aligned_cols=146  Identities=24%  Similarity=0.391  Sum_probs=135.8

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||++++++|+++||+
T Consensus        31 ~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~  110 (370)
T PRK05600         31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD  110 (370)
T ss_pred             hCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++++...+++                                                                   .
T Consensus       111 v~i~~~~~~i~~-------------------------------------------------------------------~  123 (370)
T PRK05600        111 IRVNALRERLTA-------------------------------------------------------------------E  123 (370)
T ss_pred             CeeEEeeeecCH-------------------------------------------------------------------H
Confidence            999988776650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQIS  214 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  214 (512)
                      +..++++++|+||+|+|+.+++..++++|++.++|+|.+++.|+.|++.+..+
T Consensus       124 ~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~  176 (370)
T PRK05600        124 NAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNS  176 (370)
T ss_pred             HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEec
Confidence            12346788999999999999999999999999999999999999999987643

>KOG2012|consensus

Probab=99.95  E-value=1.3e-27  Score=255.87  Aligned_cols=227  Identities=23%  Similarity=0.367  Sum_probs=188.6

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +.|.++.++|..++|||.|++|+|.||||||+|+||+++||-|...+..+||+.||+++++|||++||++..++|.+||+
T Consensus        26 VlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~  105 (1013)
T KOG2012|consen   26 VLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNN  105 (1013)
T ss_pred             hccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .|.+.++++..+                                                                    
T Consensus       106 yV~V~v~t~~~~--------------------------------------------------------------------  117 (1013)
T KOG2012|consen  106 YVPVVVLTGPLT--------------------------------------------------------------------  117 (1013)
T ss_pred             ceeeEEecCccc--------------------------------------------------------------------
Confidence            999998877654                                                                    


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC-ceeecCCCCCC--------CC---
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE-HTIIESHPDNT--------NP---  228 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~~~~p~~~--------~~---  228 (512)
                         .+|+++|++|+.|..+.+...+++++|++++|.||.+.+-|++|++|+|+|+ +++.+.....+        +.   
T Consensus       118 ---~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~p  194 (1013)
T KOG2012|consen  118 ---EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFTVLDPTGEEPLTGMIASISQDNP  194 (1013)
T ss_pred             ---HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceEEeCCCCCcchhhHHhhccCCCC
Confidence               3466777777777778888899999999999999999999999999999998 45555332211        00   


Q ss_pred             --------------C----------------------------------------------------CccccChhhHHHH
Q psy17422        229 --------------D----------------------------------------------------LRLDKPWPSLIQY  242 (512)
Q Consensus       229 --------------d----------------------------------------------------lr~~~p~p~L~~~  242 (512)
                                    |                                                    ......|.+|.+.
T Consensus       195 GvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~  274 (1013)
T KOG2012|consen  195 GVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSIGDTTEFGEYKKGGIFTQVKVPKTISFKSLREA  274 (1013)
T ss_pred             ceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEeccccchhhhhcCceeEEeecCceEecccHHHh
Confidence                          0                                                    0134567777777


Q ss_pred             HhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhc
Q psy17422        243 VDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSG  298 (512)
Q Consensus       243 ~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~~~~~i~~~  298 (512)
                      +..-++---|.....+-|-+.+..+||.+|++.|++.|.|-+.++..+|.+++.+.
T Consensus       275 L~~P~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~~l~~~i  330 (1013)
T KOG2012|consen  275 LKEPEFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELVELARDI  330 (1013)
T ss_pred             hcCCCeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHh
Confidence            76433222233334577888888999999999998888889999999999988764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.95  E-value=9.7e-28  Score=215.36  Aligned_cols=135  Identities=26%  Similarity=0.490  Sum_probs=119.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      ++++|+|+|+|++|++++++|+++||++|+|+|+|.|+++|++||||++.+|+|++||++++++|+++||.++++++...
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccc
Q psy17422         91 PQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSF  170 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  170 (512)
                      +.+                                                                   .+..++++++
T Consensus        81 ~~~-------------------------------------------------------------------~~~~~~~~~~   93 (135)
T PF00899_consen   81 IDE-------------------------------------------------------------------ENIEELLKDY   93 (135)
T ss_dssp             CSH-------------------------------------------------------------------HHHHHHHHTS
T ss_pred             ccc-------------------------------------------------------------------ccccccccCC
Confidence            640                                                                   0112345788


Q ss_pred             cEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEE
Q psy17422        171 HMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQ  212 (512)
Q Consensus       171 ~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~  212 (512)
                      |+||+|.++...+..++++|++.++|+|.+++.|+.|++++.
T Consensus        94 d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~~  135 (135)
T PF00899_consen   94 DIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVMV  135 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEEE
T ss_pred             CEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEC
Confidence            999999999999999999999999999999999999999763

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=99.95  E-value=3e-27  Score=242.82  Aligned_cols=147  Identities=21%  Similarity=0.268  Sum_probs=134.9

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccC--ChHHHHHHHHHHhhC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIG--KSRAEVATQLLLELN   79 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvG--k~ka~~~~~~l~~ln   79 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||++++++|+|  ++||++++++|+++|
T Consensus        14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in   93 (339)
T PRK07688         14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN   93 (339)
T ss_pred             cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999999999999995  599999999999999


Q ss_pred             CCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhh
Q psy17422         80 PDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVL  159 (512)
Q Consensus        80 p~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  159 (512)
                      |.++++++...+++                                                                  
T Consensus        94 p~v~v~~~~~~~~~------------------------------------------------------------------  107 (339)
T PRK07688         94 SDVRVEAIVQDVTA------------------------------------------------------------------  107 (339)
T ss_pred             CCcEEEEEeccCCH------------------------------------------------------------------
Confidence            99999988776640                                                                  


Q ss_pred             ccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        160 MANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       160 ~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                       .+..++++++|+||+|+|+..++..++++|++.++|++.+++.|++|++++..|+
T Consensus       108 -~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~  162 (339)
T PRK07688        108 -EELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPG  162 (339)
T ss_pred             -HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCC
Confidence             0112456789999999999999999999999999999999999999998887654

>KOG2013|consensus

Probab=99.95  E-value=2e-28  Score=249.09  Aligned_cols=155  Identities=25%  Similarity=0.423  Sum_probs=140.8

Q ss_pred             HHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeE
Q psy17422          5 HGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQG   84 (512)
Q Consensus         5 ~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i   84 (512)
                      +-++++.++|||+|||||+|||++|||++.|+++|+|||.|+|+.|||+|||||+.++||++||.++++..+..||.+++
T Consensus         5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l   84 (603)
T KOG2013|consen    5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL   84 (603)
T ss_pred             HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCC
Q psy17422         85 DFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDP  164 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  164 (512)
                      .++..++.+                                                                 . ..+.
T Consensus        85 ~~yhanI~e-----------------------------------------------------------------~-~fnv   98 (603)
T KOG2013|consen   85 VPYHANIKE-----------------------------------------------------------------P-KFNV   98 (603)
T ss_pred             EeccccccC-----------------------------------------------------------------c-chHH
Confidence            999888761                                                                 0 2345


Q ss_pred             CCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC-ceeecCCCCC
Q psy17422        165 NFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE-HTIIESHPDN  225 (512)
Q Consensus       165 ~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~~~~p~~  225 (512)
                      +||++||+|..+.|+.++|..+|++|...++|+|.+|+.||.|++++...+ -.++|+.|..
T Consensus        99 ~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~  160 (603)
T KOG2013|consen   99 EFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP  160 (603)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence            788899999999999999999999999999999999999999999999886 4566766554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=99.95  E-value=3.8e-27  Score=241.98  Aligned_cols=147  Identities=20%  Similarity=0.258  Sum_probs=134.8

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccC--ChHHHHHHHHHHhhC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIG--KSRAEVATQLLLELN   79 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvG--k~ka~~~~~~l~~ln   79 (512)
                      ||.+||++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||++++++|+|  ++||++++++|+++|
T Consensus        14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in   93 (338)
T PRK12475         14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN   93 (338)
T ss_pred             cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence            899999999999999999999999999999999999999999999999999999999999985  899999999999999


Q ss_pred             CCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhh
Q psy17422         80 PDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVL  159 (512)
Q Consensus        80 p~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  159 (512)
                      |+++++++...+++                                                                  
T Consensus        94 p~v~i~~~~~~~~~------------------------------------------------------------------  107 (338)
T PRK12475         94 SEVEIVPVVTDVTV------------------------------------------------------------------  107 (338)
T ss_pred             CCcEEEEEeccCCH------------------------------------------------------------------
Confidence            99999988766540                                                                  


Q ss_pred             ccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        160 MANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       160 ~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                       .+..++++++|+||+|+|+.+++..++++|++.++|+|.+++.|+.|++++..|+
T Consensus       108 -~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~  162 (338)
T PRK12475        108 -EELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPG  162 (338)
T ss_pred             -HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCC
Confidence             0112346789999999999999999999999999999999999999999887664

>KOG2012|consensus

Probab=99.94  E-value=3e-27  Score=253.03  Aligned_cols=180  Identities=23%  Similarity=0.340  Sum_probs=155.5

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCC-----eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHH
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVG-----SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLL   75 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~-----~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l   75 (512)
                      ++|..-|++|.+.|+.+||+|++|||.+||+++.|+|     .|++.|+|.|+.|||+|||+|++.||||+|++++++..
T Consensus       419 vfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~  498 (1013)
T KOG2012|consen  419 VFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAA  498 (1013)
T ss_pred             hhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHH
Confidence            4799999999999999999999999999999999994     69999999999999999999999999999999999999


Q ss_pred             HhhCCCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCc
Q psy17422         76 LELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN  155 (512)
Q Consensus        76 ~~lnp~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  155 (512)
                      +.+||+++|.++..++.+..                                                            
T Consensus       499 ~~mNp~l~I~a~~~rvgpeT------------------------------------------------------------  518 (1013)
T KOG2012|consen  499 RGMNPDLNIIALQNRVGPET------------------------------------------------------------  518 (1013)
T ss_pred             HhcCCCceeeehhhccCccc------------------------------------------------------------
Confidence            99999999999988876221                                                            


Q ss_pred             chhhccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCCCCCCCccccC
Q psy17422        156 PQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKP  235 (512)
Q Consensus       156 ~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~~~~dlr~~~p  235 (512)
                       +.|  .+.+||.+.|+|..+.|+.++|.++++.|.-+.+|++.+|+.|..|..++.+|.++  |+...+..|. -...|
T Consensus       519 -E~I--f~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlT--EsY~SS~DPP-EksiP  592 (1013)
T KOG2012|consen  519 -EHI--FNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLT--ESYGSSRDPP-EKSIP  592 (1013)
T ss_pred             -ccc--cchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecccc--ccccccCCCc-ccCCc
Confidence             112  35789999999999999999999999999999999999999999999999999865  2222111111 25778


Q ss_pred             hhhHHHHHhhc
Q psy17422        236 WPSLIQYVDSI  246 (512)
Q Consensus       236 ~p~L~~~~~~~  246 (512)
                      .|+|..|-..+
T Consensus       593 ~CTlknFPn~I  603 (1013)
T KOG2012|consen  593 VCTLKSFPNAI  603 (1013)
T ss_pred             eeeeccCchHH
Confidence            88888776544

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.94  E-value=1.1e-26  Score=225.83  Aligned_cols=137  Identities=23%  Similarity=0.396  Sum_probs=122.9

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||+++..+|+|++||++++++|+++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+.+                                                            ++.+.+  
T Consensus        81 ~~V~~~~~~i~~------------------------------------------------------------~~~~~l--   98 (231)
T cd00755          81 CEVDAVEEFLTP------------------------------------------------------------DNSEDL--   98 (231)
T ss_pred             cEEEEeeeecCH------------------------------------------------------------hHHHHH--
Confidence            999988776650                                                            000011  


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeec
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYG  204 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  204 (512)
                          +..+||+||+|.|+...+..++++|+++++|+|+++..|
T Consensus        99 ----~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g  137 (231)
T cd00755          99 ----LGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG  137 (231)
T ss_pred             ----hcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence                124699999999999999999999999999999976655

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.94  E-value=1.5e-26  Score=209.61  Aligned_cols=133  Identities=31%  Similarity=0.433  Sum_probs=122.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV   93 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~~   93 (512)
                      +|+|+|+||+|++++|+|+++|+++|+|+|+|.|+++|++||||++.+|+|++||++++++++++||.++++.+...+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999988776540


Q ss_pred             cccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccEE
Q psy17422         94 LMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMV  173 (512)
Q Consensus        94 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~V  173 (512)
                                                                                         .+..++++++|+|
T Consensus        81 -------------------------------------------------------------------~~~~~~~~~~diV   93 (143)
T cd01483          81 -------------------------------------------------------------------DNLDDFLDGVDLV   93 (143)
T ss_pred             -------------------------------------------------------------------hhHHHHhcCCCEE
Confidence                                                                               0113567889999


Q ss_pred             EEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEe
Q psy17422        174 ISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQI  213 (512)
Q Consensus       174 i~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  213 (512)
                      |+|.++.+.+..++++|+++++|+|.+++.|+.|+++++.
T Consensus        94 i~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          94 IDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             EECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence            9999999999999999999999999999999999999875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK14852 hypothetical protein; Provisional

Probab=99.94  E-value=1.7e-26  Score=258.07  Aligned_cols=148  Identities=20%  Similarity=0.278  Sum_probs=135.9

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|+|+.+||+|||+++.+|||++||++++++|+++||
T Consensus       321 lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP  400 (989)
T PRK14852        321 LVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNP  400 (989)
T ss_pred             hcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .++|+.+.+.+.+                                                                   
T Consensus       401 ~v~I~~~~~~I~~-------------------------------------------------------------------  413 (989)
T PRK14852        401 FLDIRSFPEGVAA-------------------------------------------------------------------  413 (989)
T ss_pred             CCeEEEEecCCCH-------------------------------------------------------------------
Confidence            9999999887750                                                                   


Q ss_pred             cCCCCCCccccEEEEcCCCh--HHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPE--TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~--~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      .+..+|++++|+||+|.|+.  +.+..+++.|++.+||+|.+++.|+.|++.+..++
T Consensus       414 en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~  470 (989)
T PRK14852        414 ETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG  470 (989)
T ss_pred             HHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC
Confidence            12345778899999998864  46678888899999999999999999999999875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.94  E-value=3.1e-26  Score=239.46  Aligned_cols=147  Identities=28%  Similarity=0.388  Sum_probs=135.5

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||||++++|+|++||++++++|+++||.
T Consensus       125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  204 (376)
T PRK08762        125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD  204 (376)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      +++..+...+.+                                                                   .
T Consensus       205 v~v~~~~~~~~~-------------------------------------------------------------------~  217 (376)
T PRK08762        205 VQVEAVQERVTS-------------------------------------------------------------------D  217 (376)
T ss_pred             CEEEEEeccCCh-------------------------------------------------------------------H
Confidence            999887765540                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +..++++++|+||.|+|+...+..++++|++.++|+|.+++.|+.|++.+..|.
T Consensus       218 ~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~  271 (376)
T PRK08762        218 NVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAG  271 (376)
T ss_pred             HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCC
Confidence            112356789999999999999999999999999999999999999999987664

>PRK14851 hypothetical protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=254.44  Aligned_cols=148  Identities=19%  Similarity=0.261  Sum_probs=136.7

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|+|+.+||+|||+++.+|+|++|+++++++|+++||
T Consensus        32 l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP  111 (679)
T PRK14851         32 LFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINP  111 (679)
T ss_pred             hcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .++|+.+...+++                                                                   
T Consensus       112 ~~~I~~~~~~i~~-------------------------------------------------------------------  124 (679)
T PRK14851        112 FLEITPFPAGINA-------------------------------------------------------------------  124 (679)
T ss_pred             CCeEEEEecCCCh-------------------------------------------------------------------
Confidence            9999999887760                                                                   


Q ss_pred             cCCCCCCccccEEEEcCCC--hHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        161 ANDPNFFQSFHMVISTNLP--ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      .+..+|+.++|+||+|.|+  .+.+..+++.|++.+||+|.+++.|+.|++.+..|+
T Consensus       125 ~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~  181 (679)
T PRK14851        125 DNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ  181 (679)
T ss_pred             HHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC
Confidence            1124567789999999986  467889999999999999999999999999999876

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.94  E-value=3.2e-26  Score=220.68  Aligned_cols=143  Identities=22%  Similarity=0.299  Sum_probs=127.9

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||+|+ .+|+|++||++++++|+++||+
T Consensus        18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~   96 (212)
T PRK08644         18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF   96 (212)
T ss_pred             cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence            899999999999999999999999999999999999999999999999999999876 6799999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+++                                                                   .
T Consensus        97 v~v~~~~~~i~~-------------------------------------------------------------------~  109 (212)
T PRK08644         97 VEIEAHNEKIDE-------------------------------------------------------------------D  109 (212)
T ss_pred             CEEEEEeeecCH-------------------------------------------------------------------H
Confidence            999988876650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhC-CCcEEEEeeeceeEEEEEE
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSL-NIPLLACRSYGFIGSIRLQ  212 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~  212 (512)
                      +..++++++|+||.|.|+.+.+..+++.|++. ++|+|.+...|.+|++...
T Consensus       110 ~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~  161 (212)
T PRK08644        110 NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSI  161 (212)
T ss_pred             HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEE
Confidence            12346788999999999999999999999999 9999998777666665433

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.93  E-value=4.2e-26  Score=225.61  Aligned_cols=137  Identities=23%  Similarity=0.424  Sum_probs=121.9

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.++|++|++++|+|+|+||+|++++++|+++|||+|||+|.|.|+.+|++||+++..+++|++||+++++++.++||
T Consensus        19 L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP   98 (268)
T PRK15116         19 LYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP   98 (268)
T ss_pred             HhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +++++.+...+.                                                            .++     
T Consensus        99 ~~~V~~i~~~i~------------------------------------------------------------~e~-----  113 (268)
T PRK15116         99 ECRVTVVDDFIT------------------------------------------------------------PDN-----  113 (268)
T ss_pred             CcEEEEEecccC------------------------------------------------------------hhh-----
Confidence            999998765443                                                            000     


Q ss_pred             cCCCCCC-ccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeec
Q psy17422        161 ANDPNFF-QSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYG  204 (512)
Q Consensus       161 ~~~~~~~-~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  204 (512)
                        ..+++ .+||+||+|.|+...+..++++|+++++|+|.++..|
T Consensus       114 --~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116        114 --VAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             --HHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence              11122 4699999999999999999999999999999874433

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=99.93  E-value=1.5e-25  Score=222.38  Aligned_cols=148  Identities=29%  Similarity=0.433  Sum_probs=136.9

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      +|.+||++|+.++|+++|+||+|++++++|+++|||+++|+|.|+|+.+||+||++++.+|+|++||+++++.++++||.
T Consensus        20 ~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~   99 (254)
T COG0476          20 IGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPL   99 (254)
T ss_pred             cCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCC
Confidence            34556999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      +++..+...+..                                                                   .
T Consensus       100 v~v~~~~~~l~~-------------------------------------------------------------------~  112 (254)
T COG0476         100 VEVVAYLERLDE-------------------------------------------------------------------E  112 (254)
T ss_pred             CeEEEeecccCh-------------------------------------------------------------------h
Confidence            999998877650                                                                   1


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCc
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEH  216 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  216 (512)
                      +..+++.++|+|++|+++.+++..+|+.|++.++|++++++.|+.|+++++.++.
T Consensus       113 ~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~  167 (254)
T COG0476         113 NAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGD  167 (254)
T ss_pred             hHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCC
Confidence            1246788999999999999999999999999999999999999999999998863

>KOG2017|consensus

Probab=99.92  E-value=1.8e-25  Score=219.90  Aligned_cols=193  Identities=20%  Similarity=0.242  Sum_probs=162.1

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      +|.+||.+|.+++|||||+||+||-++..|+.+|||++-|+|.|+|+.+|+.||.+.+++.+|+.||++++..++++||.
T Consensus        56 ~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~  135 (427)
T KOG2017|consen   56 FGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSH  135 (427)
T ss_pred             cccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      |++..+.+.+..                                                                   .
T Consensus       136 v~v~~y~~~L~~-------------------------------------------------------------------s  148 (427)
T KOG2017|consen  136 VEVQTYNEFLSS-------------------------------------------------------------------S  148 (427)
T ss_pred             ceeeechhhccc-------------------------------------------------------------------h
Confidence            999999887760                                                                   2


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCCCCCCCccccChhhHHH
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQ  241 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~~~~dlr~~~p~p~L~~  241 (512)
                      +..+.+++||+|++|+|+..+++.+++.|.-.++|++++...++.|++.++.-.          .-|..|+..|-|.=-+
T Consensus       149 Na~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~----------~GPCYRClFP~Ppp~~  218 (427)
T KOG2017|consen  149 NAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYN----------NGPCYRCLFPNPPPPE  218 (427)
T ss_pred             hHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecC----------CCceeeecCCCCcChH
Confidence            344568999999999999999999999999999999999999999999877321          1233344444443333


Q ss_pred             HHhhcCCCccccccccCccHHHHHHHHHHHHHHh
Q psy17422        242 YVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQ  275 (512)
Q Consensus       242 ~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~  275 (512)
                      .+.++.    |..-+.-++-++--++||+-.|-.
T Consensus       219 ~vt~C~----dgGVlGpv~GviG~mQALE~iKli  248 (427)
T KOG2017|consen  219 AVTNCA----DGGVLGPVTGVIGCMQALETIKLI  248 (427)
T ss_pred             Hhcccc----cCceeecchhhhhHHHHHHHHHHH
Confidence            333332    233456788888889999877654

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.92  E-value=9.5e-25  Score=216.68  Aligned_cols=151  Identities=16%  Similarity=0.160  Sum_probs=124.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCc--cCChHHHHHHHHHHhhCCCCeEEEEeCCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS--IGKSRAEVATQLLLELNPDCQGDFVDENP   91 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~d--vGk~ka~~~~~~l~~lnp~v~i~~~~~~~   91 (512)
                      ||+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|++||+|++.+|  +|++||++++++|+++||+|+++.+...+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999999988766


Q ss_pred             cccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCcccc
Q psy17422         92 QVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFH  171 (512)
Q Consensus        92 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  171 (512)
                      . .+                     |+|                    +....        ++.......+..++++++|
T Consensus        81 p-mp---------------------gh~--------------------~~~~~--------~~~~~~~~~~l~~li~~~D  110 (307)
T cd01486          81 P-MP---------------------GHP--------------------ISESE--------VPSTLKDVKRLEELIKDHD  110 (307)
T ss_pred             c-cc---------------------ccc--------------------ccccc--------ccccccCHHHHHHHHhhCC
Confidence            3 00                     000                    00000        0000000112345688999


Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        172 MVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       172 ~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +|++|+|+.+.|+.++.+|+..++|+|+ ...||.||+.+..+-
T Consensus       111 vV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~  153 (307)
T cd01486         111 VIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGA  153 (307)
T ss_pred             EEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCC
Confidence            9999999999999999999999999998 688999999988664

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.91  E-value=1.2e-24  Score=233.58  Aligned_cols=159  Identities=15%  Similarity=0.135  Sum_probs=131.6

Q ss_pred             HHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCcc---CChHHHHHHHHHHhhCCCC
Q psy17422          6 GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSI---GKSRAEVATQLLLELNPDC   82 (512)
Q Consensus         6 ~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dv---Gk~ka~~~~~~l~~lnp~v   82 (512)
                      +.++|++++|+|+|+||+||+++++|+++|||+|||||+|.|+.+|++||++++.+|+   |++||++++++|+++||+|
T Consensus       332 ~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v  411 (664)
T TIGR01381       332 QLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSI  411 (664)
T ss_pred             hHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCc
Confidence            4589999999999999999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             eEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccC
Q psy17422         83 QGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMAN  162 (512)
Q Consensus        83 ~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  162 (512)
                      +++++...+.                      ..|+|                    +.+.+        ++....-..+
T Consensus       412 ~i~~~~~~Ip----------------------m~Gh~--------------------i~~~~--------~~~~~~d~~~  441 (664)
T TIGR01381       412 QATGHRLTVP----------------------MPGHP--------------------IDEKD--------VPELEKDIAR  441 (664)
T ss_pred             EEEEeeeeec----------------------ccccc--------------------CCchh--------hhhccccHHH
Confidence            9999887753                      00000                    00000        0000000112


Q ss_pred             CCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        163 DPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       163 ~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      ..++++++|+|+.|+|+.++|+.++.+|..+++|+|++ ..||.||+.+..|-
T Consensus       442 l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~a-AlGfdg~lvmrhG~  493 (664)
T TIGR01381       442 LEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISA-ALGFDSYVVMRHGI  493 (664)
T ss_pred             HHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEE-EeccceEEEEEecc
Confidence            34567899999999999999999999999999999998 58999999998664

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.91  E-value=2.3e-24  Score=206.43  Aligned_cols=105  Identities=24%  Similarity=0.335  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.+||++|++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++. ++|++||++++++|+++||
T Consensus        15 LwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP   93 (287)
T PTZ00245         15 LWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNP   93 (287)
T ss_pred             HhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCC
Confidence            599999999999999999999999999999999999999999999999999999999997 6899999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCC
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCP  114 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~  114 (512)
                      +|+|+.+...++        --.+|++||.+..+
T Consensus        94 ~V~V~~i~~rld--------~~n~fqvvV~~~~~  119 (287)
T PTZ00245         94 HVSVYDAVTKLD--------GSSGTRVTMAAVIT  119 (287)
T ss_pred             CcEEEEcccccC--------CcCCceEEEEEccc
Confidence            999998887665        24488899887544

>KOG0593|consensus

Probab=99.90  E-value=2.4e-25  Score=216.69  Aligned_cols=149  Identities=23%  Similarity=0.294  Sum_probs=121.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |+|.||++++||+       .||||+....-.+..+..- +||  +|+.++|+|+|.+.++|          ..+     
T Consensus        16 GvV~KCrnk~Tgq-------IVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVF----------rrk-----   73 (396)
T KOG0593|consen   16 GVVMKCRNKDTGQ-------IVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVF----------RRK-----   73 (396)
T ss_pred             eEEEEeccCCccc-------EEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHH----------Hhc-----
Confidence            8999999999999       9999997655444444444 677  68999999999887777          111     


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.+..++++++.+.   +...+.|  ....+...++.|++|++.++++ |+++++|||||     |+||++.+ .+++|+
T Consensus        74 rklhLVFE~~dhTv---L~eLe~~--p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIK-----PENILit~-~gvvKL  142 (396)
T KOG0593|consen   74 RKLHLVFEYCDHTV---LHELERY--PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIK-----PENILITQ-NGVVKL  142 (396)
T ss_pred             ceeEEEeeecchHH---HHHHHhc--cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCC-----hhheEEec-CCcEEe
Confidence            12889999987553   2222233  4558899999999999999999 99999999999     99999986 499999


Q ss_pred             ecCCCCC--CCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSAS--WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar--~~~~~~~t~yv~tr~YraP  512 (512)
                      ||||+||  ..++..||.||+|||||||
T Consensus       143 CDFGFAR~L~~pgd~YTDYVATRWYRaP  170 (396)
T KOG0593|consen  143 CDFGFARTLSAPGDNYTDYVATRWYRAP  170 (396)
T ss_pred             ccchhhHhhcCCcchhhhhhhhhhccCh
Confidence            9999999  3377889999999999999

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.90  E-value=2.2e-23  Score=194.94  Aligned_cols=132  Identities=20%  Similarity=0.315  Sum_probs=117.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV   93 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~~   93 (512)
                      +|+|+|+||+|++++++|+++||++++|+|.|.|+.+|++||+++ .+|+|++||++++++|+++||.++++++...+.+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            699999999999999999999999999999999999999999965 6799999999999999999999999998876650


Q ss_pred             cccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccEE
Q psy17422         94 LMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMV  173 (512)
Q Consensus        94 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~V  173 (512)
                                                                                         .+..++++++|+|
T Consensus        80 -------------------------------------------------------------------~~~~~~l~~~DlV   92 (174)
T cd01487          80 -------------------------------------------------------------------NNLEGLFGDCDIV   92 (174)
T ss_pred             -------------------------------------------------------------------hhHHHHhcCCCEE
Confidence                                                                               1123567889999


Q ss_pred             EEcCCChHHHHHHHHHHHhC-CCcEEEEeeeceeEEEEEEe
Q psy17422        174 ISTNLPETTLIELSKTLWSL-NIPLLACRSYGFIGSIRLQI  213 (512)
Q Consensus       174 i~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~~  213 (512)
                      |.|.++.+.+..+++.|.+. ++|+|.+...|.+|++.+..
T Consensus        93 i~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~  133 (174)
T cd01487          93 VEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIK  133 (174)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEE
Confidence            99999999999888887777 99999999889888887654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.89  E-value=4.8e-23  Score=195.55  Aligned_cols=138  Identities=23%  Similarity=0.451  Sum_probs=123.7

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |+|.++.++|+++||+|+|+||+||-++..|+++|||+|+|||.|.|..+|+|||.-....++|++|+++++++++.+||
T Consensus        19 l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP   98 (263)
T COG1179          19 LYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINP   98 (263)
T ss_pred             HcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCC
Confidence            68999999999999999999999999999999999999999999999999999998777789999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .++++.....++                                                            +|+.+++ 
T Consensus        99 ~c~V~~~~~f~t------------------------------------------------------------~en~~~~-  117 (263)
T COG1179          99 ECEVTAINDFIT------------------------------------------------------------EENLEDL-  117 (263)
T ss_pred             CceEeehHhhhC------------------------------------------------------------HhHHHHH-
Confidence            999999888776                                                            1111122 


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeec
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYG  204 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  204 (512)
                           +..+||.||+|.|+......|-.+|+++++|+|+++-.|
T Consensus       118 -----~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179         118 -----LSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             -----hcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence                 234799999999999999999999999999999965544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.89  E-value=9.6e-23  Score=194.66  Aligned_cols=139  Identities=19%  Similarity=0.293  Sum_probs=117.5

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      .|.++|++|++++|+|+|+||+|++++++|+++||++++|+|.|.|+.+||+||++ ..+++|++|++++++.|+++||.
T Consensus        11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~inp~   89 (200)
T TIGR02354        11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEINPY   89 (200)
T ss_pred             cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999999999999999999999999999999975 56799999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+++                                                                   .
T Consensus        90 ~~i~~~~~~i~~-------------------------------------------------------------------~  102 (200)
T TIGR02354        90 TEIEAYDEKITE-------------------------------------------------------------------E  102 (200)
T ss_pred             CEEEEeeeeCCH-------------------------------------------------------------------h
Confidence            999988876650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHh-CCC-cEEEEeeeceeEEEE
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWS-LNI-PLLACRSYGFIGSIR  210 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~-~~i-p~i~~~~~G~~G~v~  210 (512)
                      +..++++++|+||.|.++.+++..+.+.|.+ .+. +++.  ..|+.||..
T Consensus       103 ~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~--~~g~~g~~~  151 (200)
T TIGR02354       103 NIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA--ASGLAGYDD  151 (200)
T ss_pred             HHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE--EeccccCCC
Confidence            1234577899999999999999887655544 444 5555  367777763

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07877 hypothetical protein; Provisional

Probab=99.88  E-value=7.6e-23  Score=226.42  Aligned_cols=138  Identities=20%  Similarity=0.272  Sum_probs=126.1

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN   79 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln   79 (512)
                      +||.++|++|++++|+|+|+| +|+.++.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+|++||++++++|+++|
T Consensus        96 ~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~in  173 (722)
T PRK07877         96 KITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELD  173 (722)
T ss_pred             hCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHC
Confidence            589999999999999999997 99999999999996 9999999999999999998 57889999999999999999999


Q ss_pred             CCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhh
Q psy17422         80 PDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVL  159 (512)
Q Consensus        80 p~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  159 (512)
                      |+++|+++...+++                                                                  
T Consensus       174 p~i~v~~~~~~i~~------------------------------------------------------------------  187 (722)
T PRK07877        174 PYLPVEVFTDGLTE------------------------------------------------------------------  187 (722)
T ss_pred             CCCEEEEEeccCCH------------------------------------------------------------------
Confidence            99999999988760                                                                  


Q ss_pred             ccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEE
Q psy17422        160 MANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSI  209 (512)
Q Consensus       160 ~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  209 (512)
                       ++..++++++|+|++|+|+.+++..+++.|.+.+||+|.++..|  |.+
T Consensus       188 -~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~  234 (722)
T PRK07877        188 -DNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLL  234 (722)
T ss_pred             -HHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCc
Confidence             12245677899999999999999999999999999999988655  666

>KOG0659|consensus

Probab=99.87  E-value=2.5e-23  Score=199.65  Aligned_cols=149  Identities=22%  Similarity=0.240  Sum_probs=130.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|||+|.......++..+ +||  +|+.++|+||+.+.+.|-               +.
T Consensus        16 gvVyka~d~~t~~-------~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~---------------~~   73 (318)
T KOG0659|consen   16 GVVYKARDTETGK-------RVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFP---------------HK   73 (318)
T ss_pred             EEEEEEEecCCCc-------EEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhcc---------------CC
Confidence            7899999999998       9999999988777788877 899  599999999999988881               11


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      --++.++++|.+|++..|+-..++     ..-..++.|+.++|+|+.| |.+.|.|||+|     |.|+++.. +|++|+
T Consensus        74 ~~l~lVfEfm~tdLe~vIkd~~i~-----l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlK-----PnNLLis~-~g~lKi  142 (318)
T KOG0659|consen   74 SNLSLVFEFMPTDLEVVIKDKNII-----LSPADIKSYMLMTLKGLAYCHSKWILHRDLK-----PNNLLISS-DGQLKI  142 (318)
T ss_pred             CceEEEEEeccccHHHHhcccccc-----cCHHHHHHHHHHHHHHHHHHHhhhhhcccCC-----ccceEEcC-CCcEEe
Confidence            228999999999999999877776     6677999999999999999 99999999999     99999975 599999


Q ss_pred             ecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+||.  .+....+..|.|||||||
T Consensus       143 ADFGLAr~f~~p~~~~~~~V~TRWYRAP  170 (318)
T KOG0659|consen  143 ADFGLARFFGSPNRIQTHQVVTRWYRAP  170 (318)
T ss_pred             ecccchhccCCCCcccccceeeeeccCh
Confidence            99999993  455556777999999998

>KOG0660|consensus

Probab=99.87  E-value=3.4e-23  Score=206.51  Aligned_cols=153  Identities=22%  Similarity=0.276  Sum_probs=127.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+.+.++.+|.       .||+|++.+.|+....... +||  +|+.++|+||+...+.|-.  .....|.       
T Consensus        36 GvVcsA~~~~t~~-------~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p--~~~~~f~-------   99 (359)
T KOG0660|consen   36 GVVCSAKDKRTGE-------KVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRP--PSRDKFN-------   99 (359)
T ss_pred             eeEEEEEEcCCCC-------EeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccc--ccccccc-------
Confidence            7889999999998       9999999999987666555 788  6999999999988877721  2233343       


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       -++.+.+.|++|+.++++-+      ......+++.+++|+|.||.| |+.+|+|||+|     |.|++++. ++.+|+
T Consensus       100 -DvYiV~elMetDL~~iik~~------~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLK-----PsNll~n~-~c~lKI  166 (359)
T KOG0660|consen  100 -DVYLVFELMETDLHQIIKSQ------QDLTDDHAQYFLYQILRGLKYIHSANVIHRDLK-----PSNLLLNA-DCDLKI  166 (359)
T ss_pred             -eeEEehhHHhhHHHHHHHcC------ccccHHHHHHHHHHHHHhcchhhcccccccccc-----hhheeecc-CCCEEe
Confidence             28999999999876666543      336677999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      ||||+||..    ....+|.||+|||||||
T Consensus       167 ~DFGLAR~~~~~~~~~~mTeYVaTRWYRAP  196 (359)
T KOG0660|consen  167 CDFGLARYLDKFFEDGFMTEYVATRWYRAP  196 (359)
T ss_pred             ccccceeeccccCcccchhcceeeeeecCH
Confidence            999999954    25568999999999998

>KOG0600|consensus

Probab=99.87  E-value=1e-22  Score=209.84  Aligned_cols=151  Identities=24%  Similarity=0.266  Sum_probs=128.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++++..+|.       .+|+|+|.........|.- +||  ||+.++||||+++.....          ++.+.  
T Consensus       131 g~VYkAr~~~tgk-------ivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt----------~~~~~--  191 (560)
T KOG0600|consen  131 GQVYKARDLETGK-------IVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVT----------SKLSG--  191 (560)
T ss_pred             hheeEeeecccCc-------EEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEE----------ecCCc--
Confidence            8899999999999       9999999887766777777 788  699999999999877651          11111  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       -++.++|||+.|+..++....+     .+...+++.||+|+|.||.| |.++|.|||||     .+||+++. .|.+||
T Consensus       192 -siYlVFeYMdhDL~GLl~~p~v-----kft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK-----~SNiLidn-~G~LKi  259 (560)
T KOG0600|consen  192 -SIYLVFEYMDHDLSGLLSSPGV-----KFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIK-----GSNILIDN-NGVLKI  259 (560)
T ss_pred             -eEEEEEecccchhhhhhcCCCc-----ccChHHHHHHHHHHHHHHHHHhhcCeeecccc-----ccceEEcC-CCCEEe
Confidence             2899999999998887765433     47888999999999999999 99999999999     99999975 599999


Q ss_pred             ecCCCCCC-C--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW-S--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~-~--~~~~~t~yv~tr~YraP  512 (512)
                      +||||||. .  ....||.-|+|+|||||
T Consensus       260 aDFGLAr~y~~~~~~~~T~rVvTLWYRpP  288 (560)
T KOG0600|consen  260 ADFGLARFYTPSGSAPYTSRVVTLWYRPP  288 (560)
T ss_pred             ccccceeeccCCCCcccccceEEeeccCh
Confidence            99999993 2  33469999999999998

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.86  E-value=4e-21  Score=187.53  Aligned_cols=164  Identities=17%  Similarity=0.177  Sum_probs=128.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCC-----C-----eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGV-----G-----SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv-----~-----~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +.++|+|||+||+||+++++|+++|+     |     +|+|+|+|.|+.+||+||+ |...|||++||++++++++..+ 
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~-   87 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM-   87 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc-
Confidence            67899999999999999999999973     4     8999999999999999995 5668999999999999999988 


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +++++++...+.+                                                                   
T Consensus        88 ~~~i~a~~~~~~~-------------------------------------------------------------------  100 (244)
T TIGR03736        88 GTDWTAHPERVER-------------------------------------------------------------------  100 (244)
T ss_pred             CceEEEEEeeeCc-------------------------------------------------------------------
Confidence            7888888776650                                                                   


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHh---CCCcEEEEeeeceeEEEEEEe-----CCc--e----eecCCCCCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWS---LNIPLLACRSYGFIGSIRLQI-----SEH--T----IIESHPDNT  226 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~---~~ip~i~~~~~G~~G~v~~~~-----~~~--~----~~~~~p~~~  226 (512)
                         ..++.++|+||.|.|+..++..+++.|.+   .++|++.++..+.-|++.+-.     ..+  .    +.+..|+..
T Consensus       101 ---~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~lP~vte~y~~~~  177 (244)
T TIGR03736       101 ---SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELI  177 (244)
T ss_pred             ---hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCceecCCchhhCcccc
Confidence               11245789999999999999999999988   258999999988888777654     121  1    122333321


Q ss_pred             C--CCCccccChhhHHHHHhhc
Q psy17422        227 N--PDLRLDKPWPSLIQYVDSI  246 (512)
Q Consensus       227 ~--~dlr~~~p~p~L~~~~~~~  246 (512)
                      .  ++..-..|.|+|.+.++.-
T Consensus       178 d~~~~~~~~~PsCsla~al~~Q  199 (244)
T TIGR03736       178 DPSVDPDDDRPSCSLAEALAKQ  199 (244)
T ss_pred             cCccCCCCCCCCchHHHHhcCc
Confidence            1  1123467888888877643

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>KOG0661|consensus

Probab=99.86  E-value=1.4e-22  Score=207.53  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=123.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHH--HhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASI--LNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~el--l~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |+|..+..+++|.       .+|||++++.+.+-.-.-.+||+  |+.++ ||||+.+.++|          ++.+.   
T Consensus        24 GsV~la~~~~~~~-------~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi----------~d~~~---   83 (538)
T KOG0661|consen   24 GSVYLAKSKETGE-------LVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVI----------RDNDR---   83 (538)
T ss_pred             eeEEEeeecCCCc-------eeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHh----------hccCc---
Confidence            8888888998888       79999999887654444457883  56666 99999888877          33332   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       -|+.+||+|++++.+.++-.     ...+.+..++.+|+|+++||.+ |.+|+.|||+|     |+||++. ++..+||
T Consensus        84 -~L~fVfE~Md~NLYqLmK~R-----~r~fse~~irnim~QilqGL~hiHk~GfFHRDlK-----PENiLi~-~~~~iKi  151 (538)
T KOG0661|consen   84 -ILYFVFEFMDCNLYQLMKDR-----NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLK-----PENILIS-GNDVIKI  151 (538)
T ss_pred             -eEeeeHHhhhhhHHHHHhhc-----CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCC-----hhheEec-ccceeEe
Confidence             39999999999876666532     2247889999999999999999 99999999999     9999986 3578999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||+||.. ...+||.||.|||||||
T Consensus       152 aDFGLARev~SkpPYTeYVSTRWYRAP  178 (538)
T KOG0661|consen  152 ADFGLAREVRSKPPYTEYVSTRWYRAP  178 (538)
T ss_pred             cccccccccccCCCcchhhhcccccch
Confidence            999999965 45679999999999999

>KOG0663|consensus

Probab=99.85  E-value=3.7e-22  Score=196.84  Aligned_cols=151  Identities=22%  Similarity=0.222  Sum_probs=128.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+|++++.+..       .+|+|++++.-...++|-. +||  +|...+|||||....+.             .+...
T Consensus        90 GiVYRakdk~t~e-------IVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVV-------------vG~~~  149 (419)
T KOG0663|consen   90 GVVYRAKDKKTDE-------IVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVV-------------VGSNM  149 (419)
T ss_pred             eeEEEeccCCcce-------eEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEE-------------ecccc
Confidence            7788888887777       9999999998888899988 899  57778999999877655             12333


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      --++.+|++|+.|+.+++.--.     ..+...+++.+|.|+|.|+.| |.+.|+|||+|     ++|+++.+ .|.+|+
T Consensus       150 d~iy~VMe~~EhDLksl~d~m~-----q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK-----~SNLLm~~-~G~lKi  218 (419)
T KOG0663|consen  150 DKIYIVMEYVEHDLKSLMETMK-----QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLK-----TSNLLLSH-KGILKI  218 (419)
T ss_pred             ceeeeeHHHHHhhHHHHHHhcc-----CCCchHHHHHHHHHHHHHHHHHhhceeEecccc-----hhheeecc-CCcEEe
Confidence            4489999999999988886322     246778999999999999999 99999999999     99999986 499999


Q ss_pred             ecCCCCC--CCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSAS--WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar--~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+||  ..+-.+||..|+|.|||||
T Consensus       219 aDFGLAR~ygsp~k~~T~lVVTLWYRaP  246 (419)
T KOG0663|consen  219 ADFGLAREYGSPLKPYTPLVVTLWYRAP  246 (419)
T ss_pred             cccchhhhhcCCcccCcceEEEeeecCH
Confidence            9999999  4566789999999999998

>PRK06153 hypothetical protein; Provisional

Probab=99.85  E-value=5.3e-21  Score=195.61  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=113.5

Q ss_pred             HHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCcc-ccCcCccCC--hHHHHHHHHHHhhCCC
Q psy17422          5 HGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNF-FLDVDSIGK--SRAEVATQLLLELNPD   81 (512)
Q Consensus         5 ~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f-~~~~~dvGk--~ka~~~~~~l~~lnp~   81 (512)
                      ..|++|++++|+||||||+||.++..|+++||++|+|+|.|.|+.+||+||+ +++.+|+|+  +||+++++++.++|+.
T Consensus       169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~  248 (393)
T PRK06153        169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG  248 (393)
T ss_pred             HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence            5699999999999999999999999999999999999999999999999998 568899999  9999999999999984


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                        +.++...+++                                                                    
T Consensus       249 --I~~~~~~I~~--------------------------------------------------------------------  258 (393)
T PRK06153        249 --IVPHPEYIDE--------------------------------------------------------------------  258 (393)
T ss_pred             --EEEEeecCCH--------------------------------------------------------------------
Confidence              4555544430                                                                    


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeee
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSY  203 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~  203 (512)
                      .....+.++|+||+|.|+.+.+..++++|.+.+||+|+++..
T Consensus       259 ~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~  300 (393)
T PRK06153        259 DNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG  300 (393)
T ss_pred             HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence            011245789999999999999999999999999999997763

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.83  E-value=2e-20  Score=190.56  Aligned_cols=132  Identities=17%  Similarity=0.084  Sum_probs=120.6

Q ss_pred             CC-HHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          2 WG-DHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         2 wG-~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      || .+||++|++++|+   +||+|+.++..|+. |||+|+|+|+|.|+.|||+  ++++++|+|++|+++++++|.++||
T Consensus        65 ~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp  138 (318)
T TIGR03603        65 LIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALEL  138 (318)
T ss_pred             cCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCC
Confidence            56 5599999999999   99999999999999 9999999999999999999  8999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      .++++...                                                                        
T Consensus       139 ~v~i~~~~------------------------------------------------------------------------  146 (318)
T TIGR03603       139 TKNVDELK------------------------------------------------------------------------  146 (318)
T ss_pred             CCEEeeHH------------------------------------------------------------------------
Confidence            99886421                                                                        


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHH--HHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIE--LSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~--l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                          +.++++|+|++|+|+..++..  ++++|.+.++|++.++..|+.|++....|.
T Consensus       147 ----~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~  199 (318)
T TIGR03603       147 ----DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPP  199 (318)
T ss_pred             ----HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCC
Confidence                235779999999999998866  999999999999999999999998876664

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>KOG0594|consensus

Probab=99.81  E-value=1.1e-20  Score=188.73  Aligned_cols=158  Identities=24%  Similarity=0.279  Sum_probs=132.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCC-CCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVN-LTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~n-i~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|.+++++.+|.       .+|+|+++......++|.. +||  +++.++|+| |+.+.+.++.--.         ..+
T Consensus        25 g~Vykar~~~~g~-------~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~---------~~~   88 (323)
T KOG0594|consen   25 GVVYKARSKRTGK-------FVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN---------HRG   88 (323)
T ss_pred             eEEEEEEEecCCC-------EEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccc---------ccc
Confidence            7899999999998       9999999988777789888 888  689999999 9999888852111         112


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..-++++++++..|+..|++....-.  ...+...++.+|+|+|.|+.| |+++|+|||+|     |+||++++ +|.+|
T Consensus        89 ~~~l~lvfe~~d~DL~~ymd~~~~~~--~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLK-----PQNlLi~~-~G~lK  160 (323)
T KOG0594|consen   89 IGKLYLVFEFLDRDLKKYMDSLPKKP--QGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLK-----PQNLLISS-SGVLK  160 (323)
T ss_pred             cceEEEEEEeecccHHHHHHhccccc--cCCCHHHHHHHHHHHHHHHHHHHhCCeecccCC-----cceEEECC-CCcEe
Confidence            23488999999999999987543111  246668999999999999999 99999999999     99999986 69999


Q ss_pred             EecCCCCC--CCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSAS--WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar--~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+||  ..+...++.-|+|.|||||
T Consensus       161 laDFGlAra~~ip~~~yt~evvTlWYRaP  189 (323)
T KOG0594|consen  161 LADFGLARAFSIPMRTYTPEVVTLWYRAP  189 (323)
T ss_pred             eeccchHHHhcCCcccccccEEEeeccCH
Confidence            99999999  4567779999999999998

>KOG0662|consensus

Probab=99.81  E-value=1.2e-20  Score=172.01  Aligned_cols=149  Identities=23%  Similarity=0.272  Sum_probs=129.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|++++++.+++       .+|+|.++..-...++|++ +||  +|+.++|.||+++.+..               +..
T Consensus        16 gtvfkarn~~t~e-------ivalkrvrlddddegvpssalreicllkelkhknivrl~dvl---------------hsd   73 (292)
T KOG0662|consen   16 GTVFKARNRETHE-------IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVL---------------HSD   73 (292)
T ss_pred             eeeEecccCCccc-------eEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhh---------------ccC
Confidence            7899999999999       9999999988888999999 899  68999999999887766               222


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+..+++++..++..|-.--+     ...|.+.++.+|.|+|+|+++ |++++.|||+|     |+|++++++ |.+|+
T Consensus        74 kkltlvfe~cdqdlkkyfdsln-----g~~d~~~~rsfmlqllrgl~fchshnvlhrdlk-----pqnllin~n-gelkl  142 (292)
T KOG0662|consen   74 KKLTLVFEFCDQDLKKYFDSLN-----GDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLK-----PQNLLINRN-GELKL  142 (292)
T ss_pred             ceeEEeHHHhhHHHHHHHHhcC-----CcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCC-----cceEEeccC-CcEEe
Confidence            3488999999888766654332     458999999999999999999 99999999999     999999865 99999


Q ss_pred             ecCCCCC--CCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSAS--WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar--~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||++|  ..+-..++.-|+|.|||+|
T Consensus       143 adfglarafgipvrcysaevvtlwyrpp  170 (292)
T KOG0662|consen  143 ADFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_pred             cccchhhhcCCceEeeeceeeeeeccCc
Confidence            9999999  4566778889999999998

>KOG0658|consensus

Probab=99.80  E-value=6.4e-21  Score=190.57  Aligned_cols=155  Identities=26%  Similarity=0.251  Sum_probs=124.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      |.|.++.-.+++.       .+|||+++.   +.+..+.--++|+.++|||||++...|.         ...+ .+..-+
T Consensus        38 g~Vyq~~~~e~~~-------~vAIKKv~~---d~r~knrEl~im~~l~HpNIV~L~~~f~---------~~~~-~d~~~l   97 (364)
T KOG0658|consen   38 GVVYQAKLRETEE-------EVAIKKVLQ---DKRYKNRELQIMRKLDHPNIVRLLYFFS---------SSTE-SDEVYL   97 (364)
T ss_pred             ceEEEEEEcCCCc-------eeEEEEecC---CCCcCcHHHHHHHhcCCcCeeeEEEEEE---------ecCC-CchhHH
Confidence            5566666666655       899999854   4556565566899999999998876662         1111 124567


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecC
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDF  489 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~Df  489 (512)
                      ..+|++|..++.++++-  ..+.+...+...|+-|++|++.|+.| |..+|.|||||     |+||+++..+|.+|||||
T Consensus        98 nlVleymP~tL~~~~r~--~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIK-----PqNlLvD~~tg~LKicDF  170 (364)
T KOG0658|consen   98 NLVLEYMPETLYRVIRH--YTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIK-----PQNLLVDPDTGVLKICDF  170 (364)
T ss_pred             HHHHHhchHHHHHHHHH--HhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCC-----hheEEEcCCCCeEEeccC
Confidence            88999999999888763  23445568889999999999999999 99999999999     999999999999999999


Q ss_pred             CCCC-CCCCCCccCeeeeeeeccC
Q psy17422        490 GSAS-WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       490 Glar-~~~~~~~t~yv~tr~YraP  512 (512)
                      |.|+ ..++++..+|++||+||||
T Consensus       171 GSAK~L~~~epniSYicSRyYRaP  194 (364)
T KOG0658|consen  171 GSAKVLVKGEPNISYICSRYYRAP  194 (364)
T ss_pred             CcceeeccCCCceeEEEeccccCH
Confidence            9998 4566777899999999999

>KOG0595|consensus

Probab=99.71  E-value=2.1e-18  Score=174.58  Aligned_cols=149  Identities=20%  Similarity=0.214  Sum_probs=121.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+|+.++..|.       .+|||.|.+.....+.-.. ..|  ||+.++|||||.+.+.+|           ..++  
T Consensus        24 avVykg~h~~~~~-------~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~-----------~~~~--   83 (429)
T KOG0595|consen   24 AVVYKGRHKKSGT-------EVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIE-----------DDDF--   83 (429)
T ss_pred             EEEEEeEeccCCc-------eEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEe-----------cCCe--
Confidence            6899999999998       9999999876322222121 344  799999999999888775           2222  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC-C---
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES-K---  481 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~-~---  481 (512)
                        ++.+|++|. +|+..|++-.      ...++..++.+|.|+..|+.+ |.++|+|||+|     |+||++... +   
T Consensus        84 --i~lVMEyC~gGDLs~yi~~~------~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLK-----PQNiLLs~~~~~~~  150 (429)
T KOG0595|consen   84 --IYLVMEYCNGGDLSDYIRRR------GRLPEATARHFMQQLASALQFLHENNIIHRDLK-----PQNILLSTTARNDT  150 (429)
T ss_pred             --EEEEEEeCCCCCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----cceEEeccCCCCCC
Confidence              899999998 7988888533      358889999999999999999 99999999999     999999764 2   


Q ss_pred             -CeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 -LVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 -~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                       -.+|++|||+||.. ++....+.+|++.||||
T Consensus       151 ~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAP  183 (429)
T KOG0595|consen  151 SPVLKIADFGFARFLQPGSMAETLCGSPLYMAP  183 (429)
T ss_pred             CceEEecccchhhhCCchhHHHHhhCCccccCH
Confidence             36899999999954 45556789999999998

>KOG0581|consensus

Probab=99.70  E-value=2.4e-18  Score=172.57  Aligned_cols=149  Identities=20%  Similarity=0.323  Sum_probs=119.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|.+++|+-++.       .-|+|.|....++ .+-.+ ++|  +++..+||+||.....|+          .   .+.
T Consensus        93 G~V~kv~Hk~t~~-------i~AlK~I~~~~~~-~~~~Qi~rEl~il~~~~spyIV~~ygaF~----------~---~~~  151 (364)
T KOG0581|consen   93 GTVYKVRHKPTGK-------IYALKVILLNIDP-ALQKQILRELEILRSCQSPYIVGFYGAFY----------S---NGE  151 (364)
T ss_pred             cEEEEEEEcCCCe-------EEEEEeecccCCH-HHHHHHHHHHHHHhhCCCCCeeeEeEEEE----------e---CCc
Confidence            8899999999999       8899998543332 22233 566  688889999998777773          2   122


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-C-CCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P-SSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h-~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++..||||...+     |..+|+.....++..+..+..++|+||.| | ..+|+|||||     |+||+++. +|.+|
T Consensus       152 -~isI~mEYMDgGS-----Ld~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIK-----PsNlLvNs-kGeVK  219 (364)
T KOG0581|consen  152 -EISICMEYMDGGS-----LDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIK-----PSNLLVNS-KGEVK  219 (364)
T ss_pred             -eEEeehhhcCCCC-----HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCC-----HHHeeecc-CCCEE
Confidence             3889999999654     45555554568888999999999999999 8 4999999999     99999985 69999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |||||.+.....+...+||||.+||||
T Consensus       220 icDFGVS~~lvnS~a~tfvGT~~YMsP  246 (364)
T KOG0581|consen  220 ICDFGVSGILVNSIANTFVGTSAYMSP  246 (364)
T ss_pred             eccccccHHhhhhhcccccccccccCh
Confidence            999999986555567899999999998

>KOG0669|consensus

Probab=99.68  E-value=2.6e-17  Score=157.27  Aligned_cols=175  Identities=19%  Similarity=0.176  Sum_probs=135.0

Q ss_pred             HHHHHHHhhhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchh
Q psy17422        313 FEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPF  389 (512)
Q Consensus       313 f~ea~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~f  389 (512)
                      .+|.-+|..++.+.+-.-+.|++++.+.+|.       .+|+|++.......+.|.. +++  +|..++|+|++.+-+. 
T Consensus        13 ~~~~~~yek~~kigqGtfgeVFkAr~~n~~k-------kvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEi-   84 (376)
T KOG0669|consen   13 CDEVSKYEKLAKIGQGTFGEVFKARSKNTGK-------KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI-   84 (376)
T ss_pred             eecchHHHHHHhcCCchHHHHHHHhhcCccc-------hhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHH-
Confidence            3444556666666555568899999999998       8999999888778889888 888  6999999999854322 


Q ss_pred             hhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhh
Q psy17422        390 WILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLF  468 (512)
Q Consensus       390 w~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~F  468 (512)
                         +   +.|-......+..++.++-.++.|+..++.-.     +.++...+++.+|++++.||.| |.+.|+|||+|  
T Consensus        85 ---c---~tk~Tp~~r~r~t~ylVf~~cehDLaGlLsn~-----~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmK--  151 (376)
T KOG0669|consen   85 ---C---RTKATPTNRDRATFYLVFDFCEHDLAGLLSNR-----KVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMK--  151 (376)
T ss_pred             ---H---hhccCCcccccceeeeeHHHhhhhHHHHhcCc-----cccccHHHHHHHHHHHHHHHHHHHHhhHHhhccc--
Confidence               2   22322222223447888888888877665422     2357888999999999999999 99999999999  


Q ss_pred             ccccccccccCCCCeEEEecCCCCCCC------CCCCccCeeeeeeeccC
Q psy17422        469 CRNASFIHVNESKLVLKLCDFGSASWS------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       469 c~n~~nIll~~~~~~~Kl~DfGlar~~------~~~~~t~yv~tr~YraP  512 (512)
                         ++|++++.. +++|++|||++|..      ....||..|+|.|||+|
T Consensus       152 ---aaNvLIt~d-gilklADFGlar~fs~~~n~~kprytnrvvTLwYrpp  197 (376)
T KOG0669|consen  152 ---AANVLITKD-GILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPP  197 (376)
T ss_pred             ---HhhEEEcCC-ceEEeeccccccceecccccCCCCcccceeeeecCCH
Confidence               999999754 99999999999821      13358999999999998

>KOG2018|consensus

Probab=99.68  E-value=9.3e-17  Score=156.67  Aligned_cols=137  Identities=15%  Similarity=0.259  Sum_probs=120.0

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      +|.+||.+|+++-|+|||+||+|+-++-.|+++|+++|.|+|.|.|+.+.|+|+--..-.|||.||+.++.++++++.|.
T Consensus        64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw  143 (430)
T KOG2018|consen   64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW  143 (430)
T ss_pred             hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc
Confidence            69999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++|.+..+-.+.  ++                                                          .+++  
T Consensus       144 ~eIdar~~l~~~--~s----------------------------------------------------------~edl--  161 (430)
T KOG2018|consen  144 CEIDARNMLWTS--SS----------------------------------------------------------EEDL--  161 (430)
T ss_pred             ceecHHHhhcCC--Cc----------------------------------------------------------hhhh--
Confidence            999876655540  00                                                          0122  


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeec
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYG  204 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  204 (512)
                          .+.+-|.|++|.|+.++..-+-++|.++++++|++.-.+
T Consensus       162 ----l~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaa  200 (430)
T KOG2018|consen  162 ----LSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAA  200 (430)
T ss_pred             ----hcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCcc
Confidence                234568899999999999999999999999999854433

>KOG0615|consensus

Probab=99.65  E-value=4.5e-17  Score=164.88  Aligned_cols=149  Identities=19%  Similarity=0.169  Sum_probs=116.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC---CchH--H-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT---VPSS--V-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDN  402 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~---i~~~--~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~  402 (512)
                      +.|..+.++.+|+       .+|+|.+++......   ....  + +|  ||+.++|||||+..+.|           +.
T Consensus       186 g~Vkla~e~~tgk-------~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f-----------~~  247 (475)
T KOG0615|consen  186 GLVKLAYEKKTGK-------QVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFF-----------EV  247 (475)
T ss_pred             eEEEEEEEcccCc-------EEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeee-----------ec
Confidence            6688899999999       999999987653221   1111  2 33  89999999999888766           33


Q ss_pred             CCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC
Q psy17422        403 EGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       403 ~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      ...    .+++|++|. +++-+.|--.      ...++..-+.|.+|+|.++.| |+.||+|||||     |+||++...
T Consensus       248 ~ds----~YmVlE~v~GGeLfd~vv~n------k~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiK-----PeNILl~~~  312 (475)
T KOG0615|consen  248 PDS----SYMVLEYVEGGELFDKVVAN------KYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIK-----PENILLSND  312 (475)
T ss_pred             CCc----eEEEEEEecCccHHHHHHhc------cccccchhHHHHHHHHHHHHHHHHcCcccccCC-----cceEEeccC
Confidence            222    699999998 5665554322      224555678999999999999 99999999999     999999644


Q ss_pred             --CCeEEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        481 --KLVLKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 --~~~~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                        +..+|++|||+|.. .+.+.|.+.|||+.|.||
T Consensus       313 ~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAP  347 (475)
T KOG0615|consen  313 AEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAP  347 (475)
T ss_pred             CcceEEEecccchhhccccceehhhhcCCccccCh
Confidence              36899999999984 367788999999999998

>KOG0666|consensus

Probab=99.64  E-value=3e-16  Score=153.86  Aligned_cols=144  Identities=19%  Similarity=0.180  Sum_probs=118.3

Q ss_pred             ChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHH
Q psy17422        349 NFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYI  425 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv  425 (512)
                      +..-|+|++......++++.+ +||  +++.++|+|++.+-.+|          +..    ...++..+++-+.|+-.+|
T Consensus        53 ~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vf----------l~~----d~~v~l~fdYAEhDL~~II  118 (438)
T KOG0666|consen   53 TKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVF----------LSH----DKKVWLLFDYAEHDLWHII  118 (438)
T ss_pred             chhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHH----------hcc----CceEEEEehhhhhhHHHHH
Confidence            347799999877677788877 899  68999999999776666          321    2348999999999999999


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC---CCeEEEecCCCCCC--CCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES---KLVLKLCDFGSASW--SHENE  499 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~---~~~~Kl~DfGlar~--~~~~~  499 (512)
                      +....-+.+ ......|+.++.|+|.|++| |++.|.|||+|     |+||++.-+   +|.+||+|+|+||.  ++-.+
T Consensus       119 ~fHr~~~~~-~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLK-----PaNIlvmgdgperG~VKIaDlGlaR~~~~plkp  192 (438)
T KOG0666|consen  119 KFHRASKAK-QLPRSMVKSILWQILDGVHYLHSNWVLHRDLK-----PANILVMGDGPERGRVKIADLGLARLFNNPLKP  192 (438)
T ss_pred             HHhccchhc-cCCHHHHHHHHHHHHhhhHHHhhhheeeccCC-----cceEEEeccCCccCeeEeecccHHHHhhccccc
Confidence            877665553 67889999999999999999 99999999999     999999632   48999999999993  33222


Q ss_pred             ---ccCeeeeeeeccC
Q psy17422        500 ---ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ---~t~yv~tr~YraP  512 (512)
                         ....|+|.|||||
T Consensus       193 l~s~d~VVVTiWYRAP  208 (438)
T KOG0666|consen  193 LASLDPVVVTIWYRAP  208 (438)
T ss_pred             cccCCceEEEEEecCh
Confidence               3468999999998

>KOG2336|consensus

Probab=99.63  E-value=1.7e-15  Score=145.73  Aligned_cols=153  Identities=18%  Similarity=0.254  Sum_probs=126.7

Q ss_pred             HHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422          7 QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus         7 Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      -.|++...|.|+|.||+|+-+|..|.+.|||++.+.|.|+|+..|.+|-| |+++..|-+|++++++.|.++||+|.++.
T Consensus        77 YErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~iE~  155 (422)
T KOG2336|consen   77 YERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVIEV  155 (422)
T ss_pred             HHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEEEE
Confidence            46899999999999999999999999999999999999999999999965 67889999999999999999999999999


Q ss_pred             EeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNF  166 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  166 (512)
                      +.-+++                               +++++.        +.+.++..                ....-
T Consensus       156 hn~NIT-------------------------------TvenFd--------~F~~~is~----------------g~~~~  180 (422)
T KOG2336|consen  156 HNYNIT-------------------------------TVENFD--------TFTDRISN----------------GSLCP  180 (422)
T ss_pred             eeccee-------------------------------eehhHH--------HHHHHhhc----------------CCCCC
Confidence            988886                               111111        11111111                11111


Q ss_pred             CccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeee--ceeEEEEEEeCC
Q psy17422        167 FQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSY--GFIGSIRLQISE  215 (512)
Q Consensus       167 ~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~--G~~G~v~~~~~~  215 (512)
                      -+..|+|..|.|+.+++..++..|.+.+.-++..+++  ...|++++..|+
T Consensus       181 gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PG  231 (422)
T KOG2336|consen  181 GKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPG  231 (422)
T ss_pred             CCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCC
Confidence            2458999999999999999999999999999887775  668999999887

>KOG2337|consensus

Probab=99.61  E-value=1e-15  Score=157.81  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=129.6

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCcc---CChHHHHHHHHHHhhCCCCeE
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSI---GKSRAEVATQLLLELNPDCQG   84 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dv---Gk~ka~~~~~~l~~lnp~v~i   84 (512)
                      .++.+.|+|++|+|.+||.||+||..+||++||++|..+|+.+|-.||-+++.+|.   |++||++++++|++++|.+..
T Consensus       336 d~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~a  415 (669)
T KOG2337|consen  336 DIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEA  415 (669)
T ss_pred             hhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccc
Confidence            57899999999999999999999999999999999999999999999999999886   599999999999999999998


Q ss_pred             EEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCC
Q psy17422         85 DFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDP  164 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  164 (512)
                      +.+..++.                      --|+|-...+++.                            +...++...
T Consensus       416 tG~~lsIP----------------------MpGH~I~e~~~e~----------------------------~~~D~~~Le  445 (669)
T KOG2337|consen  416 TGYVLSIP----------------------MPGHPIGESLLEQ----------------------------TKKDLKRLE  445 (669)
T ss_pred             cceEEecc----------------------CCCCccchhhHHH----------------------------HHHHHHHHH
Confidence            88877665                      1122211111111                            111112234


Q ss_pred             CCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        165 NFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       165 ~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      +.+++.|+|+..+|+.+.|+.-.-++-..++-+|+ ...||..|+.+..|.
T Consensus       446 ~LI~~HDviFLLtDsRESRWLPtll~a~~~KivIN-aALGFDsylVMRHG~  495 (669)
T KOG2337|consen  446 QLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVIN-AALGFDSYLVMRHGT  495 (669)
T ss_pred             HHHhhcceEEEEeccchhhhhHHHHHhhhcceEee-eecccceeEEEecCC
Confidence            56789999999999999999999998888999998 678999999998775

>KOG0665|consensus

Probab=99.61  E-value=1.2e-16  Score=157.34  Aligned_cols=172  Identities=26%  Similarity=0.310  Sum_probs=138.2

Q ss_pred             CccHHHHHHHhhhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCch-HHHH--HHhhCCCCCCCcCC
Q psy17422        310 EENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPS-SVAS--ILNDNACVNLTSKS  386 (512)
Q Consensus       310 e~nf~ea~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~-~~~e--ll~~~~~~ni~~~~  386 (512)
                      +..|.+-.||+.+.....--+ .|.-+.+--.+.       .+|+|++-+.++...-.. ..+|  ++..++|+|++++.
T Consensus        10 ~s~ftv~~Ry~nL~p~~~g~~-~v~~a~D~v~~~-------~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~   81 (369)
T KOG0665|consen   10 SSTFTVPKRYVNLKPIGSGAQ-IVVAAFDQVLGR-------PVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLL   81 (369)
T ss_pred             CcceeeeeeeeeecccCCCCc-eEEecchhhccC-------ceehhhhcCccccCccchhhhhhhhhhhhhcccceeeee
Confidence            367777778877766533222 566666766676       899999988877543333 3677  57788999999887


Q ss_pred             chhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHH
Q psy17422        387 EPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQV  465 (512)
Q Consensus       387 ~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdI  465 (512)
                      +.| +..+.+..|.+        ++.+++.|..++.+.+.+        +.|-..++.+++|.+.++.+ |+.+|+|||+
T Consensus        82 n~f-tP~~~l~~~~e--------~y~v~e~m~~nl~~vi~~--------elDH~tis~i~yq~~~~ik~lhs~~IihRdL  144 (369)
T KOG0665|consen   82 NVF-TPQKTLEEFQE--------VYLVMELMDANLCQVILM--------ELDHETISYILYQMLCGIKHLHSAGIIHRDL  144 (369)
T ss_pred             ecc-CccccHHHHHh--------HHHHHHhhhhHHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHhcceeeccc
Confidence            665 78888888875        789999999988888763        37888999999999999999 9999999999


Q ss_pred             HhhccccccccccCCCCeEEEecCCCCCCCCCC-CccCeeeeeeeccC
Q psy17422        466 KLFCRNASFIHVNESKLVLKLCDFGSASWSHEN-EITPYLVSRFYRAP  512 (512)
Q Consensus       466 K~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~-~~t~yv~tr~YraP  512 (512)
                      |     |+||.+. .++.+|++|||+|+..... .+|.||+||+||||
T Consensus       145 k-----Psnivv~-~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrap  186 (369)
T KOG0665|consen  145 K-----PSNIVVN-SDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAP  186 (369)
T ss_pred             C-----cccceec-chhheeeccchhhcccCcccccCchhheeeccCc
Confidence            9     9999886 4699999999999954433 68999999999998

>KOG0591|consensus

Probab=99.57  E-value=2.6e-16  Score=152.60  Aligned_cols=154  Identities=17%  Similarity=0.245  Sum_probs=114.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |+|.|+.+.-+|.       -+|.|.+.-..-+.+--.. +.|  ||+.++||||++...         ..|.+..    
T Consensus        33 g~vykv~~~~~g~-------l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~---------~~f~~~~----   92 (375)
T KOG0591|consen   33 GEVYKVQCLLDGK-------LVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYA---------HSFIEDN----   92 (375)
T ss_pred             hheEEeeeccCcc-------hhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHH---------Hhhhccc----
Confidence            7788888888888       8999998732222222222 455  799999999995432         1233221    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC--C--CCChHHHHhhccccccccccCCC
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS--S--AITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~--~--~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      --|+.+|+++. +|+.+.|+-.  -+++....+..|..|+.|++.+|.+ |.  .  .|+|||||     |.||.++ .+
T Consensus        93 evlnivmE~c~~GDLsqmIk~~--K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIK-----PaNIFl~-~~  164 (375)
T KOG0591|consen   93 EVLNIVMELCDAGDLSQMIKHF--KKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIK-----PANIFLT-AN  164 (375)
T ss_pred             hhhHHHHHhhcccCHHHHHHHH--HhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCc-----chheEEc-CC
Confidence            12778899987 6887777422  2345568899999999999999987 87  4  49999999     9999997 46


Q ss_pred             CeEEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |.+|+.|||++|..  .....++||||++||+|
T Consensus       165 gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSP  197 (375)
T KOG0591|consen  165 GVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSP  197 (375)
T ss_pred             CceeeccchhHhHhcchhHHHHhhcCCCcccCH
Confidence            99999999999943  34456799999999998

>KOG0033|consensus

Probab=99.51  E-value=1.4e-14  Score=138.10  Aligned_cols=149  Identities=19%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|.+|+++.+|+       .-|+|.++...-.. +...--+|  |.+.++||||+.+.+.+           ..++.  
T Consensus        25 SvVrRc~~~~tg~-------~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti-----------~~~~~--   84 (355)
T KOG0033|consen   25 SVVRRCVHKTTGL-------EFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI-----------QEESF--   84 (355)
T ss_pred             HHHHHHHhccchH-------HHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhh-----------cccce--
Confidence            7789999999999       88999987654322 22222344  88999999999988776           33333  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC--Ce
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK--LV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~--~~  483 (512)
                        .+.+++.|+. ++..=|--..+|      .++.+.-|++|+|.++.| |.++|+|||+|     |.|+++....  --
T Consensus        85 --~ylvFe~m~G~dl~~eIV~R~~y------SEa~aSH~~rQiLeal~yCH~n~IvHRDvk-----P~nllLASK~~~A~  151 (355)
T KOG0033|consen   85 --HYLVFDLVTGGELFEDIVAREFY------SEADASHCIQQILEALAYCHSNGIVHRDLK-----PENLLLASKAKGAA  151 (355)
T ss_pred             --eEEEEecccchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCceeccCC-----hhheeeeeccCCCc
Confidence              7889999985 443222122333      455778899999999999 99999999999     9999985432  35


Q ss_pred             EEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+|.. ..+.....++||+.|+||
T Consensus       152 vKL~~FGvAi~l~~g~~~~G~~GtP~fmaP  181 (355)
T KOG0033|consen  152 VKLADFGLAIEVNDGEAWHGFAGTPGYLSP  181 (355)
T ss_pred             eeecccceEEEeCCccccccccCCCcccCH
Confidence            89999999974 345566789999999998

>KOG0598|consensus

Probab=99.51  E-value=1.2e-14  Score=146.11  Aligned_cols=149  Identities=22%  Similarity=0.206  Sum_probs=115.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+-.+++.+|.       .-|+|.+++..-..  .+.....|  ||...+||.||.+...|           ++.+. 
T Consensus        39 GkV~~Vrk~dt~k-------iYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysF-----------Qt~~k-   99 (357)
T KOG0598|consen   39 GKVFQVRKKDTGK-------IYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSF-----------QTEEK-   99 (357)
T ss_pred             ceEEEEEEcccCc-------eeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEec-----------ccCCe-
Confidence            6777888888888       88999998764222  22222333  89999999999888777           33333 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                         |+.++++|...-     |....+++..+++..++.|+.+++.||+| |..+|+|||+|     |+||+++. .|.++
T Consensus       100 ---LylVld~~~GGe-----Lf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlK-----PENILLd~-~GHi~  165 (357)
T KOG0598|consen  100 ---LYLVLDYLNGGE-----LFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLK-----PENILLDE-QGHIK  165 (357)
T ss_pred             ---EEEEEeccCCcc-----HHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCC-----HHHeeecC-CCcEE
Confidence               999999998632     33333445668888999999999999999 99999999999     99999985 59999


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++...  .+..-.++|||+-||||
T Consensus       166 LtDFgL~k~~~~~~~~t~tfcGT~eYmAP  194 (357)
T KOG0598|consen  166 LTDFGLCKEDLKDGDATRTFCGTPEYMAP  194 (357)
T ss_pred             EeccccchhcccCCCccccccCCccccCh
Confidence            9999999843  23344568999999999

>KOG0597|consensus

Probab=99.48  E-value=7.2e-15  Score=153.71  Aligned_cols=148  Identities=20%  Similarity=0.178  Sum_probs=120.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      ++|+|.++|.+++       -+|+|.+.+.-.+.+.-.++ +|  |++.++||||+...+.|           +...+  
T Consensus        16 g~VYKgrrK~t~~-------~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esf-----------Et~~~--   75 (808)
T KOG0597|consen   16 GRVYKGRRKYTIQ-------VVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESF-----------ETSAH--   75 (808)
T ss_pred             ceeeeccccccee-------EEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhh-----------cccce--
Confidence            7899999999999       99999998876655444444 33  89999999999766666           33333  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                        +..+.+++.+++..|+.      ......++.++.+..+++.+|.| |+++|.|||+|     |+||++..+ +.+|+
T Consensus        76 --~~vVte~a~g~L~~il~------~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~k-----PqniLl~~~-~~~Kl  141 (808)
T KOG0597|consen   76 --LWVVTEYAVGDLFTILE------QDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMK-----PQNILLEKG-GTLKL  141 (808)
T ss_pred             --EEEEehhhhhhHHHHHH------hccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCC-----cceeeecCC-Cceee
Confidence              78899998887655553      44458899999999999999999 99999999999     999999765 89999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ||||+||...  ....+..-||+.||||
T Consensus       142 cdFg~Ar~m~~~t~vltsikGtPlYmAP  169 (808)
T KOG0597|consen  142 CDFGLARAMSTNTSVLTSIKGTPLYMAP  169 (808)
T ss_pred             chhhhhhhcccCceeeeeccCcccccCH
Confidence            9999999543  3346777899999998

>KOG0575|consensus

Probab=99.48  E-value=1.3e-14  Score=153.67  Aligned_cols=148  Identities=18%  Similarity=0.128  Sum_probs=112.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      ..++++.+-++|+       .+|+|-|.+.. +....-.. .+|  |.+.++|||||+..+.|           ++..+ 
T Consensus        32 A~cYe~~~~~tge-------~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~F-----------EDs~n-   92 (592)
T KOG0575|consen   32 ARCYEARDLDTGE-------VVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFF-----------EDSNN-   92 (592)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEe-----------ecCCc-
Confidence            3567777878888       99999986542 22222222 334  78889999999887776           33334 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         ++.++|.|.- ++..+.+      .....++.+++.|++|++.|+.| |+.+|+|||+|     ..||+++.. -.+
T Consensus        93 ---VYivLELC~~~sL~el~K------rrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLK-----LGNlfL~~~-~~V  157 (592)
T KOG0575|consen   93 ---VYIVLELCHRGSLMELLK------RRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLK-----LGNLFLNEN-MNV  157 (592)
T ss_pred             ---eEEEEEecCCccHHHHHH------hcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccc-----hhheeecCc-CcE
Confidence               9999999874 3333332      23357888999999999999999 99999999999     999999754 689


Q ss_pred             EEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      ||+|||||..  .++..-.+.|||+-|.||
T Consensus       158 KIgDFGLAt~le~~~Erk~TlCGTPNYIAP  187 (592)
T KOG0575|consen  158 KIGDFGLATQLEYDGERKKTLCGTPNYIAP  187 (592)
T ss_pred             EecccceeeeecCcccccceecCCCcccCh
Confidence            9999999873  343444568999999998

>KOG0664|consensus

Probab=99.47  E-value=1.9e-15  Score=145.93  Aligned_cols=153  Identities=23%  Similarity=0.268  Sum_probs=111.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.||..-+-.-|.       .+|+|++-..+++-.-... .+|  +|...+|.|+.+..+.   +--+--.|.+.     
T Consensus        67 GVVWsVTDPRdgr-------rvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDI---LQPph~dfFqE-----  131 (449)
T KOG0664|consen   67 GVVWSVTDPRSGK-------RVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDI---LQPANPSFFQE-----  131 (449)
T ss_pred             eEEEeccCCCCcc-------chhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHh---cCCCCchHHHH-----
Confidence            5666666666676       8889988776654322223 455  5677789888754332   11111223332     


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                        ++.+-+.|.+|      |.+++.+......+.|+.+++|+|.||.| |+.+|.|||||     |.|++++. ++++||
T Consensus       132 --iYV~TELmQSD------LHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIK-----PGNLLVNS-NCvLKI  197 (449)
T KOG0664|consen  132 --LYVLTELMQSD------LHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIK-----PGNLLVNS-NCILKI  197 (449)
T ss_pred             --HHHHHHHHHhh------hhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCC-----CccEEecc-CceEEe
Confidence              55566777776      45666665567888999999999999999 99999999999     99999975 599999


Q ss_pred             ecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      ||||+||..+   ...||.-|+|.+||||
T Consensus       198 CDFGLARvee~d~~~hMTqEVVTQYYRAP  226 (449)
T KOG0664|consen  198 CDFGLARTWDQRDRLNMTHEVVTQYYRAP  226 (449)
T ss_pred             cccccccccchhhhhhhHHHHHHHHhccH
Confidence            9999999432   3468999999999998

>KOG0578|consensus

Probab=99.44  E-value=2.6e-14  Score=150.17  Aligned_cols=150  Identities=17%  Similarity=0.231  Sum_probs=112.4

Q ss_pred             hhhccccCCCCCCC----cChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        334 ARIRKDENGIPLSE----ENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       334 ~~~~~~~~~~~~~~----~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      .++...++|.+|..    ++..+|+|++....++.+-. -+.|  +|++.+|+|||...+.||..         .+    
T Consensus       279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keL-ilnEi~Vm~~~~H~NiVnfl~Sylv~---------de----  344 (550)
T KOG0578|consen  279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKEL-LLNEILVMRDLHHPNIVNFLDSYLVG---------DE----  344 (550)
T ss_pred             hhhccccccceeeeeeccCCceEEEEEEEeccCCchhh-hHHHHHHHHhccchHHHHHHHHhccc---------ce----
Confidence            45555555555532    34479999998765533211 1455  68999999999877777522         21    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        |..+|++|+. ++..+|+       +...++..+..+++++|+||.| |.++|+|||||     ..||++... |.+|
T Consensus       345 --LWVVMEym~ggsLTDvVt-------~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIK-----SDnILL~~~-g~vK  409 (550)
T KOG0578|consen  345 --LWVVMEYMEGGSLTDVVT-------KTRMTEGQIAAICREILQGLKFLHARGIIHRDIK-----SDNILLTMD-GSVK  409 (550)
T ss_pred             --eEEEEeecCCCchhhhhh-------cccccHHHHHHHHHHHHHHHHHHHhcceeeeccc-----cceeEeccC-CcEE
Confidence              8899999985 4444443       2347889999999999999999 99999999999     999999865 8899


Q ss_pred             EecCCCCC-CC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSAS-WS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar-~~-~~~~~t~yv~tr~YraP  512 (512)
                      |.|||++. .. ....-++.|||++||||
T Consensus       410 ltDFGFcaqi~~~~~KR~TmVGTPYWMAP  438 (550)
T KOG0578|consen  410 LTDFGFCAQISEEQSKRSTMVGTPYWMAP  438 (550)
T ss_pred             EeeeeeeeccccccCccccccCCCCccch
Confidence            99999976 22 23346789999999998

>KOG0583|consensus

Probab=99.43  E-value=4.2e-14  Score=147.56  Aligned_cols=149  Identities=20%  Similarity=0.243  Sum_probs=114.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC---CCCchHH-HH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP---TTVPSSV-AS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~---~~i~~~~-~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|..+.+..+|.       .+|+|-+.+....   ..+...+ +|  +++.++ ||||+++.+.+           ...
T Consensus        31 gkV~~a~~~~t~~-------~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~-----------~t~   92 (370)
T KOG0583|consen   31 GKVKLAKHRLTGE-------KVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVF-----------ATP   92 (370)
T ss_pred             eeEEEeeeccCCC-------eEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEE-----------ecC
Confidence            6677777777776       8999966554111   1222222 34  678888 99999888777           222


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      ..    ++.+||++.+ ++..||.      ++....+...+.+++|++.|+.| |.++|.|||+|     |+||++....
T Consensus        93 ~~----~~ivmEy~~gGdL~~~i~------~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK-----~ENilld~~~  157 (370)
T KOG0583|consen   93 TK----IYIVMEYCSGGDLFDYIV------NKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLK-----PENILLDGNE  157 (370)
T ss_pred             Ce----EEEEEEecCCccHHHHHH------HcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCC-----HHHEEecCCC
Confidence            22    8899999986 6655553      34557778999999999999999 99999999999     9999998654


Q ss_pred             CeEEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||++...  ....+.+++||++|+||
T Consensus       158 ~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aP  190 (370)
T KOG0583|consen  158 GNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAP  190 (370)
T ss_pred             CCEEEeccccccccCCCCCcccCCCCCcccCCH
Confidence            89999999999854  45678899999999998

>KOG0588|consensus

Probab=99.37  E-value=2.4e-13  Score=144.95  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=122.4

Q ss_pred             CcchhhhccccCCCCCCCcChHhHHHHhhhh-cCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        330 PSSVARIRKDENGIPLSEENFEEAMKAVNFA-LIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       330 ~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~-~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      ++.|.=+.|..||+       ..|||-|.+. -.+...|..+ +|  ||+.+.|||+..+.++.           ++..+
T Consensus        25 tg~vrlakh~~TGq-------laaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVw-----------e~~~~   86 (786)
T KOG0588|consen   25 TGCVRLAKHAETGQ-------LAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVW-----------ENKQH   86 (786)
T ss_pred             Cceehhhhcccccc-------eeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeee-----------ccCce
Confidence            35677788999999       9999998776 2344455553 55  68999999999887765           22222


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                          ++.++++|...     +|.+.+..|..+.+.+...|+.|++.|+.| |.-+|.|||+|     |+|+++... +.+
T Consensus        87 ----lylvlEyv~gG-----ELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLK-----pENlLLd~~-~nI  151 (786)
T KOG0588|consen   87 ----LYLVLEYVPGG-----ELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLK-----PENLLLDVK-NNI  151 (786)
T ss_pred             ----EEEEEEecCCc-----hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCC-----chhhhhhcc-cCE
Confidence                99999999864     356666778888888999999999999999 99999999999     999999865 559


Q ss_pred             EEecCCCCC-CCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSAS-WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar-~~~~~~~t~yv~tr~YraP  512 (512)
                      ||+|||+|. ..+++.+-++||++-|.||
T Consensus       152 KIADFGMAsLe~~gklLeTSCGSPHYA~P  180 (786)
T KOG0588|consen  152 KIADFGMASLEVPGKLLETSCGSPHYAAP  180 (786)
T ss_pred             eeeccceeecccCCccccccCCCcccCCc
Confidence            999999987 5678888999999999998

>KOG0198|consensus

Probab=99.37  E-value=3.9e-13  Score=136.15  Aligned_cols=151  Identities=21%  Similarity=0.159  Sum_probs=109.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      ++|..+.++.+|.       ..|+|.+...-. ..+.+-.+|  ||..++|||||+.....+          ..++   .
T Consensus        31 G~V~l~~~~~~g~-------~~AvK~v~~~~~-~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~----------~~~~---~   89 (313)
T KOG0198|consen   31 GSVYLATNKKTGE-------LMAVKSVELEDS-PTSESLEREIRILSRLNHPNIVQYYGSSS----------SREN---D   89 (313)
T ss_pred             eEEEEEEecCCCc-------ceeeeeeecccc-hhHHHHHHHHHHHHhCCCCCEEeeCCccc----------cccC---e
Confidence            6777777777777       889999876521 111112344  799999999997655421          0111   3


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhcc-CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQA-GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka-~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++..|+++...+     |.+...... ..++..|+.|.+|+|+||.| |+++|+|+|||     |+||++....+.+|+
T Consensus        90 ~~~i~mEy~~~Gs-----L~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK-----~~NiLl~~~~~~~Kl  159 (313)
T KOG0198|consen   90 EYNIFMEYAPGGS-----LSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIK-----PANILLDPSNGDVKL  159 (313)
T ss_pred             eeEeeeeccCCCc-----HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcc-----cceEEEeCCCCeEEe
Confidence            4778899988543     333333322 47899999999999999999 99999999999     999999753489999


Q ss_pred             ecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      +|||++....     ......+.||+.||||
T Consensus       160 aDFG~a~~~~~~~~~~~~~~~~~Gtp~~maP  190 (313)
T KOG0198|consen  160 ADFGLAKKLESKGTKSDSELSVQGTPNYMAP  190 (313)
T ss_pred             ccCccccccccccccccccccccCCccccCc
Confidence            9999987322     2234578999999999

>KOG0599|consensus

Probab=99.37  E-value=1.1e-13  Score=133.91  Aligned_cols=149  Identities=19%  Similarity=0.250  Sum_probs=115.2

Q ss_pred             CCcchhhhccccCCCCCCCcChHhHHHHhhhh---cCCCCCchHHHH-------HHhh-CCCCCCCcCCchhhhhHHhhh
Q psy17422        329 VPSSVARIRKDENGIPLSEENFEEAMKAVNFA---LIPTTVPSSVAS-------ILND-NACVNLTSKSEPFWILAKAVK  397 (512)
Q Consensus       329 ~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~---~~~~~i~~~~~e-------ll~~-~~~~ni~~~~~~fw~l~~alk  397 (512)
                      +.++|.+|.++.+|.       +-|+|.+...   .++.. +.+++|       ||+. +-||+|+.+.+.|        
T Consensus        29 vss~vrRci~k~t~~-------e~a~kii~~~at~~~~e~-~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~y--------   92 (411)
T KOG0599|consen   29 VSSVVRRCIHKETGK-------EFAVKIIDVTATTESGET-PYEMREATRQEISILRQVMGHPYIIDLQDVY--------   92 (411)
T ss_pred             chhhhhhhhhccccc-------ceeEEEEEecccccCCcc-HHHHHHHHHHHHHHHHHhcCCCcEEEeeeec--------
Confidence            457889999999999       7788776432   22223 555544       5655 5699999887766        


Q ss_pred             hhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        398 DFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       398 ~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                         +.+..    ++.+++.|. +.+..|++      ++...++...+.+|+|++.++.| |.++|+|||+|     |+||
T Consensus        93 ---es~sF----~FlVFdl~prGELFDyLt------s~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLK-----pENI  154 (411)
T KOG0599|consen   93 ---ESDAF----VFLVFDLMPRGELFDYLT------SKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLK-----PENI  154 (411)
T ss_pred             ---cCcch----hhhhhhhcccchHHHHhh------hheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccC-----hhhe
Confidence               33333    567777776 55555554      45567778999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCC-CCCCCCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSAS-WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar-~~~~~~~t~yv~tr~YraP  512 (512)
                      +++.+ -.+|+.|||+|. ..++..+...|||+.|.||
T Consensus       155 Llddn-~~i~isDFGFa~~l~~GekLrelCGTPgYLAP  191 (411)
T KOG0599|consen  155 LLDDN-MNIKISDFGFACQLEPGEKLRELCGTPGYLAP  191 (411)
T ss_pred             eeccc-cceEEeccceeeccCCchhHHHhcCCCcccCh
Confidence            99854 789999999987 4567788999999999998

>KOG0667|consensus

Probab=99.36  E-value=1.6e-13  Score=146.67  Aligned_cols=148  Identities=21%  Similarity=0.277  Sum_probs=113.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC-CC-----CCCcCCchhhhhHHhhhhhhhc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA-CV-----NLTSKSEPFWILAKAVKDFVDN  402 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~-----ni~~~~~~fw~l~~alk~F~~~  402 (512)
                      |-|.||-+..|++       .||||-++...  .-......|  ||+.++ |.     |++++.+.|          +-+
T Consensus       200 GQVvk~~d~~T~e-------~VAIKIiKN~k--~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F----------~fr  260 (586)
T KOG0667|consen  200 GQVVKAYDHKTGE-------IVAIKIIKNKK--RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYF----------YFR  260 (586)
T ss_pred             ceeEEEEecCCCc-------EEEEEeeccCh--HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecc----------ccc
Confidence            5688999998888       99999997532  112222333  455554 32     556555555          322


Q ss_pred             CCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC-
Q psy17422        403 EGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES-  480 (512)
Q Consensus       403 ~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~-  480 (512)
                      + +    ++.++|.+..++..|++-.+ |   ...++..++.+.+|+|.+|.. |..+|+|+|+|     |+||++... 
T Consensus       261 ~-H----lciVfELL~~NLYellK~n~-f---~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLK-----PENILL~~~~  326 (586)
T KOG0667|consen  261 N-H----LCIVFELLSTNLYELLKNNK-F---RGLSLPLVRKFAQQILTALLFLHELGIIHCDLK-----PENILLKDPK  326 (586)
T ss_pred             c-c----eeeeehhhhhhHHHHHHhcC-C---CCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCC-----hhheeeccCC
Confidence            2 3    88999999999988886332 2   458899999999999999999 99999999999     999998653 


Q ss_pred             CCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +..+|++|||.|.......+ +|+-+|+||||
T Consensus       327 r~~vKVIDFGSSc~~~q~vy-tYiQSRfYRAP  357 (586)
T KOG0667|consen  327 RSRIKVIDFGSSCFESQRVY-TYIQSRFYRAP  357 (586)
T ss_pred             cCceeEEecccccccCCcce-eeeeccccccc
Confidence            56899999999997766666 89999999999

>KOG0592|consensus

Probab=99.35  E-value=6.6e-13  Score=138.92  Aligned_cols=148  Identities=21%  Similarity=0.200  Sum_probs=116.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHH--HHHHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSV--ASILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~--~ell~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|.++.+++++.       +.|||-+.+.+  ...+++--.  ++.|..+ .||-|+++...|           +++. 
T Consensus        87 StV~~A~~~~t~k-------eYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TF-----------QD~~-  147 (604)
T KOG0592|consen   87 STVVLAREKATGK-------EYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTF-----------QDEE-  147 (604)
T ss_pred             eeEEEeeecCCCc-------eeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEe-----------eccc-
Confidence            7899999999888       88999987654  334444443  3366666 899999888777           2332 


Q ss_pred             CCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         -|+-+|++.. +++-.|++-      ...+|+...+.|..+++.++.| |++||+|||||     |+||+++.+ +.
T Consensus       148 ---sLYFvLe~A~nGdll~~i~K------~Gsfde~caR~YAAeIldAleylH~~GIIHRDlK-----PENILLd~d-mh  212 (604)
T KOG0592|consen  148 ---SLYFVLEYAPNGDLLDLIKK------YGSFDETCARFYAAEILDALEYLHSNGIIHRDLK-----PENILLDKD-GH  212 (604)
T ss_pred             ---ceEEEEEecCCCcHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHhcCceeccCC-----hhheeEcCC-Cc
Confidence               3999999987 677666643      3558999999999999999999 99999999999     999999865 99


Q ss_pred             EEEecCCCCCCC------------C---CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS------------H---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~------------~---~~~~t~yv~tr~YraP  512 (512)
                      +||+|||.|...            +   .+..+++|||-.|.+|
T Consensus       213 ikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSP  256 (604)
T KOG0592|consen  213 IKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSP  256 (604)
T ss_pred             EEEeeccccccCChhhccccCccCcccccCcccceeeeecccCH
Confidence            999999998611            1   1123569999999987

>KOG0582|consensus

Probab=99.33  E-value=3.6e-13  Score=138.04  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=105.1

Q ss_pred             ChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCCh-HHHH
Q psy17422        349 NFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADT-TRYI  425 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~-~~yv  425 (512)
                      |..||||.++.......+..-.+|  .|+.++||||+.....|          +..+ .    |+.+||+|.+.+ ..++
T Consensus        51 ~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sF----------vv~~-~----LWvVmpfMa~GS~ldIi  115 (516)
T KOG0582|consen   51 NEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSF----------VVDS-E----LWVVMPFMAGGSLLDII  115 (516)
T ss_pred             CCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEE----------Eecc-e----eEEeehhhcCCcHHHHH
Confidence            449999998866554544333455  47889999999776666          2221 2    899999998544 3333


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC--CCCC----
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW--SHEN----  498 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~--~~~~----  498 (512)
                        +..|..-  +++..+..+++++|+||.| |.+|-+|||||     +.||++.. +|.+|++|||.+-.  ..+.    
T Consensus       116 --k~~~~~G--l~E~~Ia~iLre~LkaL~YLH~~G~IHRdvK-----AgnILi~~-dG~VkLadFgvsa~l~~~G~R~~~  185 (516)
T KOG0582|consen  116 --KTYYPDG--LEEASIATILREVLKALDYLHQNGHIHRDVK-----AGNILIDS-DGTVKLADFGVSASLFDSGDRQVT  185 (516)
T ss_pred             --HHHcccc--ccHHHHHHHHHHHHHHHHHHHhcCceecccc-----cccEEEcC-CCcEEEcCceeeeeecccCceeeE
Confidence              4555444  8899999999999999999 99999999999     99999975 59999999998531  1111    


Q ss_pred             CccCeeeeeeeccC
Q psy17422        499 EITPYLVSRFYRAP  512 (512)
Q Consensus       499 ~~t~yv~tr~YraP  512 (512)
                      ...++|+|++|+||
T Consensus       186 rf~tfvgtp~wmAP  199 (516)
T KOG0582|consen  186 RFNTFVGTPCWMAP  199 (516)
T ss_pred             eeccccCcccccCh
Confidence            13678999999998

>KOG4236|consensus

Probab=99.32  E-value=7.3e-13  Score=137.67  Aligned_cols=173  Identities=18%  Similarity=0.203  Sum_probs=128.6

Q ss_pred             CCccHHHHHHHhhhhcc-cCCCC-----cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCC
Q psy17422        309 SEENFEEAMKAVNFALI-PTTVP-----SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNAC  379 (512)
Q Consensus       309 ~e~nf~ea~~~~~~~~~-~~~~~-----~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~  379 (512)
                      ++.+..|+...+.+-.+ +.++.     +.|+-..++.+|.       ++|+|-|.+..=+++=.+.+|.   ||+.+.|
T Consensus       550 s~~qiqe~vd~stvYQif~devLGSGQFG~VYgg~hRktGr-------dVAvKvIdKlrFp~kqesqlR~EVaILq~l~H  622 (888)
T KOG4236|consen  550 SNCQIQENVDISTVYQIFADEVLGSGQFGTVYGGKHRKTGR-------DVAVKVIDKLRFPTKQESQLRNEVAILQNLHH  622 (888)
T ss_pred             cchhhhhhhhHHHHHHhhhHhhccCCcceeeecceecccCc-------eeeeeeeecccCCCchHHHHHHHHHHHHhcCC
Confidence            34566666666555332 22333     4588889999999       9999999775433333344554   8999999


Q ss_pred             CCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC
Q psy17422        380 VNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS  458 (512)
Q Consensus       380 ~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~  458 (512)
                      |-||.+.-.|           +.-.    .++.+|+-|..|.-..|-    -.+|.+.....-+.++.|+|.+|.| |..
T Consensus       623 PGiV~le~M~-----------ET~e----rvFVVMEKl~GDMLEMIL----SsEkgRL~er~TkFlvtQIL~ALr~LH~k  683 (888)
T KOG4236|consen  623 PGIVNLECMF-----------ETPE----RVFVVMEKLHGDMLEMIL----SSEKGRLPERITKFLVTQILVALRYLHFK  683 (888)
T ss_pred             CCeeEEEEee-----------cCCc----eEEEEehhhcchHHHHHH----HhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence            9999765545           2211    277889989888644431    2567888888889999999999999 999


Q ss_pred             CCChHHHHhhccccccccccCCC--CeEEEecCCCCCCCCCCC-ccCeeeeeeeccC
Q psy17422        459 AITEAQVKLFCRNASFIHVNESK--LVLKLCDFGSASWSHENE-ITPYLVSRFYRAP  512 (512)
Q Consensus       459 ~I~hrdIK~Fc~n~~nIll~~~~--~~~Kl~DfGlar~~~~~~-~t~yv~tr~YraP  512 (512)
                      +|.|+|+|     |+|+++....  .++|+||||+||...+.. -...|||++|.||
T Consensus       684 nIvHCDLK-----PENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaP  735 (888)
T KOG4236|consen  684 NIVHCDLK-----PENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAP  735 (888)
T ss_pred             ceeeccCC-----chheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCH
Confidence            99999999     9999997543  379999999999765443 4578999999998

>KOG0670|consensus

Probab=99.31  E-value=7.6e-13  Score=137.48  Aligned_cols=158  Identities=35%  Similarity=0.505  Sum_probs=121.9

Q ss_pred             CCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        328 TVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       328 ~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      -+=+.|+++.+.+.|+       ++|||.|..-   ..+... ++|  ||+.++...   -.+.| -+++-+..|..++ 
T Consensus       443 GvFs~Vvra~D~~r~~-------~vAiKIIRnN---E~M~KtGl~EleiLkKL~~AD---~Edk~-Hclrl~r~F~hkn-  507 (752)
T KOG0670|consen  443 GVFSTVVRARDQARGQ-------EVAIKIIRNN---EVMHKTGLKELEILKKLNDAD---PEDKF-HCLRLFRHFKHKN-  507 (752)
T ss_pred             ceeeeeeeccccCCCC-------eeEEEEeecc---hHHhhhhhHHHHHHHHhhccC---chhhh-HHHHHHHHhhhcc-
Confidence            3557899999999999       9999998641   122222 455  676665411   12345 3566667776543 


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      +    |+.+++-+..++-.++   +-|-....+.+..|+.|.+|++-+|.. -..+|+|.|||     |.||+|+..+.+
T Consensus       508 H----LClVFE~LslNLRevL---KKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIK-----PDNiLVNE~k~i  575 (752)
T KOG0670|consen  508 H----LCLVFEPLSLNLREVL---KKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIK-----PDNILVNESKNI  575 (752)
T ss_pred             e----eEEEehhhhchHHHHH---HHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccC-----ccceEeccCcce
Confidence            2    8899988877765554   346566678899999999999999988 77899999999     999999999999


Q ss_pred             EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|+||||.|-...++..|.|+++|+||||
T Consensus       576 LKLCDfGSA~~~~eneitPYLVSRFYRaP  604 (752)
T KOG0670|consen  576 LKLCDFGSASFASENEITPYLVSRFYRAP  604 (752)
T ss_pred             eeeccCccccccccccccHHHHHHhccCc
Confidence            99999999987667779999999999999

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.31  E-value=1.2e-12  Score=131.48  Aligned_cols=149  Identities=20%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.++.       .+|+|.+.............+|  +++.++|+||++..+.|.           .++    
T Consensus        19 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----------~~~----   76 (288)
T cd07871          19 ATVFKGRSKLTEN-------LVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIH-----------TER----   76 (288)
T ss_pred             EEEEEEEECCCCC-------EEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEc-----------CCC----
Confidence            6788888887777       8899887543222221122344  688899999997766551           111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.+++++..++..++.-.     ....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|++
T Consensus        77 ~~~lv~e~~~~~l~~~l~~~-----~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk-----p~Nil~~~-~~~~kl~  145 (288)
T cd07871          77 CLTLVFEYLDSDLKQYLDNC-----GNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLK-----PQNLLINE-KGELKLA  145 (288)
T ss_pred             eEEEEEeCCCcCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEECC-CCCEEEC
Confidence            27789999988776665421     2235778899999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  ........++|.+|+||
T Consensus       146 DfG~~~~~~~~~~~~~~~~~~~~y~aP  172 (288)
T cd07871         146 DFGLARAKSVPTKTYSNEVVTLWYRPP  172 (288)
T ss_pred             cCcceeeccCCCccccCceecccccCh
Confidence            99998732  23334567889999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.30  E-value=1.4e-12  Score=131.78  Aligned_cols=149  Identities=19%  Similarity=0.231  Sum_probs=110.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+.............+|  +++.++||||+...+.|           ....    
T Consensus        19 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-----------~~~~----   76 (303)
T cd07869          19 ATVYKGKSKVNGK-------LVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDII-----------HTKE----   76 (303)
T ss_pred             EEEEEEEECCCCC-------EEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEE-----------ecCC----
Confidence            6778888877777       7899887643322211122344  68889999999766655           1111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      -++.++++|..++..++.-     .....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|++
T Consensus        77 ~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk-----p~Nill~~-~~~~kl~  145 (303)
T cd07869          77 TLTLVFEYVHTDLCQYMDK-----HPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLK-----PQNLLISD-TGELKLA  145 (303)
T ss_pred             eEEEEEECCCcCHHHHHHh-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCCEEEC
Confidence            2788999998877666532     22346788899999999999999 99999999999     99999975 5889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  ........++|++|+||
T Consensus       146 Dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (303)
T cd07869         146 DFGLARAKSVPSHTYSNEVVTLWYRPP  172 (303)
T ss_pred             CCCcceeccCCCccCCCCcccCCCCCh
Confidence            99998732  23344567889999998

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG4250|consensus

Probab=99.30  E-value=2.2e-12  Score=138.81  Aligned_cols=154  Identities=18%  Similarity=0.169  Sum_probs=116.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC---
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN---  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~---  405 (512)
                      +.|++.+++++|.       .+|+|.++............+|  +|+.++|+|||++-+.            +....   
T Consensus        27 g~V~rgrnketG~-------~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~i------------ee~~~~~~   87 (732)
T KOG4250|consen   27 GNVYRGRNKETGR-------LVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDI------------EETKFLGL   87 (732)
T ss_pred             ceeeeeccccccc-------chhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhccc------------CCccccCc
Confidence            7789999999999       9999999876533322223566  7999999999965321            11111   


Q ss_pred             -CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC-
Q psy17422        406 -GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK-  481 (512)
Q Consensus       406 -~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~-  481 (512)
                       +..|+. +|++|.+ ++..+++   -...........+..++..+..|+.+ |.++|+|||||     |.||.+..+. 
T Consensus        88 ~~~~~vl-vmEyC~gGsL~~~L~---~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlK-----P~NIvl~~Ged  158 (732)
T KOG4250|consen   88 VTRLPVL-VMEYCSGGSLRKVLN---SPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLK-----PGNIVLQIGED  158 (732)
T ss_pred             ccccceE-EEeecCCCcHHHHhc---CcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCC-----CCcEEEeecCC
Confidence             345553 5778764 5544432   23345578899999999999999999 99999999999     9999986543 


Q ss_pred             --CeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 --LVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 --~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                        .+-|++|||.||.. .++.+++.|||+-|-+|
T Consensus       159 gq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhP  192 (732)
T KOG4250|consen  159 GQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHP  192 (732)
T ss_pred             CceEEeeecccccccCCCCCeeeeecCchhhcCh
Confidence              46799999999964 46678999999999988

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.29  E-value=9.3e-13  Score=140.95  Aligned_cols=158  Identities=22%  Similarity=0.263  Sum_probs=112.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.+..+|.       .+|+|.+...   ........++|+.++|+||+...+.|+.-.     +..  .....-+
T Consensus        80 g~Vy~~~~~~~~~-------~vAiK~i~~~---~~~~~~Ei~il~~l~h~niv~l~~~~~~~~-----~~~--~~~~~~l  142 (440)
T PTZ00036         80 GVVYEAICIDTSE-------KVAIKKVLQD---PQYKNRELLIMKNLNHINIIFLKDYYYTEC-----FKK--NEKNIFL  142 (440)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEecC---cchHHHHHHHHHhcCCCCCcceeeeEeecc-----ccc--CCCceEE
Confidence            6788888877777       8899977432   111122223788999999998766553110     110  0111236


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecC
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDF  489 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~Df  489 (512)
                      +.+|++|..++..++.-  ..+.....+...++.++.|++.||.| |..+|+|||||     |+||++....+.+|++||
T Consensus       143 ~lvmE~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLK-----p~NILl~~~~~~vkL~DF  215 (440)
T PTZ00036        143 NVVMEFIPQTVHKYMKH--YARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLK-----PQNLLIDPNTHTLKLCDF  215 (440)
T ss_pred             EEEEecCCccHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcC-----HHHEEEcCCCCceeeecc
Confidence            68899998776555432  12233457888999999999999999 99999999999     999999765567999999


Q ss_pred             CCCCCC-CCCCccCeeeeeeeccC
Q psy17422        490 GSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       490 Glar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |+|+.. .......+++|++|+||
T Consensus       216 Gla~~~~~~~~~~~~~~t~~y~aP  239 (440)
T PTZ00036        216 GSAKNLLAGQRSVSYICSRFYRAP  239 (440)
T ss_pred             ccchhccCCCCcccCCCCcCccCH
Confidence            999843 33345578999999998

>KOG0604|consensus

Probab=99.29  E-value=2.4e-12  Score=126.27  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=112.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHH---HhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASI---LNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~el---l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |-|..|.++.+|+       .-|+|-+...      |..-+|+   +.-..|+|||+..++|           ++.-+++
T Consensus        76 GkV~~C~~k~T~e-------kfALKvL~Ds------~KARrEVeLHw~~s~h~~iV~IidVy-----------eNs~~~r  131 (400)
T KOG0604|consen   76 GKVVQCVHKRTQE-------KFALKVLLDS------PKARREVELHWMASGHPHIVSIIDVY-----------ENSYQGR  131 (400)
T ss_pred             CceEEEEeccchh-------hhHHHHHhcC------HHHHhHhhhhhhhcCCCceEEeehhh-----------hhhccCc
Confidence            5688899999999       8899887642      2222332   3334799999887777           2323566


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccC--CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CC
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAG--RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KL  482 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~--~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~  482 (512)
                      ..|-.+|+.|++.     +|...++++..  +.+.++.++|+|+..++.| |+.+|.|||+|     |+||+....  +.
T Consensus       132 kcLLiVmE~meGG-----eLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlK-----pENLLyt~t~~na  201 (400)
T KOG0604|consen  132 KCLLIVMECMEGG-----ELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLK-----PENLLYTTTSPNA  201 (400)
T ss_pred             eeeEeeeecccch-----HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCC-----hhheeeecCCCCc
Confidence            7799999999864     24444555443  7788999999999999999 99999999999     999998643  24


Q ss_pred             eEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+|.... ...+.+-+.|++|.||
T Consensus       202 ~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaP  232 (400)
T KOG0604|consen  202 PLKLTDFGFAKETQEPGDLMTPCFTPYYVAP  232 (400)
T ss_pred             ceEecccccccccCCCccccCCcccccccCH
Confidence            79999999998543 4456778899999998

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.29  E-value=1.5e-12  Score=133.14  Aligned_cols=153  Identities=20%  Similarity=0.199  Sum_probs=110.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+........-... .+|  +++.++||||++..+.+.          .......
T Consensus        14 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~----------~~~~~~~   76 (338)
T cd07859          14 GVVCSAIDTHTGE-------KVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIML----------PPSRREF   76 (338)
T ss_pred             eEEEEEEECCCCC-------EEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEe----------ccCCCCC
Confidence            5678888888887       8899987654332221222 344  688899999997665441          1111111


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .-++.++++|..++..++.      .....+...++.++.|++.|+.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        77 ~~~~lv~e~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-----p~NIll~~-~~~~kL  144 (338)
T cd07859          77 KDIYVVFELMESDLHQVIK------ANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLK-----PKNILANA-DCKLKI  144 (338)
T ss_pred             ceEEEEEecCCCCHHHHHH------hcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEECC-CCcEEE
Confidence            2378899999877655543      23346788899999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...     ......+++|++|+||
T Consensus       145 ~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aP  175 (338)
T cd07859         145 CDFGLARVAFNDTPTAIFWTDYVATRWYRAP  175 (338)
T ss_pred             ccCccccccccccCccccccCCCCCCCcCCH
Confidence            9999987321     1123567899999998

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0192|consensus

Probab=99.28  E-value=2.1e-12  Score=134.17  Aligned_cols=137  Identities=16%  Similarity=0.078  Sum_probs=99.9

Q ss_pred             hHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHh
Q psy17422        352 EAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIAL  427 (512)
Q Consensus       352 eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L  427 (512)
                      +|+|.+.........-.. .+|  +|..++||||+......           ... .  ..+..++++|.. ++..++.-
T Consensus        68 vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~-----------~~~-~--~~~~iVtEy~~~GsL~~~l~~  133 (362)
T KOG0192|consen   68 VAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGAC-----------TSP-P--GSLCIVTEYMPGGSLSVLLHK  133 (362)
T ss_pred             EEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEE-----------cCC-C--CceEEEEEeCCCCcHHHHHhh
Confidence            777777643222111122 234  78889999999633322           111 1  148899999985 44444432


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC-CChHHHHhhccccccccccCCCC-eEEEecCCCCCCCCC--CCccC
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA-ITEAQVKLFCRNASFIHVNESKL-VLKLCDFGSASWSHE--NEITP  502 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~-I~hrdIK~Fc~n~~nIll~~~~~-~~Kl~DfGlar~~~~--~~~t~  502 (512)
                      .    .+...+...+..++.++..|+.| |.++ |+|||+|     ++|+++... . ++|+||||+++....  ..++.
T Consensus       134 ~----~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK-----~~NiLv~~~-~~~~KI~DFGlsr~~~~~~~~~~~  203 (362)
T KOG0192|consen  134 K----RKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLK-----SDNILVDLK-GKTLKIADFGLSREKVISKTSMTS  203 (362)
T ss_pred             c----ccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccC-----hhhEEEcCC-CCEEEECCCccceeeccccccccC
Confidence            1    35678999999999999999999 9999 9999999     999999864 5 999999999985433  45677


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..||..||||
T Consensus       204 ~~GT~~wMAP  213 (362)
T KOG0192|consen  204 VAGTYRWMAP  213 (362)
T ss_pred             CCCCccccCh
Confidence            8999999999

>KOG0611|consensus

Probab=99.27  E-value=3.2e-12  Score=129.45  Aligned_cols=135  Identities=15%  Similarity=0.228  Sum_probs=104.6

Q ss_pred             HhHHHHhhhhcC-CCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALI-PTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~-~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      .+|||.|++..- +..---.+ +|  ||..++||||++...+|           ++.    -.+-.+|+|-. +++..||
T Consensus        80 ~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVF-----------ENk----dKIvivMEYaS~GeLYDYi  144 (668)
T KOG0611|consen   80 EVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVF-----------ENK----DKIVIVMEYASGGELYDYI  144 (668)
T ss_pred             EeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhh-----------cCC----ceEEEEEEecCCccHHHHH
Confidence            899999987432 11111112 33  89999999999888888           221    23678888865 5666666


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC-CCCCCCccCe
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS-WSHENEITPY  503 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar-~~~~~~~t~y  503 (512)
                      .      +.....+.+.+.+++|+..++.| |.+++.|||+|     .+||+++.+ +.+||+|||++. ......+++|
T Consensus       145 S------er~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLK-----LENILLD~N-~NiKIADFGLSNly~~~kfLqTF  212 (668)
T KOG0611|consen  145 S------ERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLK-----LENILLDQN-NNIKIADFGLSNLYADKKFLQTF  212 (668)
T ss_pred             H------HhccccHHHHHHHHHHHHHHHHHHhhccceecccc-----hhheeecCC-CCeeeeccchhhhhccccHHHHh
Confidence            4      44557888999999999999999 99999999999     999999864 889999999987 3456678899


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      ||++-|.+|
T Consensus       213 CGSPLYASP  221 (668)
T KOG0611|consen  213 CGSPLYASP  221 (668)
T ss_pred             cCCcccCCc
Confidence            999999887

>KOG0589|consensus

Probab=99.26  E-value=2.7e-12  Score=133.83  Aligned_cols=149  Identities=17%  Similarity=0.234  Sum_probs=114.8

Q ss_pred             hhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        333 VARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       333 v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      +.=.+|+.-..       ..++|+++..-........ ++|  ++..++||||+...+.|          +++   +++ 
T Consensus        20 a~lvrhk~~~~-------~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~----------~~~---~~~-   78 (426)
T KOG0589|consen   20 ALLVRHKSDDK-------LYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSF----------EED---GQL-   78 (426)
T ss_pred             hhhhhhccCCc-------eEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccch----------hcC---Cce-
Confidence            33444554444       7788988877665555544 555  78889999999888777          232   221 


Q ss_pred             eeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        410 LRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       410 l~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ++.+|.|++ +++...+.-++    ...++++.+..++-|++.++.| |.+.|.|||+|     ++||++.+. +.+|+.
T Consensus        79 l~Ivm~Y~eGg~l~~~i~~~k----~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK-----~~Nifltk~-~~VkLg  148 (426)
T KOG0589|consen   79 LCIVMEYCEGGDLAQLIKEQK----GVLFPEERILKWFVQILLAVNYLHENRVLHRDLK-----CANIFLTKD-KKVKLG  148 (426)
T ss_pred             EEEEEeecCCCCHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHhhhhhcccch-----hhhhhcccc-Cceeec
Confidence            789999998 57766665554    2347888999999999999999 99999999999     999999876 666999


Q ss_pred             cCCCCCCC-C-CCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS-H-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~-~-~~~~t~yv~tr~YraP  512 (512)
                      |||+|+.. + .+...++|||+.|++|
T Consensus       149 DfGlaK~l~~~~~~a~tvvGTp~YmcP  175 (426)
T KOG0589|consen  149 DFGLAKILNPEDSLASTVVGTPYYMCP  175 (426)
T ss_pred             chhhhhhcCCchhhhheecCCCcccCH
Confidence            99999843 3 3367899999999988

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.26  E-value=1.8e-12  Score=132.52  Aligned_cols=148  Identities=17%  Similarity=0.189  Sum_probs=107.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+...  ...+....+|  ++..++||||+.....|           ...+  
T Consensus         9 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~-----------~~~~--   68 (323)
T cd05571           9 GKVILVREKATGK-------YYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSF-----------QTHD--   68 (323)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEE-----------EcCC--
Confidence            5677778877887       788887764321  1111122333  67888999999765555           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        69 --~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlk-----p~NIll~~-~~~~  134 (323)
T cd05571          69 --RLCFVMEYANGGELFFHLS------RERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLK-----LENLMLDK-DGHI  134 (323)
T ss_pred             --EEEEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC-----HHHEEECC-CCCE
Confidence              27889999975 4433332      33346788899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  .......+++|+.|+||
T Consensus       135 kl~DfG~a~~~~~~~~~~~~~~gt~~y~aP  164 (323)
T cd05571         135 KITDFGLCKEGISDGATMKTFCGTPEYLAP  164 (323)
T ss_pred             EEeeCCCCcccccCCCcccceecCccccCh
Confidence            99999998742  23345567899999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.26  E-value=1.8e-12  Score=131.81  Aligned_cols=148  Identities=19%  Similarity=0.243  Sum_probs=107.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+.+...  ...+....+|  ++..++||||+.....|           ...+  
T Consensus         7 g~Vy~~~~~~~~~-------~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~--   66 (312)
T cd05585           7 GKVMQVRKRDTQR-------IYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSF-----------QSPE--   66 (312)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEE-----------ecCC--
Confidence            5678888887777       788887754321  1122222334  67888999999765544           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++      ..+...+...++.++.|++.++.+ |..+|+|||||     |+||++.. ++.+
T Consensus        67 --~~~lv~e~~~~g~L~~~l------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlk-----p~Nili~~-~~~~  132 (312)
T cd05585          67 --KLYLVLAFINGGELFHHL------QREGRFDLSRARFYTAELLCALENLHKFNVIYRDLK-----PENILLDY-QGHI  132 (312)
T ss_pred             --eEEEEEcCCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC-----HHHeEECC-CCcE
Confidence              27889999874 443443      334457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  .......+++|+.|+||
T Consensus       133 kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  162 (312)
T cd05585         133 ALCDFGLCKLNMKDDDKTNTFCGTPEYLAP  162 (312)
T ss_pred             EEEECcccccCccCCCccccccCCcccCCH
Confidence            99999998742  22334567899999998

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0574|consensus

Probab=99.25  E-value=6.6e-13  Score=129.93  Aligned_cols=146  Identities=19%  Similarity=0.204  Sum_probs=112.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      ++|.++.|++.|+       .+|||+|--.   +.+..-++|  ||+..+.+++|++...|         |..  ..   
T Consensus        47 GSV~KAIH~EsG~-------v~AIK~VPV~---sDLQEIIKEISIMQQC~S~yVVKYYGSY---------FK~--sD---  102 (502)
T KOG0574|consen   47 GSVHKAIHRESGH-------VLAIKKVPVD---TDLQEIIKEISIMQQCKSKYVVKYYGSY---------FKH--SD---  102 (502)
T ss_pred             hHHHHHHHhccCc-------EEEEEecCcc---chHHHHHHHHHHHHHcCCchhhhhhhhh---------ccC--Cc---
Confidence            8999999999999       8899997432   233333555  68888889999766554         222  22   


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       |..+|+||.+ +...++++.+     ....+.++..+++..|+||.| |...-+|||||     +.||++++. |+.|+
T Consensus       103 -LWIVMEYCGAGSiSDI~R~R~-----K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIK-----AGNILLNT~-G~AKL  170 (502)
T KOG0574|consen  103 -LWIVMEYCGAGSISDIMRARR-----KPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIK-----AGNILLNTD-GIAKL  170 (502)
T ss_pred             -eEeehhhcCCCcHHHHHHHhc-----CCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-----cccEEEccc-chhhh
Confidence             8999999985 4455555533     236778899999999999999 99999999999     999999865 99999


Q ss_pred             ecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +|||.|-...+  ..-.+.+||++||||
T Consensus       171 ADFGVAGQLTDTMAKRNTVIGTPFWMAP  198 (502)
T KOG0574|consen  171 ADFGVAGQLTDTMAKRNTVIGTPFWMAP  198 (502)
T ss_pred             hhccccchhhhhHHhhCccccCcccccH
Confidence            99999863322  223578999999998

>KOG0577|consensus

Probab=99.25  E-value=1.2e-12  Score=137.77  Aligned_cols=136  Identities=17%  Similarity=0.171  Sum_probs=102.0

Q ss_pred             ChHhHHHHhhhhcCCC--CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHH
Q psy17422        349 NFEEAMKAVNFALIPT--TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRY  424 (512)
Q Consensus       349 n~~eAik~v~~~~~~~--~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~y  424 (512)
                      +..||||++...-...  ++..-++|  .|+.++|||++.+...|          + ++..    -..+|+||-++-..+
T Consensus        51 ~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCy----------L-re~T----aWLVMEYClGSAsDl  115 (948)
T KOG0577|consen   51 SEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCY----------L-REHT----AWLVMEYCLGSASDL  115 (948)
T ss_pred             cceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCccccccee----------e-ccch----HHHHHHHHhccHHHH
Confidence            3488999987553322  22222566  58999999999887766          1 2211    457899998777777


Q ss_pred             HHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCe
Q psy17422        425 IALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPY  503 (512)
Q Consensus       425 v~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~y  503 (512)
                      +...+    | ..-.-.+..+..+.|.||.| |+.+.+|||||     +.||++... |.+|++|||.|...  .+..+|
T Consensus       116 leVhk----K-plqEvEIAAi~~gaL~gLaYLHS~~~IHRDiK-----AGNILLse~-g~VKLaDFGSAsi~--~PAnsF  182 (948)
T KOG0577|consen  116 LEVHK----K-PLQEVEIAAITHGALQGLAYLHSHNRIHRDIK-----AGNILLSEP-GLVKLADFGSASIM--APANSF  182 (948)
T ss_pred             HHHHh----c-cchHHHHHHHHHHHHHHHHHHHHhhHHhhhcc-----ccceEecCC-Ceeeeccccchhhc--Cchhcc
Confidence            76432    1 24445677888999999999 99999999999     999999865 99999999998632  235679


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      |||++||||
T Consensus       183 vGTPywMAP  191 (948)
T KOG0577|consen  183 VGTPYWMAP  191 (948)
T ss_pred             cCCccccch
Confidence            999999998

>KOG0584|consensus

Probab=99.25  E-value=6.6e-12  Score=133.55  Aligned_cols=151  Identities=21%  Similarity=0.241  Sum_probs=112.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhh--hcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNF--ALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~--~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+|+++..+|-       +||-..+..  ..+...--..+ .|  +|+.++|+||++..+ .|+         +..  
T Consensus        54 KtVYka~De~~gi-------EVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~-SW~---------d~~--  114 (632)
T KOG0584|consen   54 KTVYKAFDEEEGI-------EVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYD-SWV---------DTD--  114 (632)
T ss_pred             eeeeeccccccch-------hhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeee-hee---------cCC--
Confidence            5688999999998       888666543  22222211122 23  899999999997543 331         111  


Q ss_pred             CCcceeEEeccccCCh-HHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC--CCCChHHHHhhccccccccccCCC
Q psy17422        406 GNLPLRGSLPDMTADT-TRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS--SAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~-~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~--~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                       ...+..+.+.|++.| ..|.+      +....+...++.+++|||+||.| |.  ..|+|||+|     +.||.++-..
T Consensus       115 -n~~in~iTEL~TSGtLr~Y~k------k~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLK-----CDNIFinG~~  182 (632)
T KOG0584|consen  115 -NKTINFITELFTSGTLREYRK------KHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLK-----CDNIFVNGNL  182 (632)
T ss_pred             -CceeeeeeecccCCcHHHHHH------HhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccc-----cceEEEcCCc
Confidence             123667778898654 33332      22357888999999999999999 65  589999999     9999998778


Q ss_pred             CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |.+||.|.|+|.....+.....+||+-||||
T Consensus       183 G~VKIGDLGLAtl~r~s~aksvIGTPEFMAP  213 (632)
T KOG0584|consen  183 GEVKIGDLGLATLLRKSHAKSVIGTPEFMAP  213 (632)
T ss_pred             CceeecchhHHHHhhccccceeccCccccCh
Confidence            9999999999987777777889999999998

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.24  E-value=6e-12  Score=132.66  Aligned_cols=143  Identities=18%  Similarity=0.127  Sum_probs=107.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.+..++.       .+|+|....    ..+.. -.++++.++||||++..+.|+           ...    -.
T Consensus       106 g~V~~~~d~~~~~-------~vaiK~~~~----~~~~~-E~~il~~l~HpnIv~~~~~~~-----------~~~----~~  158 (391)
T PHA03212        106 GFAFACIDNKTCE-------HVVIKAGQR----GGTAT-EAHILRAINHPSIIQLKGTFT-----------YNK----FT  158 (391)
T ss_pred             eEEEEEEECCCCC-------EEEEechhh----hhhHH-HHHHHHhCCCCCCCCEeEEEE-----------ECC----ee
Confidence            6788888888887       888886542    11211 123789999999998877662           111    16


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecC
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDF  489 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~Df  489 (512)
                      +.+++++..++..++.      .+...+...+..++.|++.+|.| |..+|+|||||     |+||++.. .+.+|++||
T Consensus       159 ~lv~e~~~~~L~~~l~------~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiK-----P~NIll~~-~~~vkL~DF  226 (391)
T PHA03212        159 CLILPRYKTDLYCYLA------AKRNIAICDILAIERSVLRAIQYLHENRIIHRDIK-----AENIFINH-PGDVCLGDF  226 (391)
T ss_pred             EEEEecCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----hHhEEEcC-CCCEEEEeC
Confidence            6788888777655543      23346788899999999999999 99999999999     99999975 488999999


Q ss_pred             CCCCCC---CCCCccCeeeeeeeccC
Q psy17422        490 GSASWS---HENEITPYLVSRFYRAP  512 (512)
Q Consensus       490 Glar~~---~~~~~t~yv~tr~YraP  512 (512)
                      |+|+..   .......+++|++|+||
T Consensus       227 G~a~~~~~~~~~~~~~~~gt~~y~aP  252 (391)
T PHA03212        227 GAACFPVDINANKYYGWAGTIATNAP  252 (391)
T ss_pred             CcccccccccccccccccCccCCCCh
Confidence            998632   22334567899999998

>KOG0585|consensus

Probab=99.24  E-value=2.3e-12  Score=133.00  Aligned_cols=116  Identities=16%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQ  452 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~  452 (512)
                      ||+.+.|+|||++-++.           +.  ..---+++++++|.-.-     ++..-..+...+....+.|++.++.|
T Consensus       161 ilKkl~H~nVV~LiEvL-----------DD--P~s~~~YlVley~s~G~-----v~w~p~d~~els~~~Ar~ylrDvv~G  222 (576)
T KOG0585|consen  161 ILKKLHHPNVVKLIEVL-----------DD--PESDKLYLVLEYCSKGE-----VKWCPPDKPELSEQQARKYLRDVVLG  222 (576)
T ss_pred             HHHhcCCcCeeEEEEee-----------cC--cccCceEEEEEeccCCc-----cccCCCCcccccHHHHHHHHHHHHHH
Confidence            78999999999876554           11  11123889999886322     23333344457788999999999999


Q ss_pred             hCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC-------CCCCccCeeeeeeeccC
Q psy17422        453 LGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS-------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       453 l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~-------~~~~~t~yv~tr~YraP  512 (512)
                      |.| |..+|+|||||     |+||++... |.+||+|||.+...       .+..+..-+||++|+||
T Consensus       223 LEYLH~QgiiHRDIK-----PsNLLl~~~-g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~AP  284 (576)
T KOG0585|consen  223 LEYLHYQGIIHRDIK-----PSNLLLSSD-GTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAP  284 (576)
T ss_pred             HHHHHhcCeeccccc-----hhheEEcCC-CcEEeeccceeeecccCCccccHHHHhhcCCCccccch
Confidence            999 99999999999     999999765 99999999987522       12235568999999998

>KOG0580|consensus

Probab=99.21  E-value=3.5e-12  Score=121.72  Aligned_cols=150  Identities=18%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhh-cCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFA-LIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~-~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+=++.+.++.       .+|+|-+.+. +...+++..++.   |-..++||||.++...||          ++    
T Consensus        36 G~vYlarekks~~-------IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fh----------d~----   94 (281)
T KOG0580|consen   36 GNVYLAREKKSLF-------IVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFH----------DS----   94 (281)
T ss_pred             ccEeEeeeccCCc-------EEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhhee----------cc----
Confidence            5566666676666       9999988764 345566666533   678899999987766663          22    


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       .-++..+++-. ..+  |-.|+.-  ..+.++......|++|+..++.| |..+|+|||||     |+|+++.. .+.+
T Consensus        95 -~riyLilEya~~gel--~k~L~~~--~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiK-----penlLlg~-~~~l  163 (281)
T KOG0580|consen   95 -KRIYLILEYAPRGEL--YKDLQEG--RMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIK-----PENLLLGS-AGEL  163 (281)
T ss_pred             -ceeEEEEEecCCchH--HHHHHhc--ccccccccchhHHHHHHHHHHHHhccCCcccCCCC-----HHHhccCC-CCCe
Confidence             23788888875 333  3334421  22347778888999999999999 99999999999     99999974 5899


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||.+...+.+.-.+.|||.-|.||
T Consensus       164 kiAdfGwsV~~p~~kR~tlcgt~dyl~p  191 (281)
T KOG0580|consen  164 KIADFGWSVHAPSNKRKTLCGTLDYLPP  191 (281)
T ss_pred             eccCCCceeecCCCCceeeecccccCCH
Confidence            9999999987777777789999999988

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.21  E-value=7.1e-12  Score=128.65  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=106.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC--CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP--TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~--~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+....  .......+|  +++.++||||+.....|           ....  
T Consensus         9 g~Vy~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~--   68 (328)
T cd05593           9 GKVILVREKASGK-------YYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSF-----------QTKD--   68 (328)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEE-----------EcCC--
Confidence            5678888888887       7888887653211  111111333  68888999999765554           1111  


Q ss_pred             CcceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|+++... +..++      ..+...+...+..++.|++.++.+ |.++|+|||||     |+||++.. ++.+
T Consensus        69 --~~~lv~Ey~~~g~L~~~l------~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDik-----p~NIll~~-~~~~  134 (328)
T cd05593          69 --RLCFVMEYVNGGELFFHL------SRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLK-----LENLMLDK-DGHI  134 (328)
T ss_pred             --EEEEEEeCCCCCCHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccC-----HHHeEECC-CCcE
Confidence              278899998753 33332      223347788899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  .......+++|..|+||
T Consensus       135 kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  164 (328)
T cd05593         135 KITDFGLCKEGITDAATMKTFCGTPEYLAP  164 (328)
T ss_pred             EEecCcCCccCCCcccccccccCCcCccCh
Confidence            99999998742  22334567899999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.20  E-value=1e-11  Score=128.77  Aligned_cols=152  Identities=25%  Similarity=0.256  Sum_probs=109.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.+.......... .+|  ++..++||||++..+.|- .-..+        ...
T Consensus        35 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-~~~~~--------~~~   98 (359)
T cd07876          35 GIVCAAFDTVLGI-------NVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFT-PQKSL--------EEF   98 (359)
T ss_pred             EEEEEEEEcCCCc-------eeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeec-cCCCc--------ccc
Confidence            6677787777777       8899988654433222222 344  678889999998766541 00000        011


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.++++|..++..++.        ...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|+
T Consensus        99 ~~~~lv~e~~~~~l~~~~~--------~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlk-----p~NIl~~~-~~~~kl  164 (359)
T cd07876          99 QDVYLVMELMDANLCQVIH--------MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLKI  164 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHh--------ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEECC-CCCEEE
Confidence            1267899999877655442        126777888999999999999 99999999999     99999975 589999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.. .....+.+++|+.|+||
T Consensus       165 ~Dfg~a~~~~~~~~~~~~~~t~~y~aP  191 (359)
T cd07876         165 LDFGLARTACTNFMMTPYVVTRYYRAP  191 (359)
T ss_pred             ecCCCccccccCccCCCCcccCCCCCc
Confidence            999999743 23335667899999998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.20  E-value=9.7e-12  Score=128.00  Aligned_cols=151  Identities=23%  Similarity=0.212  Sum_probs=107.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC-CCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE-GNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~-~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++|+||++..+.|.          ... ...
T Consensus        29 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~~~~   91 (343)
T cd07878          29 GSVCSAYDTRLRQ-------KVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFT----------PATSIEN   91 (343)
T ss_pred             eEEEEEEECCCCC-------EEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhc----------ccccccc
Confidence            6677887777776       7888887654322111111 233  688899999997655541          000 011


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.+++.+..++..+++       ....+...++.++.|++.++.| |..+|+|+|||     |+||++.. ++.+|
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdik-----p~Nil~~~-~~~~k  158 (343)
T cd07878          92 FNEVYLVTNLMGADLNNIVK-------CQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLK-----PSNVAVNE-DCELR  158 (343)
T ss_pred             cCcEEEEeecCCCCHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCC-----hhhEEECC-CCCEE
Confidence            12366777877776655543       2247788999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.... ..+.+++|++|+||
T Consensus       159 l~Dfg~~~~~~~-~~~~~~~t~~y~aP  184 (343)
T cd07878         159 ILDFGLARQADD-EMTGYVATRWYRAP  184 (343)
T ss_pred             EcCCccceecCC-CcCCccccccccCc
Confidence            999999885432 24568899999998

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.20  E-value=7.3e-12  Score=129.65  Aligned_cols=152  Identities=23%  Similarity=0.219  Sum_probs=109.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++|+||++..+.|..- ..+        ...
T Consensus        31 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~--------~~~   94 (355)
T cd07874          31 GIVCAAYDAVLDR-------NVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQ-KSL--------EEF   94 (355)
T ss_pred             EEEEEEEecCCCc-------eEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecc-ccc--------ccc
Confidence            5677777777776       7899987654433222222 344  67888999999876655200 000        011


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.++++|..++..++.      .  ..+...+..++.|++.+|.+ |.++|+|||||     |+||++.. .+.+|+
T Consensus        95 ~~~~lv~e~~~~~l~~~~~------~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDik-----p~Nill~~-~~~~kl  160 (355)
T cd07874          95 QDVYLVMELMDANLCQVIQ------M--ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLKI  160 (355)
T ss_pred             ceeEEEhhhhcccHHHHHh------h--cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----hHHEEECC-CCCEEE
Confidence            2367889999877655542      1  26777888999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +|||+++... ......+++|+.|+||
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~t~~y~aP  187 (355)
T cd07874         161 LDFGLARTAGTSFMMTPYVVTRYYRAP  187 (355)
T ss_pred             eeCcccccCCCccccCCccccCCccCH
Confidence            9999998543 2234568899999998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.19  E-value=8.6e-12  Score=126.64  Aligned_cols=155  Identities=16%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++...     ++..+|+|.+...    ..... .+|  +++.++||||++....|          ...   ..
T Consensus        15 g~Vy~~~~~~~~-----~~~~~aiK~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~----------~~~---~~   72 (317)
T cd07868          15 GHVYKAKRKDGK-----DDRDYALKQIEGT----GISMSACREIALLRELKHPNVISLQKVF----------LSH---AD   72 (317)
T ss_pred             eEEEEEEEccCC-----CCceEEEEEECCC----CCcHHHHHHHHHHHhcCCCCCcceeeeE----------ecC---CC
Confidence            566666644211     1236788876432    22222 344  78889999999776555          111   11


Q ss_pred             cceeEEeccccCChHHHHHhHHhhh---hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc---CC
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYR---DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN---ES  480 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~---~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~---~~  480 (512)
                      ..++.+++++..++..++.....-.   .....+...++.++.|++.++.+ |..+|+|||||     |+||++.   ..
T Consensus        73 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlk-----p~Nil~~~~~~~  147 (317)
T cd07868          73 RKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLK-----PANILVMGEGPE  147 (317)
T ss_pred             cEEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCC-----HHHEEEecCCCC
Confidence            2367888998888777765433211   11246788899999999999999 99999999999     9999984   23


Q ss_pred             CCeEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      ++.+|++|||+++...     ......+++|++|+||
T Consensus       148 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aP  184 (317)
T cd07868         148 RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP  184 (317)
T ss_pred             cCcEEEeecCceeccCCCCccccccCCccccccccCC
Confidence            4689999999987321     1234567899999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.19  E-value=5.7e-12  Score=129.01  Aligned_cols=148  Identities=16%  Similarity=0.154  Sum_probs=107.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.....  ...+....+|  +++.++||||+.....|.           .++  
T Consensus         9 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~-----------~~~--   68 (323)
T cd05595           9 GKVILVREKATGR-------YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ-----------THD--   68 (323)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEe-----------cCC--
Confidence            5677788887887       788888764321  1111122233  688889999997766551           111  


Q ss_pred             CcceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|... +..++      ..+...+...++.++.|++.++.+ |.++|+|+|||     |+||++.. ++.+
T Consensus        69 --~~~lv~E~~~~~~L~~~l------~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~  134 (323)
T cd05595          69 --RLCFVMEYANGGELFFHL------SRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK-----LENLMLDK-DGHI  134 (323)
T ss_pred             --EEEEEEeCCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHEEEcC-CCCE
Confidence              378999999854 33332      233357888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  .......+++|..|+||
T Consensus       135 kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  164 (323)
T cd05595         135 KITDFGLCKEGISDGATMKTFCGTPEYLAP  164 (323)
T ss_pred             EecccHHhccccCCCCccccccCCcCcCCc
Confidence            99999998742  22334567899999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG4721|consensus

Probab=99.19  E-value=6.9e-12  Score=131.59  Aligned_cols=147  Identities=14%  Similarity=0.115  Sum_probs=108.1

Q ss_pred             hhhhccccCCCCC--CCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc-
Q psy17422        333 VARIRKDENGIPL--SEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP-  409 (512)
Q Consensus       333 v~~~~~~~~~~~~--~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP-  409 (512)
                      ++++.-.+-|++.  ..+|..||+|+|+.... +.    ++- |+.++|+||+....+.                ..-| 
T Consensus       129 LeWlGSGaQGAVF~Grl~netVAVKKV~elkE-Td----IKH-LRkLkH~NII~FkGVC----------------tqsPc  186 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRLHNETVAVKKVRELKE-TD----IKH-LRKLKHPNIITFKGVC----------------TQSPC  186 (904)
T ss_pred             hhhhccCcccceeeeeccCceehhHHHhhhhh-hh----HHH-HHhccCcceeeEeeee----------------cCCce
Confidence            3444444444433  25688999999976421 22    222 7889999999544433                1223 


Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      .+.+|++|...     .|+.+.+.........+..+..+|..|++| |.+.|+|||+|     .-||++.. ...+||+|
T Consensus       187 yCIiMEfCa~G-----qL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLK-----SPNiLIs~-~d~VKIsD  255 (904)
T KOG4721|consen  187 YCIIMEFCAQG-----QLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLK-----SPNILISY-DDVVKISD  255 (904)
T ss_pred             eEEeeeccccc-----cHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccC-----CCceEeec-cceEEecc
Confidence            46778887633     466777666667788888999999999999 99999999999     99999975 48999999


Q ss_pred             CCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        489 FGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ||.++.. ..+..-.|+||-+||||
T Consensus       256 FGTS~e~~~~STkMSFaGTVaWMAP  280 (904)
T KOG4721|consen  256 FGTSKELSDKSTKMSFAGTVAWMAP  280 (904)
T ss_pred             ccchHhhhhhhhhhhhhhhHhhhCH
Confidence            9999843 34566689999999998

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.19  E-value=7.7e-12  Score=127.64  Aligned_cols=149  Identities=17%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HH---HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VA---SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~---ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+..+|.       .+|+|.+.+... ....... .+   .+++.++|+||+.....|.           ..+ 
T Consensus         9 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~-----------~~~-   69 (321)
T cd05603           9 GKVLLAKRKSDGS-------FYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQ-----------TAE-   69 (321)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEE-----------cCC-
Confidence            5677788877777       778887653211 1111111 22   2577889999997765551           111 


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         .++.++++|...+     |....+.+.......+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        70 ---~~~lv~e~~~~~~-----L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlk-----p~NIll~~-~~~~  135 (321)
T cd05603          70 ---KLYFVLDYVNGGE-----LFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLK-----PENILLDS-QGHV  135 (321)
T ss_pred             ---EEEEEEcCCCCCC-----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC-----HHHeEECC-CCCE
Confidence               2788999998543     22222333446778888999999999999 99999999999     99999975 5899


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  +......+++|+.|+||
T Consensus       136 kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (321)
T cd05603         136 VLTDFGLCKEGVEPEETTSTFCGTPEYLAP  165 (321)
T ss_pred             EEccCCCCccCCCCCCccccccCCcccCCH
Confidence            99999998742  23334567899999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.18  E-value=9.4e-12  Score=129.84  Aligned_cols=153  Identities=22%  Similarity=0.217  Sum_probs=109.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC-CchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...+.... .....+|  ++..++|+||+...+.|.          ..+....
T Consensus        14 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~----------~~~~~~~   76 (372)
T cd07853          14 GVVWSVTDPRDGK-------RVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQ----------PPHIDPF   76 (372)
T ss_pred             EEEEEEEECCCCC-------EEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheec----------CCCcccc
Confidence            6677787777777       789998765433211 1112344  678889999997655441          1110111


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .-++.+++++..++..++      ......+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        77 ~~~~lv~e~~~~~l~~~~------~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk-----p~Nili~~-~~~~kL  144 (372)
T cd07853          77 EEIYVVTELMQSDLHKII------VSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIK-----PGNLLVNS-NCVLKI  144 (372)
T ss_pred             ceEEEEeeccccCHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----hHHEEECC-CCCEEe
Confidence            136788898887655444      233457888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC---CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS---HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~---~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..   .....+.+++|++|+||
T Consensus       145 ~Dfg~a~~~~~~~~~~~~~~~~~~~y~aP  173 (372)
T cd07853         145 CDFGLARVEEPDESKHMTQEVVTQYYRAP  173 (372)
T ss_pred             ccccceeecccCccccCCCCCcCCCcCCH
Confidence            999998732   22335667899999998

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.18  E-value=1.3e-11  Score=128.33  Aligned_cols=152  Identities=22%  Similarity=0.210  Sum_probs=109.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++|+||+.....|..    -..+     ...
T Consensus        38 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~----~~~~-----~~~  101 (364)
T cd07875          38 GIVCAAYDAILER-------NVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTP----QKSL-----EEF  101 (364)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecc----cccc-----ccc
Confidence            5677777777776       7899988765433322222 344  6888999999977655510    0000     011


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.+++++..++..++.      .  ..+...+..++.|++.++.+ |.++|+|+|||     |+||++.. .+.+|+
T Consensus       102 ~~~~lv~e~~~~~l~~~~~------~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~kL  167 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQ------M--ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLKI  167 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHH------h--cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCC-----HHHEEECC-CCcEEE
Confidence            2378999999887665552      1  26677888999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCCC-CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE-NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~-~~~t~yv~tr~YraP  512 (512)
                      +|||+++.... ...+.+++|+.|+||
T Consensus       168 ~DfG~a~~~~~~~~~~~~~~t~~y~aP  194 (364)
T cd07875         168 LDFGLARTAGTSFMMTPYVVTRYYRAP  194 (364)
T ss_pred             EeCCCccccCCCCcccCCcccCCcCCH
Confidence            99999985432 234567899999998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.18  E-value=8.9e-12  Score=129.65  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=94.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHH--HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSV--ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~--~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+.+...  ......-.  .+++..++|+||+.....|           ...   
T Consensus        15 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~-----------~~~---   73 (363)
T cd05628          15 GEVRLVQKKDTGH-------VYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSF-----------QDK---   73 (363)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEE-----------ecC---
Confidence            5677777777777       788887754321  11111111  2368888999999766555           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       ..++.+|++|.. ++..++      ..+...+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        74 -~~~~lv~E~~~gg~L~~~l------~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlK-----p~NILi~~-~~~v  140 (363)
T cd05628          74 -LNLYLIMEFLPGGDMMTLL------MKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIK-----PDNLLLDS-KGHV  140 (363)
T ss_pred             -CeEEEEEcCCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCC-----HHHeEECC-CCCE
Confidence             137899999975 544444      334457888999999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 kL~DFGla~  149 (363)
T cd05628         141 KLSDFGLCT  149 (363)
T ss_pred             EEeeccCcc
Confidence            999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.18  E-value=6.7e-12  Score=128.43  Aligned_cols=148  Identities=18%  Similarity=0.115  Sum_probs=104.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCC---CchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTT---VPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~---i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+..++.       .+|+|.+.+...  ...   +..+...+++.++|+||+.....|           ...+ 
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~-----------~~~~-   69 (325)
T cd05602           9 GKVLLARHKAEEK-------FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF-----------QTAD-   69 (325)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEE-----------EcCC-
Confidence            5677777777776       778887653211  111   111112256778999999766555           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.++++|.. ++..++      ..........++.++.|++.++.+ |..+|+|||||     |+||++.. .+.
T Consensus        70 ---~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlk-----p~Nili~~-~~~  134 (325)
T cd05602          70 ---KLYFVLDYINGGELFYHL------QRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLK-----PENILLDS-QGH  134 (325)
T ss_pred             ---eEEEEEeCCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHeEECC-CCC
Confidence               27889999985 443433      233346677888899999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aP  165 (325)
T cd05602         135 IVLTDFGLCKENIEHNGTTSTFCGTPEYLAP  165 (325)
T ss_pred             EEEccCCCCcccccCCCCcccccCCccccCH
Confidence            999999998732  23334567899999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.17  E-value=1e-11  Score=126.92  Aligned_cols=148  Identities=18%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CC-CCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PT-TVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~-~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+..... .. ......++   +++.++||||+.....|           .... 
T Consensus         9 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~-----------~~~~-   69 (323)
T cd05575           9 GKVLLAKHKADGK-------FYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSF-----------QTAD-   69 (323)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEE-----------EeCC-
Confidence            5678888888887       888888754321 11 11111222   56778999999765554           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..++      +.+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.
T Consensus        70 ---~~~lv~e~~~~g~L~~~l------~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dik-----p~NIll~~-~~~  134 (323)
T cd05575          70 ---KLYFVLDYVNGGELFFHL------QRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLK-----PENILLDS-QGH  134 (323)
T ss_pred             ---EEEEEEcCCCCCCHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC-----HHHeEECC-CCc
Confidence               27889999975 443443      233346778888999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  ........++|..|+||
T Consensus       135 ~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (323)
T cd05575         135 VVLTDFGLCKEGIEHSKTTSTFCGTPEYLAP  165 (323)
T ss_pred             EEEeccCCCcccccCCCccccccCChhhcCh
Confidence            999999998742  23334567899999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.17  E-value=1.3e-11  Score=126.34  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=105.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC--CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP--TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~--~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+......  ..+....+|  ++..++|+||+.....|           ...   
T Consensus         9 g~V~~~~~~~~~~-------~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~-----------~~~---   67 (325)
T cd05594           9 GKVILVKEKATGR-------YYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSF-----------QTH---   67 (325)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEE-----------EcC---
Confidence            5677777777777       7888877643211  111112233  67888999999765555           111   


Q ss_pred             CcceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCe
Q psy17422        407 NLPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       407 ~lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                       -.++.+|+++... +..++      ..+...+...+..++.|++.++.| |. .+|+|||||     |+||++.. ++.
T Consensus        68 -~~~~lv~E~~~~~~L~~~l------~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDik-----p~NIll~~-~~~  134 (325)
T cd05594          68 -DRLCFVMEYANGGELFFHL------SRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLK-----LENLMLDK-DGH  134 (325)
T ss_pred             -CEEEEEEeCCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCC-----CCeEEECC-CCC
Confidence             1378999999754 33332      233346788899999999999999 97 799999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (325)
T cd05594         135 IKITDFGLCKEGIKDGATMKTFCGTPEYLAP  165 (325)
T ss_pred             EEEecCCCCeecCCCCcccccccCCcccCCH
Confidence            999999998732  23334567899999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.16  E-value=2e-11  Score=121.93  Aligned_cols=149  Identities=21%  Similarity=0.291  Sum_probs=108.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.++.       .+|+|.+............ .+|  +++.++|+||++..+.|           ..++   
T Consensus        15 ~~v~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~---   73 (287)
T cd07848          15 GVVLKCRHKETKE-------IVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAF-----------RRRG---   73 (287)
T ss_pred             EEEEEEEECCCCc-------EEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhE-----------ecCC---
Confidence            5678888887777       7888887643322222222 344  68888999999765544           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++|++..++...+.     +.....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|+
T Consensus        74 -~~~lv~e~~~~~~l~~~~-----~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk-----p~Nill~~-~~~~kl  141 (287)
T cd07848          74 -KLYLVFEYVEKNMLELLE-----EMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIK-----PENLLISH-NDVLKL  141 (287)
T ss_pred             -EEEEEEecCCCCHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEEcC-CCcEEE
Confidence             378999999876544332     122347788899999999999999 99999999999     99999964 588999


Q ss_pred             ecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...   ......+++|++|+||
T Consensus       142 ~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  170 (287)
T cd07848         142 CDFGFARNLSEGSNANYTEYVATRWYRSP  170 (287)
T ss_pred             eeccCcccccccccccccccccccccCCc
Confidence            9999987432   2234567899999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.16  E-value=1.2e-11  Score=126.44  Aligned_cols=148  Identities=17%  Similarity=0.125  Sum_probs=105.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+... ....... .+|   +++.++||||++....|           ...+ 
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~-----------~~~~-   69 (325)
T cd05604           9 GKVLLAKRKLDGK-------CYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSF-----------QTTE-   69 (325)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEE-----------ecCC-
Confidence            5677777877787       788887654321 1111111 222   57778999999765554           1111 


Q ss_pred             CCcceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++... +..+      .......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.
T Consensus        70 ---~~~lv~e~~~~~~L~~~------l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlk-----p~NIll~~-~~~  134 (325)
T cd05604          70 ---KLYFVLDFVNGGELFFH------LQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLK-----PENILLDS-QGH  134 (325)
T ss_pred             ---EEEEEEcCCCCCCHHHH------HHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----HHHeEECC-CCC
Confidence               278899998754 3323      2333457888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  165 (325)
T cd05604         135 VVLTDFGLCKEGIAQSDTTTTFCGTPEYLAP  165 (325)
T ss_pred             EEEeecCCcccCCCCCCCcccccCChhhCCH
Confidence            999999998732  22334567899999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0032|consensus

Probab=99.16  E-value=1.4e-11  Score=128.90  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=114.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCC--chHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTV--PSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i--~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|.+|.++.+|.       ..|+|.+.+.......  ..-.+|  ||+.+. ||||+.+.+.|           +... 
T Consensus        49 g~v~~~~~~~tg~-------~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~-----------e~~~-  109 (382)
T KOG0032|consen   49 GVVYLCREKSTGK-------EVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAF-----------EDPD-  109 (382)
T ss_pred             eEEEEEEecCCCc-------eeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEE-----------EcCC-
Confidence            7899999999998       9999999776543332  122344  789988 99999888877           3322 


Q ss_pred             CCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC--
Q psy17422        406 GNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK--  481 (512)
Q Consensus       406 ~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~--  481 (512)
                         -++.+|+.+. +++...+.-.       ...+.....++.|++.++.| |..+|+|||+|     |+|+++....  
T Consensus       110 ---~~~lvmEL~~GGeLfd~i~~~-------~~sE~da~~~~~~il~av~~lH~~gvvHrDlK-----pEN~L~~~~~~~  174 (382)
T KOG0032|consen  110 ---SVYLVMELCEGGELFDRIVKK-------HYSERDAAGIIRQILEAVKYLHSLGVVHRDLK-----PENLLLASKDEG  174 (382)
T ss_pred             ---eEEEEEEecCCchHHHHHHHc-------cCCHHHHHHHHHHHHHHHHHHHhCCceeccCC-----HHHeeeccccCC
Confidence               2889999987 4544433211       25667888899999999999 99999999999     9999986543  


Q ss_pred             -CeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 -LVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 -~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                       +.+|++|||++... ++..+...|||+.|+||
T Consensus       175 ~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~AP  207 (382)
T KOG0032|consen  175 SGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAP  207 (382)
T ss_pred             CCcEEEeeCCCceEccCCceEeeecCCccccCc
Confidence             47999999999843 35567889999999998

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.16  E-value=1.5e-11  Score=126.23  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=106.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC--CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP--TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~--~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+......  .....-.+|  ++..++|+||++....|           ....  
T Consensus        15 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~-----------~~~~--   74 (333)
T cd05600          15 GQVFLAKKKDTGE-------IVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAF-----------QDDE--   74 (333)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEE-----------EcCC--
Confidence            6678888887777       7888877543211  111111233  67888899999765544           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.++++|.. ++..++      ......+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        75 --~~~lv~e~~~g~~L~~~l------~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~  140 (333)
T cd05600          75 --YLYLAMEYVPGGDFRTLL------NNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLK-----PENFLIDA-SGHI  140 (333)
T ss_pred             --EEEEEEeCCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEECC-CCCE
Confidence              27899999974 554444      333446778899999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.... .....++|..|+||
T Consensus       141 kL~Dfg~a~~~~~-~~~~~~gt~~y~aP  167 (333)
T cd05600         141 KLTDFGLSKGIVT-YANSVVGSPDYMAP  167 (333)
T ss_pred             EEEeCcCCccccc-ccCCcccCccccCh
Confidence            9999999874332 23457899999998

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.15  E-value=2.1e-11  Score=123.61  Aligned_cols=149  Identities=18%  Similarity=0.193  Sum_probs=107.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.++.       .+|+|.+.............+|  +++.++|+||+...+.++           .++    
T Consensus        20 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~----   77 (309)
T cd07872          20 ATVFKGRSKLTEN-------LVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVH-----------TDK----   77 (309)
T ss_pred             EEEEEEEecCCCC-------eEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEe-----------eCC----
Confidence            5677777666666       7899987644322222222344  688899999997766552           111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.+++++..++..++.-     .+...+...++.++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++
T Consensus        78 ~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlk-----p~Nill~~-~~~~kl~  146 (309)
T cd07872          78 SLTLVFEYLDKDLKQYMDD-----CGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLK-----PQNLLINE-RGELKLA  146 (309)
T ss_pred             eEEEEEeCCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCCEEEC
Confidence            2778999998776665532     12336778889999999999999 99999999999     99999975 5889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  +.......++|.+|+||
T Consensus       147 Dfg~~~~~~~~~~~~~~~~~~~~y~aP  173 (309)
T cd07872         147 DFGLARAKSVPTKTYSNEVVTLWYRPP  173 (309)
T ss_pred             ccccceecCCCccccccccccccccCC
Confidence            99998732  22334456789999998

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.15  E-value=1.3e-11  Score=129.17  Aligned_cols=129  Identities=16%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHH--HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSV--ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~--~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+.+...  ...+..-.  .++++.++|+||+.....|           ...   
T Consensus        15 g~Vy~a~~~~~~~-------~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~-----------~~~---   73 (382)
T cd05625          15 GEVCLARKVDTKA-------LYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSF-----------QDK---   73 (382)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEE-----------EeC---
Confidence            6677888877777       788887754211  01111111  2278889999999876665           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.+|++|.. ++..++.      .....+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        74 -~~~~lv~E~~~gg~L~~~l~------~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlK-----p~NILl~~-~g~~  140 (382)
T cd05625          74 -DNLYFVMDYIPGGDMMSLLI------RMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIK-----PDNILIDR-DGHI  140 (382)
T ss_pred             -CEEEEEEeCCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEECC-CCCE
Confidence             138899999975 5544442      23346778899999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 kL~DFGla~  149 (382)
T cd05625         141 KLTDFGLCT  149 (382)
T ss_pred             EEeECCCCc
Confidence            999999974

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.15  E-value=1.6e-11  Score=125.32  Aligned_cols=148  Identities=17%  Similarity=0.124  Sum_probs=104.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHh-hCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILN-DNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~-~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.....  .........+  ++. ..+||||+.....|           ...+ 
T Consensus         9 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~-----------~~~~-   69 (316)
T cd05592           9 GKVMLAELKGTNE-------FFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTF-----------QTKE-   69 (316)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEE-----------EcCC-
Confidence            5677777777776       788887754321  1222222222  333 35799999766554           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..++      +.+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. .+.
T Consensus        70 ---~~~lv~e~~~gg~L~~~~------~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlk-----p~Nill~~-~~~  134 (316)
T cd05592          70 ---HLFFVMEYLNGGDLMFHI------QSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLK-----LDNVLLDK-DGH  134 (316)
T ss_pred             ---EEEEEEcCCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCC-----HHHeEECC-CCC
Confidence               27899999975 433333      334457888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  ........++|..|+||
T Consensus       135 ~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP  165 (316)
T cd05592         135 IKIADFGMCKENMNGEGKASTFCGTPDYIAP  165 (316)
T ss_pred             EEEccCcCCeECCCCCCccccccCCccccCH
Confidence            999999998732  22334567899999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.14  E-value=1.5e-11  Score=127.67  Aligned_cols=129  Identities=15%  Similarity=0.133  Sum_probs=94.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-H--HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-V--ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~--~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+..... ....... .  .+++..++|+||+.....|          . ...  
T Consensus        15 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~----------~-~~~--   74 (364)
T cd05599          15 GEVRLVQKKDTGH-------IYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSF----------Q-DEN--   74 (364)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEE----------E-cCC--
Confidence            5678888888887       889998764321 1111111 1  2378889999999766555          1 111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++      ..+...+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        75 --~~~lv~E~~~~g~L~~~l------~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlk-----p~NIl~~~-~~~~  140 (364)
T cd05599          75 --YLYLIMEYLPGGDMMTLL------MKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIK-----PDNLLLDA-KGHI  140 (364)
T ss_pred             --eEEEEECCCCCcHHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC-----HHHeEECC-CCCE
Confidence              27889999974 444443      333457888999999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||++.
T Consensus       141 kl~Dfg~~~  149 (364)
T cd05599         141 KLSDFGLCT  149 (364)
T ss_pred             EEeecccce
Confidence            999999975

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.14  E-value=1.7e-11  Score=127.94  Aligned_cols=129  Identities=17%  Similarity=0.156  Sum_probs=93.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHH--HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVA--SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~--ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....  .......-.+  +++..++|+||+.....|           ...+  
T Consensus        15 g~V~~a~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~-----------~~~~--   74 (376)
T cd05598          15 GEVCLVRKVDTNA-------LYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSF-----------QDKD--   74 (376)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEE-----------EcCC--
Confidence            6678888887777       78888765321  1111111122  378889999999765555           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|+++. .++..++.      .....+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        75 --~~~lv~E~~~~g~L~~~i~------~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlk-----p~Nill~~-~~~i  140 (376)
T cd05598          75 --NLYFVMDYIPGGDMMSLLI------RLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIK-----PDNILIDR-DGHI  140 (376)
T ss_pred             --EEEEEEeCCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC-----HHHEEECC-CCCE
Confidence              3788999997 46655553      23346777888999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+|.
T Consensus       141 kL~DFG~a~  149 (376)
T cd05598         141 KLTDFGLCT  149 (376)
T ss_pred             EEEeCCCCc
Confidence            999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.13  E-value=1.5e-11  Score=126.22  Aligned_cols=147  Identities=17%  Similarity=0.108  Sum_probs=105.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CC-CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IP-TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~-~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+.. .. .....-.+|  +++.++||||++....|          . .++  
T Consensus        32 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~----------~-~~~--   91 (329)
T PTZ00263         32 GRVRIAKHKGTGE-------YYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSF----------Q-DEN--   91 (329)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEE----------E-cCC--
Confidence            5677888877777       78888775431 11 111111233  68889999999766555          1 111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.      .+.......++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        92 --~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk-----p~NIll~~-~~~~  157 (329)
T PTZ00263         92 --RVYFLLEFVVGGELFTHLR------KAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLK-----PENLLLDN-KGHV  157 (329)
T ss_pred             --EEEEEEcCCCCChHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----HHHEEECC-CCCE
Confidence              27889999874 5444443      33446777888999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++...... ..+++|..|+||
T Consensus       158 kl~Dfg~~~~~~~~~-~~~~gt~~y~aP  184 (329)
T PTZ00263        158 KVTDFGFAKKVPDRT-FTLCGTPEYLAP  184 (329)
T ss_pred             EEeeccCceEcCCCc-ceecCChhhcCH
Confidence            999999987543332 346789999998

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.13  E-value=2e-11  Score=125.23  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--CCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--TVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+.....  .+..-.+|  ++..+ +||||+.....|           ...+ 
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~-----------~~~~-   69 (329)
T cd05588           9 AKVLLVELKKTRR-------IYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCF-----------QTES-   69 (329)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEE-----------EcCC-
Confidence            5677788887777       78888876543211  11111222  55555 799999776655           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.++++|.. ++..++      ..+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.
T Consensus        70 ---~~~lv~e~~~~g~L~~~~------~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~Nili~~-~~~  134 (329)
T cd05588          70 ---RLFFVIEFVSGGDLMFHM------QRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLK-----LDNVLLDA-EGH  134 (329)
T ss_pred             ---EEEEEEeCCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHeEECC-CCC
Confidence               27899999975 443333      233457888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.  ........+++|..|+||
T Consensus       135 ~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (329)
T cd05588         135 IKLTDYGMCKEGIRPGDTTSTFCGTPNYIAP  165 (329)
T ss_pred             EEECcCccccccccCCCccccccCCccccCH
Confidence            99999999873  223344567899999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.13  E-value=4.4e-11  Score=119.39  Aligned_cols=155  Identities=23%  Similarity=0.283  Sum_probs=108.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HH---hhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--IL---NDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll---~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.++.+|.       .+|+|.+.........+.. .+|  ++   ...+|+||++..+.|.          ....
T Consensus        14 g~v~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~----------~~~~   76 (288)
T cd07863          14 GTVYKARDPHSGH-------FVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCA----------TSRT   76 (288)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeec----------cccC
Confidence            6778888888887       8899987654333333322 233  33   4457999997766541          1111


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      .....+..+++++..++..++.-.    .....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.
T Consensus        77 ~~~~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dik-----p~Nili~~-~~~  146 (288)
T cd07863          77 DRETKVTLVFEHVDQDLRTYLDKV----PPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLK-----PENILVTS-GGQ  146 (288)
T ss_pred             CCCceEEEEEcccccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEECC-CCC
Confidence            112236788888887766665321    11236788999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++... ....+..++|..|+||
T Consensus       147 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aP  176 (288)
T cd07863         147 VKLADFGLARIYSCQMALTPVVVTLWYRAP  176 (288)
T ss_pred             EEECccCccccccCcccCCCccccccccCc
Confidence            9999999987432 2234567889999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.12  E-value=2.4e-11  Score=124.52  Aligned_cols=148  Identities=18%  Similarity=0.166  Sum_probs=103.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhh-C--CCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILND-N--ACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~-~--~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  ....+...+.+  ++.. .  .||||+.....|           ...
T Consensus         7 g~Vy~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~-----------~~~   68 (330)
T cd05586           7 GQVYQVRKKDTRR-------IYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSF-----------QTD   68 (330)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEE-----------ecC
Confidence            5677788887777       78888764321  11112222222  3333 2  699998766555           111


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                          -.++.+++++.. ++..+      .+.+...+...+..++.|++.++.| |.++|+|||||     |+||++.. +
T Consensus        69 ----~~~~lv~e~~~~g~L~~~------l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlk-----p~Nili~~-~  132 (330)
T cd05586          69 ----SDLYLVTDYMSGGELFWH------LQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLK-----PENILLDA-T  132 (330)
T ss_pred             ----CeEEEEEcCCCCChHHHH------HHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC-----HHHeEECC-C
Confidence                127888999875 43333      3344557888999999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++..  .......+++|..|+||
T Consensus       133 ~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aP  165 (330)
T cd05586         133 GHIALCDFGLSKANLTDNKTTNTFCGTTEYLAP  165 (330)
T ss_pred             CCEEEecCCcCcCCCCCCCCccCccCCccccCH
Confidence            88999999998742  22334567899999998

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0616|consensus

Probab=99.12  E-value=1.7e-11  Score=120.19  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=109.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCch--HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPS--SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~--~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |+|-=++++.+|.       --|+|.+.+.-  .-.++..  +.+.+|+...||.++.+-..|           ...++ 
T Consensus        58 GrV~LVr~k~~g~-------yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~-----------~d~~~-  118 (355)
T KOG0616|consen   58 GRVHLVREKHSGN-------YYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTF-----------KDNSN-  118 (355)
T ss_pred             ceEEEEEEccCCc-------eeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEee-----------ccCCe-
Confidence            6677777888887       55666654321  0001111  123378888999999776666           11122 


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         ++++||+.. +.+.+|++      +..+++....+.|..|++.++.| |+.+|+.||+|     |+||++++ +|.+
T Consensus       119 ---lymvmeyv~GGElFS~Lr------k~~rF~e~~arFYAAeivlAleylH~~~iiYRDLK-----PENiLlD~-~G~i  183 (355)
T KOG0616|consen  119 ---LYMVMEYVPGGELFSYLR------KSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLK-----PENLLLDQ-NGHI  183 (355)
T ss_pred             ---EEEEEeccCCccHHHHHH------hcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCC-----hHHeeecc-CCcE
Confidence               899999987 45555553      33457888999999999999999 99999999999     99999986 4999


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |+.|||+|....++.+ +-|||+-|.||
T Consensus       184 KitDFGFAK~v~~rT~-TlCGTPeYLAP  210 (355)
T KOG0616|consen  184 KITDFGFAKRVSGRTW-TLCGTPEYLAP  210 (355)
T ss_pred             EEEeccceEEecCcEE-EecCCccccCh
Confidence            9999999987666644 46999999998

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.12  E-value=2.1e-11  Score=127.46  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=93.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchH--HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSS--VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~--~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  ....+..-  ..+++..++||||++..+.|           ....  
T Consensus        15 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~-----------~~~~--   74 (377)
T cd05629          15 GEVRLVQKKDTGK-------IYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSF-----------QDAQ--   74 (377)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEE-----------EcCC--
Confidence            5677777777777       78888765421  11111111  12378889999999776655           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.++|++. .++..++.      .....+...++.++.|++.+|.+ |..+|+|||||     |+||++.. .+.+
T Consensus        75 --~~~lv~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlk-----p~NIll~~-~~~~  140 (377)
T cd05629          75 --YLYLIMEFLPGGDLMTMLI------KYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIK-----PDNILIDR-GGHI  140 (377)
T ss_pred             --eeEEEEeCCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----HHHEEECC-CCCE
Confidence              2789999996 45555543      22346778899999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 kl~DfGla~  149 (377)
T cd05629         141 KLSDFGLST  149 (377)
T ss_pred             EEeeccccc
Confidence            999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.12  E-value=2.5e-11  Score=123.88  Aligned_cols=148  Identities=19%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHh-hCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILN-DNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~-~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.....  .........|  ++. ..+|+||+.....|           ...+ 
T Consensus         9 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----------~~~~-   69 (316)
T cd05620           9 GKVLLAELKGKGE-------YFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTF-----------QTKE-   69 (316)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEE-----------EeCC-
Confidence            5677788887887       788888765321  1112122222  344 34799998766555           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|+++.. ++..++      ..+...+...+..++.|++.++.+ |.++|+|||||     |+||++.. ++.
T Consensus        70 ---~~~lv~E~~~~g~L~~~i------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlk-----p~Nil~~~-~~~  134 (316)
T cd05620          70 ---HLFFVMEFLNGGDLMFHI------QDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLK-----LDNVMLDR-DGH  134 (316)
T ss_pred             ---EEEEEECCCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHeEECC-CCC
Confidence               27899999975 443333      334457888899999999999999 99999999999     99999975 478


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .....+.+++|..|+||
T Consensus       135 ~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (316)
T cd05620         135 IKIADFGMCKENVFGDNRASTFCGTPDYIAP  165 (316)
T ss_pred             EEeCccCCCeecccCCCceeccCCCcCccCH
Confidence            999999998732  23345567899999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.11  E-value=2e-11  Score=127.73  Aligned_cols=147  Identities=16%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCch---HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPS---SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~---~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.++.       .+|+|.+.+... ......   +..++++.++||||++....|           ..+.  
T Consensus        57 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~-----------~~~~--  116 (370)
T cd05621          57 GEVQLVRHKSSQK-------VYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAF-----------QDDK--  116 (370)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEE-----------EcCC--
Confidence            5677777777776       778887654211 111111   123378889999999766555           1211  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|. .++..++.-       ...+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus       117 --~~~lv~Ey~~gg~L~~~l~~-------~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLK-----p~NILl~~-~~~~  181 (370)
T cd05621         117 --YLYMVMEYMPGGDLVNLMSN-------YDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVK-----PDNMLLDK-HGHL  181 (370)
T ss_pred             --EEEEEEcCCCCCcHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHEEECC-CCCE
Confidence              2789999997 466665531       236778889999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....   ......++|.+|+||
T Consensus       182 kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aP  212 (370)
T cd05621         182 KLADFGTCMKMDETGMVRCDTAVGTPDYISP  212 (370)
T ss_pred             EEEecccceecccCCceecccCCCCcccCCH
Confidence            9999999874321   123467899999998

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.11  E-value=2.2e-11  Score=127.66  Aligned_cols=129  Identities=16%  Similarity=0.082  Sum_probs=94.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+.....  ...+..-.+|  ++..++|+||+.....|.           ...  
T Consensus        15 g~Vy~~~~~~~~~-------~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~-----------~~~--   74 (381)
T cd05626          15 GEVCLACKVDTHA-------LYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQ-----------DKD--   74 (381)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEe-----------cCC--
Confidence            6788888888887       889988754311  1111111223  788899999997766551           111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.++|++.. ++..++.      .....+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        75 --~~~lv~E~~~gg~L~~~l~------~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlK-----p~Nili~~-~~~~  140 (381)
T cd05626          75 --NLYFVMDYIPGGDMMSLLI------RMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIK-----PDNILIDL-DGHI  140 (381)
T ss_pred             --EEEEEEecCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCc-----HHHEEECC-CCCE
Confidence              27889999974 5545543      33346788899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 kL~DFGl~~  149 (381)
T cd05626         141 KLTDFGLCT  149 (381)
T ss_pred             EEeeCcCCc
Confidence            999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG4645|consensus

Probab=99.11  E-value=1.5e-11  Score=139.30  Aligned_cols=151  Identities=19%  Similarity=0.161  Sum_probs=107.8

Q ss_pred             hhccccCCCCCCCcChH----hHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        335 RIRKDENGIPLSEENFE----EAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       335 ~~~~~~~~~~~~~~n~~----eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      .+..+.-|..|++-|.+    -|+|.+.-.-... .+|.--+|  +|..++|||+|+...+   -++     .+      
T Consensus      1242 ~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGV---EvH-----Re------ 1307 (1509)
T KOG4645|consen 1242 FIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGV---EVH-----RE------ 1307 (1509)
T ss_pred             ccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCce---eec-----HH------
Confidence            34444555555555544    4888876443222 33333344  7899999999964321   111     11      


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++..|++|+ +++...+++..+      .|+...+.|..|++.|+.+ |..+|+|||||     |+||++.. +|.+|
T Consensus      1308 -kv~IFMEyC~~GsLa~ll~~gri------~dE~vt~vyt~qll~gla~LH~~gIVHRDIK-----~aNI~Ld~-~g~iK 1374 (1509)
T KOG4645|consen 1308 -KVYIFMEYCEGGSLASLLEHGRI------EDEMVTRVYTKQLLEGLAYLHEHGIVHRDIK-----PANILLDF-NGLIK 1374 (1509)
T ss_pred             -HHHHHHHHhccCcHHHHHHhcch------hhhhHHHHHHHHHHHHHHHHHhcCceecCCC-----ccceeeec-CCcEE
Confidence             1557788887 677777776655      5677788899999999999 99999999999     99999985 58999


Q ss_pred             EecCCCCCCCC------CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~------~~~~t~yv~tr~YraP  512 (512)
                      ..|||.|+...      ...+..++||++||||
T Consensus      1375 ~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAP 1407 (1509)
T KOG4645|consen 1375 YGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAP 1407 (1509)
T ss_pred             eecccceeEecCchhcCCHHHHhhcCCchhcCc
Confidence            99999997321      2235689999999999

>KOG4717|consensus

Probab=99.11  E-value=4.4e-11  Score=124.33  Aligned_cols=145  Identities=19%  Similarity=0.191  Sum_probs=111.9

Q ss_pred             hccccCCCCCCCcChHhHHHHhhhhcCCCC-CchHHHHH--HhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeE
Q psy17422        336 IRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSSVASI--LNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRG  412 (512)
Q Consensus       336 ~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~~~el--l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~  412 (512)
                      ++|=-+|+       .||+|-|.+.....- -..-.+|+  |+...|||||.+.+++               ..+..|+.
T Consensus        37 ArHVFTGe-------kVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEVi---------------DTQTKlyL   94 (864)
T KOG4717|consen   37 ARHVFTGE-------KVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVI---------------DTQTKLYL   94 (864)
T ss_pred             hhhhcccc-------eeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehh---------------cccceEEE
Confidence            33444677       899998866432111 11113442  6778899999887776               33455889


Q ss_pred             Eecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCC
Q psy17422        413 SLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFG  490 (512)
Q Consensus       413 ~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfG  490 (512)
                      +++.-. .|+..||--     ......+...+.|+.|++.++.| |...|+|||+|     |+|+-+-..-|.+|+.|||
T Consensus        95 iLELGD~GDl~DyImK-----He~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLK-----PENVVFFEKlGlVKLTDFG  164 (864)
T KOG4717|consen   95 ILELGDGGDLFDYIMK-----HEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLK-----PENVVFFEKLGLVKLTDFG  164 (864)
T ss_pred             EEEecCCchHHHHHHh-----hhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCC-----cceeEEeeecCceEeeecc
Confidence            988876 488888732     22357788999999999999999 99999999999     9999887777999999999


Q ss_pred             CCC-CCCCCCccCeeeeeeeccC
Q psy17422        491 SAS-WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       491 lar-~~~~~~~t~yv~tr~YraP  512 (512)
                      ++. ..|+..+++.||+.+|-||
T Consensus       165 FSNkf~PG~kL~TsCGSLAYSAP  187 (864)
T KOG4717|consen  165 FSNKFQPGKKLTTSCGSLAYSAP  187 (864)
T ss_pred             ccccCCCcchhhcccchhhccCc
Confidence            986 5688889999999999998

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.11  E-value=3e-11  Score=123.34  Aligned_cols=148  Identities=18%  Similarity=0.068  Sum_probs=104.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  ..........|  ++.. .+||||+...+.|           ...+ 
T Consensus         9 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~-----------~~~~-   69 (321)
T cd05591           9 GKVMLAELKGTDE-------VYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCF-----------QTKD-   69 (321)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEE-----------EcCC-
Confidence            5677787777777       78888775432  11111112223  4543 4799998776655           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|||||     |+||++.. .+.
T Consensus        70 ---~~~lv~E~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDik-----p~Nill~~-~~~  134 (321)
T cd05591          70 ---RLFFVMEYVNGGDLMFQIQ------RSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLK-----LDNILLDA-EGH  134 (321)
T ss_pred             ---eEEEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHeEECC-CCC
Confidence               27889999974 4433432      33346778888999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (321)
T cd05591         135 CKLADFGMCKEGILNGVTTTTFCGTPDYIAP  165 (321)
T ss_pred             EEEeecccceecccCCccccccccCccccCH
Confidence            999999998732  23334567899999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.10  E-value=2.8e-11  Score=125.04  Aligned_cols=134  Identities=19%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             HhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        351 EEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      .+|+|.+..... ....... .+|  ++..++||||+.....|.           .++    .++.++++|.. ++..++
T Consensus        58 ~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~-----------~~~----~~~lv~Ey~~~g~L~~~i  122 (340)
T PTZ00426         58 PVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFK-----------DES----YLYLVLEFVIGGEFFTFL  122 (340)
T ss_pred             EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEE-----------eCC----EEEEEEeCCCCCcHHHHH
Confidence            678877643221 1111111 223  788899999997766551           211    27889999974 554444


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCee
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYL  504 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv  504 (512)
                      .      .....+...+..++.|++.++.+ |..+|+|||||     |+||++.. ++.+|++|||+++..... ...++
T Consensus       123 ~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk-----p~NILl~~-~~~ikL~DFG~a~~~~~~-~~~~~  189 (340)
T PTZ00426        123 R------RNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLK-----PENLLLDK-DGFIKMTDFGFAKVVDTR-TYTLC  189 (340)
T ss_pred             H------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCC-----HHHEEECC-CCCEEEecCCCCeecCCC-cceec
Confidence            3      33357788889999999999999 99999999999     99999975 589999999998754322 34578


Q ss_pred             eeeeeccC
Q psy17422        505 VSRFYRAP  512 (512)
Q Consensus       505 ~tr~YraP  512 (512)
                      +|+.|+||
T Consensus       190 gt~~y~aP  197 (340)
T PTZ00426        190 GTPEYIAP  197 (340)
T ss_pred             CChhhcCH
Confidence            99999998

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.10  E-value=3.2e-11  Score=123.28  Aligned_cols=148  Identities=19%  Similarity=0.113  Sum_probs=104.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+..  ....+....+|  ++.. .+||||+.....|           ...+ 
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~-----------~~~~-   69 (320)
T cd05590           9 GKVMLARLKESGR-------LYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCF-----------QTPD-   69 (320)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEE-----------EcCC-
Confidence            5677777777777       78888876432  12222222333  3443 4699999766555           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         -++.+|++|.. ++..++      +.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.
T Consensus        70 ---~~~iv~Ey~~~g~L~~~i------~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlk-----p~NIli~~-~~~  134 (320)
T cd05590          70 ---RLFFVMEFVNGGDLMFHI------QKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLK-----LDNVLLDH-EGH  134 (320)
T ss_pred             ---EEEEEEcCCCCchHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC-----HHHeEECC-CCc
Confidence               27889999975 443333      333457888899999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  165 (320)
T cd05590         135 CKLADFGMCKEGIFNGKTTSTFCGTPDYIAP  165 (320)
T ss_pred             EEEeeCCCCeecCcCCCcccccccCccccCH
Confidence            999999998732  22334457899999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.10  E-value=3.8e-11  Score=123.60  Aligned_cols=129  Identities=19%  Similarity=0.161  Sum_probs=94.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-H--HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-V--ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~--~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .  .+++..++|+||+.....|          .+ ..  
T Consensus        15 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~----------~~-~~--   74 (350)
T cd05573          15 GEVWLVRDKDTGQ-------VYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSF----------QD-EE--   74 (350)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhhe----------ec-CC--
Confidence            6778888887777       88888876432111 11112 2  2278888999999655443          11 11  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.      .....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        75 --~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlk-----p~NIll~~-~~~~  140 (350)
T cd05573          75 --HLYLVMEYMPGGDLMNLLI------RKDVFPEETARFYIAELVLALDSVHKLGFIHRDIK-----PDNILIDA-DGHI  140 (350)
T ss_pred             --eEEEEEcCCCCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHeEECC-CCCE
Confidence              27889999974 5444442      33457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 kL~Dfg~~~  149 (350)
T cd05573         141 KLADFGLCK  149 (350)
T ss_pred             EeecCCCCc
Confidence            999999987

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=3.1e-11  Score=121.40  Aligned_cols=147  Identities=16%  Similarity=0.088  Sum_probs=103.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+..... ....... .+|  +++.++||||++....+          .+ ..  
T Consensus        15 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~----------~~-~~--   74 (291)
T cd05612          15 GRVHLVRDRISEH-------YYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTE----------HD-QR--   74 (291)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhh----------cc-CC--
Confidence            6678888887777       788887643211 1111111 223  68889999998654333          11 11  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..|+.      .+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+
T Consensus        75 --~~~lv~e~~~~~~L~~~~~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~NIli~~-~~~~  140 (291)
T cd05612          75 --FLYMLMEYVPGGELFSYLR------NSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLK-----PENILLDK-EGHI  140 (291)
T ss_pred             --eEEEEEeCCCCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----HHHeEECC-CCCE
Confidence              27889999874 5555543      33346777888899999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..... ....++|+.|+||
T Consensus       141 kl~Dfg~~~~~~~~-~~~~~gt~~y~aP  167 (291)
T cd05612         141 KLTDFGFAKKLRDR-TWTLCGTPEYLAP  167 (291)
T ss_pred             EEEecCcchhccCC-cccccCChhhcCH
Confidence            99999998754332 2245789999998

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.09  E-value=4e-11  Score=123.09  Aligned_cols=148  Identities=16%  Similarity=0.117  Sum_probs=104.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+..... ..... .+|  ++.. .+||||+...+.|           ...+ 
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~-----------~~~~-   69 (329)
T cd05618           9 AKVLLVRLKKTER-------IYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----------QTES-   69 (329)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEE-----------EeCC-
Confidence            5677777777776       78888876543211 11111 222  3443 4799999776655           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.++++|.. ++..++      ..+...+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.
T Consensus        70 ---~~~lv~E~~~~~~L~~~~------~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dik-----p~Nili~~-~~~  134 (329)
T cd05618          70 ---RLFFVIEYVNGGDLMFHM------QRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK-----LDNVLLDS-EGH  134 (329)
T ss_pred             ---EEEEEEeCCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----HHHEEECC-CCC
Confidence               27889999974 443333      333457888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  165 (329)
T cd05618         135 IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAP  165 (329)
T ss_pred             EEEeeCCccccccCCCCccccccCCccccCH
Confidence            999999998742  23334567899999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0579|consensus

Probab=99.09  E-value=5.2e-11  Score=126.23  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=89.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHH--HHhHHhhhhccCCChHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRY--IALQQLYRDQAGRDADVIYRRAQQLL  450 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~y--v~L~~iy~~ka~~d~~~v~~~~~qlL  450 (512)
                      ||...+||+|+.+.+.||         +++  .    |..-+++|.+.--.-  +.|...      .....++..++|+|
T Consensus        82 ILa~CdHP~ivkLl~ayy---------~en--k----LwiliEFC~GGAVDaimlEL~r~------LtE~QIqvvc~q~l  140 (1187)
T KOG0579|consen   82 ILAECDHPVIVKLLSAYY---------FEN--K----LWILIEFCGGGAVDAIMLELGRV------LTEDQIQVVCYQVL  140 (1187)
T ss_pred             hhhcCCChHHHHHHHHHh---------ccC--c----eEEEEeecCCchHhHHHHHhccc------cchHHHHHHHHHHH
Confidence            789999999998887773         332  2    888899998654333  334333      56778999999999


Q ss_pred             HHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        451 HQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       451 ~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      .+|++ |+++|+|||+|     +.||+++-. |.++++|||.+-.+.  ...--+|+||++||||
T Consensus       141 dALn~LHs~~iIHRDLK-----AGNiL~Tld-GdirLADFGVSAKn~~t~qkRDsFIGTPYWMAP  199 (1187)
T KOG0579|consen  141 DALNWLHSQNIIHRDLK-----AGNILLTLD-GDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAP  199 (1187)
T ss_pred             HHHHHHhhcchhhhhcc-----ccceEEEec-CcEeeecccccccchhHHhhhccccCCcccccc
Confidence            99999 99999999999     999999765 999999999964321  1223579999999998

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.08  E-value=3.7e-11  Score=124.80  Aligned_cols=129  Identities=15%  Similarity=0.150  Sum_probs=93.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchHH---HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSSV---ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~~---~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+..... ....-..+   .+++..++|+||+.....|           ...+  
T Consensus        15 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~-----------~~~~--   74 (360)
T cd05627          15 GEVRLVQKKDTGH-------IYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSF-----------QDKR--   74 (360)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEE-----------EcCC--
Confidence            5677777777777       788887754321 11111122   2267888999999766555           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|.. ++..++      ..+...+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        75 --~~~lv~E~~~gg~L~~~l------~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLk-----p~NIli~~-~~~v  140 (360)
T cd05627          75 --NLYLIMEFLPGGDMMTLL------MKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIK-----PDNLLLDA-KGHV  140 (360)
T ss_pred             --EEEEEEeCCCCccHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCC-----HHHEEECC-CCCE
Confidence              27899999974 444444      334457888899999999999999 99999999999     99999975 5899


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 kL~DfG~~~  149 (360)
T cd05627         141 KLSDFGLCT  149 (360)
T ss_pred             EEeeccCCc
Confidence            999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.08  E-value=6.9e-11  Score=118.20  Aligned_cols=155  Identities=23%  Similarity=0.261  Sum_probs=104.2

Q ss_pred             cchhhhcccc-CCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HH---hhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDE-NGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--IL---NDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~-~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll---~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.+.. .|.       .+|+|.+............ .+|  ++   +.++||||++..+.+..          ..
T Consensus        15 g~Vy~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~----------~~   77 (290)
T cd07862          15 GKVFKARDLKNGGR-------FVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV----------SR   77 (290)
T ss_pred             eEEEEEEEcCCCCe-------EEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEec----------cc
Confidence            5566666533 233       6788877544333322222 333  33   34579999976654410          00


Q ss_pred             CCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        404 GNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                      ......++.+++++..++..++...    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+
T Consensus        78 ~~~~~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlk-----p~Nil~~~-~~  147 (290)
T cd07862          78 TDRETKLTLVFEHVDQDLTTYLDKV----PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK-----PQNILVTS-SG  147 (290)
T ss_pred             CCCCCcEEEEEccCCCCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----HHHEEEcC-CC
Confidence            0111237788999987777666421    12236778899999999999999 99999999999     99999975 48


Q ss_pred             eEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++... ........+|.+|+||
T Consensus       148 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aP  178 (290)
T cd07862         148 QIKLADFGLARIYSFQMALTSVVVTLWYRAP  178 (290)
T ss_pred             CEEEccccceEeccCCcccccccccccccCh
Confidence            89999999987432 2334466789999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.07  E-value=5.3e-11  Score=121.73  Aligned_cols=136  Identities=19%  Similarity=0.103  Sum_probs=95.0

Q ss_pred             HhHHHHhhhhc--CCCCCchH-HH--HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHH
Q psy17422        351 EEAMKAVNFAL--IPTTVPSS-VA--SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~--~~~~i~~~-~~--ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv  425 (512)
                      .+|+|.+.+..  ........ .+  ++++.++||||+.....|           ..++    -++.+++++...+    
T Consensus        26 ~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~-----------~~~~----~~~lv~e~~~~~~----   86 (323)
T cd05584          26 IFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAF-----------QTGG----KLYLILEYLSGGE----   86 (323)
T ss_pred             EEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEE-----------ecCC----eEEEEEeCCCCch----
Confidence            77888765421  11111111 22  378899999999766555           1111    2788999987532    


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC--CCCCccC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS--HENEITP  502 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~--~~~~~t~  502 (512)
                       |...+..+.......+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..  .......
T Consensus        87 -L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~  159 (323)
T cd05584          87 -LFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLK-----PENILLDA-QGHVKLTDFGLCKESIHEGTVTHT  159 (323)
T ss_pred             -HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEECC-CCCEEEeeCcCCeecccCCCcccc
Confidence             23333334446677888899999999999 99999999999     99999975 488999999998732  2223345


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      +++|..|+||
T Consensus       160 ~~gt~~y~aP  169 (323)
T cd05584         160 FCGTIEYMAP  169 (323)
T ss_pred             cCCCccccCh
Confidence            6899999998

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.07  E-value=5.3e-11  Score=121.54  Aligned_cols=148  Identities=18%  Similarity=0.104  Sum_probs=104.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHh-hCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILN-DNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~-~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+..++.       .+|+|.+.....  .........|  ++. ..+||||+.....|.           ... 
T Consensus         9 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~-----------~~~-   69 (316)
T cd05619           9 GKVFLAELKGTNQ-------FFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQ-----------TKE-   69 (316)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEE-----------eCC-
Confidence            5677777777776       788888765421  1222222223  444 358999997665551           111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..++      +.+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.
T Consensus        70 ---~~~lv~ey~~~g~L~~~l------~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdik-----p~Nil~~~-~~~  134 (316)
T cd05619          70 ---NLFFVMEYLNGGDLMFHI------QSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLK-----LDNILLDT-DGH  134 (316)
T ss_pred             ---EEEEEEeCCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC-----HHHEEECC-CCC
Confidence               27899999974 544443      333457788889999999999999 99999999999     99999975 478


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  ........++|..|+||
T Consensus       135 ~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (316)
T cd05619         135 IKIADFGMCKENMLGDAKTCTFCGTPDYIAP  165 (316)
T ss_pred             EEEccCCcceECCCCCCceeeecCCccccCH
Confidence            999999998732  22334567899999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.06  E-value=4.6e-11  Score=122.31  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CCCchH---HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TTVPSS---VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~i~~~---~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+...... ......   ..++++..+|+||+.....|           ...+  
T Consensus        15 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~-----------~~~~--   74 (330)
T cd05601          15 GEVQVVREKATGD-------IYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAF-----------QDKD--   74 (330)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEE-----------ecCC--
Confidence            5677788887887       7888887654221 111111   22367788999998765544           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++. .++..++.-.     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        75 --~~~lv~e~~~~~~L~~~l~~~-----~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlk-----p~NIll~~-~~~~  141 (330)
T cd05601          75 --NLYLVMEYQPGGDLLSLLNRY-----EDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIK-----PENVLIDR-TGHI  141 (330)
T ss_pred             --eEEEEECCCCCCCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCc-----hHheEECC-CCCE
Confidence              2789999996 5665555322     1347788899999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCC-CC--CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-EN--EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~--~~t~yv~tr~YraP  512 (512)
                      |++|||+++... ..  .....++|+.|+||
T Consensus       142 kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aP  172 (330)
T cd05601         142 KLADFGSAARLTANKMVNSKLPVGTPDYIAP  172 (330)
T ss_pred             EeccCCCCeECCCCCceeeecccCCccccCH
Confidence            999999987322 11  12235789999998

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.06  E-value=1e-10  Score=117.98  Aligned_cols=149  Identities=19%  Similarity=0.214  Sum_probs=107.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.++.       .+|+|.+.............+|  ++..++|+||+...+.|.           ..+    
T Consensus        20 g~vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~-----------~~~----   77 (301)
T cd07873          20 ATVYKGRSKLTDN-------LVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----------TEK----   77 (301)
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEe-----------cCC----
Confidence            5677777766666       7899887543322211122344  688899999998776651           111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.+++++..++..++.-     .+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++
T Consensus        78 ~~~lv~e~~~~~l~~~l~~-----~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl~  146 (301)
T cd07873          78 SLTLVFEYLDKDLKQYLDD-----CGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLK-----PQNLLINE-RGELKLA  146 (301)
T ss_pred             eEEEEEeccccCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----HHHEEECC-CCcEEEC
Confidence            2788999998766555432     12346788899999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  +........++..|+||
T Consensus       147 dfg~~~~~~~~~~~~~~~~~~~~y~~P  173 (301)
T cd07873         147 DFGLARAKSIPTKTYSNEVVTLWYRPP  173 (301)
T ss_pred             cCcchhccCCCCCcccccceeecccCc
Confidence            99998732  23334456778899998

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.06  E-value=7.6e-11  Score=117.84  Aligned_cols=152  Identities=16%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.......  .......|  +++.++|+||+.....|           ...   
T Consensus         7 g~Vy~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~-----------~~~---   65 (280)
T cd05608           7 GEVSACQMRATGK-------LYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAF-----------QTK---   65 (280)
T ss_pred             eeEEEEEEccCCc-------EEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEE-----------cCC---
Confidence            5677777777787       78888875432111  11111233  78889999999766555           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.++++|.. ++..++..  ........+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        66 -~~~~lv~e~~~~g~L~~~~~~--~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~  136 (280)
T cd05608          66 -TDLCLVMTIMNGGDLRYHIYN--VDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLK-----PENVLLDN-DGNV  136 (280)
T ss_pred             -CeEEEEEeCCCCCCHHHHHHh--ccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCE
Confidence             127899999975 44444321  11223347788899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++...  ......+.+|+.|+||
T Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~g~~~y~aP  166 (280)
T cd05608         137 RISDLGLAVELKDGQSKTKGYAGTPGFMAP  166 (280)
T ss_pred             EEeeCccceecCCCCccccccCCCcCccCH
Confidence            999999987322  2223456889999998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.05  E-value=5.4e-11  Score=124.42  Aligned_cols=147  Identities=15%  Similarity=0.107  Sum_probs=104.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCch---HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPS---SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~---~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.++.       .+|+|.+.+... ......   +..+++..++||||++....|           ....  
T Consensus        57 g~Vy~~~~~~~~~-------~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~-----------~~~~--  116 (371)
T cd05622          57 GEVQLVRHKSTRK-------VYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF-----------QDDR--  116 (371)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EcCC--
Confidence            5677777777777       778887643211 111111   123378888999999765554           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|.. ++..+++       +...+...++.++.|++.++.+ |..+|+|||||     |+||++.. ++.+
T Consensus       117 --~~~lv~Ey~~gg~L~~~~~-------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk-----p~NIll~~-~~~i  181 (371)
T cd05622         117 --YLYMVMEYMPGGDLVNLMS-------NYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVK-----PDNMLLDK-SGHL  181 (371)
T ss_pred             --EEEEEEcCCCCCcHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCC-----HHHEEECC-CCCE
Confidence              27889999974 5555543       1236777888899999999999 99999999999     99999975 5899


Q ss_pred             EEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....   ......+||+.|+||
T Consensus       182 kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  212 (371)
T cd05622         182 KLADFGTCMKMNKEGMVRCDTAVGTPDYISP  212 (371)
T ss_pred             EEEeCCceeEcCcCCcccccCcccCccccCH
Confidence            9999999874321   123467899999998

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0694|consensus

Probab=99.05  E-value=4.9e-11  Score=128.14  Aligned_cols=140  Identities=15%  Similarity=0.081  Sum_probs=107.3

Q ss_pred             CCcChHhHHHHhhhh--cCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCC
Q psy17422        346 SEENFEEAMKAVNFA--LIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD  420 (512)
Q Consensus       346 ~~~n~~eAik~v~~~--~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d  420 (512)
                      ..+|.--|||.+++.  ++...+-+...|  ||... +||.++++...|           +...+    |+-+|+|..++
T Consensus       390 k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~f-----------QT~~~----l~fvmey~~Gg  454 (694)
T KOG0694|consen  390 KGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCF-----------QTKEH----LFFVMEYVAGG  454 (694)
T ss_pred             cCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccc-----------ccCCe----EEEEEEecCCC
Confidence            344556788888764  344555555444  55554 599999888888           34434    89999998755


Q ss_pred             hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC--CC
Q psy17422        421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS--HE  497 (512)
Q Consensus       421 ~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~--~~  497 (512)
                      .     +..+ +....+++...+.|...++.||.| |.++|+.||+|     ..||+++.. |.+||+|||+++..  .+
T Consensus       455 d-----m~~~-~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlK-----LdNiLLD~e-Gh~kiADFGlcKe~m~~g  522 (694)
T KOG0694|consen  455 D-----LMHH-IHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLK-----LDNLLLDTE-GHVKIADFGLCKEGMGQG  522 (694)
T ss_pred             c-----EEEE-EecccccHHHHHHHHHHHHHHHHHHHhcCceeeecc-----hhheEEccc-CcEEecccccccccCCCC
Confidence            4     2122 222348899999999999999999 99999999999     999999865 99999999999843  45


Q ss_pred             CCccCeeeeeeeccC
Q psy17422        498 NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 ~~~t~yv~tr~YraP  512 (512)
                      +.-+++|||+-|+||
T Consensus       523 ~~TsTfCGTpey~aP  537 (694)
T KOG0694|consen  523 DRTSTFCGTPEFLAP  537 (694)
T ss_pred             CccccccCChhhcCh
Confidence            667789999999998

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.05  E-value=5.7e-11  Score=119.04  Aligned_cols=150  Identities=17%  Similarity=0.101  Sum_probs=106.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CC-CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IP-TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~-~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.... .. .......+|  +++.++|+|++.....|.           ..+  
T Consensus        14 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~-----------~~~--   73 (285)
T cd05631          14 GEVCACQVRATGK-------MYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYE-----------TKD--   73 (285)
T ss_pred             EEEEEEEEecCCc-------eEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEc-----------cCC--
Confidence            6678888888887       88888765432 11 111111333  788899999987655541           111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|.. ++..++.-    ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        74 --~~~lv~e~~~~g~L~~~~~~----~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dik-----p~Nill~~-~~~~  141 (285)
T cd05631          74 --ALCLVLTIMNGGDLKFHIYN----MGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLK-----PENILLDD-RGHI  141 (285)
T ss_pred             --eEEEEEEecCCCcHHHHHHh----hCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC-----HHHEEECC-CCCE
Confidence              37889999975 44433321    112246788889999999999999 99999999999     99999964 5889


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++... .......++|..|+||
T Consensus       142 kl~Dfg~~~~~~~~~~~~~~~g~~~y~aP  170 (285)
T cd05631         142 RISDLGLAVQIPEGETVRGRVGTVGYMAP  170 (285)
T ss_pred             EEeeCCCcEEcCCCCeecCCCCCCCccCH
Confidence            999999987432 2334567899999998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.05  E-value=6.1e-11  Score=120.83  Aligned_cols=135  Identities=21%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             HhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+....... ......+|  ++..++|+||++....|           ..++    .++.+++++. .++..++ 
T Consensus        26 ~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-----------~~~~----~~~lv~e~~~~~~L~~~l-   89 (318)
T cd05582          26 LYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAF-----------QTEG----KLYLILDFLRGGDLFTRL-   89 (318)
T ss_pred             EEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEE-----------EcCC----EEEEEEcCCCCCcHHHHH-
Confidence            67877765432111 11111223  78889999999766555           1111    2788999987 4544443 


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CCCccCe
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--ENEITPY  503 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~~~t~y  503 (512)
                           ..+...+...+..++.|++.++.| |..+|+|+|||     |+||++.. ++.+|++|||+++...  ......+
T Consensus        90 -----~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~  158 (318)
T cd05582          90 -----SKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLK-----PENILLDE-EGHIKLTDFGLSKESIDHEKKAYSF  158 (318)
T ss_pred             -----HHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----HHHeEECC-CCcEEEeeccCCcccCCCCCceecc
Confidence                 233457888999999999999999 99999999999     99999975 4889999999987422  2233456


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      ++|..|+||
T Consensus       159 ~g~~~y~aP  167 (318)
T cd05582         159 CGTVEYMAP  167 (318)
T ss_pred             cCChhhcCH
Confidence            789999987

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG4279|consensus

Probab=99.05  E-value=7.3e-11  Score=126.34  Aligned_cols=150  Identities=18%  Similarity=0.221  Sum_probs=100.3

Q ss_pred             hccccCCCCCCCcCh----HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        336 IRKDENGIPLSEENF----EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       336 ~~~~~~~~~~~~~n~----~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      +.++.+|-.|+.-+.    .-|||.|-.... .....-.+|  +-+.++|.|||++-..+           ..  +|.  
T Consensus       583 LGKGTYG~VYA~RD~~tqvrIaIKEIpekds-r~~QPLhEEIaLH~~LrHkNIVrYLGs~-----------se--nGf--  646 (1226)
T KOG4279|consen  583 LGKGTYGTVYAARDMDTQVRIAIKEIPEKDS-REVQPLHEEIALHSTLRHKNIVRYLGSV-----------SE--NGF--  646 (1226)
T ss_pred             eecCceeEEEeeccccceeEEEeeecccccc-hhhccHHHHHHHHHHHhhHhHHHHhhcc-----------CC--CCe--
Confidence            345555655554443    357777754322 111122334  46678999999655444           12  232  


Q ss_pred             eeEEeccccC-ChHHHHHhHHhhhhccC---CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        410 LRGSLPDMTA-DTTRYIALQQLYRDQAG---RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       410 l~~~lpdm~~-d~~~yv~L~~iy~~ka~---~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      +-..|+...+ ++.+.+      +.|..   -.+..+-.|-+|+|+||+| |.+.|+|||||     -.|+++++++|.+
T Consensus       647 ~kIFMEqVPGGSLSsLL------rskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIK-----GDNVLvNTySGvl  715 (1226)
T KOG4279|consen  647 FKIFMEQVPGGSLSSLL------RSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIK-----GDNVLVNTYSGVL  715 (1226)
T ss_pred             EEEEeecCCCCcHHHHH------HhccCCCccchhHHHHHHHHHHHHhhhhhhcceeecccc-----CCcEEEeeccceE
Confidence            3355666664 443333      34321   2567888899999999999 99999999999     9999999999999


Q ss_pred             EEecCCCCCC-CCCCCc-cCeeeeeeeccC
Q psy17422        485 KLCDFGSASW-SHENEI-TPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~-~~~~~~-t~yv~tr~YraP  512 (512)
                      ||.|||.+.. ..-+++ -++.||..||||
T Consensus       716 KISDFGTsKRLAginP~TETFTGTLQYMAP  745 (1226)
T KOG4279|consen  716 KISDFGTSKRLAGINPCTETFTGTLQYMAP  745 (1226)
T ss_pred             EecccccchhhccCCccccccccchhhhCh
Confidence            9999998652 222333 378999999998

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.05  E-value=8.8e-11  Score=119.00  Aligned_cols=156  Identities=17%  Similarity=0.186  Sum_probs=105.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++....     ...+|+|.+.....   .....+|  +++.++||||+.....|.          ..   ...
T Consensus        15 g~Vy~~~~~~~~~-----~~~~a~k~~~~~~~---~~~~~~E~~~l~~l~h~niv~~~~~~~----------~~---~~~   73 (317)
T cd07867          15 GHVYKAKRKDGKD-----EKEYALKQIEGTGI---SMSACREIALLRELKHPNVIALQKVFL----------SH---SDR   73 (317)
T ss_pred             eeEEEEEecCCCc-----cceEEEEEecCCCC---cHHHHHHHHHHHhCCCCCeeeEEEEEe----------cc---CCC
Confidence            5566665443221     22678887653211   1122344  688899999997665541          11   112


Q ss_pred             ceeEEeccccCChHHHHHhHHhhh---hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc---CCC
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYR---DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN---ESK  481 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~---~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~---~~~  481 (512)
                      .++.+++++..++..++.....-.   .....+...++.++.|++.++.+ |..+|+|+|||     |+||++.   ..+
T Consensus        74 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlk-----p~Nil~~~~~~~~  148 (317)
T cd07867          74 KVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLK-----PANILVMGEGPER  148 (317)
T ss_pred             eEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCC-----HHHEEEccCCCCC
Confidence            367888999888877776433211   11236777889999999999999 99999999999     9999984   234


Q ss_pred             CeEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++...     .......++|.+|+||
T Consensus       149 ~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aP  184 (317)
T cd07867         149 GRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP  184 (317)
T ss_pred             CcEEEeeccceeccCCCcccccccCcceecccccCc
Confidence            689999999987321     1234567899999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.05  E-value=5e-11  Score=123.45  Aligned_cols=144  Identities=21%  Similarity=0.239  Sum_probs=101.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+..... ...... .+|  +++.++|+||+...+.|           ...+   
T Consensus        88 g~V~~~~~~~~~~-------~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~---  145 (353)
T PLN00034         88 GTVYKVIHRPTGR-------LYALKVIYGNHE-DTVRRQICREIEILRDVNHPNVVKCHDMF-----------DHNG---  145 (353)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEecCCc-HHHHHHHHHHHHHHHhCCCCCcceeeeEe-----------ccCC---
Confidence            6677887777777       788887643211 111112 233  68889999999766544           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|...+     |..    ....+...+..++.|++.+|.| |..+|+|+|||     |+||++.. .+.+|+
T Consensus       146 -~~~lv~e~~~~~~-----L~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~~~~kL  209 (353)
T PLN00034        146 -EIQVLLEFMDGGS-----LEG----THIADEQFLADVARQILSGIAYLHRRHIVHRDIK-----PSNLLINS-AKNVKI  209 (353)
T ss_pred             -eEEEEEecCCCCc-----ccc----cccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCC-----HHHEEEcC-CCCEEE
Confidence             2778899987543     111    1123456778899999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  .......++|..|+||
T Consensus       210 ~DfG~~~~~~~~~~~~~~~~gt~~y~aP  237 (353)
T PLN00034        210 ADFGVSRILAQTMDPCNSSVGTIAYMSP  237 (353)
T ss_pred             cccccceecccccccccccccCccccCc
Confidence            9999987432  2234567899999998

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.05  E-value=5.2e-11  Score=122.10  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=104.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--CCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--TVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+.+.++.++.       .+|+|.+.+.....  .+..-.+|  ++..+ +|+||+.....|           ...  
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~-----------~~~--   68 (327)
T cd05617           9 AKVLLVRLKKNDQ-------IYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCF-----------QTT--   68 (327)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEE-----------EeC--
Confidence            5677777777776       78888876532111  11111222  45444 689998776655           111  


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                        -.++.++++|.. ++..++      ......+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.
T Consensus        69 --~~~~lv~e~~~~~~L~~~~------~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlk-----p~Nili~~-~~~  134 (327)
T cd05617          69 --SRLFLVIEYVNGGDLMFHM------QRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLK-----LDNVLLDA-DGH  134 (327)
T ss_pred             --CEEEEEEeCCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHEEEeC-CCC
Confidence              138899999975 443333      233357888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|+.|+||
T Consensus       135 ~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (327)
T cd05617         135 IKLTDYGMCKEGLGPGDTTSTFCGTPNYIAP  165 (327)
T ss_pred             EEEeccccceeccCCCCceecccCCcccCCH
Confidence            999999998732  23334567899999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.04  E-value=6.8e-11  Score=121.38  Aligned_cols=147  Identities=18%  Similarity=0.353  Sum_probs=106.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.....+ ..... .+|  +++.++|+||++..+.|.           ..+   
T Consensus        19 g~V~~~~~~~~~~-------~~a~k~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~---   76 (331)
T cd06649          19 GVVTKVQHKPSGL-------IMARKLIHLEIKP-AIRNQIIRELQVLHECNSPYIVGFYGAFY-----------SDG---   76 (331)
T ss_pred             EEEEEEEECCCCc-------EEEEEEeecccCH-HHHHHHHHHHHHHHHCCCCCCCeEEEEEE-----------ECC---
Confidence            5677777777776       6777766532211 11122 233  688899999998766552           111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       .++.++++|.. ++..++.      .....+...+..++.|++.++.+ |.. +|+|+|||     |+||++.. ++.+
T Consensus        77 -~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlk-----p~Nil~~~-~~~~  143 (331)
T cd06649          77 -EISICMEHMDGGSLDQVLK------EAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVK-----PSNILVNS-RGEI  143 (331)
T ss_pred             -EEEEEeecCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCC-----hhhEEEcC-CCcE
Confidence             27789999974 5555543      33346788889999999999999 875 69999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.........+++|..|+||
T Consensus       144 kl~Dfg~~~~~~~~~~~~~~g~~~y~aP  171 (331)
T cd06649         144 KLCDFGVSGQLIDSMANSFVGTRSYMSP  171 (331)
T ss_pred             EEccCcccccccccccccCCCCcCcCCH
Confidence            9999999875444444567899999998

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.04  E-value=1.1e-10  Score=125.69  Aligned_cols=142  Identities=19%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       .+|+|....       ....+|  +|+.++|+||+...+.++           ..+    
T Consensus       183 G~Vy~a~~~~~~~-------~vavK~~~~-------~~~~~E~~iL~~L~HpnIv~l~~~~~-----------~~~----  233 (461)
T PHA03211        183 GCVFESSHPDYPQ-------RVVVKAGWY-------ASSVHEARLLRRLSHPAVLALLDVRV-----------VGG----  233 (461)
T ss_pred             eEEEEEEECCCCC-------EEEEecccc-------cCHHHHHHHHHHCCCCCCCcEEEEEE-----------ECC----
Confidence            6778888887777       788886432       112333  789999999997665441           111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ..+.+++++..++..++.-     .....+...+..++.|++.+|.| |..+|+|||||     |+||++.. .+.+|++
T Consensus       234 ~~~lv~e~~~~~L~~~l~~-----~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLK-----P~NILl~~-~~~vkL~  302 (461)
T PHA03211        234 LTCLVLPKYRSDLYTYLGA-----RLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIK-----TENVLVNG-PEDICLG  302 (461)
T ss_pred             EEEEEEEccCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCC-----HHHEEECC-CCCEEEc
Confidence            1567788887777666532     12247888999999999999999 99999999999     99999975 4789999


Q ss_pred             cCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        488 DFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      |||+++.....    .....+||..|+||
T Consensus       303 DFGla~~~~~~~~~~~~~~~~GT~~Y~AP  331 (461)
T PHA03211        303 DFGAACFARGSWSTPFHYGIAGTVDTNAP  331 (461)
T ss_pred             ccCCceecccccccccccccCCCcCCcCH
Confidence            99998732211    12245799999998

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.03  E-value=1.1e-10  Score=116.16  Aligned_cols=149  Identities=22%  Similarity=0.242  Sum_probs=107.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++|+|+++..+.|          .+. +   
T Consensus        14 ~~vy~~~~~~~g~-------~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~----------~~~-~---   72 (284)
T cd07839          14 GTVFKAKNRETHE-------IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVL----------HSD-K---   72 (284)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHh----------ccC-C---
Confidence            5677888888887       7888877543222222222 233  67888999999655544          111 1   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.+++++..++..++.-     .....+...+..++.|+++++.+ |..+|+|+|||     |+||++.. ++.+|+
T Consensus        73 -~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~-----~~nil~~~-~~~~~l  140 (284)
T cd07839          73 -KLTLVFEYCDQDLKKYFDS-----CNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLK-----PQNLLINK-NGELKL  140 (284)
T ss_pred             -ceEEEEecCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----HHHEEEcC-CCcEEE
Confidence             2778899988766555431     12347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  ........+++.+|+||
T Consensus       141 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  168 (284)
T cd07839         141 ADFGLARAFGIPVRCYSAEVVTLWYRPP  168 (284)
T ss_pred             CccchhhccCCCCCCcCCCccccCCcCh
Confidence            999998732  22334556788899998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.03  E-value=1.4e-10  Score=122.04  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=95.3

Q ss_pred             HhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQL  430 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~i  430 (512)
                      .+|+|.+...    .......++++.++|+||++..+.|           ..+.    .++.+++++..++..++.    
T Consensus       121 ~v~vK~~~~~----~~~~~E~~il~~l~h~~iv~~~~~~-----------~~~~----~~~lv~e~~~~~l~~~l~----  177 (392)
T PHA03207        121 KVIVKAVTGG----KTPGREIDILKTISHRAIINLIHAY-----------RWKS----TVCMVMPKYKCDLFTYVD----  177 (392)
T ss_pred             eEEEEecccc----ccHHHHHHHHHhcCCCCccceeeeE-----------eeCC----EEEEEehhcCCCHHHHHH----
Confidence            5677765432    1111222378889999999776554           1111    277889998887766652    


Q ss_pred             hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeee
Q psy17422        431 YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLV  505 (512)
Q Consensus       431 y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~  505 (512)
                        .+.......+..++.|++.++.+ |..+|+|||||     |+||++.. .+.++++|||+++....    .....+++
T Consensus       178 --~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlk-----p~Nill~~-~~~~~l~DfG~a~~~~~~~~~~~~~~~~g  249 (392)
T PHA03207        178 --RSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVK-----TENIFLDE-PENAVLGDFGAACKLDAHPDTPQCYGWSG  249 (392)
T ss_pred             --hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEEcC-CCCEEEccCccccccCccccccccccccc
Confidence              23447788999999999999999 99999999999     99999975 58899999999863221    12235789


Q ss_pred             eeeeccC
Q psy17422        506 SRFYRAP  512 (512)
Q Consensus       506 tr~YraP  512 (512)
                      |..|+||
T Consensus       250 t~~y~aP  256 (392)
T PHA03207        250 TLETNSP  256 (392)
T ss_pred             ccCccCH
Confidence            9999998

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.03  E-value=9.3e-11  Score=122.57  Aligned_cols=147  Identities=15%  Similarity=0.114  Sum_probs=104.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH---HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS---VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~---~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+... .......   ..++++.++||||+.....|           ....  
T Consensus        57 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~-----------~~~~--  116 (370)
T cd05596          57 GEVQLVRHKSSKQ-------VYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAF-----------QDDK--  116 (370)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEE-----------ecCC--
Confidence            5677777777777       788888754321 1111111   12378889999999765544           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.++++|.. ++..++.       +...+...+..++.|++.++.+ |..+|+|||||     |+||++.. ++.+
T Consensus       117 --~~~lv~Ey~~gg~L~~~l~-------~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk-----p~NILl~~-~~~~  181 (370)
T cd05596         117 --YLYMVMEYMPGGDLVNLMS-------NYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVK-----PDNMLLDK-SGHL  181 (370)
T ss_pred             --EEEEEEcCCCCCcHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHEEEcC-CCCE
Confidence              27899999974 5554442       1236677888899999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....   ......+||..|+||
T Consensus       182 kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aP  212 (370)
T cd05596         182 KLADFGTCMKMDANGMVRCDTAVGTPDYISP  212 (370)
T ss_pred             EEEeccceeeccCCCcccCCCCCCCcCeECH
Confidence            9999999874321   123456899999998

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.03  E-value=8.5e-11  Score=120.20  Aligned_cols=147  Identities=16%  Similarity=0.078  Sum_probs=103.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH-----HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS-----ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e-----ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++.+|.       .+|+|.+.+...  ......-.+|     +++.++||||++..+.|.           ..
T Consensus        13 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~-----------~~   74 (324)
T cd05589          13 GKVLLAEYKKTGE-------LYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQ-----------TE   74 (324)
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEE-----------cC
Confidence            5677777777777       788888764321  1111111122     235668999997766551           11


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      +    -++.+++++.. ++..++.       +...+...+..++.|++.++.+ |..+|+|||||     |+||++.. .
T Consensus        75 ~----~~~lv~E~~~~~~L~~~~~-------~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlk-----p~Nill~~-~  137 (324)
T cd05589          75 D----HVCFVMEYAAGGDLMMHIH-------TDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLK-----LDNLLLDT-E  137 (324)
T ss_pred             C----EEEEEEcCCCCCcHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCC-----HHHeEECC-C
Confidence            1    27889999975 4433321       2347888899999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++..  .......+++|..|+||
T Consensus       138 ~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aP  170 (324)
T cd05589         138 GFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAP  170 (324)
T ss_pred             CcEEeCcccCCccCCCCCCcccccccCccccCH
Confidence            89999999998732  22334567899999998

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0201|consensus

Probab=99.03  E-value=1.5e-11  Score=126.13  Aligned_cols=148  Identities=18%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      |.|+|+.+..++.       .+|+|.+...-....|-.--+|  +|...+++||..+...|          +..     .
T Consensus        27 G~Vyk~~d~~t~k-------~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsy----------l~g-----~   84 (467)
T KOG0201|consen   27 GEVYKAIDNKTKK-------VVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSY----------LKG-----T   84 (467)
T ss_pred             ceeeeeeeccccc-------eEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhhe----------eec-----c
Confidence            8899999998888       9999998765433333222233  57888889987655444          111     1


Q ss_pred             ceeEEeccccCCh-HHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTADT-TRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~d~-~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -|.+.|++|.... ...++.      ....++..+...++++|.++.| |..+.+|||||     +.||++... |.+|+
T Consensus        85 ~LwiiMey~~gGsv~~lL~~------~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIK-----aanil~s~~-g~vkl  152 (467)
T KOG0201|consen   85 KLWIIMEYCGGGSVLDLLKS------GNILDEFEIAVILREVLKGLDYLHSEKKIHRDIK-----AANILLSES-GDVKL  152 (467)
T ss_pred             cHHHHHHHhcCcchhhhhcc------CCCCccceeeeehHHHHHHhhhhhhcceeccccc-----ccceeEecc-CcEEE
Confidence            1667788877443 222222      2224667778889999999999 99999999999     999999876 99999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||.+-..+  ...-.++|||++||||
T Consensus       153 ~DfgVa~ql~~~~~rr~tfvGTPfwMAP  180 (467)
T KOG0201|consen  153 ADFGVAGQLTNTVKRRKTFVGTPFWMAP  180 (467)
T ss_pred             Eecceeeeeechhhccccccccccccch
Confidence            9999976332  2222689999999999

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.03  E-value=1.9e-10  Score=119.60  Aligned_cols=144  Identities=17%  Similarity=0.102  Sum_probs=104.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.++.++.       .+|+|....    ..... -..+++.++|+||++..+.|.          . ..    ..
T Consensus        80 g~Vy~~~~~~~~~-------~valK~~~~----~~~~~-E~~~l~~l~h~~iv~~~~~~~----------~-~~----~~  132 (357)
T PHA03209         80 GRVFVATKPGQPD-------PVVLKIGQK----GTTLI-EAMLLQNVNHPSVIRMKDTLV----------S-GA----IT  132 (357)
T ss_pred             eEEEEEEECCCCc-------eEEEEeCCc----cccHH-HHHHHHhCCCCCCcChhheEE----------e-CC----ee
Confidence            6777887777776       677775322    11111 122688899999997665541          1 11    15


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecC
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDF  489 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~Df  489 (512)
                      +.+++++..++..++..     .....+...+..++.|++.++.+ |..+|+|||||     |+||++.. .+.+|++||
T Consensus       133 ~lv~e~~~~~l~~~l~~-----~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~Nill~~-~~~~kl~Df  201 (357)
T PHA03209        133 CMVLPHYSSDLYTYLTK-----RSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVK-----TENIFIND-VDQVCIGDL  201 (357)
T ss_pred             EEEEEccCCcHHHHHHh-----ccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCCEEEecC
Confidence            68889988877666532     22346788999999999999999 99999999999     99999975 478999999


Q ss_pred             CCCCCCC-CCCccCeeeeeeeccC
Q psy17422        490 GSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       490 Glar~~~-~~~~t~yv~tr~YraP  512 (512)
                      |+++... ......+.+|..|+||
T Consensus       202 G~a~~~~~~~~~~~~~gt~~y~aP  225 (357)
T PHA03209        202 GAAQFPVVAPAFLGLAGTVETNAP  225 (357)
T ss_pred             ccccccccCcccccccccccccCC
Confidence            9987432 2233457899999998

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.02  E-value=1.4e-10  Score=118.47  Aligned_cols=148  Identities=15%  Similarity=0.069  Sum_probs=104.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+..  ....+....+|  ++..+ +|+||+.....|.           ..+ 
T Consensus         9 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~-----------~~~-   69 (318)
T cd05570           9 GKVLLAELKGTDE-------LYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQ-----------TKD-   69 (318)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEE-----------cCC-
Confidence            5677777777776       78888776432  11122222233  45554 6999997766652           111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..+      .+.+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.
T Consensus        70 ---~~~lv~e~~~~~~L~~~------~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk-----p~Nill~~-~~~  134 (318)
T cd05570          70 ---RLFFVMEYVNGGDLMFH------IQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLK-----LDNVLLDS-EGH  134 (318)
T ss_pred             ---EEEEEEcCCCCCCHHHH------HHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCC-----HHHeEECC-CCc
Confidence               27889999975 43333      3334457888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       135 ~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aP  165 (318)
T cd05570         135 IKIADFGMCKEGILGGVTTSTFCGTPDYIAP  165 (318)
T ss_pred             EEecccCCCeecCcCCCcccceecCccccCH
Confidence            999999998742  22233456899999998

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.02  E-value=9.9e-11  Score=119.71  Aligned_cols=148  Identities=16%  Similarity=0.092  Sum_probs=101.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCC-CCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACV-NLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~-ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+...  ...+.....|  ++..+.|+ +|+.....|           ...+ 
T Consensus        14 g~Vy~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----------~~~~-   74 (324)
T cd05587          14 GKVMLAERKGTDE-------LYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----------QTMD-   74 (324)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEE-----------EcCC-
Confidence            5677777777776       788887754321  1122122233  56666665 455444444           1111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..++      ..........+..++.|++.++.| |..+|+|+|||     |+||++.. ++.
T Consensus        75 ---~~~lv~E~~~~g~L~~~~------~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk-----p~Nill~~-~~~  139 (324)
T cd05587          75 ---RLYFVMEYVNGGDLMYHI------QQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLK-----LDNVMLDA-EGH  139 (324)
T ss_pred             ---EEEEEEcCCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHeEEcC-CCC
Confidence               27889999874 444343      233346777888999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|..|+||
T Consensus       140 ~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  170 (324)
T cd05587         140 IKIADFGMCKENIFGGKTTRTFCGTPDYIAP  170 (324)
T ss_pred             EEEeecCcceecCCCCCceeeecCCccccCh
Confidence            999999998732  23334567899999998

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0197|consensus

Probab=99.01  E-value=2.6e-10  Score=119.73  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             HhHHHHhhhhcCCCCCc-hH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVP-SS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~-~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      ++|+|.+...    .+. .. ++|  +|..++|+|||++..+.           .    +.-|+++++++|. .++.+|+
T Consensus       232 ~vavk~ik~~----~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~-----------~----~~~piyIVtE~m~~GsLl~yL  292 (468)
T KOG0197|consen  232 KVAVKTIKEG----SMSPEAFLREAQIMKKLRHEKLVKLYGVC-----------T----KQEPIYIVTEYMPKGSLLDYL  292 (468)
T ss_pred             cccceEEecc----ccChhHHHHHHHHHHhCcccCeEEEEEEE-----------e----cCCceEEEEEecccCcHHHHh
Confidence            7888887643    222 22 344  89999999999877655           1    1228999999998 5677776


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH  496 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~  496 (512)
                      +-    ..+..........++.|+++|..| .+++++|||+.     ++||+|... ..+|++|||+||...
T Consensus       293 r~----~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLA-----ARNiLV~~~-~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  293 RT----REGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLA-----ARNILVDED-LVVKISDFGLARLIG  354 (468)
T ss_pred             hh----cCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhh-----hhheeeccC-ceEEEcccccccccC
Confidence            53    345668888999999999999999 99999999999     999999764 899999999999543

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.01  E-value=1.3e-10  Score=119.36  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=103.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCch--HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPS--SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~--~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.++.       .+|+|.+.+..  .......  ....++...+|+||+.....|           ...+  
T Consensus        15 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----------~~~~--   74 (331)
T cd05597          15 GEVAVVKMKNTGQ-------VYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAF-----------QDEN--   74 (331)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEE-----------ecCC--
Confidence            5667777777776       78888775421  1111111  122267778999999766555           1222  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|. .++..++.-     .........++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        75 --~~~lv~e~~~g~~L~~~l~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~Nill~~-~~~~  141 (331)
T cd05597          75 --NLYLVMDYYVGGDLLTLLSK-----FEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIK-----PDNVLLDK-NGHI  141 (331)
T ss_pred             --eEEEEEecCCCCcHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCC-----HHHEEECC-CCCE
Confidence              2789999986 466555532     12346778889999999999999 99999999999     99999964 5889


Q ss_pred             EEecCCCCCCCC-CC--CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-EN--EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~--~~t~yv~tr~YraP  512 (512)
                      |++|||+++... ..  .....++|+.|+||
T Consensus       142 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aP  172 (331)
T cd05597         142 RLADFGSCLRLLADGTVQSNVAVGTPDYISP  172 (331)
T ss_pred             EEEECCceeecCCCCCccccceeccccccCH
Confidence            999999986321 11  12345799999998

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.01  E-value=1.3e-09  Score=117.32  Aligned_cols=123  Identities=20%  Similarity=0.184  Sum_probs=98.6

Q ss_pred             HHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422          7 QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus         7 Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      -++-++++|+|+|+|++|+.++.+|+.+|+++|+.+|.|.+ .+|++|        ||.. ++.+.    +.||++.++.
T Consensus       124 F~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~----~~n~~v~v~~  189 (637)
T TIGR03693       124 FELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAE----ETDDALLVQE  189 (637)
T ss_pred             hhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHH----HhCCCCceEe
Confidence            34459999999999999999999999999999999999999 999999        6665 44443    3899998887


Q ss_pred             EeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNF  166 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  166 (512)
                      ....-.                                                                    ..-.+.
T Consensus       190 i~~~~~--------------------------------------------------------------------~dl~ev  201 (637)
T TIGR03693       190 IDFAED--------------------------------------------------------------------QHLHEA  201 (637)
T ss_pred             ccCCcc--------------------------------------------------------------------hhHHHh
Confidence            653111                                                                    112345


Q ss_pred             CccccEEEEcCC--ChHHHHHHHHHHHhCC---CcEEEEeeeceeEEEEE
Q psy17422        167 FQSFHMVISTNL--PETTLIELSKTLWSLN---IPLLACRSYGFIGSIRL  211 (512)
Q Consensus       167 ~~~~~~Vi~~~~--~~~~~~~l~~~~~~~~---ip~i~~~~~G~~G~v~~  211 (512)
                      ++++|+|+...|  ....+..+++.|.+.+   +|++.++..++.|-++.
T Consensus       202 ~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft  251 (637)
T TIGR03693       202 FEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ  251 (637)
T ss_pred             hcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC
Confidence            788999999886  4557889999999999   77888888888887766

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.00  E-value=9.4e-11  Score=120.57  Aligned_cols=147  Identities=18%  Similarity=0.328  Sum_probs=105.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.....+ ..... .+|  ++..++|+||+...+.|+           ..+   
T Consensus        19 g~V~~~~~~~~~~-------~~a~k~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~---   76 (333)
T cd06650          19 GVVFKVSHKPSGL-------IMARKLIHLEIKP-AIRNQIIRELQVLHECNSPYIVGFYGAFY-----------SDG---   76 (333)
T ss_pred             EEEEEEEECCCCc-------EEEEEEeecccCH-HHHHHHHHHHHHHHHCCCCcccceeEEEE-----------ECC---
Confidence            6677777777776       6777765432211 11112 344  688899999998776663           111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       .++.+++++. .++..++.      .....+...+..++.+++.++.| |. .+|+|+|||     |+||++.. ++.+
T Consensus        77 -~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlk-----p~Nili~~-~~~~  143 (333)
T cd06650          77 -EISICMEHMDGGSLDQVLK------KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK-----PSNILVNS-RGEI  143 (333)
T ss_pred             -EEEEEEecCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCC-----hhhEEEcC-CCCE
Confidence             2778999987 46655553      22346778888999999999999 86 479999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.........+++|..|+||
T Consensus       144 kL~Dfg~~~~~~~~~~~~~~~~~~y~aP  171 (333)
T cd06650         144 KLCDFGVSGQLIDSMANSFVGTRSYMSP  171 (333)
T ss_pred             EEeeCCcchhhhhhccccCCCCccccCH
Confidence            9999999874433334557889999998

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=98.99  E-value=2.4e-10  Score=113.68  Aligned_cols=151  Identities=23%  Similarity=0.274  Sum_probs=108.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++|+|+++..+.|.           ..+   
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~---   72 (285)
T cd07861          14 GVVYKGRNKKTGQ-------IVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLM-----------QES---   72 (285)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEe-----------eCC---
Confidence            5677777777777       7888877543322323223 233  678889999998776651           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.+++++..++..++...   ......+...+..++.|++.+|.+ |..+|+|+|++     |+||++.. ++.+|+
T Consensus        73 -~~~~v~e~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~-----p~nil~~~-~~~~~l  142 (285)
T cd07861          73 -RLYLIFEFLSMDLKKYLDSL---PKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLK-----PQNLLIDN-KGVIKL  142 (285)
T ss_pred             -eEEEEEecCCCCHHHHHhcC---CCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC-----HHHEEEcC-CCcEEE
Confidence             27889999987766665321   122347888999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  +....+..+++.+|+||
T Consensus       143 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  170 (285)
T cd07861         143 ADFGLARAFGIPVRVYTHEVVTLWYRAP  170 (285)
T ss_pred             CcccceeecCCCcccccCCcccccccCh
Confidence            999998632  22334455678889888

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.99  E-value=1.6e-10  Score=118.23  Aligned_cols=148  Identities=15%  Similarity=0.067  Sum_probs=102.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+...  ...+.....|  ++.... |++|+.....|           ...  
T Consensus        14 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----------~~~--   73 (323)
T cd05615          14 GKVMLAERKGTDE-------LYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCF-----------QTV--   73 (323)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEE-----------ecC--
Confidence            6678888888887       889998765321  1121112223  455554 45565544444           111  


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                        -.++.++|++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.
T Consensus        74 --~~~~lv~Ey~~~g~L~~~i~------~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDik-----p~Nill~~-~~~  139 (323)
T cd05615          74 --DRLYFVMEYVNGGDLMYHIQ------QVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLK-----LDNVMLDS-EGH  139 (323)
T ss_pred             --CEEEEEEcCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHeEECC-CCC
Confidence              137899999974 5544442      33346788899999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......+++|+.|+||
T Consensus       140 ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  170 (323)
T cd05615         140 IKIADFGMCKEHMVDGVTTRTFCGTPDYIAP  170 (323)
T ss_pred             EEEeccccccccCCCCccccCccCCccccCH
Confidence            999999998742  22223456789999998

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG1152|consensus

Probab=98.98  E-value=3.8e-10  Score=119.04  Aligned_cols=152  Identities=20%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             hhccccCCCC----CCCcChHhHHHHhhhhc----------CCCCCchHHHHHHhhC---CCCCCCcCCchhhhhHHhhh
Q psy17422        335 RIRKDENGIP----LSEENFEEAMKAVNFAL----------IPTTVPSSVASILNDN---ACVNLTSKSEPFWILAKAVK  397 (512)
Q Consensus       335 ~~~~~~~~~~----~~~~n~~eAik~v~~~~----------~~~~i~~~~~ell~~~---~~~ni~~~~~~fw~l~~alk  397 (512)
                      ++..+++|+.    +...|.+|.+|.+++..          .=..+|.+++ ||.-+   .|+||+++-+.|        
T Consensus       568 ~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIq-Ila~l~~~sH~NIlKlLdfF--------  638 (772)
T KOG1152|consen  568 PLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQ-ILATLNKHSHENILKLLDFF--------  638 (772)
T ss_pred             eccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHH-HHHHhhhcCccchhhhhhee--------
Confidence            3444444432    34445588888887541          2356787754 34444   499999887766        


Q ss_pred             hhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccc
Q psy17422        398 DFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIH  476 (512)
Q Consensus       398 ~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIl  476 (512)
                         +++++    .+..+|--..+    +.|...+.-|...++.+.+.+.+|+..++.+ |+.+|+|||||     -+|+.
T Consensus       639 ---Eddd~----yyl~te~hg~g----IDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdik-----denvi  702 (772)
T KOG1152|consen  639 ---EDDDY----YYLETEVHGEG----IDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIK-----DENVI  702 (772)
T ss_pred             ---ecCCe----eEEEecCCCCC----cchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccc-----cccEE
Confidence               33333    44555443322    5566666666778999999999999999999 99999999999     99998


Q ss_pred             ccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        477 VNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       477 l~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +. +.|.+|++|||.|......+.-.++||.-|.||
T Consensus       703 vd-~~g~~klidfgsaa~~ksgpfd~f~gtv~~aap  737 (772)
T KOG1152|consen  703 VD-SNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAP  737 (772)
T ss_pred             Ee-cCCeEEEeeccchhhhcCCCcceeeeeccccch
Confidence            86 569999999999988777788899999999998

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=98.98  E-value=2.9e-10  Score=116.71  Aligned_cols=70  Identities=20%  Similarity=0.197  Sum_probs=54.6

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeecc
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRA  511 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~Yra  511 (512)
                      .+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|++|||+++.....    ......++..|+|
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiK-----p~Nil~~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  244 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLASRKCIHRDLA-----ARNILLSE-NNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMA  244 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEECCCCc-----cceEEEcC-CCcEEEeecccccccccCcchhcccCCCCCccccC
Confidence            5567788899999999999 99999999999     99999975 488999999998742111    1112344567888


Q ss_pred             C
Q psy17422        512 P  512 (512)
Q Consensus       512 P  512 (512)
                      |
T Consensus       245 P  245 (338)
T cd05102         245 P  245 (338)
T ss_pred             c
Confidence            7

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.97  E-value=1.8e-10  Score=117.80  Aligned_cols=148  Identities=16%  Similarity=0.083  Sum_probs=101.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+...  .........+  ++... +|++|+.....|.           ..+ 
T Consensus        14 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~-----------~~~-   74 (323)
T cd05616          14 GKVMLAERKGTDE-------LYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQ-----------TMD-   74 (323)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEe-----------cCC-
Confidence            5678888877777       788887764321  1111111222  34443 4677775555441           111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+++++.. ++..++      ......+...+..++.|++.++.+ |..+|+|||||     |+||++.. ++.
T Consensus        75 ---~~~lv~E~~~~g~L~~~~------~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~Nill~~-~~~  139 (323)
T cd05616          75 ---RLYFVMEYVNGGDLMYQI------QQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLK-----LDNVMLDS-EGH  139 (323)
T ss_pred             ---EEEEEEcCCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCC-----HHHeEECC-CCc
Confidence               27889999974 444343      223346778899999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......++||+.|+||
T Consensus       140 ~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  170 (323)
T cd05616         140 IKIADFGMCKENMWDGVTTKTFCGTPDYIAP  170 (323)
T ss_pred             EEEccCCCceecCCCCCccccCCCChhhcCH
Confidence            999999998732  22234467889999998

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.97  E-value=1.9e-10  Score=125.12  Aligned_cols=159  Identities=17%  Similarity=0.136  Sum_probs=107.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhc-CCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDN-EGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~-~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ......+|  ++...+|+|++.....|.        ..+. +...
T Consensus        46 G~Vy~a~~~~~g~-------~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~--------~~~~~~~~~  110 (496)
T PTZ00283         46 GTVLCAKRVSDGE-------PFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFA--------KKDPRNPEN  110 (496)
T ss_pred             EEEEEEEEcCCCC-------EEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeeccee--------cccccCccc
Confidence            5677777777777       88999875432111 11111233  467778999987655541        0000 0111


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      ..-+..+++++. .++..++.-.  .......+...+..++.|++.++.| |..+|+|||||     |+||++.. ++.+
T Consensus       111 ~~~i~lV~Ey~~~gsL~~~l~~~--~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLK-----P~NILl~~-~~~v  182 (496)
T PTZ00283        111 VLMIALVLDYANAGDLRQEIKSR--AKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIK-----SANILLCS-NGLV  182 (496)
T ss_pred             ceEEEEEEeCCCCCcHHHHHHHh--hccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEEeC-CCCE
Confidence            123678889987 4666665421  1222346778889999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++...    ......++||..|+||
T Consensus       183 kL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aP  214 (496)
T PTZ00283        183 KLGDFGFSKMYAATVSDDVGRTFCGTPYYVAP  214 (496)
T ss_pred             EEEecccCeeccccccccccccccCCcceeCH
Confidence            999999987321    2234567899999998

>KOG0668|consensus

Probab=98.97  E-value=1.6e-10  Score=109.72  Aligned_cols=114  Identities=22%  Similarity=0.287  Sum_probs=84.5

Q ss_pred             HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ||+.+. +|||+++.+..            ++.....| ..++++..  ...   .+.+|+.   ..-..++.|++++|+
T Consensus        85 IL~nL~gg~NIi~L~DiV------------~Dp~Sktp-aLiFE~v~--n~D---fk~ly~t---l~d~dIryY~~elLk  143 (338)
T KOG0668|consen   85 ILQNLRGGPNIIKLLDIV------------KDPESKTP-SLIFEYVN--NTD---FKQLYPT---LTDYDIRYYIYELLK  143 (338)
T ss_pred             HHHhccCCCCeeehhhhh------------cCccccCc-hhHhhhhc--ccc---HHHHhhh---hchhhHHHHHHHHHH
Confidence            577776 99999876655            11112222 22233332  222   3444533   445679999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC-CCCCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS-WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar-~~~~~~~t~yv~tr~YraP  512 (512)
                      +|.| |+.||+|||+|     |.|+.+++....++++|.|+|. ..++..+.-.|++|+|..|
T Consensus       144 ALdyCHS~GImHRDVK-----PhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGP  201 (338)
T KOG0668|consen  144 ALDYCHSMGIMHRDVK-----PHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGP  201 (338)
T ss_pred             HHhHHHhcCcccccCC-----cceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCc
Confidence            9999 99999999999     9999999888889999999998 5677778888999999876

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.96  E-value=3.7e-10  Score=113.01  Aligned_cols=149  Identities=19%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+.............+|  +++.++|+||+...+.|           ....    
T Consensus        19 ~~vy~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~~----   76 (291)
T cd07844          19 ATVYKGRSKLTGQ-------LVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDII-----------HTKK----   76 (291)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEE-----------ecCC----
Confidence            5677777766666       7889887543222111112344  68888999999766554           1111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ..+.+++++..++.+++.-     .....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|++
T Consensus        77 ~~~lv~e~~~~~L~~~~~~-----~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~-----p~nil~~~-~~~~kl~  145 (291)
T cd07844          77 TLTLVFEYLDTDLKQYMDD-----CGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLK-----PQNLLISE-RGELKLA  145 (291)
T ss_pred             eEEEEEecCCCCHHHHHHh-----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCC-----HHHEEEcC-CCCEEEC
Confidence            2678999998776665431     12346888999999999999999 99999999999     99999975 5889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  +....+..+++..|+||
T Consensus       146 dfg~~~~~~~~~~~~~~~~~~~~~~aP  172 (291)
T cd07844         146 DFGLARAKSVPSKTYSNEVVTLWYRPP  172 (291)
T ss_pred             ccccccccCCCCccccccccccccCCc
Confidence            99998732  22222333567778877

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=98.96  E-value=1.7e-10  Score=118.41  Aligned_cols=149  Identities=15%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH---HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS---VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~---~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.++.       .+|+|.+.+.. ........   ...++...+|+||+.....|           ..++  
T Consensus        15 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~-----------~~~~--   74 (331)
T cd05624          15 GEVAVVKMKHTER-------IYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAF-----------QDEN--   74 (331)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------EcCC--
Confidence            5677777777776       67888765421 11111111   22367778899998766554           1221  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|+++. .++..++.-.     ....+...++.++.|++.++.+ |..+|+|||||     |+||++.. ++.+
T Consensus        75 --~~~lv~Ey~~gg~L~~~l~~~-----~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlk-----p~Nill~~-~~~~  141 (331)
T cd05624          75 --YLYLVMDYYVGGDLLTLLSKF-----EDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIK-----PDNVLLDM-NGHI  141 (331)
T ss_pred             --EEEEEEeCCCCCcHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCc-----hHHEEEcC-CCCE
Confidence              2789999987 5666665421     2346778888999999999999 99999999999     99999974 5889


Q ss_pred             EEecCCCCCCCCC-C--CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE-N--EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~-~--~~t~yv~tr~YraP  512 (512)
                      |++|||+++.... .  .....+||..|+||
T Consensus       142 kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (331)
T cd05624         142 RLADFGSCLKMNQDGTVQSSVAVGTPDYISP  172 (331)
T ss_pred             EEEeccceeeccCCCceeeccccCCcccCCH
Confidence            9999999873221 1  12345789999998

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.96  E-value=3.3e-10  Score=116.11  Aligned_cols=135  Identities=16%  Similarity=0.143  Sum_probs=93.1

Q ss_pred             HhHHHHhhhhcC--CCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHH
Q psy17422        351 EEAMKAVNFALI--PTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTR  423 (512)
Q Consensus       351 ~eAik~v~~~~~--~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~  423 (512)
                      .+|+|.+.+...  ....... .+|  ++..+ +|+||+.....|           ..++    .++.+++++.. ++..
T Consensus        30 ~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~-----------~~~~----~~~lv~e~~~~g~L~~   94 (332)
T cd05614          30 LYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAF-----------QTEA----KLHLILDYVSGGEMFT   94 (332)
T ss_pred             EEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEE-----------ecCC----EEEEEEeCCCCCcHHH
Confidence            778887654321  1111111 222  56766 488998665544           1111    27788999874 4444


Q ss_pred             HHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC---CCCC
Q psy17422        424 YIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS---HENE  499 (512)
Q Consensus       424 yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~---~~~~  499 (512)
                      ++      ..+...+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+|++|||+++..   ....
T Consensus        95 ~l------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlk-----p~Nili~~-~~~~kl~DfG~~~~~~~~~~~~  162 (332)
T cd05614          95 HL------YQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIK-----LENILLDS-EGHVVLTDFGLSKEFLSEEKER  162 (332)
T ss_pred             HH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCC-----HHHeEECC-CCCEEEeeCcCCccccccCCCc
Confidence            43      233347788999999999999999 99999999999     99999975 488999999998732   1222


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      ...++||..|+||
T Consensus       163 ~~~~~gt~~y~aP  175 (332)
T cd05614         163 TYSFCGTIEYMAP  175 (332)
T ss_pred             cccccCCccccCH
Confidence            3457899999998

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.96  E-value=1.6e-10  Score=124.93  Aligned_cols=117  Identities=16%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++||||++..+.|.           ..+    .++.+|++|. .++..++.  +........+...+..++.|++.
T Consensus       118 ~l~~l~Hpniv~~~~~~~-----------~~~----~~~lv~E~~~gg~L~~~l~--~~~~~~~~l~~~~~~~i~~qi~~  180 (478)
T PTZ00267        118 CLAACDHFGIVKHFDDFK-----------SDD----KLLLIMEYGSGGDLNKQIK--QRLKEHLPFQEYEVGLLFYQIVL  180 (478)
T ss_pred             HHHhCCCCCEeEEEEEEE-----------ECC----EEEEEEECCCCCCHHHHHH--HHHhccCCCCHHHHHHHHHHHHH
Confidence            688899999998776651           222    2789999997 46655543  22223344677888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      +|.+ |..+|+|||||     |+||++.. .+.+|++|||+++....    .....++||..|+||
T Consensus       181 aL~~lH~~~ivHrDlk-----p~NIll~~-~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aP  240 (478)
T PTZ00267        181 ALDEVHSRKMMHRDLK-----SANIFLMP-TGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAP  240 (478)
T ss_pred             HHHHHHhCCEEECCcC-----HHhEEECC-CCcEEEEeCcCceecCCccccccccccCCCccccCH
Confidence            9999 99999999999     99999975 58899999999874221    123467899999998

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.96  E-value=4.1e-10  Score=115.56  Aligned_cols=152  Identities=24%  Similarity=0.258  Sum_probs=107.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|.++.++.+|.       .+|+|.+............ .+|  ++..++|+||++..+.|.           ......
T Consensus        19 g~v~~~~~~~~~~-------~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----------~~~~~~   80 (334)
T cd07855          19 GVVCSAIDTRSGK-------KVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILR-----------PPGADF   80 (334)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhcc-----------ccCCCC
Confidence            4577777777787       7888887654332222222 333  688889999997655441           111111


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.+++++.+++..++      ..+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|+
T Consensus        81 ~~~~lv~e~~~~~l~~~~------~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-----p~Nil~~~-~~~~kl  148 (334)
T cd07855          81 KDVYVVMDLMESDLHHII------HSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLK-----PSNLLVNE-DCELRI  148 (334)
T ss_pred             ceEEEEEehhhhhHHHHh------ccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEEcC-CCcEEe
Confidence            236788899876544443      233347888999999999999999 99999999999     99999875 588999


Q ss_pred             ecCCCCCCCC------CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~------~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...      ....+.++++.+|+||
T Consensus       149 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~P  180 (334)
T cd07855         149 GDFGMARGLSSSPTEHKYFMTEYVATRWYRAP  180 (334)
T ss_pred             cccccceeecccCcCCCcccccccccccccCh
Confidence            9999986321      1223456899999998

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.96  E-value=4.5e-10  Score=113.71  Aligned_cols=151  Identities=23%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.........+.. .+|  +++.++|+|+++..+.|.          ..   ..
T Consensus        21 ~~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----------~~---~~   80 (309)
T cd07845          21 GIVYRARDTTSGE-------IVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVV----------GK---HL   80 (309)
T ss_pred             EEEEEEEECCCCc-------EEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEe----------cC---CC
Confidence            6788888888887       8899887543333333322 344  688899999997666551          11   11


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.+++++..++..++...     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        81 ~~~~lv~e~~~~~l~~~l~~~-----~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~nil~~~-~~~~kL  149 (309)
T cd07845          81 DSIFLVMEYCEQDLASLLDNM-----PTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLK-----VSNLLLTD-KGCLKI  149 (309)
T ss_pred             CeEEEEEecCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEECC-CCCEEE
Confidence            126788999887766665421     1346778899999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ....+..+++.+|+||
T Consensus       150 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  177 (309)
T cd07845         150 ADFGLARTYGLPAKPMTPKVVTLWYRAP  177 (309)
T ss_pred             CccceeeecCCccCCCCcccccccccCh
Confidence            9999987322  2334555668889887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0690|consensus

Probab=98.95  E-value=2.3e-10  Score=113.44  Aligned_cols=148  Identities=17%  Similarity=0.158  Sum_probs=111.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +-|.=|+.+++|.       --|+|.+++..  +...+...+.|  +|+..+||.++.++..|           +.+.  
T Consensus       182 GKVIL~rEKat~k-------~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsF-----------Qt~d--  241 (516)
T KOG0690|consen  182 GKVILCREKATGK-------LYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSF-----------QTQD--  241 (516)
T ss_pred             ceEEEEeecccCc-------eeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhh-----------ccCc--
Confidence            6677888999998       66888887643  33444444544  78888998888776666           2222  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -|+-+|++... ++..-+.-.+      -+.+...+.|-..++.+|+| |+++|+-||+|     .+|++++++ |.+
T Consensus       242 --rlCFVMeyanGGeLf~HLsrer------~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlK-----LENLlLDkD-GHI  307 (516)
T KOG0690|consen  242 --RLCFVMEYANGGELFFHLSRER------VFSEDRTRFYGAEIVSALGYLHSRNIVYRDLK-----LENLLLDKD-GHI  307 (516)
T ss_pred             --eEEEEEEEccCceEeeehhhhh------cccchhhhhhhHHHHHHhhhhhhCCeeeeech-----hhhheeccC-Cce
Confidence              27889998764 3322122122      34556777888999999999 99999999999     999999876 999


Q ss_pred             EEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||++..  ..+..+.++|||+-|.||
T Consensus       308 KitDFGLCKE~I~~g~t~kTFCGTPEYLAP  337 (516)
T KOG0690|consen  308 KITDFGLCKEEIKYGDTTKTFCGTPEYLAP  337 (516)
T ss_pred             EeeecccchhcccccceeccccCChhhcCc
Confidence            9999999984  346678899999999998

>KOG0576|consensus

Probab=98.95  E-value=2.1e-10  Score=122.66  Aligned_cols=147  Identities=19%  Similarity=0.248  Sum_probs=113.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|.|++++.+|.       -+|+|.|+..  +...-+.+ +|  ++++.+|+||+.+..          .|...+    
T Consensus        29 gdvyKaRd~~s~e-------laavkvVkLe--p~dd~~~iqqei~~~~dc~h~nivay~g----------sylr~d----   85 (829)
T KOG0576|consen   29 GDVYKARDKRSGE-------LAAVKVVKLE--PGDDFSGIQQEIGMLRDCRHPNIVAYFG----------SYLRRD----   85 (829)
T ss_pred             cchhhhcccccCc-------hhhheeeecc--CCccccccccceeeeecCCCcChHHHHh----------hhhhhc----
Confidence            6788999999998       8999998642  22222333 33  578899999985432          233221    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       -+..+|+++..+.     ||++|+--....+.++...++..|+++.| |+.+=+|||||     -.||++.. .|.+|+
T Consensus        86 -klwicMEycgggs-----lQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiK-----Ganilltd-~gDvkl  153 (829)
T KOG0576|consen   86 -KLWICMEYCGGGS-----LQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIK-----GANILLTD-EGDVKL  153 (829)
T ss_pred             -CcEEEEEecCCCc-----ccceeeecccchhHHHHHHHhhhhccchhhhcCCccccccc-----ccceeecc-cCceee
Confidence             1889999999876     89999888888888898889999999999 99999999999     99999975 599999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||.+-...  -..-..++||+++|||
T Consensus       154 aDfgvsaqitati~KrksfiGtpywmap  181 (829)
T KOG0576|consen  154 ADFGVSAQITATIAKRKSFIGTPYWMAP  181 (829)
T ss_pred             cccCchhhhhhhhhhhhcccCCccccch
Confidence            9999864221  1123478999999998

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.95  E-value=3.6e-10  Score=116.11  Aligned_cols=152  Identities=22%  Similarity=0.232  Sum_probs=103.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.............+|  +++.++|+||+...+.+.          .....+..
T Consensus        19 g~vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~----------~~~~~~~~   81 (336)
T cd07849          19 GMVCSATHKPTGV-------KVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIR----------PPSFESFN   81 (336)
T ss_pred             eEEEEEEEcCCCC-------eEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheee----------cccccccc
Confidence            5677777777777       7888877532111111112334  688889999996544320          00001112


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.++++|..++..++.      . ...+...++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|++
T Consensus        82 ~~~lv~e~~~~~l~~~~~------~-~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlk-----p~Nill~~-~~~~kl~  148 (336)
T cd07849          82 DVYIVQELMETDLYKLIK------T-QHLSNDHIQYFLYQILRGLKYIHSANVLHRDLK-----PSNLLLNT-NCDLKIC  148 (336)
T ss_pred             eEEEEehhcccCHHHHHh------c-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----HHHEEECC-CCCEEEC
Confidence            367888888876554443      1 236778899999999999999 99999999999     99999975 5889999


Q ss_pred             cCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        488 DFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      |||+++...     ......+++|.+|+||
T Consensus       149 dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  178 (336)
T cd07849         149 DFGLARIADPEHDHTGFLTEYVATRWYRAP  178 (336)
T ss_pred             cccceeeccccccccCCcCCcCcCCCccCh
Confidence            999986321     1223457889999998

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.95  E-value=7.4e-10  Score=110.90  Aligned_cols=159  Identities=19%  Similarity=0.225  Sum_probs=109.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..+ +|+||++....+.          ..+..+
T Consensus        15 g~vy~~~~~~~~~-------~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~----------~~~~~~   77 (295)
T cd07837          15 GKVYKARDKNTGK-------LVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEH----------VEEKNG   77 (295)
T ss_pred             eEEEEEEECCCCc-------EEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEe----------ecCCCC
Confidence            5677777777777       7888887654433333222 344  56666 4689987665441          111112


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..-++.++++|..++..++..+... .....+...+..++.|++.+|.+ |..+|+|+||+     |+||++...++.+|
T Consensus        78 ~~~~~lv~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~-----~~nil~~~~~~~~k  151 (295)
T cd07837          78 KPSLYLVFEYLDSDLKKFMDSNGRG-PGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLK-----PQNLLVDKQKGLLK  151 (295)
T ss_pred             CceEEEEeeccCcCHHHHHHHhccc-CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----hHHEEEecCCCeEE
Confidence            2236789999998888877533211 12246788999999999999999 99999999999     99999986468999


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..  +...++..+++.+|+||
T Consensus       152 l~dfg~~~~~~~~~~~~~~~~~~~~~~aP  180 (295)
T cd07837         152 IADLGLGRAFSIPVKSYTHEIVTLWYRAP  180 (295)
T ss_pred             EeecccceecCCCccccCCcccccCCCCh
Confidence            9999998732  22334445677888887

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.95  E-value=5e-10  Score=115.92  Aligned_cols=151  Identities=23%  Similarity=0.254  Sum_probs=106.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC-CC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG-NG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~-~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.+.......... .+|  +++.++|+||++..+.|.          .... .+
T Consensus        30 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~~~~   92 (353)
T cd07850          30 GIVCAAYDTVTGQ-------NVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFT----------PQKSLEE   92 (353)
T ss_pred             EEEEEEEECCCCC-------EEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeec----------cCCCccc
Confidence            5677777777777       8899887654332222122 233  678889999997766551          0000 01


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.++|++..++..++..      .  .+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|
T Consensus        93 ~~~~~lv~e~~~~~l~~~~~~------~--l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlk-----p~Nil~~~-~~~~k  158 (353)
T cd07850          93 FQDVYLVMELMDANLCQVIQM------D--LDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLK  158 (353)
T ss_pred             cCcEEEEEeccCCCHHHHHhh------c--CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----HHHEEECC-CCCEE
Confidence            123678999998766555431      1  6777888999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++... ......+.+|+.|+||
T Consensus       159 L~Dfg~~~~~~~~~~~~~~~~~~~y~aP  186 (353)
T cd07850         159 ILDFGLARTAGTSFMMTPYVVTRYYRAP  186 (353)
T ss_pred             EccCccceeCCCCCCCCCCcccccccCH
Confidence            99999987432 2223456788899988

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.94  E-value=7e-10  Score=111.10  Aligned_cols=148  Identities=21%  Similarity=0.230  Sum_probs=103.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+..... ...... .+|  +++.++|+||+...+.|+           ..    
T Consensus        19 ~~v~~~~~~~~~~-------~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~-----------~~----   75 (291)
T cd07870          19 ATVYKGISRINGQ-------LVALKVISMKTE-EGVPFTAIREASLLKGLKHANIVLLHDIIH-----------TK----   75 (291)
T ss_pred             EEEEEEEEcCCCc-------EEEEEEecccCc-CCCcHHHHHHHHHHHhcCCCCEeEEEEEEe-----------cC----
Confidence            4566666666666       788887754322 222222 334  688889999997766552           11    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -..+.+++++..++.+++.     ..........++.++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|+
T Consensus        76 ~~~~lv~e~~~~~l~~~~~-----~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk-----p~Nil~~~-~~~~~l  144 (291)
T cd07870          76 ETLTFVFEYMHTDLAQYMI-----QHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLK-----PQNLLISY-LGELKL  144 (291)
T ss_pred             CeEEEEEecccCCHHHHHH-----hCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----hHHEEEcC-CCcEEE
Confidence            1367889999877655542     222335667788899999999999 99999999999     99999964 588999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  +.......+++..|+||
T Consensus       145 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (291)
T cd07870         145 ADFGLARAKSIPSQTYSSEVVTLWYRPP  172 (291)
T ss_pred             eccccccccCCCCCCCCCccccccccCC
Confidence            999998732  22223345678888887

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=98.94  E-value=2.1e-10  Score=117.75  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=101.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCch---HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPS---SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~---~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++..+.++.       ..|+|.+.+... ......   ....++...+|+||+.....|           ...+  
T Consensus        15 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----------~~~~--   74 (332)
T cd05623          15 GEVAVVKLKNADK-------VFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAF-----------QDEN--   74 (332)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEE-----------ecCC--
Confidence            5666666666665       677776643211 011111   122367778899998665544           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++. .++..++.-     .+...+...++.++.|++.++.+ |..+|+|||||     |+||++.. ++.+
T Consensus        75 --~~~lv~ey~~~g~L~~~l~~-----~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlk-----p~Nili~~-~~~~  141 (332)
T cd05623          75 --NLYLVMDYYVGGDLLTLLSK-----FEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIK-----PDNILMDM-NGHI  141 (332)
T ss_pred             --EEEEEEeccCCCcHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----HHHEEECC-CCCE
Confidence              2789999986 566555532     12346777888999999999999 99999999999     99999974 5889


Q ss_pred             EEecCCCCCCC-C-CC-CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-H-EN-EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~-~~-~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. . .. .....+||+.|+||
T Consensus       142 kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (332)
T cd05623         142 RLADFGSCLKLMEDGTVQSSVAVGTPDYISP  172 (332)
T ss_pred             EEeecchheecccCCcceecccccCccccCH
Confidence            99999998632 1 11 22346899999998

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0605|consensus

Probab=98.94  E-value=3.4e-10  Score=118.80  Aligned_cols=129  Identities=18%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhh--cCCCCCchH--HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFA--LIPTTVPSS--VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~--~~~~~i~~~--~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |+|.=|.++.||.       .-|+|.+++.  +...++..-  -|.||....++.||++.-.|          .+. .+ 
T Consensus       155 GeVrLarKk~Tg~-------iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsF----------QD~-~~-  215 (550)
T KOG0605|consen  155 GEVRLARKKDTGE-------IYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSF----------QDK-EY-  215 (550)
T ss_pred             eeEEEEEEccCCc-------EEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEe----------cCC-Ce-
Confidence            7788888888888       8899998765  233333332  23478778899999877666          232 23 


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         |+.+|+++. +|...++.-      +..+++...+.|+.+++.|++. |..|++|||||     |+|++++. +|++
T Consensus       216 ---LYLiMEylPGGD~mTLL~~------~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIK-----PdNlLiD~-~GHi  280 (550)
T KOG0605|consen  216 ---LYLIMEYLPGGDMMTLLMR------KDTLTEDWARFYIAETVLAIESIHQLGYIHRDIK-----PDNLLIDA-KGHI  280 (550)
T ss_pred             ---eEEEEEecCCccHHHHHHh------cCcCchHHHHHHHHHHHHHHHHHHHcCcccccCC-----hhheeecC-CCCE
Confidence               999999998 565555433      3447778999999999999999 99999999999     99999986 5999


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |+.||||+.
T Consensus       281 KLSDFGLs~  289 (550)
T KOG0605|consen  281 KLSDFGLST  289 (550)
T ss_pred             eeccccccc
Confidence            999999963

>KOG0596|consensus

Probab=98.94  E-value=5.7e-10  Score=117.33  Aligned_cols=134  Identities=17%  Similarity=0.105  Sum_probs=94.9

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~  426 (512)
                      .+|+|++...-.+...-.. ..|  +|..++ |.+|+++.+.=           -.++.    |+++|++-+.|+..+++
T Consensus       387 iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYE-----------v~d~~----lYmvmE~Gd~DL~kiL~  451 (677)
T KOG0596|consen  387 IYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYE-----------VTDGY----LYMVMECGDIDLNKILK  451 (677)
T ss_pred             chhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeee-----------ccCce----EEEEeecccccHHHHHH
Confidence            6788887654333322233 444  577765 66777654321           01223    89999998888766654


Q ss_pred             hHHhhhhccCCCh-HHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC----c
Q psy17422        427 LQQLYRDQAGRDA-DVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE----I  500 (512)
Q Consensus       427 L~~iy~~ka~~d~-~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~----~  500 (512)
                            ++...+. ..++.|.+|+|.++++ |..+|+|.|+|     |+|.+++  +|.+|++|||.|...+...    -
T Consensus       452 ------k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLK-----PANFLlV--kG~LKLIDFGIA~aI~~DTTsI~k  518 (677)
T KOG0596|consen  452 ------KKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLK-----PANFLLV--KGRLKLIDFGIANAIQPDTTSIVK  518 (677)
T ss_pred             ------hccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCC-----cccEEEE--eeeEEeeeechhcccCccccceee
Confidence                  3333333 5888999999999999 99999999999     9999998  4789999999987443222    1


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      -..|||.-||+|
T Consensus       519 dsQvGT~NYMsP  530 (677)
T KOG0596|consen  519 DSQVGTVNYMSP  530 (677)
T ss_pred             ccccCcccccCH
Confidence            357999999998

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.93  E-value=7.2e-10  Score=111.19  Aligned_cols=151  Identities=20%  Similarity=0.243  Sum_probs=106.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++|+|+++..+.|.           ..    
T Consensus        16 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~----   73 (294)
T PLN00009         16 GVVYKARDRVTNE-------TIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVH-----------SE----   73 (294)
T ss_pred             EEEEEEEecCCCc-------EEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEe-----------cC----
Confidence            4566666666676       7888887654333333333 233  678889999997666551           11    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ...+.++++|..++..++...    .....+...+..++.|++.++.+ |.++|+|+||+     |+||++....+.+|+
T Consensus        74 ~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~-----p~nill~~~~~~~kl  144 (294)
T PLN00009         74 KRLYLVFEYLDLDLKKHMDSS----PDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLK-----PQNLLIDRRTNALKL  144 (294)
T ss_pred             CeEEEEEecccccHHHHHHhC----CCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----cceEEEECCCCEEEE
Confidence            127788999976665554321    11224677888999999999999 99999999999     999999765567999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  .....+.++++.+|+||
T Consensus       145 ~dfg~~~~~~~~~~~~~~~~~~~~y~~P  172 (294)
T PLN00009        145 ADFGLARAFGIPVRTFTHEVVTLWYRAP  172 (294)
T ss_pred             cccccccccCCCccccccCceeecccCH
Confidence            999998732  22334567888999987

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.92  E-value=6.8e-10  Score=110.39  Aligned_cols=149  Identities=19%  Similarity=0.244  Sum_probs=107.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.....+...+.. .+|  +++.++|+|++...+.|          .. .    
T Consensus        14 ~~v~~~~~~~~~~-------~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~----------~~-~----   71 (286)
T cd07832          14 GIVFKAKDRETGE-------TVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVF----------PH-G----   71 (286)
T ss_pred             cEEEEEEECCCCc-------eEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEE----------ec-C----
Confidence            5667777766666       7888887654332333333 334  67888999999766554          11 1    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.+++++..++.+++....     ...+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+++
T Consensus        72 ~~~~~v~e~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~ni~~~~-~~~~~l  140 (286)
T cd07832          72 SGFVLVMEYMPSDLSEVLRDEE-----RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLK-----PANLLISA-DGVLKI  140 (286)
T ss_pred             CeeEEEecccCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcC-----HHHEEEcC-CCcEEE
Confidence            1278899999777766654221     346788899999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      +|||+++....   ...+..+++.+|+||
T Consensus       141 ~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  169 (286)
T cd07832         141 ADFGLARLFSEEEPRLYSHQVATRWYRAP  169 (286)
T ss_pred             eeeeecccccCCCCCccccccCcccccCc
Confidence            99999874321   234556788999998

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0984|consensus

Probab=98.92  E-value=1.8e-10  Score=107.92  Aligned_cols=152  Identities=21%  Similarity=0.284  Sum_probs=98.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|++.++..+|.       .-|+|++.....+..-...+.+   +++...||.+|    .||-     +.|.  ++.  
T Consensus        60 G~vekmrh~~sg~-------imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V----~FyG-----a~~r--egd--  119 (282)
T KOG0984|consen   60 GVVEKMRHIQSGT-------IMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTV----HFYG-----ALFR--EGD--  119 (282)
T ss_pred             chhhheeeccCCe-------EEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEE----Eeeh-----hhhc--ccc--
Confidence            4567777777787       7788888754331111111222   23344566666    4542     2233  222  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        +...|+.|..++..+-  .+++.......+..+-+++..+++++.+ |+ ..|+|||+|     |+||+++.. |.+|
T Consensus       120 --vwIcME~M~tSldkfy--~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvK-----PsNiLIn~~-GqVK  189 (282)
T KOG0984|consen  120 --VWICMELMDTSLDKFY--RKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVK-----PSNILINYD-GQVK  189 (282)
T ss_pred             --EEEeHHHhhhhHHHHH--HHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCC-----cceEEEccC-CcEE
Confidence              8899999987765554  3556555567777788888889999999 65 699999999     999999864 9999


Q ss_pred             EecCCCCCCCCCCCc-cCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEI-TPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~-t~yv~tr~YraP  512 (512)
                      +||||.+-...++.. |.-.|-..|+||
T Consensus       190 iCDFGIsG~L~dSiAkt~daGCkpYmaP  217 (282)
T KOG0984|consen  190 ICDFGISGYLVDSIAKTMDAGCKPYMAP  217 (282)
T ss_pred             EcccccceeehhhhHHHHhcCCCccCCh
Confidence            999999753322221 113344456665

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=98.91  E-value=6.4e-10  Score=111.44  Aligned_cols=150  Identities=17%  Similarity=0.079  Sum_probs=104.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCC-CchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTT-VPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~-i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.... .... .....+|  +++.++|+||+.....|.          . .   
T Consensus        14 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~-~---   72 (285)
T cd05605          14 GEVCACQVRATGK-------MYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYE----------T-K---   72 (285)
T ss_pred             eEEEEEEEcCCCc-------eEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeec----------C-C---
Confidence            5667777766666       78888775422 1111 1111233  688889999997655551          1 1   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.++++|.. ++..++..    ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        73 -~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~  141 (285)
T cd05605          73 -DALCLVLTLMNGGDLKFHIYN----MGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLK-----PENILLDD-YGHI  141 (285)
T ss_pred             -CeEEEEEeccCCCcHHHHHHh----cCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCC-----HHHEEECC-CCCE
Confidence             137899999974 44333321    112347888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +++|||+++... .......++|..|+||
T Consensus       142 ~l~Dfg~~~~~~~~~~~~~~~~~~~y~aP  170 (285)
T cd05605         142 RISDLGLAVEIPEGETIRGRVGTVGYMAP  170 (285)
T ss_pred             EEeeCCCceecCCCCccccccCCCCccCc
Confidence            999999987432 2233456788999988

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.91  E-value=5.1e-10  Score=111.26  Aligned_cols=152  Identities=18%  Similarity=0.251  Sum_probs=106.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+...........-+.+   .++..+|+|+++..+.+           ..++   
T Consensus        15 g~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~-----------~~~~---   73 (283)
T cd06617          15 GVVDKMRHVPTGT-------IMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGAL-----------FREG---   73 (283)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEE-----------ecCC---
Confidence            6788888888888       8899877543321111111222   45667899999765544           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++++|..++.++++  .....+...+...+..++.|++.++.+ |.+ +++|+|+|     |+||++.. .+.+|
T Consensus        74 -~~~lv~e~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlk-----p~nil~~~-~~~~k  144 (283)
T cd06617          74 -DVWICMEVMDTSLDKFYK--KVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVK-----PSNVLINR-NGQVK  144 (283)
T ss_pred             -cEEEEhhhhcccHHHHHH--HhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCC-----HHHEEECC-CCCEE
Confidence             277889999877666653  233334457888999999999999999 987 99999999     99999975 48899


Q ss_pred             EecCCCCCCCCCC-CccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHEN-EITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~-~~t~yv~tr~YraP  512 (512)
                      ++|||+++..... ..+...++..|+||
T Consensus       145 l~dfg~~~~~~~~~~~~~~~~~~~y~aP  172 (283)
T cd06617         145 LCDFGISGYLVDSVAKTIDAGCKPYMAP  172 (283)
T ss_pred             EeecccccccccccccccccCCccccCh
Confidence            9999998743221 22335677788887

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.90  E-value=1.1e-09  Score=109.09  Aligned_cols=150  Identities=23%  Similarity=0.263  Sum_probs=106.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++|+||++..+.|+           ..    
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----------~~----   71 (284)
T cd07860          14 GVVYKARNKLTGE-------VVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-----------TE----   71 (284)
T ss_pred             eEEEEEEECCCCC-------EEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcc-----------cC----
Confidence            5677777777777       7888877543322222222 233  688889999997666552           11    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ...+.+++++..++.+++...    .....+...+..++.|++.++.+ |..+++|+|++     |+||++.. ++.+|+
T Consensus        72 ~~~~~v~e~~~~~l~~~~~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~-----p~nill~~-~~~~~l  141 (284)
T cd07860          72 NKLYLVFEFLHQDLKKFMDAS----PLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK-----PQNLLINT-EGAIKL  141 (284)
T ss_pred             CcEEEEeeccccCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCCEEE
Confidence            137788998876665555321    12346788999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  .....+...++.+|+||
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  169 (284)
T cd07860         142 ADFGLARAFGVPVRTYTHEVVTLWYRAP  169 (284)
T ss_pred             eeccchhhcccCccccccccccccccCC
Confidence            999998632  22234445667888887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=98.90  E-value=1.2e-09  Score=108.74  Aligned_cols=149  Identities=25%  Similarity=0.268  Sum_probs=104.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++|+||++..+.|          . ..+   
T Consensus        15 ~~vy~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~-~~~---   73 (286)
T cd07846          15 GMVMKCKHKETGQ-------IVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVF----------R-RKK---   73 (286)
T ss_pred             eEEEEEEECCCCC-------EEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhc----------c-cCC---
Confidence            4566777766676       7888876554332222222 233  67888999998544433          1 111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       ..+.++++|...+-     ..........+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+++
T Consensus        74 -~~~lv~e~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~-----p~ni~~~~-~~~~~l  141 (286)
T cd07846          74 -RLYLVFEFVDHTVL-----DDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIK-----PENILVSQ-SGVVKL  141 (286)
T ss_pred             -eEEEEEecCCccHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEECC-CCcEEE
Confidence             26788999875432     2222223347888999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  .....+.++++.+|+||
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  169 (286)
T cd07846         142 CDFGFARTLAAPGEVYTDYVATRWYRAP  169 (286)
T ss_pred             EeeeeeeeccCCccccCcccceeeccCc
Confidence            999998732  23345668899999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0983|consensus

Probab=98.89  E-value=1.3e-10  Score=112.98  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=97.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|++++.+.+|.       .-|+|++.+.-.......-+..   ++..-.||.||+--..|          +-+ ..  
T Consensus       106 G~V~k~~~rs~~~-------iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyF----------i~n-~d--  165 (391)
T KOG0983|consen  106 GQVWKMRFRSTGH-------IIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYF----------ITN-TD--  165 (391)
T ss_pred             cceEEEEEcccce-------EEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEE----------eeC-ch--
Confidence            6789999999998       8899998774322211111122   33334577777654444          211 11  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC--CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ--PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~--h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        +...|+.|..-.+.++  +.++   ....+..+-.+...++++|.|  ..++|+|||||     |+||+++ .+|.+|
T Consensus       166 --V~IcMelMs~C~ekLl--krik---~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvK-----PSNILlD-e~GniK  232 (391)
T KOG0983|consen  166 --VFICMELMSTCAEKLL--KRIK---GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVK-----PSNILLD-ERGNIK  232 (391)
T ss_pred             --HHHHHHHHHHHHHHHH--HHhc---CCchHHhhhhhHHHHHHHHHHHHHhcceeecccC-----ccceEEc-cCCCEE
Confidence              5556666754333332  2332   235666666677888999988  67899999999     9999997 469999


Q ss_pred             EecCCCCC-CCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSAS-WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar-~~~~~~~t~yv~tr~YraP  512 (512)
                      +||||.+- .......+-..|-.+||||
T Consensus       233 lCDFGIsGrlvdSkAhtrsAGC~~YMaP  260 (391)
T KOG0983|consen  233 LCDFGISGRLVDSKAHTRSAGCAAYMAP  260 (391)
T ss_pred             eecccccceeecccccccccCCccccCc
Confidence            99999964 3333344556677788887

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.89  E-value=1.1e-09  Score=108.68  Aligned_cols=150  Identities=23%  Similarity=0.273  Sum_probs=105.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+.............+|  ++..+ +|+|++...+.|+          +.+ .+ 
T Consensus        13 ~~v~~~~~~~~~~-------~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~----------~~~-~~-   73 (282)
T cd07831          13 SEVLKAQSRKTGK-------YYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLF----------DRK-TG-   73 (282)
T ss_pred             ceEEEEEEcCCCc-------EEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEe----------cCC-CC-
Confidence            5567777766666       7788877654432222222344  34555 4999997666552          111 11 


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.+++++..++..++.-     .+...+...+..++.|++.++.+ |..+|+|+|++     |.||++..  +.+|+
T Consensus        74 -~~~lv~e~~~~~l~~~l~~-----~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~-----p~ni~l~~--~~~kl  140 (282)
T cd07831          74 -RLALVFELMDMNLYELIKG-----RKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIK-----PENILIKD--DILKL  140 (282)
T ss_pred             -cEEEEEecCCccHHHHHHh-----ccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccC-----HHHEEEcC--CCeEE
Confidence             2678899998766554421     12346888999999999999999 99999999999     99999975  88999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.. .....+.++++.+|+||
T Consensus       141 ~dfg~~~~~~~~~~~~~~~~~~~y~aP  167 (282)
T cd07831         141 ADFGSCRGIYSKPPYTEYISTRWYRAP  167 (282)
T ss_pred             EecccccccccCCCcCCCCCCcccCCh
Confidence            999998743 23334567789999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.88  E-value=1.2e-09  Score=119.04  Aligned_cols=118  Identities=15%  Similarity=0.047  Sum_probs=85.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQ  452 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~  452 (512)
                      +|..++|+||+...+.|           .....    .+.+++.+..++..++.-... ..+.......++.++.|++.+
T Consensus       216 il~~l~HpnIv~l~~~~-----------~~~~~----~~lv~e~~~~~l~~~l~~~~~-~~~~~~~~~~~~~i~~ql~~a  279 (501)
T PHA03210        216 ALGRLNHENILKIEEIL-----------RSEAN----TYMITQKYDFDLYSFMYDEAF-DWKDRPLLKQTRAIMKQLLCA  279 (501)
T ss_pred             HHHhCCCCCcCcEeEEE-----------EECCe----eEEEEeccccCHHHHHhhccc-cccccccHHHHHHHHHHHHHH
Confidence            68889999999766554           12111    567777777776666532211 111123355677899999999


Q ss_pred             hCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        453 LGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       453 l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      |.| |..+|+|||||     |+||++.. .+.+|++|||+++....   .....++||..|+||
T Consensus       280 L~yLH~~gIiHrDLK-----P~NILl~~-~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aP  337 (501)
T PHA03210        280 VEYIHDKKLIHRDIK-----LENIFLNC-DGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSP  337 (501)
T ss_pred             HHHHHhCCeecCCCC-----HHHEEECC-CCCEEEEeCCCceecCcccccccccccCCcCCCCc
Confidence            999 99999999999     99999975 48899999999974321   122356899999998

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.88  E-value=1.2e-09  Score=112.35  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=108.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+....... ......+|  +++.++|+||++..+.|.          .......
T Consensus        19 ~~vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~----------~~~~~~~   81 (337)
T cd07858          19 GIVCSAKNSETNE-------KVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMP----------PPHREAF   81 (337)
T ss_pred             eEEEEEEecCCCC-------eEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHhee----------ccccccc
Confidence            5677777777777       88999876543222 11122334  678889999997655441          0000111


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .-++.+++++..++..++.      .....+...+..++.|++.++.+ |.++++|+|+|     |+||++.. ++.+|+
T Consensus        82 ~~~~lv~e~~~~~L~~~~~------~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlk-----p~Nil~~~-~~~~kL  149 (337)
T cd07858          82 NDVYIVYELMDTDLHQIIR------SSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLK-----PSNLLLNA-NCDLKI  149 (337)
T ss_pred             CcEEEEEeCCCCCHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEEcC-CCCEEE
Confidence            1267889998776544443      33457888999999999999999 99999999999     99999965 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ......++++.+|+||
T Consensus       150 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  177 (337)
T cd07858         150 CDFGLARTTSEKGDFMTEYVVTRWYRAP  177 (337)
T ss_pred             CcCccccccCCCcccccccccccCccCh
Confidence            9999987432  2335567889999998

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=98.88  E-value=4.4e-10  Score=113.49  Aligned_cols=141  Identities=17%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++|+||++....|          .+ .    -+++.++++|. .++..++..
T Consensus        48 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~----------~~-~----~~~~lv~e~~~~~~L~~~l~~  112 (304)
T cd05096          48 LVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVC----------VD-E----DPLCMITEYMENGDLNQFLSS  112 (304)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEE----------ec-C----CceEEEEecCCCCcHHHHHHh
Confidence            5777766432111111111233  67888999999765544          11 1    23788999986 577777654


Q ss_pred             HHhhhhc-------------cCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        428 QQLYRDQ-------------AGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       428 ~~iy~~k-------------a~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      .......             .......+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlk-----p~Nill~~-~~~~kl~DfG~~~  186 (304)
T cd05096         113 HHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLA-----TRNCLVGE-NLTIKIADFGMSR  186 (304)
T ss_pred             ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcc-----hhheEEcC-CccEEECCCccce
Confidence            3321111             124556788899999999999 99999999999     99999975 4889999999987


Q ss_pred             CCCC-C---CccCeeeeeeeccC
Q psy17422        494 WSHE-N---EITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~~~~-~---~~t~yv~tr~YraP  512 (512)
                      .... .   ......++..|+||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~y~aP  209 (304)
T cd05096         187 NLYAGDYYRIQGRAVLPIRWMAW  209 (304)
T ss_pred             ecccCceeEecCcCCCCccccCH
Confidence            3211 1   11233446678877

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.88  E-value=9.8e-10  Score=109.26  Aligned_cols=151  Identities=21%  Similarity=0.272  Sum_probs=107.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.............+|  +++.++|+|++...+.|          .. .+    
T Consensus        14 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~----------~~-~~----   71 (284)
T cd07836          14 ATVYKGRNRTTGE-------IVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI----------HT-EN----   71 (284)
T ss_pred             eEEEEEEECCCCe-------EEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeE----------ee-CC----
Confidence            5677777777777       7888877543222222222344  67888999999766554          11 11    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.+++++..++..++.-..   .+...+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.++++
T Consensus        72 ~~~lv~e~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~-----p~ni~~~~-~~~~~l~  142 (284)
T cd07836          72 KLMLVFEYMDKDLKKYMDTHG---VRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLK-----PQNLLINK-RGELKLA  142 (284)
T ss_pred             cEEEEEecCCccHHHHHHhcC---CCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----HHHEEECC-CCcEEEe
Confidence            267899999877666654221   12346888899999999999999 99999999999     99999864 5889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  ........++|.+|+||
T Consensus       143 d~g~~~~~~~~~~~~~~~~~~~~y~~P  169 (284)
T cd07836         143 DFGLARAFGIPVNTFSNEVVTLWYRAP  169 (284)
T ss_pred             ecchhhhhcCCccccccccccccccCh
Confidence            99998732  22233456778888887

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=98.88  E-value=5.8e-10  Score=111.29  Aligned_cols=151  Identities=23%  Similarity=0.274  Sum_probs=103.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+.....+.....-.+|  +++.++|+||++..+.|.           .++    
T Consensus        15 g~v~~~~~~~~~~-------~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----------~~~----   72 (286)
T cd06622          15 GSVYKVLHRPTGV-------TMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFF-----------IEG----   72 (286)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhhee-----------cCC----
Confidence            5677777777777       7788876543222222222333  678889999986555441           111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .++.+++++.. ++..++...   ......+...+..++.+++.++.+ |. .+|+|+|||     |+||++.. ++.+|
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~-----p~nil~~~-~~~~~  143 (286)
T cd06622          73 AVYMCMEYMDAGSLDKLYAGG---VATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVK-----PTNVLVNG-NGQVK  143 (286)
T ss_pred             eEEEEEeecCCCCHHHHHHhc---cccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCC-----HHHEEECC-CCCEE
Confidence            26788999875 444444321   012357888999999999999999 86 599999999     99999976 58899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..........+++..|+||
T Consensus       144 l~dfg~~~~~~~~~~~~~~~~~~y~aP  170 (286)
T cd06622         144 LCDFGVSGNLVASLAKTNIGCQSYMAP  170 (286)
T ss_pred             EeecCCcccccCCccccCCCccCccCc
Confidence            999999874333333345677778887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG1006|consensus

Probab=98.88  E-value=9.2e-11  Score=113.56  Aligned_cols=151  Identities=20%  Similarity=0.271  Sum_probs=98.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |+|-|..++..|.       .-|+|+++.-.. .+-... +.|   +++..+|||||+    ||-.     -|.  |+. 
T Consensus        78 G~V~KM~hk~sg~-------~mAVKrIr~~n~-~keq~rll~e~d~~mks~~cp~IVk----fyGa-----~F~--EGd-  137 (361)
T KOG1006|consen   78 GTVNKMLHKPSGK-------LMAVKRIRSNNI-EKEQKRLLMEHDTVMKSSNCPNIVK----FYGA-----LFS--EGD-  137 (361)
T ss_pred             hhhhhhhcCccCc-------EEEEEEeeeccc-hHHHHHHHHHHHHHHhhcCCcHHHH----Hhhh-----hhc--CCc-
Confidence            8899999999998       889999864321 111111 222   577778999994    4321     133  333 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhh-hccCCChHHHHHHHHHHHHHhCC--CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYR-DQAGRDADVIYRRAQQLLHQLGQ--PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~-~ka~~d~~~v~~~~~qlL~~l~~--h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         ....|+.|..+...+-  +.+|. .+....+..+-.+.-..+.+|.|  ....|+|||||     |+||++++ +|.
T Consensus       138 ---cWiCMELMd~SlDklY--k~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvK-----PSNILldr-~G~  206 (361)
T KOG1006|consen  138 ---CWICMELMDISLDKLY--KRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVK-----PSNILLDR-HGD  206 (361)
T ss_pred             ---eeeeHHHHhhhHHHHH--HHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCC-----hhheEEec-CCC
Confidence               6788899986654443  23342 23445555555555556677777  55789999999     99999986 599


Q ss_pred             EEEecCCCCCCCCCC-CccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHEN-EITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~-~~t~yv~tr~YraP  512 (512)
                      +|+||||.+-...++ .-|.-+|-|.|+||
T Consensus       207 vKLCDFGIcGqLv~SiAkT~daGCrpYmAP  236 (361)
T KOG1006|consen  207 VKLCDFGICGQLVDSIAKTVDAGCRPYMAP  236 (361)
T ss_pred             EeeecccchHhHHHHHHhhhccCCccccCh
Confidence            999999987532222 23445677888887

>PTZ00284 protein kinase; Provisional

Probab=98.88  E-value=4.3e-10  Score=121.23  Aligned_cols=152  Identities=14%  Similarity=0.154  Sum_probs=97.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HH--HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VA--SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~--ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+....   ..... ..  ++++.++|.++......    + .+..|...+..  
T Consensus       143 g~V~~a~~~~~~~-------~vAvK~i~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~i----~-~i~~~~~~~~~--  205 (467)
T PTZ00284        143 GKVVEAWDRKRKE-------YCAVKIVRNVP---KYTRDAKIEIQFMEKVRQADPADRFPL----M-KIQRYFQNETG--  205 (467)
T ss_pred             EEEEEEEEcCCCe-------EEEEEEEecch---hhHHHHHHHHHHHHHHhhcCcccCcce----e-eeEEEEEcCCc--
Confidence            6777877777776       88999875321   11111 11  24555555443321100    0 01111122111  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCC----
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESK----  481 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~----  481 (512)
                       -++.+++++..++..++.      .+...+...+..++.|++.+|.| |. .+|+|||||     |+||++....    
T Consensus       206 -~~~iv~~~~g~~l~~~l~------~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlK-----P~NILl~~~~~~~~  273 (467)
T PTZ00284        206 -HMCIVMPKYGPCLLDWIM------KHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLK-----PENILMETSDTVVD  273 (467)
T ss_pred             -eEEEEEeccCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCC-----HHHEEEecCCcccc
Confidence             266788888766655443      23357788899999999999999 97 599999999     9999996532    


Q ss_pred             -----------CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        482 -----------LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 -----------~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                                 +.+|++|||.+.... ...+.+++|++|+||
T Consensus       274 ~~~~~~~~~~~~~vkl~DfG~~~~~~-~~~~~~~gt~~Y~AP  314 (467)
T PTZ00284        274 PVTNRALPPDPCRVRICDLGGCCDER-HSRTAIVSTRHYRSP  314 (467)
T ss_pred             cccccccCCCCceEEECCCCccccCc-cccccccCCccccCc
Confidence                       248999999876432 224568999999998

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.88  E-value=1.6e-09  Score=107.81  Aligned_cols=149  Identities=26%  Similarity=0.310  Sum_probs=107.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.++.       .+|+|.+............ .+|  +++.++|+||++..+.|.           ..    
T Consensus        15 ~~v~~~~~~~~~~-------~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----------~~----   72 (288)
T cd07833          15 GVVLKCRNKATGE-------IVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFR-----------RK----   72 (288)
T ss_pred             eeEEEEEeCCCCc-------EEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEE-----------EC----
Confidence            4566666666666       8899987654433333333 333  678888999987665551           11    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.+++++..++....     .+.....+...+..++.|++.++.+ |.++|+|+|++     |+||.+.. ++.+|+
T Consensus        73 ~~~~iv~e~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~-----~~ni~~~~-~~~~kl  141 (288)
T cd07833          73 GRLYLVFEYVERTLLELL-----EASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIK-----PENILVSE-SGVLKL  141 (288)
T ss_pred             CEEEEEEecCCCCHHHHH-----HhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEECC-CCCEEE
Confidence            127788999986543322     1223347888999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      +|||++....   ....+.++++.+|+||
T Consensus       142 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~P  170 (288)
T cd07833         142 CDFGFARALRARPASPLTDYVATRWYRAP  170 (288)
T ss_pred             EeeecccccCCCccccccCcccccCCcCC
Confidence            9999987432   1245678899999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.87  E-value=2.6e-09  Score=110.21  Aligned_cols=150  Identities=25%  Similarity=0.312  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC-CCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE-GNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~-~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.+.......... .+|  +++.++|+||+...+.|.          ... ...
T Consensus        29 g~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~----------~~~~~~~   91 (342)
T cd07879          29 GSVCSAIDKRTGE-------KVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFT----------SAVSGDE   91 (342)
T ss_pred             eEEEEEEeCCCCc-------EEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheec----------ccccCCC
Confidence            5677777766776       7899887654433332222 333  688889999997665541          000 011


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ....+.+++++..++..+.      .  .......+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|
T Consensus        92 ~~~~~lv~e~~~~~l~~~~------~--~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlk-----p~NIll~~-~~~~k  157 (342)
T cd07879          92 FQDFYLVMPYMQTDLQKIM------G--HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLK-----PGNLAVNE-DCELK  157 (342)
T ss_pred             CceEEEEecccccCHHHHH------c--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCEE
Confidence            1225678888865443322      1  236778899999999999999 99999999999     99999975 58999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.... ....+++|.+|+||
T Consensus       158 L~dfg~~~~~~~-~~~~~~~~~~y~aP  183 (342)
T cd07879         158 ILDFGLARHADA-EMTGYVVTRWYRAP  183 (342)
T ss_pred             EeeCCCCcCCCC-CCCCceeeecccCh
Confidence            999999875432 24567889999998

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=98.87  E-value=1.3e-09  Score=108.47  Aligned_cols=149  Identities=23%  Similarity=0.265  Sum_probs=104.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  ++..++|+|++...+.|+           ...   
T Consensus        15 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----------~~~---   73 (286)
T cd07847          15 GVVFKCRNRETGQ-------IVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFR-----------RKR---   73 (286)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEe-----------eCC---
Confidence            5667777766676       7788876433222222222 233  688889999997666552           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|...+-..     ........+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|+
T Consensus        74 -~~~~v~e~~~~~~l~~-----~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~-----p~nil~~~-~~~~~l  141 (286)
T cd07847          74 -KLHLVFEYCDHTVLNE-----LEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVK-----PENILITK-QGQIKL  141 (286)
T ss_pred             -EEEEEEeccCccHHHH-----HHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----hhhEEEcC-CCcEEE
Confidence             2678899998654322     23333347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||++....  ......+.++.+|+||
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~~~aP  169 (286)
T cd07847         142 CDFGFARILTGPGDDYTDYVATRWYRAP  169 (286)
T ss_pred             CccccceecCCCcccccCcccccccCCH
Confidence            9999987322  2234456788889887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.86  E-value=1.1e-09  Score=110.16  Aligned_cols=157  Identities=21%  Similarity=0.164  Sum_probs=107.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.+...-..   +.    ...
T Consensus        26 ~~v~~~~~~~~~~-------~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~---~~----~~~   91 (310)
T cd07865          26 GEVFKARHKKTKQ-------IVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATP---YN----RYK   91 (310)
T ss_pred             EEEEEEEECCCCc-------EEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEeccccc---cc----CCC
Confidence            5677787777777       8888887543333333222 233  67888999999766544211000   00    001


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      --.+.+++++..++..++.-     .....+...+..++.|++.++.+ |.++|+|+|||     |+||++.. .+.+|+
T Consensus        92 ~~~~lv~e~~~~~l~~~l~~-----~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~-----p~nil~~~-~~~~kl  160 (310)
T cd07865          92 GSFYLVFEFCEHDLAGLLSN-----KNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMK-----AANILITK-DGILKL  160 (310)
T ss_pred             ceEEEEEcCCCcCHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHEEECC-CCcEEE
Confidence            12577888887765555421     12246888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC------CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~------~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...      .......+++.+|+||
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aP  192 (310)
T cd07865         161 ADFGLARAFSLSKNSKPNRYTNRVVTLWYRPP  192 (310)
T ss_pred             CcCCCcccccCCcccCCCCccCcccCccccCc
Confidence            9999986321      1233456788899998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0586|consensus

Probab=98.86  E-value=1e-09  Score=116.83  Aligned_cols=135  Identities=17%  Similarity=0.210  Sum_probs=100.6

Q ss_pred             HhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      ++|||-+.+...+. ...+.-+|  +|..++||||+++....           ..+..    |+.+|++.. .++..|+.
T Consensus        83 ~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~-----------~t~~~----lylV~eya~~ge~~~yl~  147 (596)
T KOG0586|consen   83 EVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVI-----------ETEAT----LYLVMEYASGGELFDYLV  147 (596)
T ss_pred             eEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeee-----------eecce----eEEEEEeccCchhHHHHH
Confidence            89999887654322 12222344  68889999999876554           22222    889999964 56666654


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC-CCCCCccCee
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW-SHENEITPYL  504 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~-~~~~~~t~yv  504 (512)
                      -..      .......+.+..|++.++.| |.+.|+|||+|     ++||++... -.+||+|||++.. ..+...-+++
T Consensus       148 ~~g------r~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk-----~eNilL~~~-mnikIaDfgfS~~~~~~~~lqt~c  215 (596)
T KOG0586|consen  148 KHG------RMKEKEARAKFRQIVSAVEYCHSKNIVHRDLK-----AENILLDEN-MNIKIADFGFSTFFDYGLMLQTFC  215 (596)
T ss_pred             hcc------cchhhhhhhhhHHHHHHHHHHhhcceeccccc-----hhhcccccc-cceeeeccccceeecccccccccC
Confidence            332      23336777888999999999 99999999999     999999754 5699999999983 4566677899


Q ss_pred             eeeeeccC
Q psy17422        505 VSRFYRAP  512 (512)
Q Consensus       505 ~tr~YraP  512 (512)
                      |++.|.||
T Consensus       216 gsppyAaP  223 (596)
T KOG0586|consen  216 GSPPYAAP  223 (596)
T ss_pred             CCCCccCh
Confidence            99999988

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.86  E-value=7.6e-10  Score=110.45  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=102.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--CCchHH--HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--TVPSSV--ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--~i~~~~--~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.......  ......  .++++.++||||+.....|           ...   
T Consensus         7 g~Vy~~~~~~~~~-------~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~-----------~~~---   65 (277)
T cd05607           7 GEVCAVQVKNTGK-------MYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAF-----------ESK---   65 (277)
T ss_pred             eEEEEEEEccCCc-------EEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEE-----------ecC---
Confidence            5677777777787       67777765322111  111112  3378889999999765555           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       ..++.+++++.. ++..++...    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        66 -~~~~lv~e~~~g~~L~~~~~~~----~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dik-----p~Nili~~-~~~~  134 (277)
T cd05607          66 -THLCLVMSLMNGGDLKYHIYNV----GERGLEMERVIHYSAQITCGILHLHSMDIVYRDMK-----PENVLLDD-QGNC  134 (277)
T ss_pred             -CeEEEEEecCCCCCHHHHHHhc----cccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCC-----hHhEEEcC-CCCE
Confidence             137889999874 443333211    12236778888899999999999 99999999999     99999975 5789


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +++|||++.... ........+|..|+||
T Consensus       135 ~l~Dfg~~~~~~~~~~~~~~~~~~~y~aP  163 (277)
T cd05607         135 RLSDLGLAVELKDGKTITQRAGTNGYMAP  163 (277)
T ss_pred             EEeeceeeeecCCCceeeccCCCCCccCH
Confidence            999999986332 2223345678888887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=98.86  E-value=6.9e-10  Score=112.57  Aligned_cols=147  Identities=18%  Similarity=0.330  Sum_probs=103.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+...... ..... .+|  +++.++||||++..+.|+           .++.  
T Consensus        15 g~v~~~~~~~~~~-------~~a~k~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~~--   73 (308)
T cd06615          15 GVVTKVLHRPSGL-------IMARKLIHLEIKP-AIRNQIIRELKVLHECNSPYIVGFYGAFY-----------SDGE--   73 (308)
T ss_pred             eEEEEEEEcCCCe-------EEEEEEeccccCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----------eCCE--
Confidence            5566777666665       5666665432111 11111 233  688889999998776662           1112  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        ++.+++++. .++..++..      ....+...+..++.|++.++.| |. .+|+|+|+|     |.||++.. ++.+
T Consensus        74 --~~lv~ey~~~~~L~~~l~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~-----p~nil~~~-~~~~  139 (308)
T cd06615          74 --ISICMEHMDGGSLDQVLKK------AGRIPENILGKISIAVLRGLTYLREKHKIMHRDVK-----PSNILVNS-RGEI  139 (308)
T ss_pred             --EEEEeeccCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCC-----hHHEEEec-CCcE
Confidence              778999987 466666542      2346778899999999999999 97 689999999     99999975 5889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.........+++++.|+||
T Consensus       140 ~l~dfg~~~~~~~~~~~~~~~~~~~~aP  167 (308)
T cd06615         140 KLCDFGVSGQLIDSMANSFVGTRSYMSP  167 (308)
T ss_pred             EEccCCCcccccccccccCCCCcCccCh
Confidence            9999999875433334567888889887

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=98.86  E-value=1.1e-09  Score=124.90  Aligned_cols=154  Identities=12%  Similarity=0.066  Sum_probs=104.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC-CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+........ .... .+|  ++..++||||++....+           ...   
T Consensus        16 G~VYlA~d~~tg~-------~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~-----------~d~---   74 (932)
T PRK13184         16 GEVYLAYDPVCSR-------RVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSIC-----------SDG---   74 (932)
T ss_pred             EEEEEEEECCCCc-------EEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEE-----------eeC---
Confidence            6778888777777       889998865332211 1112 233  68889999999765444           111   


Q ss_pred             CcceeEEecccc-CChHHHHHhHH---hhhh--ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQ---LYRD--QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE  479 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~---iy~~--ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~  479 (512)
                       -.++.+||+|. .++..++.-..   ....  ....+...+..++.|++.++.+ |..+|+|||||     |+||++..
T Consensus        75 -~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLK-----PeNILLd~  148 (932)
T PRK13184         75 -DPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLK-----PDNILLGL  148 (932)
T ss_pred             -CEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCc-----hheEEEcC
Confidence             13788999997 46666654210   0000  1224556778889999999999 99999999999     99999975


Q ss_pred             CCCeEEEecCCCCCCCC--C------------------CCccCeeeeeeeccC
Q psy17422        480 SKLVLKLCDFGSASWSH--E------------------NEITPYLVSRFYRAP  512 (512)
Q Consensus       480 ~~~~~Kl~DfGlar~~~--~------------------~~~t~yv~tr~YraP  512 (512)
                       .+.+|++|||+++...  .                  ......+||+.|+||
T Consensus       149 -dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAP  200 (932)
T PRK13184        149 -FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAP  200 (932)
T ss_pred             -CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCH
Confidence             4889999999986320  0                  001235799999998

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=98.85  E-value=1.4e-09  Score=124.54  Aligned_cols=155  Identities=18%  Similarity=0.228  Sum_probs=106.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+.+.+..++.       .+|+|.+............ .+|  ++..++||||+.+.+.|.          ...   .
T Consensus        27 GtVYLAkdk~tg~-------~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~----------de~---~   86 (1021)
T PTZ00266         27 GEVFLVKHKRTQE-------FFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFL----------NKA---N   86 (1021)
T ss_pred             eEEEEEEECCCCe-------EEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE----------ecC---C
Confidence            5677777777766       6777766432111111111 233  688899999998766551          111   1


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-------CCChHHHHhhcccccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-------AITEAQVKLFCRNASFIHVN  478 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-------~I~hrdIK~Fc~n~~nIll~  478 (512)
                      -.++.+|+++. .++..++.  ..+......+...+..++.|++.+|.| |..       +|+|+|||     |+||++.
T Consensus        87 ~~lyIVMEY~~gGSL~~lL~--k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLK-----PeNILL~  159 (1021)
T PTZ00266         87 QKLYILMEFCDAGDLSRNIQ--KCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLK-----PQNIFLS  159 (1021)
T ss_pred             CEEEEEEeCCCCCcHHHHHH--HHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCc-----HHHeEee
Confidence            23788999997 46666654  333333457888999999999999999 874       59999999     9999985


Q ss_pred             C----------------CCCeEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        479 E----------------SKLVLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~----------------~~~~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      .                ..+.+|++|||+++... .......++|++|+||
T Consensus       160 s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAP  210 (1021)
T PTZ00266        160 TGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSP  210 (1021)
T ss_pred             cCccccccccccccccCCCCceEEccCCccccccccccccccCCCccccCH
Confidence            3                23458999999987432 2223456899999998

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.85  E-value=1.2e-09  Score=109.60  Aligned_cols=151  Identities=22%  Similarity=0.234  Sum_probs=105.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..++||||+.....+          ...+   .
T Consensus        19 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~----------~~~~---~   78 (293)
T cd07843          19 GVVYRARDKKTGE-------IVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVV----------VGSN---L   78 (293)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEE----------EecC---C
Confidence            4566666666666       6788877543322333222 233  67788999998655443          1111   1


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.++|++..++..++.-.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|+
T Consensus        79 ~~~~lv~e~~~~~L~~~~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~-----p~nili~~-~~~~~l  147 (293)
T cd07843          79 DKIYMVMEYVEHDLKSLMETM-----KQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLK-----TSNLLLNN-RGILKI  147 (293)
T ss_pred             CcEEEEehhcCcCHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----HHHEEECC-CCcEEE
Confidence            237889999987665554321     1247888999999999999999 99999999999     99999975 589999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  +........++..|+||
T Consensus       148 ~d~g~~~~~~~~~~~~~~~~~~~~~~aP  175 (293)
T cd07843         148 CDFGLAREYGSPLKPYTQLVVTLWYRAP  175 (293)
T ss_pred             eecCceeeccCCccccccccccccccCc
Confidence            999998733  22344556778889988

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.85  E-value=1.3e-09  Score=108.98  Aligned_cols=148  Identities=17%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCch--HHHH-----HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPS--SVAS-----ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~--~~~e-----ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.+..+|.       ..|+|.+........-..  ..++     ++...+|+|++.....|.           .+
T Consensus         8 g~Vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~   69 (279)
T cd05633           8 GEVYGCRKADTGK-------MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFH-----------TP   69 (279)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEe-----------cC
Confidence            5677777766776       778886654322111101  1122     344457888886555551           11


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      +    .++.++|+|.. ++..++.      .+.......+..++.|++.++.+ |..+|+|+|||     |+||++.. +
T Consensus        70 ~----~~~lv~e~~~~~~L~~~i~------~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dik-----p~Nil~~~-~  133 (279)
T cd05633          70 D----KLCFILDLMNGGDLHYHLS------QHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLK-----PANILLDE-H  133 (279)
T ss_pred             C----eEEEEEecCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCC-----HHHEEECC-C
Confidence            1    26788999874 5544443      23347888899999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +.++++|||+++...........+|..|+||
T Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aP  164 (279)
T cd05633         134 GHVRISDLGLACDFSKKKPHASVGTHGYMAP  164 (279)
T ss_pred             CCEEEccCCcceeccccCccCcCCCcCccCH
Confidence            8899999999874322222345788889887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.85  E-value=1.7e-09  Score=105.66  Aligned_cols=131  Identities=17%  Similarity=0.145  Sum_probs=90.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++..|.       .+|+|.+...........-.+|  +++.++|+||++..+.+          ..     .-
T Consensus         9 g~vy~~~~~~~~~-------~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~~-----~~   66 (252)
T cd05084           9 GEVFSGRLRADNT-------PVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC----------TQ-----KQ   66 (252)
T ss_pred             ccEEEEEEecCCc-------eEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEE----------cC-----CC
Confidence            4566666665665       6777765432211111111233  67888999999766554          11     12


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      +++.+++++. .++..++..     .....+...+..++.|++.++.+ |.++|+|+|+|     |.||++.. ++.+|+
T Consensus        67 ~~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~-----p~nil~~~-~~~~kl  135 (252)
T cd05084          67 PIYIVMELVQGGDFLTFLRT-----EGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLA-----ARNCLVTE-KNVLKI  135 (252)
T ss_pred             CeEEEEeeccCCcHHHHHHh-----CCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccc-----hheEEEcC-CCcEEE
Confidence            3778899886 455555431     12346788899999999999999 99999999999     99999964 578999


Q ss_pred             ecCCCCCC
Q psy17422        487 CDFGSASW  494 (512)
Q Consensus       487 ~DfGlar~  494 (512)
                      +|||+++.
T Consensus       136 ~dfg~~~~  143 (252)
T cd05084         136 SDFGMSRE  143 (252)
T ss_pred             CccccCcc
Confidence            99999874

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=98.83  E-value=7.7e-10  Score=110.31  Aligned_cols=144  Identities=21%  Similarity=0.202  Sum_probs=102.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+....... .... .+|  ++..++||||+...+.|.           ...   
T Consensus        15 ~~v~~~~~~~~~~-------~~aiK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~---   72 (279)
T cd06619          15 GTVYKAYHLLTRR-------ILAVKVIPLDITVE-LQKQIMSELEILYKCDSPYIIGFYGAFF-----------VEN---   72 (279)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecCCChH-HHHHHHHHHHHHHhCCCCCeeeEEEEEE-----------ECC---
Confidence            6678888877777       78888764321111 1111 233  577789999998776662           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       ..+.+++++...+-..      |   ...+...+..++.|++.++.+ |..+|+|+|+|     |.||++.. ++.+|+
T Consensus        73 -~~~lv~e~~~~~~l~~------~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nill~~-~~~~~l  136 (279)
T cd06619          73 -RISICTEFMDGGSLDV------Y---RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVK-----PSNMLVNT-RGQVKL  136 (279)
T ss_pred             -EEEEEEecCCCCChHH------h---hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCC-----HHHEEECC-CCCEEE
Confidence             2567888887543221      1   125667788899999999999 99999999999     99999975 589999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||++........+.+++|..|+||
T Consensus       137 ~dfg~~~~~~~~~~~~~~~~~~y~aP  162 (279)
T cd06619         137 CDFGVSTQLVNSIAKTYVGTNAYMAP  162 (279)
T ss_pred             eeCCcceecccccccCCCCChhhcCc
Confidence            99999875444445567888899988

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=98.83  E-value=1.7e-09  Score=108.29  Aligned_cols=150  Identities=17%  Similarity=0.088  Sum_probs=103.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCch-HHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPS-SVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~-~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.... ....... ..+|  +++.++|+|++.....|          .. .   
T Consensus        14 g~vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~----------~~-~---   72 (285)
T cd05632          14 GEVCACQVRATGK-------MYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAY----------ET-K---   72 (285)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEE----------ec-C---
Confidence            5667777777776       78888765321 1111111 1233  78889999998655444          11 1   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -+++.+++++.. ++..++.-    ......+...+..++.|++.++.+ |..+|+|+|||     |+|+++.. ++.+
T Consensus        73 -~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dik-----p~Nili~~-~~~~  141 (285)
T cd05632          73 -DALCLVLTIMNGGDLKFHIYN----MGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLK-----PENILLDD-YGHI  141 (285)
T ss_pred             -CEEEEEEEeccCccHHHHHHH----hcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC-----HHHEEECC-CCCE
Confidence             137788888874 44333321    112247888999999999999999 99999999999     99999975 4789


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++... .......+++.+|+||
T Consensus       142 kl~Dfg~~~~~~~~~~~~~~~g~~~~~aP  170 (285)
T cd05632         142 RISDLGLAVKIPEGESIRGRVGTVGYMAP  170 (285)
T ss_pred             EEecCCcceecCCCCcccCCCCCcCccCh
Confidence            999999986432 2334456789999998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.83  E-value=3.1e-09  Score=107.38  Aligned_cols=156  Identities=20%  Similarity=0.238  Sum_probs=106.9

Q ss_pred             cchhhhcccc--CCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDE--NGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~--~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.+..  +|.       .+|+|.+.... ........ .+|  ++..++||||++..+.|.          ..+ 
T Consensus        14 g~v~~~~~~~~~~~~-------~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----------~~~-   75 (316)
T cd07842          14 GRVYKAKRKNGKDGK-------EYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFL----------EHA-   75 (316)
T ss_pred             EEEEEEEecCCCCCC-------eEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEe----------CCC-
Confidence            5566777666  555       88888876532 11222222 344  688899999997766551          111 


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC---C
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE---S  480 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~---~  480 (512)
                        ..-++.+++++..++..++.-... ..........++.++.|++.++.+ |..+|+|+|||     |+||++..   .
T Consensus        76 --~~~~~lv~e~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlk-----p~Nil~~~~~~~  147 (316)
T cd07842          76 --DKSVYLLFDYAEHDLWQIIKFHRQ-AKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLK-----PANILVMGEGPE  147 (316)
T ss_pred             --CceEEEEEeCCCcCHHHHHHhhcc-CCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCC-----HHHEEEcCCCCc
Confidence              112788999998776665532111 112246788899999999999999 99999999999     99999975   1


Q ss_pred             CCeEEEecCCCCCCCCC-----CCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWSHE-----NEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~~~-----~~~t~yv~tr~YraP  512 (512)
                      ++.+|++|||+++....     ......++|.+|+||
T Consensus       148 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  184 (316)
T cd07842         148 RGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAP  184 (316)
T ss_pred             cceEEECCCccccccCCCcccccccCCccccccccCH
Confidence            48899999999873211     112345788999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.83  E-value=1.8e-09  Score=107.80  Aligned_cols=148  Identities=18%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCC-----chH--HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTV-----PSS--VASILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i-----~~~--~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.+..+|.       .+|+|.+.........     ..+  +..+++...|+||+.....|           ...
T Consensus         8 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~   69 (278)
T cd05606           8 GEVYGCRKADTGK-------MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----------HTP   69 (278)
T ss_pred             eEEEEEEEecCCC-------EEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeee-----------ecC
Confidence            5677777777777       7888877543211111     111  11134556789988655555           111


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      .    .++.++++|.. ++..++.      .+.......++.++.|++.++.+ |..+|+|+|||     |+||++.. +
T Consensus        70 ~----~~~~v~e~~~g~~L~~~l~------~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~-----p~nili~~-~  133 (278)
T cd05606          70 D----KLSFILDLMNGGDLHYHLS------QHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLK-----PANILLDE-H  133 (278)
T ss_pred             C----EEEEEEecCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCC-----HHHEEECC-C
Confidence            1    26788999874 4433332      23346788999999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++..........+++..|+||
T Consensus       134 ~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aP  164 (278)
T cd05606         134 GHVRISDLGLACDFSKKKPHASVGTHGYMAP  164 (278)
T ss_pred             CCEEEccCcCccccCccCCcCcCCCcCCcCc
Confidence            7899999999874332223345788889887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.83  E-value=1.4e-09  Score=122.34  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=102.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+..... ....... .+|  ++..++|+||+.....+           ....  
T Consensus        18 g~Vy~a~~~~~~~-------~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~-----------~~~~--   77 (669)
T cd05610          18 GKVYLGRKKNNSK-------LYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSL-----------QSAN--   77 (669)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEE-----------EECC--
Confidence            5677777777776       889988754321 1111112 122  57778999999654433           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|++|. .++..++...      ...+...++.++.|++.+|.| |..+|+|+|||     |+||++.. .+.+
T Consensus        78 --~~~lVmEy~~g~~L~~li~~~------~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLK-----P~NILl~~-~g~v  143 (669)
T cd05610          78 --NVYLVMEYLIGGDVKSLLHIY------GYFDEEMAVKYISEVALALDYLHRHGIIHRDLK-----PDNMLISN-EGHI  143 (669)
T ss_pred             --EEEEEEeCCCCCCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCcc-----HHHEEEcC-CCCE
Confidence              2789999996 5666665422      236777889999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++...  .......++|..|.+|
T Consensus       144 kL~DFGls~~~~~~~~~~~~~~~t~~~~~p  173 (669)
T cd05610         144 KLTDFGLSKVTLNRELNMMDILTTPSMAKP  173 (669)
T ss_pred             EEEeCCCCccccCCcccccccccCccccCc
Confidence            999999998432  2234456677776665

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.82  E-value=2.2e-09  Score=109.61  Aligned_cols=153  Identities=23%  Similarity=0.238  Sum_probs=107.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++|+||+...+.+.          .....+.
T Consensus        14 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~----------~~~~~~~   76 (330)
T cd07834          14 GVVCSAVDKRTGR-------KVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILR----------PPSPEDF   76 (330)
T ss_pred             eEEEEEEeCCCCc-------EEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhc----------ccCcccc
Confidence            5677777777777       7888887765432222222 333  578889999986655441          1110111


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.+++++..++..++      ......+...+..++.+++.++.+ |..+|+|+|||     |.||++... +.+++
T Consensus        77 ~~~~lv~e~~~~~l~~~l------~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlk-----p~nili~~~-~~~~L  144 (330)
T cd07834          77 NDVYIVTELMETDLHKVI------KSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLK-----PSNILVNSN-CDLKI  144 (330)
T ss_pred             cceEEEecchhhhHHHHH------hCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcCC-CCEEE
Confidence            236788888876544443      333357788899999999999999 99999999999     999999754 89999


Q ss_pred             ecCCCCCCCCC-----CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE-----NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~-----~~~t~yv~tr~YraP  512 (512)
                      +|||++.....     .....+++|.+|+||
T Consensus       145 ~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  175 (330)
T cd07834         145 CDFGLARGVDPDEDEKGFLTEYVVTRWYRAP  175 (330)
T ss_pred             cccCceEeecccccccccccccccccCcCCc
Confidence            99999863221     235667899999998

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.81  E-value=2.6e-09  Score=107.19  Aligned_cols=149  Identities=22%  Similarity=0.227  Sum_probs=104.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC---CCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP---TTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~---~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.+..+|.       .+|+|.+......   ...... ..|  ++..++|+||++..+.|.          . + 
T Consensus        14 ~~vy~~~~~~~~~-------~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~----------~-~-   74 (298)
T cd07841          14 AVVYKARDKETGR-------IVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFG----------H-K-   74 (298)
T ss_pred             cEEEEEEECCCCc-------EEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheee----------c-C-
Confidence            4566666666666       7888887543222   112222 223  678889999997666551          1 1 


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         ..++.+++++..++..++.-..     ...+...+..++.|+++++.+ |..+|+|+||+     |+||++.. ++.
T Consensus        75 ---~~~~lv~e~~~~~L~~~i~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~-----p~nill~~-~~~  140 (298)
T cd07841          75 ---SNINLVFEFMETDLEKVIKDKS-----IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLK-----PNNLLIAS-DGV  140 (298)
T ss_pred             ---CEEEEEEcccCCCHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC-----hhhEEEcC-CCC
Confidence               1378899999777666654211     247788899999999999999 99999999999     99999975 588


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++++|||+++..  .....+...++.+|+||
T Consensus       141 ~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  171 (298)
T cd07841         141 LKLADFGLARSFGSPNRKMTHQVVTRWYRAP  171 (298)
T ss_pred             EEEccceeeeeccCCCccccccccceeeeCH
Confidence            999999998732  22234445667888887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG1035|consensus

Probab=98.81  E-value=2.9e-09  Score=120.71  Aligned_cols=93  Identities=23%  Similarity=0.313  Sum_probs=69.3

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      |+.-|++|+-++..++--.+.+    ..+......+++++++|+.| |..+|+|||+|     |.||.++ .++.+||.|
T Consensus       671 LYIQMEyCE~~ll~~iI~~N~~----~~~~d~~wrLFreIlEGLaYIH~~giIHRDLK-----P~NIFLd-~~~~VKIGD  740 (1351)
T KOG1035|consen  671 LYIQMEYCEKTLLRDIIRRNHF----NSQRDEAWRLFREILEGLAYIHDQGIIHRDLK-----PRNIFLD-SRNSVKIGD  740 (1351)
T ss_pred             EEEEHhhhhhhHHHHHHHhccc----chhhHHHHHHHHHHHHHHHHHHhCceeeccCC-----cceeEEc-CCCCeeecc
Confidence            4555666664443322222222    12567888899999999999 99999999999     9999998 458899999


Q ss_pred             CCCCCC--------------------CCCCCccCeeeeeeeccC
Q psy17422        489 FGSASW--------------------SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~--------------------~~~~~~t~yv~tr~YraP  512 (512)
                      ||+|..                    .+....|..|||-.|.||
T Consensus       741 FGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAP  784 (1351)
T KOG1035|consen  741 FGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAP  784 (1351)
T ss_pred             cccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecH
Confidence            999752                    011257899999999998

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.81  E-value=2.2e-09  Score=108.05  Aligned_cols=157  Identities=20%  Similarity=0.191  Sum_probs=106.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.........+.. .+|  +++.++|+||++..+.+..-      .-. .....
T Consensus        22 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~------~~~-~~~~~   87 (311)
T cd07866          22 GEVYKARQIKTGR-------VVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVER------PDK-SKRKR   87 (311)
T ss_pred             EEEEEEEECCCCc-------EEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecc------ccc-ccccC
Confidence            5677777777777       7888877544333322222 333  68888999999755443100      000 00011


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .-++.+++++..++..++.-     .....+...++.++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|+
T Consensus        88 ~~~~lv~~~~~~~l~~~~~~-----~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~-----p~nil~~~-~~~~~l  156 (311)
T cd07866          88 GSVYMVTPYMDHDLSGLLEN-----PSVKLTESQIKCYMLQLLEGINYLHENHILHRDIK-----AANILIDN-QGILKI  156 (311)
T ss_pred             ceEEEEEecCCcCHHHHHhc-----cccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEECC-CCCEEE
Confidence            12678889888765444431     12347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC-------------CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-------------~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...             ....+..+++.+|+||
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (311)
T cd07866         157 ADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPP  195 (311)
T ss_pred             CcCccchhccCCCcccccCCcccccccccceeccCcCCh
Confidence            9999986211             1123566889999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=98.80  E-value=1.9e-09  Score=112.95  Aligned_cols=71  Identities=23%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC-CCc---cCeeeeeeec
Q psy17422        436 GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE-NEI---TPYLVSRFYR  510 (512)
Q Consensus       436 ~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~-~~~---t~yv~tr~Yr  510 (512)
                      ..+...+..++.|++.++.| |.++|+|||||     |+||++.. .+.+|++|||+++.... ...   ....++..|+
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLk-----p~Nil~~~-~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~  281 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLASKNCIHRDVA-----ARNVLLTD-GRVAKICDFGLARDIMNDSNYVVKGNARLPVKWM  281 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHCCEEeccCc-----hheEEEeC-CCeEEEeeceeeeeccCCcceeeccCCCCcccee
Confidence            35677888999999999999 99999999999     99999975 48899999999874221 111   1122345688


Q ss_pred             cC
Q psy17422        511 AP  512 (512)
Q Consensus       511 aP  512 (512)
                      ||
T Consensus       282 aP  283 (374)
T cd05106         282 AP  283 (374)
T ss_pred             CH
Confidence            87

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=98.80  E-value=1.7e-09  Score=106.61  Aligned_cols=147  Identities=14%  Similarity=0.146  Sum_probs=100.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       .+|+|.+..... .....-.+|  +++.++|+||++..+.+          . ..    .
T Consensus        23 ~~v~~~~~~~~~~-------~~~ik~~~~~~~-~~~~~~~~e~~~~~~l~h~~ii~~~~~~----------~-~~----~   79 (267)
T cd06645          23 GDVYKARNVNTGE-------LAAIKVIKLEPG-EDFAVVQQEIIMMKDCKHSNIVAYFGSY----------L-RR----D   79 (267)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecCch-hHHHHHHHHHHHHHhCCCCCeeeEEEEE----------E-eC----C
Confidence            4456666666665       677776542211 111111223  67888999999766544          1 11    1


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++      +.....+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|+
T Consensus        80 ~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~nili~~-~~~~~l  147 (267)
T cd06645          80 KLWICMEFCGGGSLQDIY------HVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIK-----GANILLTD-NGHVKL  147 (267)
T ss_pred             EEEEEEeccCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCCEEE
Confidence            26788999874 554444      334457888999999999999999 99999999999     99999964 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||++....  ......++++..|+||
T Consensus       148 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  175 (267)
T cd06645         148 ADFGVSAQITATIAKRKSFIGTPYWMAP  175 (267)
T ss_pred             CcceeeeEccCcccccccccCcccccCh
Confidence            9999976321  1223456788889988

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0986|consensus

Probab=98.80  E-value=2.7e-09  Score=110.07  Aligned_cols=149  Identities=19%  Similarity=0.165  Sum_probs=114.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC----CCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI----PTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~----~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.|..++||.       .-|+|++.+-..    .....-..++||...+.+.||.+...|           +..   
T Consensus       199 GEV~acqvraTGK-------MYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAf-----------eTk---  257 (591)
T KOG0986|consen  199 GEVCACQVRATGK-------MYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAF-----------ETK---  257 (591)
T ss_pred             cceeEEEEecchh-------hHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeee-----------cCC---
Confidence            7889999999998       889988864321    122222234588888888888776666           221   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhh-ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRD-QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~-ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                       -.|+.+|-.|.. |+     -.++|.- ...+|+..+..|..+++.||.+ |..+|+-||+|     |+||+++. .|.
T Consensus       258 -d~LClVLtlMNGGDL-----kfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLK-----PeNILLDd-~Gh  325 (591)
T KOG0986|consen  258 -DALCLVLTLMNGGDL-----KFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLK-----PENILLDD-HGH  325 (591)
T ss_pred             -CceEEEEEeecCCce-----eEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCC-----hhheeecc-CCC
Confidence             238888888985 43     1344532 3468999999999999999999 99999999999     99999985 599


Q ss_pred             EEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +.|.|.|+|...+ +.+.+.-|||-.||||
T Consensus       326 vRISDLGLAvei~~g~~~~~rvGT~GYMAP  355 (591)
T KOG0986|consen  326 VRISDLGLAVEIPEGKPIRGRVGTVGYMAP  355 (591)
T ss_pred             eEeeccceEEecCCCCccccccCcccccCH
Confidence            9999999998654 5567777999999998

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.80  E-value=3.1e-09  Score=109.73  Aligned_cols=152  Identities=23%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.+.......... .+|  +++.++|+||+...+.|..- ..+        ...
T Consensus        29 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~--------~~~   92 (343)
T cd07880          29 GTVCSALDRRTGA-------KVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPD-LSL--------DRF   92 (343)
T ss_pred             eEEEEEEECCCCc-------EEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCC-ccc--------ccc
Confidence            5567777777777       7888887543332222222 233  68889999999877665200 000        001


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .-.+.+++++..++..++.       ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|+
T Consensus        93 ~~~~lv~e~~~~~l~~~~~-------~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlk-----p~Nill~~-~~~~kl  159 (343)
T cd07880          93 HDFYLVMPFMGTDLGKLMK-------HEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLK-----PGNLAVNE-DCELKI  159 (343)
T ss_pred             ceEEEEEecCCCCHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcC-CCCEEE
Confidence            1146788888666554442       2347788999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.... ....+.++++|+||
T Consensus       160 ~dfg~~~~~~~-~~~~~~~~~~y~aP  184 (343)
T cd07880         160 LDFGLARQTDS-EMTGYVVTRWYRAP  184 (343)
T ss_pred             eeccccccccc-CccccccCCcccCH
Confidence            99999875432 23456778889887

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.79  E-value=3.2e-09  Score=109.01  Aligned_cols=149  Identities=21%  Similarity=0.178  Sum_probs=103.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+...+.. .......+|  ++..+ +|+||++..+.|.          ..   +
T Consensus        21 ~~v~~~~~~~~~~-------~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~----------~~---~   80 (337)
T cd07852          21 GIVWKAIDRRTKE-------VVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIK----------AE---N   80 (337)
T ss_pred             eeEEEEEEcCCCe-------EEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeec----------cC---C
Confidence            4566666666665       7788877543321 111111233  57778 9999997666541          11   1


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.+++++..++.+++.      .+ ..+......++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|
T Consensus        81 ~~~~~lv~e~~~~~L~~~~~------~~-~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~-----p~nill~~-~~~~k  147 (337)
T cd07852          81 DKDIYLVFEYMETDLHAVIR------AN-ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLK-----PSNILLNS-DCRVK  147 (337)
T ss_pred             CceEEEEecccccCHHHHHh------cC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEEcC-CCcEE
Confidence            12267888998876655543      22 45667778899999999999 99999999999     99999975 58999


Q ss_pred             EecCCCCCCCC-------CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-------~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...       ......|++|.+|+||
T Consensus       148 l~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  181 (337)
T cd07852         148 LADFGLARSLSELEENPENPVLTDYVATRWYRAP  181 (337)
T ss_pred             EeeccchhccccccccccCcchhcccccccccCc
Confidence            99999986321       1234568899999998

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.79  E-value=3.5e-09  Score=109.15  Aligned_cols=157  Identities=20%  Similarity=0.189  Sum_probs=104.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHh----hhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKA----VKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~a----lk~F~~~~~  404 (512)
                      +.|+++.++.+|.       .+|+|.+..... .......+|  +++.++|+||++..+.+-.--..    ++.+.    
T Consensus        19 g~vy~~~~~~~~~-------~v~iK~i~~~~~-~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~----   86 (342)
T cd07854          19 GLVFSAVDSDCDK-------RVAVKKIVLTDP-QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLT----   86 (342)
T ss_pred             EEEEEEEECCCCc-------EEEEEEEecCCC-chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccccc----
Confidence            6788888888887       888887644321 111112333  68888999998654333100000    00000    


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                       ....++.+++++..++..++.       ........++.++.|++.++.+ |..+|+|+|||     |+||++...++.
T Consensus        87 -~~~~~~lv~e~~~~~L~~~~~-------~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dik-----p~Nili~~~~~~  153 (342)
T cd07854          87 -ELNSVYIVQEYMETDLANVLE-------QGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLK-----PANVFINTEDLV  153 (342)
T ss_pred             -ccceEEEEeecccccHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEEcCCCce
Confidence             011367888888766544432       2246788999999999999999 99999999999     999999766678


Q ss_pred             EEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...     ....+..+++.+|+||
T Consensus       154 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  187 (342)
T cd07854         154 LKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSP  187 (342)
T ss_pred             EEECCcccceecCCccccccccccccccccccCH
Confidence            9999999986321     1112334678889988

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.79  E-value=3.3e-09  Score=104.81  Aligned_cols=144  Identities=14%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++....++.     ...+|+|.+........-... .+|  +++.++|+||++....+.         ...+..+.
T Consensus        13 g~V~~~~~~~~~~-----~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---------~~~~~~~~   78 (272)
T cd05075          13 GSVMEGQLNQDDS-----ILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCL---------QTVESEGY   78 (272)
T ss_pred             ceEEEeEEccCCC-----eeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEc---------cCCcccCC
Confidence            4455555544443     124677665443211111111 223  677889999987654320         00111122


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .....++++|. .++..++.....-......+...+..++.|++.++.+ |.++|+|+|+|     |+||++.. ++.+|
T Consensus        79 ~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~k  152 (272)
T cd05075          79 PSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLA-----ARNCMLNE-NMNVC  152 (272)
T ss_pred             CCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccc-----hhheEEcC-CCCEE
Confidence            23567788987 4666665432221122236788899999999999999 99999999999     99999965 47899


Q ss_pred             EecCCCCCC
Q psy17422        486 LCDFGSASW  494 (512)
Q Consensus       486 l~DfGlar~  494 (512)
                      ++|||+++.
T Consensus       153 l~Dfg~~~~  161 (272)
T cd05075         153 VADFGLSKK  161 (272)
T ss_pred             ECCCCcccc
Confidence            999999874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.79  E-value=2.2e-10  Score=112.08  Aligned_cols=148  Identities=21%  Similarity=0.286  Sum_probs=107.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|.++.+..++.       ..|+|.+............ .+|  +++.++|+||++..+.+-           ...   
T Consensus        13 g~v~~~~~~~~~~-------~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~-----------~~~---   71 (260)
T PF00069_consen   13 GTVYKAKNKKNGQ-------KVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQ-----------DDN---   71 (260)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEE-----------ESS---
T ss_pred             EEEEEEEECCCCe-------EEEEEEeccccccccccchhhhhhhcccccccccccccccccc-----------ccc---
Confidence            5677888888887       6777776543211111111 123  577789999987655541           111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|.|+|||     |+||++. .++.++
T Consensus        72 -~~~~v~~~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dik-----p~NIl~~-~~~~~~  138 (260)
T PF00069_consen   72 -YLYIVMEYCPGGSLQDYLQ------KNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIK-----PENILLD-ENGEVK  138 (260)
T ss_dssp             -EEEEEEEEETTEBHHHHHH------HHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBS-----GGGEEES-TTSEEE
T ss_pred             -ccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc-----ccccccc-cccccc
Confidence             26789999987 6666665      33446888999999999999999 99999999999     9999998 458899


Q ss_pred             EecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||.+..  ..........+|.+|+||
T Consensus       139 l~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  167 (260)
T PF00069_consen  139 LIDFGSSVKLSENNENFNPFVGTPEYMAP  167 (260)
T ss_dssp             ESSGTTTEESTSTTSEBSSSSSSGGGSCH
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            999999863  333445677888899987

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=98.78  E-value=2.8e-09  Score=106.93  Aligned_cols=150  Identities=18%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CC-CchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TT-VPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~-i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.+..++.       .+|+|.+...... .. .....+|  +++.++|+|++.....|.           ..   
T Consensus        14 g~v~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~-----------~~---   72 (285)
T cd05630          14 GEVCACQVRATGK-------MYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYE-----------TK---   72 (285)
T ss_pred             eEEEEEEEcCCCc-------eEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEe-----------cC---
Confidence            5677777777777       7788876532111 11 1111233  688889999986555441           11   


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -+++.++++|. .++..++...    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        73 -~~~~lv~e~~~g~~L~~~l~~~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dik-----p~Nil~~~-~~~~  141 (285)
T cd05630          73 -DALCLVLTLMNGGDLKFHIYHM----GEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLK-----PENILLDD-HGHI  141 (285)
T ss_pred             -CEEEEEEEecCCCcHHHHHHHh----cccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC-----HHHEEECC-CCCE
Confidence             24788999987 4565555321    12246778889999999999999 99999999999     99999875 5789


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +++|||++.... .......++|..|+||
T Consensus       142 ~l~Dfg~~~~~~~~~~~~~~~g~~~y~aP  170 (285)
T cd05630         142 RISDLGLAVHVPEGQTIKGRVGTVGYMAP  170 (285)
T ss_pred             EEeeccceeecCCCccccCCCCCccccCh
Confidence            999999987432 2233455788899988

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0194|consensus

Probab=98.78  E-value=3e-09  Score=113.05  Aligned_cols=135  Identities=12%  Similarity=0.002  Sum_probs=93.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|++..=+..+..   .+..||+|.+....  ....+-.-++|  +|+.++||||+....+.               ..
T Consensus       171 GeV~~G~l~~~~~~---~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa---------------~~  232 (474)
T KOG0194|consen  171 GEVFKGKLKLKNGF---KVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVA---------------VL  232 (474)
T ss_pred             cEEEEEEEEecCCc---eeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEE---------------cC
Confidence            55555544444331   12237888876411  11111111344  78889999999554432               33


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      ..|++.+|+.|.. ++..|++-.     +...+..+-..++.+...|+.| |.++++||||-     ++|+++... ..+
T Consensus       233 ~~Pl~ivmEl~~gGsL~~~L~k~-----~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIA-----ARNcL~~~~-~~v  301 (474)
T KOG0194|consen  233 EEPLMLVMELCNGGSLDDYLKKN-----KKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIA-----ARNCLYSKK-GVV  301 (474)
T ss_pred             CCccEEEEEecCCCcHHHHHHhC-----CCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHh-----HHHheecCC-CeE
Confidence            4589999999985 776666421     2236777788899999999999 99999999999     999999754 778


Q ss_pred             EEecCCCCCC
Q psy17422        485 KLCDFGSASW  494 (512)
Q Consensus       485 Kl~DfGlar~  494 (512)
                      |++|||+++.
T Consensus       302 KISDFGLs~~  311 (474)
T KOG0194|consen  302 KISDFGLSRA  311 (474)
T ss_pred             EeCccccccC
Confidence            9999999884

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.78  E-value=3.5e-09  Score=103.96  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=98.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC----CchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT----VPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~----i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+.+.+..+|.       .+|+|.+........    +..-.+|  +++.++|+||+...+.|           ..+.
T Consensus        16 ~~vy~~~~~~~~~-------~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----------~~~~   77 (263)
T cd06625          16 GRVYLCYDVDTGR-------ELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCL-----------RDDE   77 (263)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEE-----------ccCC
Confidence            4456666666666       677776543211111    1111122  67888999998765544           1111


Q ss_pred             CCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        405 NGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                          -++.+++++.. ++.+++.      .....+...++.++.|++.++.+ |..+|+|+||+     |+||++.. .+
T Consensus        78 ----~~~~v~e~~~~~~l~~~~~------~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~-----p~nilv~~-~~  141 (263)
T cd06625          78 ----TLSIFMEYMPGGSVKDQLK------AYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIK-----GANILRDS-AG  141 (263)
T ss_pred             ----eEEEEEEECCCCcHHHHHH------HhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcC-CC
Confidence                37788888864 4434332      33346777888999999999999 99999999999     99999974 58


Q ss_pred             eEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      .++++|||+++...     ......+.++.+|+||
T Consensus       142 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  176 (263)
T cd06625         142 NVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSP  176 (263)
T ss_pred             CEEEeecccceeccccccccccccCCCcCccccCc
Confidence            89999999986321     1112456778889988

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.78  E-value=5.1e-09  Score=104.17  Aligned_cols=150  Identities=23%  Similarity=0.276  Sum_probs=106.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++|+|+++..+.++          + .    
T Consensus        13 ~~vy~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~----------~-~----   70 (283)
T cd07835          13 GVVYKARDKLTGE-------IVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVH----------S-E----   70 (283)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheec----------c-C----
Confidence            5677777777777       7888877543322333333 333  678889999997655442          1 1    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -..+.+++++..++.+++....    ....+...+..++.|++.++.+ |.++++|+|++     |+|+++.. ++.+++
T Consensus        71 ~~~~iv~e~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~-----p~nil~~~-~~~~~l  140 (283)
T cd07835          71 NKLYLVFEFLDLDLKKYMDSSP----LTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLK-----PQNLLIDR-EGALKL  140 (283)
T ss_pred             CeEEEEEeccCcCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----HHHEEEcC-CCcEEE
Confidence            1267888888766655553221    1246788999999999999999 99999999999     99999976 589999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  .....+..+++..|+||
T Consensus       141 ~df~~~~~~~~~~~~~~~~~~~~~~~aP  168 (283)
T cd07835         141 ADFGLARAFGVPVRTYTHEVVTLWYRAP  168 (283)
T ss_pred             eecccccccCCCccccCccccccCCCCC
Confidence            999998732  22233445667788887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.77  E-value=4.5e-09  Score=104.43  Aligned_cols=150  Identities=22%  Similarity=0.225  Sum_probs=104.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++....++.       .+|+|.+.............+|  .+..++ |+|++.....|          .. .+   
T Consensus        13 g~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~----------~~-~~---   71 (283)
T cd07830          13 GSVYLARNKETGE-------LVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVF----------RE-ND---   71 (283)
T ss_pred             eEEEEEEECCCCc-------EEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHh----------hc-CC---
Confidence            5567777666666       7788877654332111111233  455667 99998654444          11 11   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       ..+.+++++..++..++..+.    ....+...+..++.|++.++.+ |.++|+|+|++     |.||++.. ++.+++
T Consensus        72 -~~~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~-----~~ni~i~~-~~~~~l  140 (283)
T cd07830          72 -ELYFVFEYMEGNLYQLMKDRK----GKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLK-----PENLLVSG-PEVVKI  140 (283)
T ss_pred             -cEEEEEecCCCCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----hhhEEEcC-CCCEEE
Confidence             267899999776655543222    1246788899999999999999 99999999999     99999975 589999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||++... .....+.++++.+|+||
T Consensus       141 ~d~~~~~~~~~~~~~~~~~~~~~~~aP  167 (283)
T cd07830         141 ADFGLAREIRSRPPYTDYVSTRWYRAP  167 (283)
T ss_pred             eecccceeccCCCCcCCCCCcccccCc
Confidence            999998743 22334567888899988

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG1151|consensus

Probab=98.76  E-value=5e-09  Score=107.57  Aligned_cols=150  Identities=16%  Similarity=0.129  Sum_probs=104.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHH--hhhhcCCCC----CchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKA--VNFALIPTT----VPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDN  402 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~--v~~~~~~~~----i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~  402 (512)
                      +.|+++++=       +|+.-+|+|.  +++.|...+    .....||  |-+.+.||-||++.+.|-         ++.
T Consensus       477 SEVyKAFDl-------~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfs---------lDt  540 (775)
T KOG1151|consen  477 SEVYKAFDL-------TEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFS---------LDT  540 (775)
T ss_pred             HHHHHhccc-------chhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeee---------ecc
Confidence            445555543       2344667664  555554322    2222455  788899999998888772         122


Q ss_pred             CCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC---CCCCCChHHHHhhcccccccccc
Q psy17422        403 EGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ---PSSAITEAQVKLFCRNASFIHVN  478 (512)
Q Consensus       403 ~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~---h~~~I~hrdIK~Fc~n~~nIll~  478 (512)
                      +     ..+.+++|++. |+.-|++-.+..      .+.+.+.++.|++.+|.|   -...|+|-|+|     |.||++.
T Consensus       541 d-----sFCTVLEYceGNDLDFYLKQhklm------SEKEARSIiMQiVnAL~YLNEikpPIIHYDLK-----PgNILLv  604 (775)
T KOG1151|consen  541 D-----SFCTVLEYCEGNDLDFYLKQHKLM------SEKEARSIIMQIVNALKYLNEIKPPIIHYDLK-----PGNILLV  604 (775)
T ss_pred             c-----cceeeeeecCCCchhHHHHhhhhh------hHHHHHHHHHHHHHHHHHHhccCCCeeeeccC-----CccEEEe
Confidence            2     26789999985 777777655554      455788889999999988   34689999999     9999997


Q ss_pred             CCC--CeEEEecCCCCCCCCC---------CCccCeeeeeeeccC
Q psy17422        479 ESK--LVLKLCDFGSASWSHE---------NEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~~~--~~~Kl~DfGlar~~~~---------~~~t~yv~tr~YraP  512 (512)
                      .++  |.+||.|||++....+         ..-+...||-||.+|
T Consensus       605 ~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPP  649 (775)
T KOG1151|consen  605 NGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPP  649 (775)
T ss_pred             cCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCc
Confidence            654  6799999999873221         123467899999998

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.76  E-value=6.6e-09  Score=106.55  Aligned_cols=152  Identities=23%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             cchhhhccccC--CCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDEN--GIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~--~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.++.+  +.       .+|+|.+............ .+|  +++.+ +|+||++..+.+.       .+..   
T Consensus        14 g~vy~~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~-------~~~~---   76 (332)
T cd07857          14 GIVCSARNAETSEEE-------TVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDI-------VFPG---   76 (332)
T ss_pred             eEEEEEEeCCCCcCc-------eEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeee-------eccc---
Confidence            44555555555  44       6788877644332221112 334  45555 5999986544320       0001   


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                       +..-++..++.+..++..++.      .....+...++.++.|++.+|.+ |..+|+|+|||     |+||++.. ++.
T Consensus        77 -~~~~~~~~~e~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlk-----p~Nili~~-~~~  143 (332)
T cd07857          77 -NFNELYLYEELMEADLHQIIR------SGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLK-----PGNLLVNA-DCE  143 (332)
T ss_pred             -cCCcEEEEEecccCCHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHeEEcC-CCC
Confidence             111155667777766544442      33447888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCCC------CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~------~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...      ......+++|..|+||
T Consensus       144 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aP  178 (332)
T cd07857         144 LKICDFGLARGFSENPGENAGFMTEYVATRWYRAP  178 (332)
T ss_pred             EEeCcCCCceecccccccccccccCcccCccccCc
Confidence            9999999987321      1123457899999998

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.76  E-value=2.9e-09  Score=109.98  Aligned_cols=152  Identities=24%  Similarity=0.260  Sum_probs=102.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..++|+||++..+.|.    .-..+.     ..
T Consensus        31 g~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~----~~~~~~-----~~   94 (345)
T cd07877          31 GSVCAAFDTKTGL-------RVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT----PARSLE-----EF   94 (345)
T ss_pred             eEEEEEEEcCCCe-------EEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee----eccccc-----cc
Confidence            5667777777777       7888877543221111111 233  688889999997765541    000010     00


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ...+.+.+.+..++..+++      . ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        95 ~~~~lv~~~~~~~L~~~~~------~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-----p~NIll~~-~~~~kl  161 (345)
T cd07877          95 NDVYLVTHLMGADLNNIVK------C-QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLK-----PSNLAVNE-DCELKI  161 (345)
T ss_pred             ccEEEEehhcccCHHHHHh------c-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----hHHEEEcC-CCCEEE
Confidence            1144555666555544432      1 236778889999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.... ....+.+|.+|+||
T Consensus       162 ~dfg~~~~~~~-~~~~~~~~~~y~aP  186 (345)
T cd07877         162 LDFGLARHTDD-EMTGYVATRWYRAP  186 (345)
T ss_pred             ecccccccccc-cccccccCCCccCH
Confidence            99999875432 34567889999988

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=98.75  E-value=3.9e-09  Score=104.11  Aligned_cols=147  Identities=14%  Similarity=0.139  Sum_probs=100.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+..... .......+|  +++.++|+||+.....|          .. .+    
T Consensus        23 g~vy~~~~~~~~~-------~~aik~~~~~~~-~~~~~~~~e~~~l~~~~h~~ii~~~~~~----------~~-~~----   79 (267)
T cd06646          23 GDVYKARNLHTGE-------LAAVKIIKLEPG-DDFSLIQQEIFMVKECKHCNIVAYFGSY----------LS-RE----   79 (267)
T ss_pred             eEEEEEEECCCCe-------EEEEEEEecCcc-chHHHHHHHHHHHHhcCCCCeeeeeEEE----------Ee-CC----
Confidence            4566666666665       677776642211 111111223  67888999999765544          11 11    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++      +.+...+...+..++.|++.++.+ |..+|+|+|++     |+|+++.. ++.+|+
T Consensus        80 ~~~iv~e~~~~~~L~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~nill~~-~~~~~l  147 (267)
T cd06646          80 KLWICMEYCGGGSLQDIY------HVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIK-----GANILLTD-NGDVKL  147 (267)
T ss_pred             EEEEEEeCCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEECC-CCCEEE
Confidence            26788999875 443333      333456788899999999999999 99999999999     99999964 578999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ......+.++..|+||
T Consensus       148 ~dfg~~~~~~~~~~~~~~~~~~~~y~~P  175 (267)
T cd06646         148 ADFGVAAKITATIAKRKSFIGTPYWMAP  175 (267)
T ss_pred             CcCccceeecccccccCccccCccccCH
Confidence            9999987321  2223456788888887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=98.75  E-value=6.3e-09  Score=102.43  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=100.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC----CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT----VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~----i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.+..+|.       .+|+|.+........    .... .+|  +++.++|+|+++..+.|          .+ .
T Consensus        14 ~~v~~~~~~~~~~-------~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~----------~~-~   75 (268)
T cd06630          14 SSCYQARDVKTGT-------LMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGAT----------CE-D   75 (268)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhcee----------cc-C
Confidence            4566666666666       778877653321111    1112 233  57888999999766555          11 1


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      ++    ...+++++.. ++..++      +.+...+...+..++.|++.++.+ |..+++|+||+     |+||++....
T Consensus        76 ~~----~~~v~e~~~~~~L~~~l------~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~-----~~nil~~~~~  140 (268)
T cd06630          76 SH----FNLFVEWMAGGSVSHLL------SKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVK-----GANLLIDSTG  140 (268)
T ss_pred             Ce----EEEEEeccCCCcHHHHH------HHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcCCC
Confidence            11    6678888874 444443      233356788899999999999999 99999999999     9999997554


Q ss_pred             CeEEEecCCCCCCCCC------CCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHE------NEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~------~~~t~yv~tr~YraP  512 (512)
                      ..+|++|||.++....      ..-..+++|..|+||
T Consensus       141 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~P  177 (268)
T cd06630         141 QRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAP  177 (268)
T ss_pred             CEEEEcccccccccccccccCCccccccccccceeCH
Confidence            5799999999763211      111235678888887

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.75  E-value=6.8e-09  Score=106.57  Aligned_cols=147  Identities=24%  Similarity=0.316  Sum_probs=104.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.+.......... .+|  +++.++|||+++..+.|+          ... .  
T Consensus        24 g~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~----------~~~-~--   83 (328)
T cd07856          24 GLVCSARDQLTGQ-------NVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFI----------SPL-E--   83 (328)
T ss_pred             eEEEEEEECCCCC-------EEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEe----------cCC-C--
Confidence            5677777777777       7888877543332222222 233  688889999998766652          111 1  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|..++..+++       +...+...+..++.|++.++.+ |..+|+|+|++     |.|+++.. ++.+|+
T Consensus        84 -~~~lv~e~~~~~L~~~~~-------~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~-----p~Nili~~-~~~~~l  149 (328)
T cd07856          84 -DIYFVTELLGTDLHRLLT-------SRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLK-----PSNILINE-NCDLKI  149 (328)
T ss_pred             -cEEEEeehhccCHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEeECC-CCCEEe
Confidence             156788888766554442       1235667788899999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.... ....++++..|+||
T Consensus       150 ~dfg~~~~~~~-~~~~~~~~~~y~aP  174 (328)
T cd07856         150 CDFGLARIQDP-QMTGYVSTRYYRAP  174 (328)
T ss_pred             CccccccccCC-CcCCCcccccccCc
Confidence            99999874322 23456778888887

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=98.75  E-value=4.2e-09  Score=110.32  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=54.5

Q ss_pred             CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC-C---ccCeeeeeeec
Q psy17422        436 GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN-E---ITPYLVSRFYR  510 (512)
Q Consensus       436 ~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~-~---~t~yv~tr~Yr  510 (512)
                      ..+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..... .   .....++..|+
T Consensus       210 ~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-----p~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~  283 (375)
T cd05104         210 ALDTEDLLSFSYQVAKGMSFLASKNCIHRDLA-----ARNILLTH-GRITKICDFGLARDIRNDSNYVVKGNARLPVKWM  283 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCc-----hhhEEEEC-CCcEEEecCccceeccCcccccccCCCCCCccee
Confidence            35777888999999999999 99999999999     99999975 478999999998732211 1   11123345688


Q ss_pred             cC
Q psy17422        511 AP  512 (512)
Q Consensus       511 aP  512 (512)
                      ||
T Consensus       284 aP  285 (375)
T cd05104         284 AP  285 (375)
T ss_pred             Ch
Confidence            87

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.75  E-value=3.7e-09  Score=103.53  Aligned_cols=150  Identities=20%  Similarity=0.232  Sum_probs=100.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+.+.+..++.       ..|+|.+.............+|  +++.++|+|++...+.|           ...+    
T Consensus        14 g~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~~----   71 (255)
T cd08219          14 GRALLVQHVNSDQ-------KYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESF-----------EADG----   71 (255)
T ss_pred             eEEEEEEEcCCCc-------eEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEE-----------EECC----
Confidence            3455566666666       6777766432211111111222  67888999998766655           1111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++..+    .....+...+..++.|++.++.+ |.++|+|+|+|     |.||++.. ++.+++
T Consensus        72 ~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~-----p~nili~~-~~~~~l  141 (255)
T cd08219          72 HLYIVMEYCDGGDLMQKIKLQ----RGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIK-----SKNIFLTQ-NGKVKL  141 (255)
T ss_pred             EEEEEEeeCCCCcHHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC-----cceEEECC-CCcEEE
Confidence            37788999874 555554321    11235778888999999999999 99999999999     99999864 588999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  .......++++..|+||
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~~~aP  169 (255)
T cd08219         142 GDFGSARLLTSPGAYACTYVGTPYYVPP  169 (255)
T ss_pred             cccCcceeecccccccccccCCccccCH
Confidence            999998732  22223456788888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>KOG1989|consensus

Probab=98.75  E-value=5.5e-09  Score=115.39  Aligned_cols=124  Identities=16%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      +.|+|++.-. ....+-.-.+|  +|+.++ |+|||.+-+..     +++.-   .+.+..=+..-||+|. ..+-.|+.
T Consensus        64 ~~AlKrm~~~-de~~L~~v~~EI~~MK~L~gh~nIV~yidss-----~~~~~---~~~~~~EvllLmEyC~gg~Lvd~mn  134 (738)
T KOG1989|consen   64 KYALKRMYVN-DEEALNAVKREIDIMKLLSGHKNIVSYIDSS-----AINRS---SNNGVWEVLLLMEYCKGGSLVDFMN  134 (738)
T ss_pred             eeeeeeeecC-CHHHHHHHHHHHHHHHHhcCCCceeeEeccc-----ccccc---CCCceeEEEeehhhccCCcHHHHHH
Confidence            6777776432 11111111244  688887 99999766532     11111   1122233566688888 46666654


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                         -+ -+..+.+.+|..+++++++|+.+ |...  |+|||||     .+|+|+.. .+..|+||||.|.
T Consensus       135 ---~R-lq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLK-----iENvLls~-~g~~KLCDFGSat  194 (738)
T KOG1989|consen  135 ---TR-LQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLK-----IENVLLSA-DGNYKLCDFGSAT  194 (738)
T ss_pred             ---HH-HhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhh-----hhheEEcC-CCCEEeCcccccc
Confidence               11 12237788999999999999988 8765  9999999     99999975 5899999999986

>KOG0612|consensus

Probab=98.74  E-value=3.2e-09  Score=119.56  Aligned_cols=148  Identities=21%  Similarity=0.194  Sum_probs=103.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhh--c-C-CCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFA--L-I-PTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~--~-~-~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|.=.+++.++.       .-|+|.+++-  . . .+..-.+-|++|..-++         =|+. ..--.|.+. .+ 
T Consensus        89 GEV~lVr~k~t~~-------VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns---------~Wiv-~LhyAFQD~-~~-  149 (1317)
T KOG0612|consen   89 GEVALVRHKSTEK-------VYAMKILNKWEMLKRAETACFREERDIMVFGNS---------EWIV-QLHYAFQDE-RY-  149 (1317)
T ss_pred             ceeEEEEeecccc-------chhHHHhhHHHHhhchhHHHHHHHhHHHHcCCc---------HHHH-HHHHHhcCc-cc-
Confidence            6677778888888       6799998762  1 1 11222223446655333         3432 222245443 34 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         ||.+|+||.+ |+   ++|-.-|.   ..++...+.|...++-||.. |..|.+|||||     |.|+++... |++
T Consensus       150 ---LYlVMdY~pGGDl---ltLlSk~~---~~pE~~ArFY~aEiVlAldslH~mgyVHRDiK-----PDNvLld~~-GHi  214 (1317)
T KOG0612|consen  150 ---LYLVMDYMPGGDL---LTLLSKFD---RLPEDWARFYTAEIVLALDSLHSMGYVHRDIK-----PDNVLLDKS-GHI  214 (1317)
T ss_pred             ---eEEEEecccCchH---HHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhccceeccCC-----cceeEeccc-CcE
Confidence               9999999984 64   45544443   37788899999999999999 99999999999     999999875 999


Q ss_pred             EEecCCCCC-CCC-CC-CccCeeeeeeeccC
Q psy17422        485 KLCDFGSAS-WSH-EN-EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar-~~~-~~-~~t~yv~tr~YraP  512 (512)
                      |++|||.+- ... +. ....-|||+-|.+|
T Consensus       215 kLADFGsClkm~~dG~V~s~~aVGTPDYISP  245 (1317)
T KOG0612|consen  215 KLADFGSCLKMDADGTVRSSVAVGTPDYISP  245 (1317)
T ss_pred             eeccchhHHhcCCCCcEEeccccCCCCccCH
Confidence            999999864 332 22 23456999999988

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.74  E-value=6.9e-09  Score=102.31  Aligned_cols=150  Identities=16%  Similarity=0.174  Sum_probs=100.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCch---H-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPS---S-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~---~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+.+.++.+|.       .+|+|.+........-..   . .+|  +++.++|+||++....|          .+.. 
T Consensus        16 g~v~~~~~~~~~~-------~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~----------~~~~-   77 (265)
T cd06652          16 GRVYLCYDADTGR-------ELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCL----------RDPM-   77 (265)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEe----------ccCC-
Confidence            4566666666666       788887643211111111   1 123  67888999999755433          1111 


Q ss_pred             CCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        405 NGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                        ...++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++
T Consensus        78 --~~~~~~v~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~-----p~nil~~~-~~  143 (265)
T cd06652          78 --ERTLSIFMEHMPGGSIKDQLK------SYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIK-----GANILRDS-VG  143 (265)
T ss_pred             --CceEEEEEEecCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEecC-CC
Confidence              1126678888864 5544443      22335777888899999999999 99999999999     99999864 58


Q ss_pred             eEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      .++++|||+++...     ........++..|+||
T Consensus       144 ~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  178 (265)
T cd06652         144 NVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSP  178 (265)
T ss_pred             CEEECcCccccccccccccccccccCCCCccccCh
Confidence            89999999987321     1223456788889988

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG0587|consensus

Probab=98.74  E-value=6.9e-09  Score=114.31  Aligned_cols=153  Identities=15%  Similarity=0.166  Sum_probs=103.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHh-hCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILN-DNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~-~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +-|.+.+++.+|+       -.|+|.....   .....+++.   ||+ ...|||++.....|.        |.++  .+
T Consensus        33 gkv~k~k~~~~~~-------~aa~kI~~~~---~d~deEiE~eynil~~~~~hpnv~~fyg~~~--------k~~~--~~   92 (953)
T KOG0587|consen   33 GKVYKGRHVKTGQ-------LAAIKIMDPT---EDEEEEIELEYNMLKKYSHHPNVATFYGAFI--------KKDP--GN   92 (953)
T ss_pred             eeEEEEeeeecCc-------eeeeEeecCC---ccccHHHHHHHHHHHhccCCCCcceEEEEEE--------EecC--CC
Confidence            4466777777776       5566654332   223333322   444 457999986555552        2222  22


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      --.|..+|++|.+.+  +.+|-+-.. ..+.++..+..+++.+|.|+.+ |.+.++|||||     -.||+++.. +.+|
T Consensus        93 ~DqLWLVMEfC~gGS--VTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDik-----G~NiLLT~e-~~VK  163 (953)
T KOG0587|consen   93 GDQLWLVMEFCGGGS--VTDLVKNTK-GNRLKEEWIAYILREILRGLAHLHNNKVIHRDIK-----GQNVLLTEN-AEVK  163 (953)
T ss_pred             CCeEEEEeeccCCcc--HHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHhhcceeeeccc-----CceEEEecc-CcEE
Confidence            234889999998544  333333222 3457888999999999999998 99999999999     999999864 8999


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||.+...  .-..-.+.+||+++|||
T Consensus       164 LvDFGvSaQldsT~grRnT~iGtP~WMAP  192 (953)
T KOG0587|consen  164 LVDFGVSAQLDSTVGRRNTFIGTPYWMAP  192 (953)
T ss_pred             EeeeeeeeeeecccccccCcCCCcccccc
Confidence            9999997632  11223468999999998

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.73  E-value=4.6e-09  Score=108.33  Aligned_cols=151  Identities=25%  Similarity=0.265  Sum_probs=104.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC-CC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG-NG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~-~~  406 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++|+|++...+.|.          ..+. ..
T Consensus        29 g~vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~~~~   91 (343)
T cd07851          29 GQVCSAFDTKTGR-------KVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFT----------PASSLED   91 (343)
T ss_pred             eEEEEEEECCCCc-------EEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhh----------ccccccc
Confidence            4566666666666       7888876543222211122 233  677889999986544331          1110 11


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.+++++..++..++..       ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|
T Consensus        92 ~~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlk-----p~Nill~~-~~~~k  158 (343)
T cd07851          92 FQDVYLVTHLMGADLNNIVKC-------QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLK-----PSNIAVNE-DCELK  158 (343)
T ss_pred             cccEEEEEecCCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEECC-CCCEE
Confidence            123678888887766666542       247888899999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.... ....++++.+|+||
T Consensus       159 L~dfg~~~~~~~-~~~~~~~~~~y~aP  184 (343)
T cd07851         159 ILDFGLARHTDD-EMTGYVATRWYRAP  184 (343)
T ss_pred             Eccccccccccc-cccCCcccccccCH
Confidence            999999875432 24567888999988

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.73  E-value=1e-08  Score=101.61  Aligned_cols=149  Identities=25%  Similarity=0.279  Sum_probs=106.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++....++.       .+|+|.+............ ..|  +++.++|+|+++....++           ..    
T Consensus        13 ~~vy~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----------~~----   70 (282)
T cd07829          13 GVVYKARDKKTGE-------IVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIH-----------TE----   70 (282)
T ss_pred             ceEEEeeecCCCc-------EEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhh-----------cC----
Confidence            4566666666666       7788887655433444443 333  678888999986554442           11    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.++|++..++..++....     ...+...+..++.+++.++.+ |.++|+|+||+     |.||++.. ++.+++
T Consensus        71 ~~~~~v~e~~~~~l~~~i~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~-----~~ni~~~~-~~~~~l  139 (282)
T cd07829          71 RKLYLVFEYCDMDLKKYLDKRP-----GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLK-----PQNILINR-DGVLKL  139 (282)
T ss_pred             CceEEEecCcCcCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----hheEEEcC-CCCEEE
Confidence            1277889998877766665321     347888999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  ..........+.+|+||
T Consensus       140 ~d~g~~~~~~~~~~~~~~~~~~~~~~aP  167 (282)
T cd07829         140 ADFGLARAFGIPLRTYTHEVVTLWYRAP  167 (282)
T ss_pred             ecCCcccccCCCccccCccccCcCcCCh
Confidence            999998732  22234455667788887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=98.73  E-value=4.8e-09  Score=103.65  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=81.9

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||++....|          .     ...+++.++++|. .++..++.-..... ....+...+..++.|++.
T Consensus        48 ~~~~l~h~nii~~~~~~----------~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~  111 (269)
T cd05042          48 PYRELNHPNVLQCLGQC----------I-----ESIPYLLVLEFCPLGDLKNYLRSNRGMV-AQMAQKDVLQRMACEVAS  111 (269)
T ss_pred             HHHhCCCCCcceEEEEE----------C-----CCCceEEEEEeCCCCcHHHHHHhccccc-cccccHHHHHHHHHHHHH
Confidence            56778999999766554          1     1124789999997 46666654322111 112356677889999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC-CCC---ccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH-ENE---ITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~-~~~---~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+||++.. ++.+|++|||+++... ...   .....++..|+||
T Consensus       112 ~l~~lH~~~ivH~dlk-----p~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  171 (269)
T cd05042         112 GLLWLHQADFIHSDLA-----LRNCQLTA-DLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAP  171 (269)
T ss_pred             HHHHHHhcCEeccccc-----HhheEecC-CCcEEEeccccccccccchheeccCCCCCcccccCH
Confidence            9999 99999999999     99999975 5889999999987421 111   1122345567776

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=98.72  E-value=5.6e-09  Score=104.71  Aligned_cols=147  Identities=20%  Similarity=0.148  Sum_probs=101.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+.....  ......-.+|  +++.++|+||+...+.|+           .. . 
T Consensus        15 ~~vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~-~-   74 (290)
T cd05580          15 GRVMLVRHKGSGK-------YYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQ-----------DD-S-   74 (290)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEE-----------cC-C-
Confidence            4566666666666       677776543210  0111111223  688889999997666552           11 1 


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.+++++. .++..++      +.....+...+..++.|++.++.+ |..+|+|+||+     |.||++.. ++.+
T Consensus        75 --~~~~v~e~~~~~~L~~~~------~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~-----p~nili~~-~~~~  140 (290)
T cd05580          75 --NLYLVMEYVPGGELFSHL------RKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLK-----PENLLLDS-DGYI  140 (290)
T ss_pred             --eEEEEEecCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----HHHEEECC-CCCE
Confidence              2678899995 5554444      333457788899999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..... .....++..|+||
T Consensus       141 kl~dfg~~~~~~~~-~~~~~~~~~y~aP  167 (290)
T cd05580         141 KITDFGFAKRVKGR-TYTLCGTPEYLAP  167 (290)
T ss_pred             EEeeCCCccccCCC-CCCCCCCccccCh
Confidence            99999998754332 2334677788887

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=98.72  E-value=4.8e-09  Score=107.34  Aligned_cols=149  Identities=15%  Similarity=0.101  Sum_probs=100.6

Q ss_pred             chhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        332 SVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       332 ~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      .|..+.++.+|.       .+|+|.+............+ +|  +++.++||||++....|          . .++    
T Consensus        15 ~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~----------~-~~~----   72 (327)
T cd08227          15 TVNLARYKPTGE-------YVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATF----------I-ADN----   72 (327)
T ss_pred             EEEEEeecccCc-------EEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEE----------E-ECC----
Confidence            456667777777       88999876543222222222 22  67888999999766554          1 111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.++|+|.. ++..++.-.  .  ....+...+..++.|++.++.| |..+|+|+|||     |+||++.. ++.+++
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~--~--~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlk-----p~Nil~~~-~~~~~l  142 (327)
T cd08227          73 ELWVVTSFMAYGSAKDLICTH--F--MDGMSELAIAYILQGVLKALDYIHHMGYVHRSVK-----ASHILISV-DGKVYL  142 (327)
T ss_pred             EEEEEEeccCCCcHHHHHHhh--c--cCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----hhhEEEec-CCcEEE
Confidence            27789999974 555554311  1  1236778889999999999999 99999999999     99999975 478899


Q ss_pred             ecCCCCCCC--CC-------CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HE-------NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~-------~~~t~yv~tr~YraP  512 (512)
                      .|||.+...  .+       ..-...+++..|+||
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  177 (327)
T cd08227         143 SGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSP  177 (327)
T ss_pred             cccchhhccccccccccccccccccccceecccCh
Confidence            999864311  10       011234677788888

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.72  E-value=4.9e-09  Score=104.41  Aligned_cols=141  Identities=11%  Similarity=0.081  Sum_probs=91.3

Q ss_pred             hHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      ..+|+|.+...... .....+ +|  ++..++|+||+.....+.           .    .-+++.+++++. .++..++
T Consensus        36 ~~vaiK~~~~~~~~-~~~~~~~~e~~~~~~l~h~~iv~~~~~~~-----------~----~~~~~~~~e~~~~~~l~~~l   99 (283)
T cd05091          36 QAVAIKTLKDKAEG-PLREEFKHEAMMRSRLQHPNIVCLLGVVT-----------K----EQPLSMIFSYCSHSDLHEFL   99 (283)
T ss_pred             eEEEEEEccCCCCH-HHHHHHHHHHHHHhcCCCCCcCeEEEEEc-----------C----CCceEEEEEcCCCCcHHHHH
Confidence            36788877532211 111112 22  677789999997655441           1    113667778876 4556665


Q ss_pred             HhHHh----------hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        426 ALQQL----------YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       426 ~L~~i----------y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .+...          ...+...+...+..++.|++.++.+ |..+|+|+|||     |.|+++.. .+.+|++|||+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlk-----p~Nil~~~-~~~~kl~Dfg~~~~  173 (283)
T cd05091         100 VMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLA-----TRNVLVFD-KLNVKISDLGLFRE  173 (283)
T ss_pred             HhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccc-----hhheEecC-CCceEecccccccc
Confidence            43211          1112346777888999999999999 99999999999     99999875 47899999999874


Q ss_pred             CCCC----CccCeeeeeeeccC
Q psy17422        495 SHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       495 ~~~~----~~t~yv~tr~YraP  512 (512)
                      ....    ......++..|+||
T Consensus       174 ~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05091         174 VYAADYYKLMGNSLLPIRWMSP  195 (283)
T ss_pred             cccchheeeccCccCCccccCH
Confidence            3211    11223445678887

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=98.72  E-value=9.5e-09  Score=100.30  Aligned_cols=151  Identities=18%  Similarity=0.201  Sum_probs=101.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++|+|++...+.|          .. .    
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~----------~~-~----   71 (256)
T cd08220          14 GIVHLCRRKADQK-------LVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENF----------LE-D----   71 (256)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeE----------ec-C----
Confidence            4455555555555       7788776532111111112 222  67888999998665544          11 1    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.+..+++++.. ++.+++.-..    ....+...+..++.+++.++.+ |.++|+|+|++     |+||++....+.+|
T Consensus        72 ~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~-----~~nil~~~~~~~~~  142 (256)
T cd08220          72 KALMIVMEYAPGGTLAEYIQKRC----NSLLDEDTILHFFVQILLALHHVHTKLILHRDLK-----TQNILLDKHKMVVK  142 (256)
T ss_pred             CEEEEEEecCCCCCHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcCCCCEEE
Confidence            126788999874 5666654221    2236778889999999999999 99999999999     99999976656789


Q ss_pred             EecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++|||++.... .......+++..|+||
T Consensus       143 l~d~~~~~~~~~~~~~~~~~~~~~y~aP  170 (256)
T cd08220         143 IGDFGISKILSSKSKAYTVVGTPCYISP  170 (256)
T ss_pred             EccCCCceecCCCccccccccCCcccCc
Confidence            99999987332 2222345678888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=98.71  E-value=6.6e-09  Score=102.80  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||++....+          .     ...+++.++++|. .++..++.-..... ....+...+..++.|++.
T Consensus        48 ~l~~l~h~~iv~~~~~~----------~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~  111 (269)
T cd05087          48 PYRSLQHSNLLQCLGQC----------T-----EVTPYLLVMEFCPLGDLKGYLRSCRKAE-LMTPDPTTLQRMACEIAL  111 (269)
T ss_pred             HHHhCCCCCEeeEEEEE----------c-----CCCCcEEEEECCCCCcHHHHHHHhhhcc-cccccHHHHHHHHHHHHH
Confidence            67888999998765444          1     1124778999997 56666664332211 123456677788999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+++|+|+|     |.||++.. ++.+|++|||+++.....    ......++..|+||
T Consensus       112 al~~lH~~~i~H~dlk-----p~nil~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  171 (269)
T cd05087         112 GLLHLHKNNFIHSDLA-----LRNCLLTA-DLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAP  171 (269)
T ss_pred             HHHHHHHCCEeccccC-----cceEEEcC-CCcEEECCccccccccCcceeecCCCcCCcccccCH
Confidence            9999 99999999999     99999975 578999999998732211    11223456678887

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.71  E-value=1.2e-08  Score=102.59  Aligned_cols=159  Identities=23%  Similarity=0.245  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.........+.. .+|  +++.++|||+++..+.+...--.. .|.+..    
T Consensus        21 g~v~~~~~~~~~~-------~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~-~~~~~~----   88 (302)
T cd07864          21 GQVYKARDKDTGE-------LVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL-DFKKDK----   88 (302)
T ss_pred             EEEEEEEECCCCc-------EEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhh-hccccC----
Confidence            5677777777776       7888887543322223223 333  678889999998665542110000 111111    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      --++.++++|..++..++.-     .....+...+..++.|++.++.+ |.++|+|+|+|     |+||++.. ++.+|+
T Consensus        89 ~~~~lv~e~~~~~l~~~l~~-----~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~-----p~nili~~-~~~~kl  157 (302)
T cd07864          89 GAFYLVFEYMDHDLMGLLES-----GLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIK-----CSNILLNN-KGQIKL  157 (302)
T ss_pred             CcEEEEEcccCccHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEECC-CCcEEe
Confidence            13778999998765444321     12347888999999999999999 99999999999     99999864 588999


Q ss_pred             ecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...   ...++..+++..|+||
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  186 (302)
T cd07864         158 ADFGLARLYNSEESRPYTNKVITLWYRPP  186 (302)
T ss_pred             CcccccccccCCcccccccceeccCccCh
Confidence            9999987321   1223334567778877

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.71  E-value=5.9e-09  Score=103.33  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=103.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.............+|  +++.++|+|++.....|          .+ +    .
T Consensus        15 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~~-~----~   72 (274)
T cd06609          15 GEVYKAIDKRTNQ-------VVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSF----------LK-G----S   72 (274)
T ss_pred             eEEEEEEECCCCe-------EEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEE----------EE-C----C
Confidence            5677777777776       7788876543211111111233  57888999999766554          11 1    2


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++.+++.      .. ..+...+..++.|++.++.+ |..+|.|+|++     |+|+++.. ++.+++
T Consensus        73 ~~~~v~e~~~~~~L~~~~~------~~-~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~-----p~ni~i~~-~~~~~l  139 (274)
T cd06609          73 KLWIIMEYCGGGSCLDLLK------PG-KLDETYIAFILREVLLGLEYLHEEGKIHRDIK-----AANILLSE-EGDVKL  139 (274)
T ss_pred             eEEEEEEeeCCCcHHHHHh------hc-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEECC-CCCEEE
Confidence            37788888874 5544443      22 47888999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +|||+++....  ......+++..|+||
T Consensus       140 ~d~g~~~~~~~~~~~~~~~~~~~~y~~P  167 (274)
T cd06609         140 ADFGVSGQLTSTMSKRNTFVGTPFWMAP  167 (274)
T ss_pred             cccccceeecccccccccccCCccccCh
Confidence            99999874321  223456778888887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.70  E-value=8.7e-09  Score=104.03  Aligned_cols=141  Identities=15%  Similarity=0.119  Sum_probs=91.7

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+...........-.+|  ++..+ +|+||++....|           ...    -+++.+++++. .++..++.
T Consensus        49 ~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~  113 (304)
T cd05101          49 TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC-----------TQD----GPLYVIVEYASKGNLREYLR  113 (304)
T ss_pred             eEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEE-----------ecC----CceEEEEecCCCCcHHHHHH
Confidence            5677776532211111112233  56666 799999765544           111    23678899986 57777776


Q ss_pred             hHHhhh----------hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC
Q psy17422        427 LQQLYR----------DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS  495 (512)
Q Consensus       427 L~~iy~----------~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~  495 (512)
                      .+....          .....+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlk-----p~Nili~~-~~~~kl~D~g~~~~~  187 (304)
T cd05101         114 ARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLA-----ARNVLVTE-NNVMKIADFGLARDV  187 (304)
T ss_pred             hcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccc-----cceEEEcC-CCcEEECCCccceec
Confidence            432110          11235667788899999999999 99999999999     99999964 588999999998732


Q ss_pred             CC----CCccCeeeeeeeccC
Q psy17422        496 HE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       496 ~~----~~~t~yv~tr~YraP  512 (512)
                      ..    .......+++.|+||
T Consensus       188 ~~~~~~~~~~~~~~~~~y~aP  208 (304)
T cd05101         188 NNIDYYKKTTNGRLPVKWMAP  208 (304)
T ss_pred             ccccccccccCCCCCceeeCc
Confidence            21    111223345668887

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=98.70  E-value=7.1e-09  Score=103.37  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=84.2

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhh-----------hccCCChH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYR-----------DQAGRDAD  440 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~-----------~ka~~d~~  440 (512)
                      +++.++|+||++....+.           .    .-+.+.+++++. .++..++.......           .+...+..
T Consensus        60 ~l~~l~h~niv~~~~~~~-----------~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (283)
T cd05090          60 LMAELHHPNIVCLLGVVT-----------Q----EQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHG  124 (283)
T ss_pred             HHhhCCCCCeeeEEEEEe-----------c----CCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHH
Confidence            688899999997655441           1    123678899887 57777765432110           12235677


Q ss_pred             HHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        441 VIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       441 ~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      .+..++.|++.++.+ |.++|+|+|+|     |+|+++.. .+.+|++|||+++....    .......++..|+||
T Consensus       125 ~~~~i~~~i~~al~~lH~~~i~H~dlk-----p~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05090         125 DFLHIAIQIAAGMEYLSSHFFVHKDLA-----ARNILIGE-QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPP  195 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeehhccc-----cceEEEcC-CCcEEeccccccccccCCcceecccCCCccceecCh
Confidence            888899999999999 99999999999     99999975 47899999999873211    112233445667776

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.70  E-value=8.1e-09  Score=102.35  Aligned_cols=149  Identities=27%  Similarity=0.320  Sum_probs=104.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       ..|+|.+............ .+|  +++.++|+|++...+.+.          . .    
T Consensus        13 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~----------~-~----   70 (283)
T cd05118          13 GVVYKARDKLTGE-------IVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFR----------H-K----   70 (283)
T ss_pred             ceEEEEEcCCCCc-------EEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhc----------c-C----
Confidence            4566776666666       6788876544322122222 333  677888999986554441          1 1    


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.+++++..++..++.-.     ....+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+|+
T Consensus        71 ~~~~~v~e~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~-----p~nili~~-~~~~~l  139 (283)
T cd05118          71 GDLYLVFEFMDTDLYKLIKDR-----QRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLK-----PENLLINT-EGVLKL  139 (283)
T ss_pred             CCEEEEEeccCCCHHHHHHhh-----cccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcC-----HHHEEECC-CCcEEE
Confidence            127788999887665554321     1346788899999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||.+....  ....+.++++.+|+||
T Consensus       140 ~df~~~~~~~~~~~~~~~~~~~~~~~~P  167 (283)
T cd05118         140 ADFGLARSFGSPVRPYTHYVVTRWYRAP  167 (283)
T ss_pred             eeeeeeEecCCCcccccCccCcccccCc
Confidence            9999986322  2234556788899988

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.70  E-value=8.6e-09  Score=100.62  Aligned_cols=150  Identities=17%  Similarity=0.221  Sum_probs=100.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++..+.+|.       .+|+|.+....... ....-.+|  +++.++|+|++...+.|          .+.     
T Consensus        14 ~~v~~~~~~~~~~-------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~~~-----   71 (256)
T cd08529          14 GVVFKVVRKADKR-------VYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESF----------LDK-----   71 (256)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeee----------ccC-----
Confidence            4566666666666       67777654321111 11111233  57888999998655444          111     


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -..+.+++++. .++..++.-.    .....+...+..++.+++.++.+ |..+|+|+|++     |+||++.. .+.++
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~-----~~nili~~-~~~~~  141 (256)
T cd08529          72 GKLNIVMEYAENGDLHKLLKMQ----RGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIK-----SLNLFLDA-YDNVK  141 (256)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----cceEEEeC-CCCEE
Confidence            13778899886 5665655421    12346778888999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...  ........++.+|+||
T Consensus       142 l~df~~~~~~~~~~~~~~~~~~~~~y~aP  170 (256)
T cd08529         142 IGDLGVAKLLSDNTNFANTIVGTPYYLSP  170 (256)
T ss_pred             EcccccceeccCccchhhccccCccccCH
Confidence            99999987322  2222345677888887

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0603|consensus

Probab=98.70  E-value=1e-08  Score=109.94  Aligned_cols=147  Identities=14%  Similarity=0.105  Sum_probs=103.5

Q ss_pred             CcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        330 PSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       330 ~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      ++++..|.+..+.+       ..|+|.+.+.-  .....++.-.+..-+|||++++.+++               ...+-
T Consensus       335 ~s~~~~~~~~~t~~-------~~~vkii~~~~--~~~~~e~~~~~~~~~h~niv~~~~v~---------------~~~~~  390 (612)
T KOG0603|consen  335 FSAVKYCESSPTDQ-------EPAVKIISKRA--DDNQDEIPISLLVRDHPNIVKSHDVY---------------EDGKE  390 (612)
T ss_pred             ccceeeeecccccc-------chhheeccccc--cccccccchhhhhcCCCcceeeccee---------------cCCce
Confidence            47788888888888       88999987651  11111122234445899999988887               12233


Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      ++.++++|....    .|..+...+  ....+...++.+++.++.+ |..+|+|||+|     |+||++....+.++++|
T Consensus       391 ~~~v~e~l~g~e----ll~ri~~~~--~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLk-----p~NIL~~~~~g~lrlty  459 (612)
T KOG0603|consen  391 IYLVMELLDGGE----LLRRIRSKP--EFCSEASQWAAELVSAVDYLHEQGVVHRDLK-----PGNILLDGSAGHLRLTY  459 (612)
T ss_pred             eeeeehhccccH----HHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHhcCeeecCCC-----hhheeecCCCCcEEEEE
Confidence            889999997542    122322222  2235666789999999999 99999999999     99999954568899999


Q ss_pred             CCCCCCCCCCCccCeeeeeeeccC
Q psy17422        489 FGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ||.++..+.+ +..-+-|+-|.||
T Consensus       460 FG~a~~~~~~-~~tp~~t~~y~AP  482 (612)
T KOG0603|consen  460 FGFWSELERS-CDTPALTLQYVAP  482 (612)
T ss_pred             echhhhCchh-hcccchhhcccCh
Confidence            9999866554 3334567777777

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.69  E-value=1.1e-08  Score=100.99  Aligned_cols=150  Identities=18%  Similarity=0.191  Sum_probs=99.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCch---H-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPS---S-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~---~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.++.+|.       .+|+|.+.........+.   . .+|  +++.++|+||+.....+          .+.+.
T Consensus        16 g~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~----------~~~~~   78 (264)
T cd06653          16 GEVYLCYDADTGR-------ELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCL----------RDPEE   78 (264)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEE----------EcCCC
Confidence            4566777766776       778876532111111111   1 123  68888999998655443          11111


Q ss_pred             CCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        405 NGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                      .   -++.+++++.. ++.+++      ......+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++
T Consensus        79 ~---~~~~v~e~~~~~~L~~~~------~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~-----p~ni~i~~-~~  143 (264)
T cd06653          79 K---KLSIFVEYMPGGSIKDQL------KAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIK-----GANILRDS-AG  143 (264)
T ss_pred             C---EEEEEEEeCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEEcC-CC
Confidence            1   15567777764 444444      333346777888999999999999 99999999999     99999864 57


Q ss_pred             eEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      .++++|||+++...     ....+.+.++..|+||
T Consensus       144 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  178 (264)
T cd06653         144 NVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSP  178 (264)
T ss_pred             CEEECccccccccccccccCccccccCCcccccCH
Confidence            89999999987321     2233457788889987

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.69  E-value=1.2e-08  Score=104.58  Aligned_cols=148  Identities=20%  Similarity=0.237  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC------------CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT------------TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKA  395 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~------------~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~a  395 (512)
                      +.|+++.++..|.       .+|+|.+.......            ..... .+|  +++.++|+||+...+.|.     
T Consensus        23 g~vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----   90 (335)
T PTZ00024         23 GKVEKAYDTLTGK-------IVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYV-----   90 (335)
T ss_pred             eeEEEEEECCCCC-------eEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEe-----
Confidence            5567777666666       77888765432111            00111 233  688899999998766552     


Q ss_pred             hhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccc
Q psy17422        396 VKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASF  474 (512)
Q Consensus       396 lk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~n  474 (512)
                            .+.    .++.++++|..++..++.      .+...+...+..++.|++.++.+ |..+|+|+||+     |+|
T Consensus        91 ------~~~----~~~lv~e~~~~~l~~~l~------~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~-----~~n  149 (335)
T PTZ00024         91 ------EGD----FINLVMDIMASDLKKVVD------RKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLS-----PAN  149 (335)
T ss_pred             ------cCC----cEEEEEeccccCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccc-----HHH
Confidence                  111    267889999877655543      33457788999999999999999 99999999999     999


Q ss_pred             ccccCCCCeEEEecCCCCCCCC----------------CCCccCeeeeeeeccC
Q psy17422        475 IHVNESKLVLKLCDFGSASWSH----------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       475 Ill~~~~~~~Kl~DfGlar~~~----------------~~~~t~yv~tr~YraP  512 (512)
                      |++.. ++.+|++|||+++...                ....+...++.+|+||
T Consensus       150 ill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  202 (335)
T PTZ00024        150 IFINS-KGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAP  202 (335)
T ss_pred             eEECC-CCCEEECCccceeecccccccccccccccccccccccccccccCCCCC
Confidence            99875 5889999999876221                1123344567788887

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.69  E-value=7.9e-09  Score=102.07  Aligned_cols=152  Identities=16%  Similarity=0.193  Sum_probs=99.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.....+.       .+|+|.+.....  . ... .+|  ++..+ +|+|+++....|.          .....+
T Consensus        20 g~vy~~~~~~~~~-------~~aik~~~~~~~--~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~----------~~~~~~   79 (272)
T cd06637          20 GQVYKGRHVKTGQ-------LAAIKVMDVTGD--E-EEEIKQEINMLKKYSHHRNIATYYGAFI----------KKNPPG   79 (272)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEEcCCc--c-HHHHHHHHHHHHHhcCCCCeeeEeeEEe----------ecCCCC
Confidence            4455555555555       778887643211  1 112 222  45555 6999997766551          111011


Q ss_pred             -CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        407 -NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       407 -~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                       ...++.+++++.. ++..++.-.    .........+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~----~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~-----~~nili~~-~~~  149 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLIKNT----KGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIK-----GQNVLLTE-NAE  149 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC-----HHHEEECC-CCC
Confidence             1236788999874 555554321    12235677888899999999999 99999999999     99999975 588


Q ss_pred             EEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...  ........++..|+||
T Consensus       150 ~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aP  180 (272)
T cd06637         150 VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAP  180 (272)
T ss_pred             EEEccCCCceecccccccCCcccccccccCH
Confidence            9999999987322  2233456788889887

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=98.69  E-value=1e-08  Score=104.28  Aligned_cols=133  Identities=11%  Similarity=0.082  Sum_probs=86.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.....|...   +..+|+|.+..... ...... .+|  +++.++|+||+.....++          .   .  
T Consensus        21 g~Vy~~~~~~~~~~~---~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~g~~~----------~---~--   81 (316)
T cd05108          21 GTVYKGLWIPEGEKV---KIPVAIKELREATS-PKANKEILDEAYVMASVDNPHVCRLLGICL----------T---S--   81 (316)
T ss_pred             ceEEEEEEecCCCcc---ceeEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEc----------C---C--
Confidence            556666655455411   12367777643211 111122 222  688889999997655441          1   1  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       ....++++|. .++..++.-     .+...+...+..++.|++.++.| |..+|+|+|+|     |+||++.. .+.+|
T Consensus        82 -~~~~v~e~~~~g~l~~~l~~-----~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlk-----p~Nill~~-~~~~k  149 (316)
T cd05108          82 -TVQLITQLMPFGCLLDYVRE-----HKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLA-----ARNVLVKT-PQHVK  149 (316)
T ss_pred             -CceeeeecCCCCCHHHHHHh-----ccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccc-----hhheEecC-CCcEE
Confidence             1345667765 344444431     12346777888899999999999 99999999999     99999975 47899


Q ss_pred             EecCCCCCC
Q psy17422        486 LCDFGSASW  494 (512)
Q Consensus       486 l~DfGlar~  494 (512)
                      ++|||+++.
T Consensus       150 l~DfG~a~~  158 (316)
T cd05108         150 ITDFGLAKL  158 (316)
T ss_pred             Ecccccccc
Confidence            999999873

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=98.69  E-value=7e-09  Score=102.14  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=101.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++....+|.       .+|+|.+....... ..... .+|  +++.++|||+++..+.|.           .. . 
T Consensus        16 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~-~-   75 (267)
T cd08228          16 SEVYRATCLLDRK-------PVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFI-----------ED-N-   75 (267)
T ss_pred             eeEEEEEEeCCCC-------EEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEE-----------EC-C-
Confidence            4567777776776       78888664321111 11111 233  688889999997665541           11 1 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.-..  ..+...+...+..++.|++.++.+ |.++|+|+|++     |+||++.. ++.+
T Consensus        76 --~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~-----~~nil~~~-~~~~  145 (267)
T cd08228          76 --ELNIVLELADAGDLSQMIKYFK--KQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIK-----PANVFITA-TGVV  145 (267)
T ss_pred             --eEEEEEEecCCCcHHHHHHHhh--hccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCC-----HHHEEEcC-CCCE
Confidence              26788888874 5555543211  122346778889999999999999 99999999999     99999965 4789


Q ss_pred             EEecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +++|||+++....  .......++..|+||
T Consensus       146 ~l~d~g~~~~~~~~~~~~~~~~~~~~~~aP  175 (267)
T cd08228         146 KLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  175 (267)
T ss_pred             EECccccceeccchhHHHhcCCCCccccCh
Confidence            9999999874321  122344677778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.69  E-value=1.1e-08  Score=100.58  Aligned_cols=148  Identities=16%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.+..++.       .+|+|.+.+... ....... .+|  +++.++|+||+...+.|           ...   
T Consensus         7 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~---   65 (262)
T cd05572           7 GRVELVKVKSKNR-------TFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTF-----------KDK---   65 (262)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeE-----------EcC---
Confidence            3455566655555       777777654321 1111122 222  67888999999765544           111   


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.+++++. .++..++      +.........+..++.|++.++.+ |..+++|+|++     |.||++.. ++.+
T Consensus        66 -~~~~lv~e~~~~~~L~~~l------~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~-----~~nilv~~-~~~~  132 (262)
T cd05572          66 -KYIYMLMEYCLGGELWTIL------RDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLK-----PENLLLDS-NGYV  132 (262)
T ss_pred             -CccEEEEecCCCCcHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC-----HHHEEEcC-CCCE
Confidence             12678889886 4444443      333346778889999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCCCC-CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHEN-EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~-~~t~yv~tr~YraP  512 (512)
                      +++|||+++..... ....++++..|+||
T Consensus       133 ~l~df~~~~~~~~~~~~~~~~~~~~~~~P  161 (262)
T cd05572         133 KLVDFGFAKKLKSGQKTWTFCGTPEYVAP  161 (262)
T ss_pred             EEeeCCcccccCcccccccccCCcCccCh
Confidence            99999998743322 22345677888887

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.69  E-value=1.5e-08  Score=98.80  Aligned_cols=141  Identities=18%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++|+|++.....+           ..    ...++.+++++. .++..++.-
T Consensus        25 ~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----------~~----~~~~~lv~e~~~~~~L~~~l~~   89 (262)
T cd00192          25 EVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVC-----------TE----EEPLYLVLEYMEGGDLLDYLRK   89 (262)
T ss_pred             eEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeee-----------cC----CCceEEEEEeccCCcHHHHHhh
Confidence            6777777654332211111223  57778899998765544           11    123788899985 566666542


Q ss_pred             HHhh---hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CC
Q psy17422        428 QQLY---RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NE  499 (512)
Q Consensus       428 ~~iy---~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~  499 (512)
                      ..-.   ......+...+..++.|++.++.+ |..+|+|+||+     |+||++... +.+|++|||.++....    ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~-----p~nili~~~-~~~~l~dfg~~~~~~~~~~~~~  163 (262)
T cd00192          90 SRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLA-----ARNCLVGED-LVVKISDFGLSRDVYDDDYYRK  163 (262)
T ss_pred             ccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccC-----cceEEECCC-CcEEEccccccccccccccccc
Confidence            2100   002457888999999999999999 99999999999     999999754 8899999999874322    11


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....++..|+||
T Consensus       164 ~~~~~~~~~y~aP  176 (262)
T cd00192         164 KTGGKLPIRWMAP  176 (262)
T ss_pred             ccCCCcCccccCH
Confidence            2344566677777

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0607|consensus

Probab=98.69  E-value=2e-08  Score=99.77  Aligned_cols=148  Identities=18%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      .+|--|..=.+|.       +-|+|.|.+.  ++..-+. +||  +|... .|+||+++.+-|           +.+.. 
T Consensus        92 asVqtcv~i~t~~-------EYAVKiidKq--~gHsR~RvfREVe~f~~Cqgh~nilqLiefF-----------Edd~~-  150 (463)
T KOG0607|consen   92 ASVQTCVSIQTGK-------EYAVKIIDKQ--PGHSRSRVFREVETFYQCQGHKNILQLIEFF-----------EDDTR-  150 (463)
T ss_pred             eeeeeeeeeccch-------hhhhhhhhcC--CchHHHHHHHHHHHHHHhcCCccHHHHHHHh-----------cccce-
Confidence            3455556666666       7899998763  3333333 466  45554 488998765544           44333 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC--Ce
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK--LV  483 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~--~~  483 (512)
                         .+.+++-|....    -|++|-+.+ -+.+.+....++++..+|.+ |.++|.|||+|     |+||+....+  +.
T Consensus       151 ---FYLVfEKm~GGp----lLshI~~~~-~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlK-----PENiLC~~pn~vsP  217 (463)
T KOG0607|consen  151 ---FYLVFEKMRGGP----LLSHIQKRK-HFNEREASRVVKDIASALDFLHTKGIAHRDLK-----PENILCESPNKVSP  217 (463)
T ss_pred             ---EEEEEecccCch----HHHHHHHhh-hccHHHHHHHHHHHHHHHHHHhhcCcccccCC-----ccceeecCCCCcCc
Confidence               889999998543    123332222 25667788888999999999 99999999999     9999986554  46


Q ss_pred             EEEecCCCCCCC----C-----CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS----H-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~----~-----~~~~t~yv~tr~YraP  512 (512)
                      +|||||-++...    +     ...+.+-||+--||||
T Consensus       218 vKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAP  255 (463)
T KOG0607|consen  218 VKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAP  255 (463)
T ss_pred             eeeeccccccccccCCCCCCCCCccccCcccchhhcch
Confidence            899999775411    1     1125567888899998

>KOG0671|consensus

Probab=98.69  E-value=1.2e-08  Score=103.38  Aligned_cols=155  Identities=21%  Similarity=0.272  Sum_probs=102.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      |.|.+|.+.+++.       .+|+|-++..-. ...+..+ -++|+.++..-   -+..||.+ . +..+.+-.++    
T Consensus       103 GkV~ec~D~~~~~-------~vAlKIik~V~k-YreAa~iEi~vLqki~~~D---P~g~~rcv-~-m~~wFdyrgh----  165 (415)
T KOG0671|consen  103 GKVVECWDRETKE-------HVALKIIKNVDK-YREAALIEIEVLQKINESD---PNGKFRCV-Q-MRDWFDYRGH----  165 (415)
T ss_pred             cceEEEeecCCCc-------eehHHHHHHHHH-HhhHHHHHHHHHHHHHhcC---CCCceEEE-e-eehhhhccCc----
Confidence            8899999999977       899888764321 1111111 11344332100   01122211 1 1111122222    


Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--------
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--------  480 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--------  480 (512)
                      ++.+++-|..++..+++-.+.    ......+|+.+.+|+++++.+ |.++++|-|+|     |+||++...        
T Consensus       166 iCivfellG~S~~dFlk~N~y----~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLK-----PENILfvss~~~~~~~~  236 (415)
T KOG0671|consen  166 ICIVFELLGLSTFDFLKENNY----IPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLK-----PENILFVSSEYFKTYNP  236 (415)
T ss_pred             eEEEEeccChhHHHHhccCCc----cccchHHHHHHHHHHHHHHHHHHhcceeecCCC-----hheEEEeccceEEEecc
Confidence            778889998888888764332    246788999999999999999 99999999999     999997522        


Q ss_pred             -----------CCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        481 -----------KLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 -----------~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                                 +..++++|||.|+.+.+.. +..|.||-||||
T Consensus       237 k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h-s~iVsTRHYRAP  278 (415)
T KOG0671|consen  237 KKKVCFIRPLKSTAIKVIDFGSATFDHEHH-STIVSTRHYRAP  278 (415)
T ss_pred             CCccceeccCCCcceEEEecCCcceeccCc-ceeeeccccCCc
Confidence                       1247899999999654432 677999999999

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.69  E-value=8.6e-09  Score=102.52  Aligned_cols=119  Identities=16%  Similarity=0.149  Sum_probs=84.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhh----------ccCCChHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRD----------QAGRDADV  441 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~----------ka~~d~~~  441 (512)
                      ++..++|+||+.....+           ..    .-+.+.+++++. .++..++........          ....+...
T Consensus        61 ~l~~l~h~~i~~~~~~~-----------~~----~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (283)
T cd05048          61 LMSDLQHPNIVCLLGVC-----------TK----EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSD  125 (283)
T ss_pred             HHHhcCCcccceEEEEE-----------cC----CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHH
Confidence            57788999998655443           11    124678888886 566666653221111          12366778


Q ss_pred             HHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        442 IYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       442 v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      +..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++...    .......+++..|+||
T Consensus       126 ~~~~~~~l~~al~~lH~~~i~H~dlk-----p~Nil~~~-~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05048         126 FLHIAIQIAAGMEYLSSHHFVHRDLA-----ARNCLVGE-GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPP  195 (283)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccccc-----cceEEEcC-CCcEEECCCcceeeccccccccccCCCcccccccCH
Confidence            88999999999999 99999999999     99999975 4789999999987321    1122345667889888

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>PHA02988 hypothetical protein; Provisional

Probab=98.68  E-value=8.6e-09  Score=103.50  Aligned_cols=138  Identities=11%  Similarity=-0.080  Sum_probs=94.2

Q ss_pred             HhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        351 EEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      .+|+|.+....... .+... .+|  +|..++||||++....|+          +. ..+...+..++++|.. ++..++
T Consensus        45 ~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~----------~~-~~~~~~~~lv~Ey~~~g~L~~~l  113 (283)
T PHA02988         45 EVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFII----------DI-VDDLPRLSLILEYCTRGYLREVL  113 (283)
T ss_pred             EEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEE----------ec-ccCCCceEEEEEeCCCCcHHHHH
Confidence            78888876532211 11111 244  688899999997765552          10 0112237789999985 555554


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCe
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPY  503 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~y  503 (512)
                      .      +....+......++.+++.++.+ |. .+++|||||     |+|+++.. ++.+|++|||+++...... ...
T Consensus       114 ~------~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlk-----p~nill~~-~~~~kl~dfg~~~~~~~~~-~~~  180 (283)
T PHA02988        114 D------KEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLT-----SVSFLVTE-NYKLKIICHGLEKILSSPP-FKN  180 (283)
T ss_pred             h------hCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCC-----hhhEEECC-CCcEEEcccchHhhhcccc-ccc
Confidence            3      23346677778899999999999 97 589999999     99999975 4889999999987432221 234


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      ++|..|+||
T Consensus       181 ~~~~~y~aP  189 (283)
T PHA02988        181 VNFMVYFSY  189 (283)
T ss_pred             cCcccccCH
Confidence            677888887

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=98.68  E-value=9.2e-09  Score=102.49  Aligned_cols=154  Identities=17%  Similarity=0.170  Sum_probs=100.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.....   ......+ +|  ++..+ +|+||+.....++          ..+...
T Consensus        32 ~~vy~~~~~~~~~-------~~~ik~~~~~---~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~----------~~~~~~   91 (286)
T cd06638          32 GKVFKVLNKKNGS-------KAAVKILDPI---HDIDEEIEAEYNILKALSDHPNVVKFYGMYY----------KKDVKN   91 (286)
T ss_pred             cEEEEEEECCCCc-------eeEEEeeccc---cchHHHHHHHHHHHHHHhcCCCeeeeeeeee----------ecccCC
Confidence            4566666766666       6777765321   1112222 22  45566 6999997665542          111011


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      .-.++.+++++. .++.+++.-.  ...+...+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. .+.+
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~nili~~-~~~~  163 (286)
T cd06638          92 GDQLWLVLELCNGGSVTDLVKGF--LKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVK-----GNNILLTT-EGGV  163 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHHh--hccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCC-----HHhEEECC-CCCE
Confidence            113678899987 4565555321  1122346778888999999999999 99999999999     99999975 4789


Q ss_pred             EEecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....  ......+++..|+||
T Consensus       164 kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  193 (286)
T cd06638         164 KLVDFGVSAQLTSTRLRRNTSVGTPFWMAP  193 (286)
T ss_pred             EEccCCceeecccCCCccccccCCCcccCh
Confidence            9999999874321  122345688889887

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.68  E-value=1e-08  Score=100.42  Aligned_cols=148  Identities=14%  Similarity=0.148  Sum_probs=97.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       ..|+|.+..... .....-.+|  +++.++|+|+++....+          . .. .   
T Consensus        17 ~~v~~~~~~~~~~-------~~~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~----------~-~~-~---   73 (262)
T cd06613          17 GDVYKARDIATGE-------LVAIKVIKLEPG-DDFEIIQQEISMLKECRHPNIVAYFGSY----------L-RR-D---   73 (262)
T ss_pred             eEEEEeEecCCCC-------EEEEEEEEcCch-hhHHHHHHHHHHHHhCCCCChhceEEEE----------E-eC-C---
Confidence            4455555555554       566666543211 111111233  67888999999755443          1 11 1   


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++...     ....+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+|+
T Consensus        74 ~~~l~~e~~~~~~l~~~~~~~-----~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~-----p~ni~i~~-~~~~~l  142 (262)
T cd06613          74 KLWIVMEYCGGGSLQDIYQVT-----RGPLSELQIAYVCRETLKGLAYLHETGKIHRDIK-----GANILLTE-DGDVKL  142 (262)
T ss_pred             EEEEEEeCCCCCcHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCC-----hhhEEECC-CCCEEE
Confidence            27788898875 444443221     1457888999999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||++....  ......++++..|+||
T Consensus       143 ~d~g~~~~~~~~~~~~~~~~~~~~y~~P  170 (262)
T cd06613         143 ADFGVSAQLTATIAKRKSFIGTPYWMAP  170 (262)
T ss_pred             CccccchhhhhhhhccccccCCccccCc
Confidence            9999986322  1223445677788887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.68  E-value=1e-08  Score=105.18  Aligned_cols=142  Identities=16%  Similarity=0.112  Sum_probs=90.6

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      ..+|+|.+...........-.+|  ++..+ +|+||+.....|.           .    .-+++.+++++. .++..++
T Consensus        45 ~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~-----------~----~~~~~lv~e~~~~g~L~~~l  109 (334)
T cd05100          45 VTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACT-----------Q----DGPLYVLVEYASKGNLREYL  109 (334)
T ss_pred             eeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEc-----------c----CCceEEEEecCCCCcHHHHH
Confidence            35677755432211111111233  56666 7999997666551           1    124778888886 5777776


Q ss_pred             HhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        426 ALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       426 ~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ....-.          ......+...+..++.|++.++.+ |.++|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlk-----p~Nill~~-~~~~kL~Dfg~~~~  183 (334)
T cd05100         110 RARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLA-----ARNVLVTE-DNVMKIADFGLARD  183 (334)
T ss_pred             HhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccc-----cceEEEcC-CCcEEECCccccee
Confidence            532110          011235667788899999999999 99999999999     99999975 48899999999874


Q ss_pred             CCCC----CccCeeeeeeeccC
Q psy17422        495 SHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       495 ~~~~----~~t~yv~tr~YraP  512 (512)
                      ....    ......++..|+||
T Consensus       184 ~~~~~~~~~~~~~~~~~~y~aP  205 (334)
T cd05100         184 VHNIDYYKKTTNGRLPVKWMAP  205 (334)
T ss_pred             cccccccccccCCCcCceEcCH
Confidence            3211    11122234568877

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.67  E-value=1.2e-08  Score=99.47  Aligned_cols=143  Identities=13%  Similarity=0.108  Sum_probs=98.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|..+.+..+|.       .+|+|.+....   ....+.+.+. ...|||++...+.|          .+.     ...
T Consensus         7 ~~v~~~~~~~~~~-------~~~~K~i~~~~---~~~~~~~~~~-~~~~~~i~~~~~~~----------~~~-----~~~   60 (237)
T cd05576           7 DKVLLVMDTRTQQ-------TFILKGLRKSS---EYSRERLTII-PHCVPNMVCLHKYI----------VSE-----DSV   60 (237)
T ss_pred             ceEEEEEEccCCc-------EEEEEeecchh---hhhhHHHHHH-hcCCCceeehhhhe----------ecC-----CeE
Confidence            4567777888887       78888876531   2222233333 33588998655544          111     237


Q ss_pred             eEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      +.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+++.|
T Consensus        61 ~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~~l~d  128 (237)
T cd05576          61 FLVLQHAEGGKLWSHIS------KFLNIPEECVKRWAAEMVVALDALHREGIVCRDLN-----PNNILLDD-RGHIQLTY  128 (237)
T ss_pred             EEEEecCCCCCHHHHHH------HhcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----HHHEEEcC-CCCEEEec
Confidence            889999874 5555543      22346788899999999999999 99999999999     99999875 57899999


Q ss_pred             CCCCCCCCCCCccCeeeeeeeccC
Q psy17422        489 FGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ||.+...... .....++..|+||
T Consensus       129 f~~~~~~~~~-~~~~~~~~~y~aP  151 (237)
T cd05576         129 FSRWSEVEDS-CDGEAVENMYCAP  151 (237)
T ss_pred             ccchhccccc-cccCCcCccccCC
Confidence            9987633221 2234456677777

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1187|consensus

Probab=98.67  E-value=1.8e-08  Score=105.15  Aligned_cols=135  Identities=19%  Similarity=0.115  Sum_probs=91.7

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|++.......  ..+ ..|  ++..++|||++++-...          .+.  .+  ....+.|+|.. ++...+.
T Consensus       101 ~vAVK~~~~~~~~~--~~eF~~Ei~~ls~l~H~Nlv~LlGyC----------~e~--~~--~~~LVYEym~nGsL~d~L~  164 (361)
T KOG1187|consen  101 VVAVKRLSSNSGQG--EREFLNEVEILSRLRHPNLVKLLGYC----------LEG--GE--HRLLVYEYMPNGSLEDHLH  164 (361)
T ss_pred             EEEEEEecCCCCcc--hhHHHHHHHHHhcCCCcCcccEEEEE----------ecC--Cc--eEEEEEEccCCCCHHHHhC
Confidence            78999655432211  122 344  68889999999876544          111  11  25688999984 5444432


Q ss_pred             hHHhhhhcc-CCChHHHHHHHHHHHHHhCC-CCC---CCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC-CC-
Q psy17422        427 LQQLYRDQA-GRDADVIYRRAQQLLHQLGQ-PSS---AITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE-NE-  499 (512)
Q Consensus       427 L~~iy~~ka-~~d~~~v~~~~~qlL~~l~~-h~~---~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~-~~-  499 (512)
                      .     ... ..+...=..++.++.+||.| |..   .|+|||||     ++||+++. ....|++|||+|+..+. .. 
T Consensus       165 ~-----~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiK-----ssNILLD~-~~~aKlsDFGLa~~~~~~~~~  233 (361)
T KOG1187|consen  165 G-----KKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIK-----SSNILLDE-DFNAKLSDFGLAKLGPEGDTS  233 (361)
T ss_pred             C-----CCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCC-----HHHeeECC-CCCEEccCccCcccCCccccc
Confidence            2     111 45666666788889999999 874   49999999     99999985 48899999999986654 22 


Q ss_pred             ccCe-eeeeeeccC
Q psy17422        500 ITPY-LVSRFYRAP  512 (512)
Q Consensus       500 ~t~y-v~tr~YraP  512 (512)
                      ...- .||..|.||
T Consensus       234 ~~~~~~gt~gY~~P  247 (361)
T KOG1187|consen  234 VSTTVMGTFGYLAP  247 (361)
T ss_pred             eeeecCCCCccCCh
Confidence            2222 789999998

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.67  E-value=9.3e-09  Score=100.86  Aligned_cols=148  Identities=18%  Similarity=0.122  Sum_probs=100.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.++.       .+|+|.+.+... ....... .+|  +++.++||||+.....|          .. . . 
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~~-~-~-   73 (258)
T cd05578          14 GKVCIVQKRDTKK-------MFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSF----------QD-E-E-   73 (258)
T ss_pred             ceEEEEEEccCCc-------EEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhh----------cC-C-C-
Confidence            5677777777777       788887754321 1111122 233  67889999998533322          21 1 1 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+
T Consensus        74 --~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~-----~~nil~~~-~~~~  139 (258)
T cd05578          74 --NMYLVVDLLLGGDLRYHLS------QKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIK-----PDNILLDE-QGHV  139 (258)
T ss_pred             --eEEEEEeCCCCCCHHHHHH------hcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----HHHeEEcC-CCCE
Confidence              27788898864 5544443      22357788899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +++|||.+.... ........++..|+||
T Consensus       140 ~l~d~~~~~~~~~~~~~~~~~~~~~y~~P  168 (258)
T cd05578         140 HITDFNIATKVTPDTLTTSTSGTPGYMAP  168 (258)
T ss_pred             EEeecccccccCCCccccccCCChhhcCH
Confidence            999999976322 1122334566667776

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.67  E-value=1.2e-08  Score=101.61  Aligned_cols=150  Identities=17%  Similarity=0.103  Sum_probs=100.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HH--HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VA--SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~--ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+..... ....... ..  ++++.++|+|++.....|.           ..+  
T Consensus         7 g~vy~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----------~~~--   66 (277)
T cd05577           7 GEVCACQVKATGK-------MYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFE-----------TKD--   66 (277)
T ss_pred             eeEEEEEEcCCCc-------EEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEe-----------cCC--
Confidence            5677777777777       677776643211 1111111 22  3788889999997665551           111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        ..+.+++++.. ++..++.-..    ....+...+..++.|++.++.+ |..+|+|+||+     |.||++.. ++.+
T Consensus        67 --~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~-----p~Nil~~~-~~~~  134 (277)
T cd05577          67 --DLCLVMTLMNGGDLKYHIYNVG----EPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLK-----PENVLLDD-HGNV  134 (277)
T ss_pred             --eEEEEEecCCCCcHHHHHHHcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEECC-CCCE
Confidence              26788999874 5544443111    1246778888999999999999 99999999999     99999975 4789


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      |++|||.++... ........++..|+||
T Consensus       135 ~l~dfg~~~~~~~~~~~~~~~~~~~y~~P  163 (277)
T cd05577         135 RISDLGLAVELKGGKKIKGRAGTPGYMAP  163 (277)
T ss_pred             EEccCcchhhhccCCccccccCCCCcCCH
Confidence            999999986322 2222345566677776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.66  E-value=1.1e-08  Score=101.00  Aligned_cols=128  Identities=13%  Similarity=0.159  Sum_probs=84.4

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc-ceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL-PLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l-Pl~~~lpdm~-~d~~~yv  425 (512)
                      .+|+|.+........-... .+|  +++.++||||++..+.+          ......+.. ....++|++. .++..++
T Consensus        29 ~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (273)
T cd05074          29 KVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVS----------LRSRAKGRLPIPMVILPFMKHGDLHTFL   98 (273)
T ss_pred             EEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEE----------ccCCCCCcccceEEEEecCCCCcHHHHH
Confidence            7788876543221111111 233  67888999998765533          111111112 2356678876 4555565


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .....-......+...+..++.|++.++.+ |.++|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus        99 ~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dik-----p~nili~~-~~~~kl~dfg~~~~  162 (273)
T cd05074          99 LMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLA-----ARNCMLNE-NMTVCVADFGLSKK  162 (273)
T ss_pred             HHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccc-----hhhEEEcC-CCCEEECccccccc
Confidence            433322222346778899999999999999 99999999999     99999965 47899999999873

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=98.66  E-value=1.6e-08  Score=107.00  Aligned_cols=70  Identities=19%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CC--CccCeeeeeeecc
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--EN--EITPYLVSRFYRA  511 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~--~~t~yv~tr~Yra  511 (512)
                      .+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. .+.+|++|||+++...  ..  .....+++..|+|
T Consensus       236 l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlk-----p~NiLl~~-~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  309 (401)
T cd05107         236 LSYMDLVGFSYQVANGMEFLASKNCVHRDLA-----ARNVLICE-GKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMA  309 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCcCcccCC-----cceEEEeC-CCEEEEEecCcceecccccccccCCCcCCCCceeC
Confidence            3455677889999999999 99999999999     99999975 4889999999987321  11  1122345677888


Q ss_pred             C
Q psy17422        512 P  512 (512)
Q Consensus       512 P  512 (512)
                      |
T Consensus       310 P  310 (401)
T cd05107         310 P  310 (401)
T ss_pred             h
Confidence            7

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.66  E-value=5.7e-09  Score=105.11  Aligned_cols=146  Identities=14%  Similarity=0.188  Sum_probs=99.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       .+|+|.+..... .....-.+|  +++.++|+|++...+.|          ...  .   
T Consensus        36 g~v~~~~~~~~~~-------~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~ii~~~~~~----------~~~--~---   92 (292)
T cd06658          36 GIVCIATEKHTGK-------QVAVKKMDLRKQ-QRRELLFNEVVIMRDYHHENVVDMYNSY----------LVG--D---   92 (292)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEecchH-HHHHHHHHHHHHHHhCCCCcHHHHHHhe----------ecC--C---
Confidence            5566666666666       788887643211 000011233  57778999998654443          111  1   


Q ss_pred             ceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++... +..++.       ....+...+..++.|++.++.+ |..+|+|+|||     |+|+++.. ++.+++
T Consensus        93 ~~~lv~e~~~~~~L~~~~~-------~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk-----p~Nill~~-~~~~kL  159 (292)
T cd06658          93 ELWVVMEFLEGGALTDIVT-------HTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIK-----SDSILLTS-DGRIKL  159 (292)
T ss_pred             eEEEEEeCCCCCcHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCC-----HHHEEEcC-CCCEEE
Confidence            268889999754 333331       2236778899999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  .......++++.+|+||
T Consensus       160 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  187 (292)
T cd06658         160 SDFGFCAQVSKEVPKRKSLVGTPYWMAP  187 (292)
T ss_pred             ccCcchhhcccccccCceeecCccccCH
Confidence            999998632  22223457889999988

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG4257|consensus

Probab=98.66  E-value=1.6e-08  Score=107.75  Aligned_cols=123  Identities=14%  Similarity=0.178  Sum_probs=94.6

Q ss_pred             ChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        349 NFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      +..||+|.++....+..-..=+.|  +|+..+||||+++-...                ...|+..+|+... +.+..|+
T Consensus       418 ~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~----------------~e~P~WivmEL~~~GELr~yL  481 (974)
T KOG4257|consen  418 RIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVC----------------VEQPMWIVMELAPLGELREYL  481 (974)
T ss_pred             ceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeee----------------eccceeEEEecccchhHHHHH
Confidence            446899988764333321111455  79999999999887665                1247888988876 5666676


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN  498 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~  498 (512)
                      +     ++|...+...+..|++|+..++.| ++...+||||.     ++||++... ..+|++|||++|..+++
T Consensus       482 q-----~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIA-----aRNiLVsSp-~CVKLaDFGLSR~~ed~  544 (974)
T KOG4257|consen  482 Q-----QNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIA-----ARNILVSSP-QCVKLADFGLSRYLEDD  544 (974)
T ss_pred             H-----hccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhh-----hhheeecCc-ceeeecccchhhhcccc
Confidence            4     345568888999999999999999 99999999999     999999765 68999999999965443

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.65  E-value=1.3e-08  Score=101.07  Aligned_cols=151  Identities=24%  Similarity=0.268  Sum_probs=103.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++....+|.       ..|+|.+............ .+|  +++.++|+|++...+.+.           ..  +.
T Consensus        13 ~~vy~~~~~~~~~-------~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----------~~--~~   72 (287)
T cd07840          13 GQVYKARNKKTGE-------LVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVT-----------SK--GK   72 (287)
T ss_pred             eEEEEEEECCCCe-------EEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEe-----------cC--CC
Confidence            4566666666665       7788887654322333333 333  678889999997665541           11  01


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.+++++..++..++.-     .....+...+..++.|++.++.+ |..+++|+|++     |+|+++.. ++.+|+
T Consensus        73 ~~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~-----p~nil~~~-~~~~~l  141 (287)
T cd07840          73 GSIYMVFEYMDHDLTGLLDS-----PEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIK-----GSNILINN-DGVLKL  141 (287)
T ss_pred             CcEEEEeccccccHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCc-----HHHeEEcC-CCCEEE
Confidence            23778899987655444321     11357888899999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      +|||+++.....   ..+.-.++.+|+||
T Consensus       142 ~d~g~~~~~~~~~~~~~~~~~~~~~y~~P  170 (287)
T cd07840         142 ADFGLARPYTKRNSADYTNRVITLWYRPP  170 (287)
T ss_pred             ccccceeeccCCCcccccccccccccCCc
Confidence            999998732211   23344567788887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.65  E-value=1.8e-08  Score=99.44  Aligned_cols=150  Identities=17%  Similarity=0.166  Sum_probs=99.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCch---H-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPS---S-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~---~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.+..+|.       .+|+|.+...........   . .+|  +++.++|+||+.....|.          ....
T Consensus        16 g~vy~~~~~~~~~-------~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----------~~~~   78 (266)
T cd06651          16 GRVYLCYDVDTGR-------ELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLR----------DRAE   78 (266)
T ss_pred             EEEEEEEEcCCCc-------EEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEE----------cCCC
Confidence            5677777777776       777776643221111111   1 123  688889999987655441          1111


Q ss_pred             CCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        405 NGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                         .-++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++
T Consensus        79 ---~~~~l~~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~-----p~nil~~~-~~  143 (266)
T cd06651          79 ---KTLTIFMEYMPGGSVKDQLK------AYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIK-----GANILRDS-AG  143 (266)
T ss_pred             ---CEEEEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----HHHEEECC-CC
Confidence               125677888864 4544443      22335677888899999999999 99999999999     99999864 57


Q ss_pred             eEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++...     ........++..|+||
T Consensus       144 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  178 (266)
T cd06651         144 NVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSP  178 (266)
T ss_pred             CEEEccCCCccccccccccCCccccCCccccccCH
Confidence            89999999986321     1222334577788887

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.65  E-value=1.5e-08  Score=99.18  Aligned_cols=151  Identities=14%  Similarity=0.146  Sum_probs=100.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+.+.++.++.       .+|+|.+............ .+|  +++.++|+|++.....|          ...+    
T Consensus        14 ~~v~~~~~~~~~~-------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~~~~----   72 (257)
T cd08223          14 GEVSLVRHRTDGK-------QYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESW----------EGED----   72 (257)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeee----------cCCC----
Confidence            4566666666666       6788877542211111111 222  67888999998654433          1111    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+++++. .++..++.-.    .....+...+..++.+++.++.+ |.++|+|+|||     |+||++.. ++.++
T Consensus        73 ~~~~lv~e~~~~~~l~~~l~~~----~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~-----p~nil~~~-~~~~~  142 (257)
T cd08223          73 GLLYIVMGFCEGGDLYHKLKEQ----KGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLK-----TQNVFLTR-TNIIK  142 (257)
T ss_pred             CEEEEEecccCCCcHHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----chhEEEec-CCcEE
Confidence            12678888886 4554444311    11236788899999999999999 99999999999     99999964 58899


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++...  .........++..|+||
T Consensus       143 l~df~~~~~~~~~~~~~~~~~~~~~y~aP  171 (257)
T cd08223         143 VGDLGIARVLENQCDMASTLIGTPYYMSP  171 (257)
T ss_pred             EecccceEEecccCCccccccCCcCccCh
Confidence            9999998632  22233455678888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=98.65  E-value=1.2e-08  Score=101.92  Aligned_cols=147  Identities=20%  Similarity=0.259  Sum_probs=100.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|.++.+..+|.       .+|+|.+..... ...... .+|  ++..++|+||++..+.|.           ..    
T Consensus        19 g~v~~~~~~~~~~-------~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----------~~----   75 (284)
T cd06620          19 GSVSKVKHIPTGT-------VMAKKVVHIGAK-SSVRKQILRELQIMHECRSPYIVSFYGAFL-----------NE----   75 (284)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEEecCc-chHHHHHHHHHHHHHHcCCCCcceEeeeEe-----------cC----
Confidence            5566666666666       667765543211 111222 233  677889999997766551           11    


Q ss_pred             cceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      ..++.+++++... +..++      +.....+...+..++.+++.++.+ |. .+|+|+|++     |+|+++.. ++.+
T Consensus        76 ~~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~-----p~nil~~~-~~~~  143 (284)
T cd06620          76 NNICMCMEFMDCGSLDRIY------KKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIK-----PSNILVNS-RGQI  143 (284)
T ss_pred             CEEEEEEecCCCCCHHHHH------HhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCC-----HHHEEECC-CCcE
Confidence            2378999999854 43333      333346788899999999999999 86 689999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +++|||+++..........+++..|+||
T Consensus       144 ~l~d~gl~~~~~~~~~~~~~~~~~~~aP  171 (284)
T cd06620         144 KLCDFGVSGELINSIADTFVGTSTYMSP  171 (284)
T ss_pred             EEccCCcccchhhhccCccccCcccCCH
Confidence            9999999864322222345778888887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.65  E-value=1.3e-08  Score=102.99  Aligned_cols=137  Identities=14%  Similarity=0.190  Sum_probs=90.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|..+     .+|+|.............-.+|  ++..+ +|+||++..+.|           ..++   
T Consensus        21 g~V~~a~~~~~~~~~-----~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~-----------~~~~---   81 (303)
T cd05088          21 GQVLKARIKKDGLRM-----DAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC-----------EHRG---   81 (303)
T ss_pred             ceEEEEEEccCCcee-----eEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEE-----------CCCC---
Confidence            556667666666411     3455554322111111111223  45666 899999766555           1111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhh----------hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYR----------DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~----------~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                       ..+.+++++. .++..++.-.....          .....+...+..++.|++.++.+ |.++|+|+|||     |+|+
T Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlk-----p~Ni  155 (303)
T cd05088          82 -YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA-----ARNI  155 (303)
T ss_pred             -CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccc-----hheE
Confidence             2678899986 56666665332211          11246788899999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCC
Q psy17422        476 HVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar  493 (512)
                      ++.. ++.+|++|||+++
T Consensus       156 li~~-~~~~kl~dfg~~~  172 (303)
T cd05088         156 LVGE-NYVAKIADFGLSR  172 (303)
T ss_pred             EecC-CCcEEeCccccCc
Confidence            9975 4789999999986

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.65  E-value=1.3e-08  Score=103.37  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh----------hhccCCChH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY----------RDQAGRDAD  440 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy----------~~ka~~d~~  440 (512)
                      +++.+ +|+||++..+.+.           ..    -+++.+++++. .++.+|+....-.          ......+..
T Consensus        70 ~l~~l~~h~~iv~~~~~~~-----------~~----~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~  134 (314)
T cd05099          70 LMKLIGKHKNIINLLGVCT-----------QE----GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFK  134 (314)
T ss_pred             HHHhccCCCCeeeEEEEEc-----------cC----CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHH
Confidence            56666 6999997665551           11    23788899987 5777787543210          011235667


Q ss_pred             HHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        441 VIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       441 ~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .+..++.|++.++.+ |.++|+|+|+|     |+|+++.. ++.+|++|||+++.
T Consensus       135 ~~~~~~~qi~~aL~~lH~~gi~H~dlk-----p~Nill~~-~~~~kL~Dfg~~~~  183 (314)
T cd05099         135 DLVSCAYQVARGMEYLESRRCIHRDLA-----ARNVLVTE-DNVMKIADFGLARG  183 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecccc-----ceeEEEcC-CCcEEEcccccccc
Confidence            788899999999999 99999999999     99999965 58899999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.64  E-value=1.7e-08  Score=99.42  Aligned_cols=128  Identities=11%  Similarity=0.109  Sum_probs=85.8

Q ss_pred             HhHHHHhhhhcCCC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC-CCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG-NGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~-~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      .+|+|.+....... .+..-.+|  +++.++|+||++....+.          .... .+..-...++|++. .++..++
T Consensus        29 ~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~~~~~~~~~~~~~v~e~~~~~~l~~~l   98 (273)
T cd05035          29 KVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCF----------EASSLQKIPKPMVILPFMKHGDLHSFL   98 (273)
T ss_pred             eEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeec----------cCCccccCcccEEEEeccCCCCHHHHH
Confidence            67888765321111 11111233  578889999986544331          1000 01111456788887 4666676


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ............+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|++|||+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl~dfg~~~~  162 (273)
T cd05035          99 LYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLA-----ARNCMLRE-DMTVCVADFGLSKK  162 (273)
T ss_pred             HHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccc-----hheEEECC-CCeEEECCccceee
Confidence            554443333457888899999999999999 99999999999     99999975 47899999999873

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.64  E-value=1.2e-08  Score=101.93  Aligned_cols=152  Identities=18%  Similarity=0.215  Sum_probs=98.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...........-.+|  ++..+ .|+||++....+.           .++   
T Consensus        18 g~vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~-----------~~~---   76 (288)
T cd06616          18 GTVNKMLHKPSGT-------IMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALF-----------REG---   76 (288)
T ss_pred             eEEEEEEECCCCC-------EEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEe-----------cCC---
Confidence            5677777777777       7888877643221111111233  35555 4999997655441           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhh-ccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRD-QAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~-ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       ..+.+++++..+..++...  ++.. ....+...+..++.+++.++.+ |. .+|+|+|||     |+||++.. ++.+
T Consensus        77 -~~~~~~e~~~~~l~~l~~~--~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlk-----p~Nil~~~-~~~~  147 (288)
T cd06616          77 -DCWICMELMDISLDKFYKY--VYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVK-----PSNILLDR-NGNI  147 (288)
T ss_pred             -cEEEEEecccCCHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCC-----HHHEEEcc-CCcE
Confidence             1557778877665544432  1211 2347788899999999999999 86 499999999     99999975 4789


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++... ....+...++..|+||
T Consensus       148 kl~dfg~~~~~~~~~~~~~~~~~~~y~aP  176 (288)
T cd06616         148 KLCDFGISGQLVDSIAKTRDAGCRPYMAP  176 (288)
T ss_pred             EEeecchhHHhccCCccccccCccCccCH
Confidence            999999986321 1122334567778877

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=98.64  E-value=1e-08  Score=103.34  Aligned_cols=146  Identities=16%  Similarity=0.230  Sum_probs=101.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+....... ...-.+|  +++.+.|+|++...+.|.          . . .   
T Consensus        34 ~~v~~~~~~~~~~-------~v~ik~~~~~~~~~-~~~~~~e~~~l~~~~h~~v~~~~~~~~----------~-~-~---   90 (296)
T cd06654          34 GTVYTAMDVATGQ-------EVAIRQMNLQQQPK-KELIINEILVMRENKNPNIVNYLDSYL----------V-G-D---   90 (296)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEecCCcch-HHHHHHHHHHHHhCCCCCEeeEEEEEE----------e-C-C---
Confidence            5677777777777       78888765422111 1111223  678889999997666551          1 1 1   


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++.       +...+...+..++.|++.++.+ |..+|.|+|+|     |+||++.. ++.+|+
T Consensus        91 ~~~lv~e~~~~~~L~~~~~-------~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLk-----p~Nill~~-~~~~kl  157 (296)
T cd06654          91 ELWVVMEYLAGGSLTDVVT-------ETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----SDNILLGM-DGSVKL  157 (296)
T ss_pred             EEEEeecccCCCCHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEEcC-CCCEEE
Confidence            26788999874 4544442       1235777888999999999999 99999999999     99999965 478999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  .......+++..|+||
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  185 (296)
T cd06654         158 TDFGFCAQITPEQSKRSTMVGTPYWMAP  185 (296)
T ss_pred             CccccchhccccccccCcccCCccccCH
Confidence            9999987322  2223345778889887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=98.64  E-value=1.5e-08  Score=99.14  Aligned_cols=137  Identities=17%  Similarity=0.172  Sum_probs=93.9

Q ss_pred             HhHHHHhhhhcC-CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALI-PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~-~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+++|.+..... ......-.+|  +++.++|+||+...+.|.          + . .   .+..+++++. .++..++.
T Consensus        27 ~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~----------~-~-~---~~~~~~e~~~~~~L~~~~~   91 (256)
T cd08221          27 LVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFM----------D-D-N---TLLIEMEYANGGTLYDKIV   91 (256)
T ss_pred             EEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEe----------c-C-C---eEEEEEEecCCCcHHHHHH
Confidence            667776643321 1111111233  688899999997766551          1 1 1   2678888887 45555554


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CCCccCe
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--ENEITPY  503 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~~~t~y  503 (512)
                      ...    ....+...+..++.|++.++.+ |..+++|+|++     |+||++.. ++.+|++|||+++...  .......
T Consensus        92 ~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~-----p~ni~~~~-~~~~kl~d~~~~~~~~~~~~~~~~~  161 (256)
T cd08221          92 RQK----GQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIK-----TLNIFLTK-AGLIKLGDFGISKILGSEYSMAETV  161 (256)
T ss_pred             hcc----ccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC-----hHhEEEeC-CCCEEECcCcceEEccccccccccc
Confidence            221    2346778889999999999999 99999999999     99999975 4889999999987322  1123455


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      +++..|.||
T Consensus       162 ~~~~~y~ap  170 (256)
T cd08221         162 VGTPYYMSP  170 (256)
T ss_pred             CCCccccCH
Confidence            678888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=98.64  E-value=1.8e-08  Score=106.63  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC-CC---CccCeeeeeeecc
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH-EN---EITPYLVSRFYRA  511 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~-~~---~~t~yv~tr~Yra  511 (512)
                      .+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++... ..   ......++..|+|
T Consensus       234 l~~~~~~~~~~qi~~aL~~LH~~~ivH~dik-----p~Nill~~-~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  307 (400)
T cd05105         234 LTTLDLLSFTYQVARGMEFLASKNCVHRDLA-----ARNVLLAQ-GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMA  307 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----hHhEEEeC-CCEEEEEeCCcceeccccccccccCCcCCCcceEC
Confidence            5566778899999999999 99999999999     99999975 4789999999987321 11   1122345667888


Q ss_pred             C
Q psy17422        512 P  512 (512)
Q Consensus       512 P  512 (512)
                      |
T Consensus       308 P  308 (400)
T cd05105         308 P  308 (400)
T ss_pred             h
Confidence            7

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=98.64  E-value=1.9e-08  Score=98.84  Aligned_cols=152  Identities=20%  Similarity=0.224  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++..+.+|.       .+|+|.+.... ........ .+|  +++.++|+|++.....|          ...    
T Consensus        16 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~----------~~~----   74 (267)
T cd08224          16 SVVYKAICLLDGR-------VVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASF----------IEN----   74 (267)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeee----------ecC----
Confidence            5567777776776       77888764311 11111112 233  67888999998665554          111    


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -..+.+++++.. ++.+++.  +....+...+...+..++.+++.++.+ |..+|+|+|++     |+||++.. ++.+
T Consensus        75 -~~~~lv~e~~~~~~L~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~-----p~nil~~~-~~~~  145 (267)
T cd08224          75 -NELNIVLELADAGDLSRMIK--HFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIK-----PANVFITA-TGVV  145 (267)
T ss_pred             -CeEEEEEecCCCCCHHHHHH--HhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcC-----hhhEEECC-CCcE
Confidence             126788999874 6666653  222223446788899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +++|||+++...  ........++..|+||
T Consensus       146 ~l~d~~~~~~~~~~~~~~~~~~~~~~y~ap  175 (267)
T cd08224         146 KLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  175 (267)
T ss_pred             EEeccceeeeccCCCcccceecCCccccCH
Confidence            999999987322  1122345677788887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=98.63  E-value=2.3e-08  Score=99.20  Aligned_cols=142  Identities=13%  Similarity=0.027  Sum_probs=93.5

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      ..+|+|.+...........-.+|  ++..++|+|++.....|.           ..    -.++.+++++. .++..+++
T Consensus        36 ~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~i~  100 (280)
T cd05049          36 ELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCT-----------EG----DPPIMVFEYMEHGDLNKFLR  100 (280)
T ss_pred             ceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEe-----------cC----CCeEEEEecCCCCCHHHHHH
Confidence            36778776543221111111233  688889999987665541           11    12678889887 56666664


Q ss_pred             hHHh--------hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC
Q psy17422        427 LQQL--------YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE  497 (512)
Q Consensus       427 L~~i--------y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~  497 (512)
                      -...        -..........+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++....
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlk-----p~nili~~-~~~~kl~d~g~~~~~~~  174 (280)
T cd05049         101 SHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLA-----TRNCLVGY-DLVVKIGDFGMSRDVYT  174 (280)
T ss_pred             hcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccc-----cceEEEcC-CCeEEECCcccceeccc
Confidence            3211        1112335677888999999999999 99999999999     99999975 48999999999873211


Q ss_pred             ----CCccCeeeeeeeccC
Q psy17422        498 ----NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 ----~~~t~yv~tr~YraP  512 (512)
                          ..-....++..|+||
T Consensus       175 ~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05049         175 TDYYRVGGHTMLPIRWMPP  193 (280)
T ss_pred             CcceecCCCCcccceecCh
Confidence                111233456778887

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.63  E-value=1.4e-08  Score=99.28  Aligned_cols=148  Identities=20%  Similarity=0.182  Sum_probs=98.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       ..|+|.+....... ..... .+|  +++.++|+|+++....+           ... . 
T Consensus         7 ~~vy~~~~~~~~~-------~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~-----------~~~-~-   66 (265)
T cd05579           7 GRVFLAKKKSTGD-------IYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSF-----------QGK-K-   66 (265)
T ss_pred             eEEEEEEECCCCC-------EEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHhe-----------ecC-c-
Confidence            4566677766676       67777654321110 11111 222  67788899998644333           111 1 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++.+++.      .....+...+..++.|++.++.+ |..+|+|+||+     |+||++.. ++.+
T Consensus        67 --~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~-----~~nil~~~-~~~~  132 (265)
T cd05579          67 --NLYLVMEYLPGGDLASLLE------NVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLK-----PDNILIDS-NGHL  132 (265)
T ss_pred             --EEEEEEecCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCC-----HHHeEEcC-CCCE
Confidence              26788888864 5555543      22357888899999999999999 99999999999     99999975 5889


Q ss_pred             EEecCCCCCCCCCC----------CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHEN----------EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~----------~~t~yv~tr~YraP  512 (512)
                      +++|||++......          .....+++..|+||
T Consensus       133 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  170 (265)
T cd05579         133 KLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAP  170 (265)
T ss_pred             EEEecccchhcccCcccccccccccccCcccCccccCH
Confidence            99999997632111          22345667777776

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.63  E-value=2.2e-08  Score=98.60  Aligned_cols=113  Identities=18%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||++..+.+          . ..+    ..+.+++++.. ++..+++      .....+...+..++.|++.
T Consensus        59 ~l~~l~h~~i~~~~~~~----------~-~~~----~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~~l~~  117 (267)
T cd06628          59 LLKELQHENIVQYLGSS----------L-DAD----HLNIFLEYVPGGSVAALLN------NYGAFEETLVRNFVRQILK  117 (267)
T ss_pred             HHHhcCCCCeeeEEEEE----------E-eCC----ccEEEEEecCCCCHHHHHH------hccCccHHHHHHHHHHHHH
Confidence            68888999998765544          1 111    25677888764 5555543      3334677788899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--------CCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--------NEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--------~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+++|+||+     |+||++.. ++.++++|||+++....        .....+.++..|+||
T Consensus       118 ~l~~lH~~~ivH~di~-----p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p  181 (267)
T cd06628         118 GLNYLHNRGIIHRDIK-----GANILVDN-KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAP  181 (267)
T ss_pred             HHHHHHhcCcccccCC-----HHHEEEcC-CCCEEecccCCCcccccccccCCccccccccCCCcCccCh
Confidence            9999 99999999999     99999964 58899999999863221        112345677778887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.63  E-value=1.7e-08  Score=101.20  Aligned_cols=147  Identities=18%  Similarity=0.192  Sum_probs=99.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|......  ...... .+|  +++.++|+|++...+.|.           .++   
T Consensus        26 g~vy~~~~~~~~~-------~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~---   82 (292)
T cd06644          26 GKVYKAKNKETGA-------LAAAKVIETKS--EEELEDYMVEIEILATCNHPYIVKLLGAFY-----------WDG---   82 (292)
T ss_pred             eEEEEEEECCCCc-------eEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCcEeeeEEEEE-----------eCC---
Confidence            5677777776676       66777654311  111111 223  578889999997766551           111   


Q ss_pred             cceeEEeccccCCh-HHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADT-TRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~-~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       ..+.+++++...+ ..++.     +.....+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|
T Consensus        83 -~~~lv~e~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~k  150 (292)
T cd06644          83 -KLWIMIEFCPGGAVDAIML-----ELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLK-----AGNVLLTL-DGDIK  150 (292)
T ss_pred             -eEEEEEecCCCCcHHHHHH-----hhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCC-----cceEEEcC-CCCEE
Confidence             2678899987554 22221     122346788999999999999999 99999999999     99999864 58899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...  ........++..|+||
T Consensus       151 l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  179 (292)
T cd06644         151 LADFGVSAKNVKTLQRRDSFIGTPYWMAP  179 (292)
T ss_pred             EccCccceeccccccccceecCCccccCc
Confidence            99999986322  1223345677788887

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.63  E-value=3.5e-08  Score=97.06  Aligned_cols=153  Identities=14%  Similarity=0.021  Sum_probs=98.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH---HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV---ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~---~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++..+..-......+|+|.+....  .......   ..+++.+.|+|++.....|+          . ...  
T Consensus         9 ~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~----------~-~~~--   73 (258)
T cd05078           9 TKIFKGIRREVGDYGELHKTEVLLKVLDKSH--RNYSESFFEAASMMSQLSHKHLVLNYGVCV----------C-GDE--   73 (258)
T ss_pred             hhheeeeecccccccccccchhhHHhhcchh--HHHHHHHHHHHHHHHhCCCCChhheeeEEE----------e-CCC--
Confidence            4566666655443111122357777764321  1111121   22678889999997766552          1 111  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC---
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL---  482 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~---  482 (512)
                        .+.+++++.. ++..++...     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.....   
T Consensus        74 --~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlk-----p~nili~~~~~~~~  141 (258)
T cd05078          74 --SIMVQEYVKFGSLDTYLKKN-----KNLINISWKLEVAKQLAWALHFLEDKGLTHGNVC-----AKNVLLIREEDRKT  141 (258)
T ss_pred             --cEEEEecCCCCcHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCc-----cceEEEeccccccc
Confidence              5678999874 555554322     2236777888899999999999 99999999999     99999965422   


Q ss_pred             ----eEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        483 ----VLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ----~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                          .+|++|||++.....  ...+.++..|+||
T Consensus       142 ~~~~~~~l~d~g~~~~~~~--~~~~~~~~~y~aP  173 (258)
T cd05078         142 GNPPFIKLSDPGISITVLP--KEILLERIPWVPP  173 (258)
T ss_pred             CCCceEEecccccccccCC--chhccccCCccCc
Confidence                379999999863321  1234566778777

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.63  E-value=2.5e-08  Score=97.47  Aligned_cols=111  Identities=13%  Similarity=-0.024  Sum_probs=79.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+.....++          .      .....+++++.. ++..++...     ....+...+..++.|++.
T Consensus        54 ~l~~l~h~~i~~~~~~~~----------~------~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~i~~  112 (259)
T cd05037          54 LMSQLSHKHLVKLYGVCV----------R------DENIMVEEYVKFGPLDVFLHRE-----KNNVSLHWKLDVAKQLAS  112 (259)
T ss_pred             HHHcCCCcchhheeeEEe----------c------CCcEEEEEcCCCCcHHHHHHhh-----ccCCCHHHHHHHHHHHHH
Confidence            688889999997665542          1      124678899874 444444322     224677888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCC-------eEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKL-------VLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~-------~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+|+++... +       .+|++|||+++....  ....+++..|+||
T Consensus       113 ~l~~LH~~~i~H~dlk-----p~Nill~~~-~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~~~y~aP  173 (259)
T cd05037         113 ALHYLEDKKLVHGNVC-----GKNILVARY-GLNEGYVPFIKLSDPGIPITVLS--REERVERIPWIAP  173 (259)
T ss_pred             HHHHHhhCCeecccCc-----cceEEEecC-ccccCCceeEEeCCCCccccccc--ccccccCCCccCh
Confidence            9999 99999999999     999999754 4       699999999874322  1123444556666

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=98.63  E-value=1.2e-08  Score=100.81  Aligned_cols=149  Identities=15%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.++.       .+|+|.+...... ....-.+|  +++.++|+||++....+.          . .    -
T Consensus        22 g~v~~~~~~~~~~-------~v~~k~~~~~~~~-~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~-~----~   78 (268)
T cd06624          22 GIVYAARDLSTQV-------RIAIKEIPERDSR-YVQPLHEEIALHSYLKHRNIVQYLGSDS----------E-N----G   78 (268)
T ss_pred             eEEEEeEecCCCc-------EEEEEEecCCCHH-HHHHHHHHHHHHHhcCCCCeeeeeeeec----------c-C----C
Confidence            5566666665555       6777765432110 01011222  678889999997655441          1 1    1


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCC--ChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGR--DADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~--d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      ..+.+++++. .++..++.-+     ....  +...+..++.|++.++.+ |..+|+|+|+|     |+||++....+.+
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~-----p~nil~~~~~~~~  148 (268)
T cd06624          79 FFKIFMEQVPGGSLSALLRSK-----WGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIK-----GDNVLVNTYSGVV  148 (268)
T ss_pred             EEEEEEecCCCCCHHHHHHHh-----cccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCC-----HHHEEEcCCCCeE
Confidence            3678888887 4555555421     1123  667788899999999999 99999999999     9999997656789


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +++|||++....  ......+.++..|+||
T Consensus       149 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~aP  178 (268)
T cd06624         149 KISDFGTSKRLAGINPCTETFTGTLQYMAP  178 (268)
T ss_pred             EEecchhheecccCCCccccCCCCccccCh
Confidence            999999976321  1222334567778777

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.62  E-value=1.4e-08  Score=102.43  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=100.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+...+.       .+|+|.+..... .....-.+|  ++..+.|||+++....|.          . .+    
T Consensus        35 g~v~~~~~~~~~~-------~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~hp~i~~~~~~~~----------~-~~----   91 (297)
T cd06659          35 GIVCIAREKHSGR-------QVAVKMMDLRKQ-QRRELLFNEVVIMRDYQHQNVVEMYKSYL----------V-GE----   91 (297)
T ss_pred             eeEEEEEEcCCCC-------EEEEEEEEeccc-chHHHHHHHHHHHHhCCCCchhhhhhhee----------e-CC----
Confidence            5566666666666       788887643211 111111233  577789999986555441          1 11    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++.. ++..++      . +...+...+..++.|++.++.+ |..+|+|+||+     |+||++.. ++.+|+
T Consensus        92 ~~~iv~e~~~~~~L~~~~------~-~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~-----p~Nill~~-~~~~kL  158 (297)
T cd06659          92 ELWVLMEFLQGGALTDIV------S-QTRLNEEQIATVCESVLQALCYLHSQGVIHRDIK-----SDSILLTL-DGRVKL  158 (297)
T ss_pred             eEEEEEecCCCCCHHHHH------h-hcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHeEEcc-CCcEEE
Confidence            26788888874 433332      1 2246788899999999999999 99999999999     99999965 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ......++++..|+||
T Consensus       159 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  186 (297)
T cd06659         159 SDFGFCAQISKDVPKRKSLVGTPYWMAP  186 (297)
T ss_pred             eechhHhhcccccccccceecCccccCH
Confidence            9999986322  1223457888999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.61  E-value=2e-08  Score=103.57  Aligned_cols=71  Identities=20%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeec
Q psy17422        436 GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYR  510 (512)
Q Consensus       436 ~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~Yr  510 (512)
                      ..+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++.....    ......++..|+
T Consensus       169 ~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDik-----p~Nill~~-~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~  242 (337)
T cd05054         169 PLTLEDLISYSFQVARGMEFLASRKCIHRDLA-----ARNILLSE-NNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM  242 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----cceEEEeC-CCcEEEeccccchhcccCcchhhccCCCCCcccc
Confidence            45777888999999999999 99999999999     99999975 588999999998742111    112334556788


Q ss_pred             cC
Q psy17422        511 AP  512 (512)
Q Consensus       511 aP  512 (512)
                      ||
T Consensus       243 aP  244 (337)
T cd05054         243 AP  244 (337)
T ss_pred             Cc
Confidence            87

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=98.61  E-value=1.4e-08  Score=112.10  Aligned_cols=69  Identities=26%  Similarity=0.319  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        439 ADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       439 ~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      ...+..++.|++.+|.| |..+|+|||||     |+||++....+.+|++|||+|+...   ......+++|+.|+||
T Consensus       254 ~~~i~~i~~qll~aL~yLH~~gIiHRDLK-----P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~AP  326 (566)
T PLN03225        254 NKIIQTIMRQILFALDGLHSTGIVHRDVK-----PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAP  326 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEeCcCC-----HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccCh
Confidence            34577899999999999 99999999999     9999997655789999999997322   2223567899999998

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.61  E-value=2.6e-08  Score=97.89  Aligned_cols=116  Identities=8%  Similarity=0.050  Sum_probs=81.2

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+............ .+|  ++..++|+||+.....+           +.  .   ....+++++. .++.+++.
T Consensus        24 ~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~--~---~~~lv~e~~~~~~L~~~l~   87 (257)
T cd05116          24 TVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGIC-----------EA--E---SWMLVMELAELGPLNKFLQ   87 (257)
T ss_pred             EEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEE-----------cC--C---CcEEEEecCCCCcHHHHHH
Confidence            6777766432221111122 222  67888999998654322           11  1   1467888887 45555553


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                            .....+...+..++.|++.++.+ |..+|+|+|||     |.|+++.. ++.+|++|||+++.
T Consensus        88 ------~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlk-----p~nill~~-~~~~kl~Dfg~~~~  144 (257)
T cd05116          88 ------KNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLA-----ARNVLLVT-QHYAKISDFGLSKA  144 (257)
T ss_pred             ------hcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc-----hhhEEEcC-CCeEEECCCccccc
Confidence                  22346788899999999999999 99999999999     99999975 47899999999873

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.61  E-value=1.5e-08  Score=99.84  Aligned_cols=130  Identities=16%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++..+.++.       .+|+|.+....  .....-.+|  +++.++|+|++.....++           .    ..
T Consensus        20 ~~v~~~~~~~~~~-------~~~~K~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~----~~   75 (263)
T cd05052          20 GEVYEGVWKKYSL-------TVAVKTLKEDT--MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----------R----EP   75 (263)
T ss_pred             ceEEEEEEecCCc-------eEEEEEecCCc--hHHHHHHHHHHHHHhCCCCChhheEEEEc-----------C----CC
Confidence            4566666666666       77777654321  111111333  677889999987655441           1    12


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      +++.++++|. .++..++.-..    ....+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|+
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~----~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk-----p~nil~~~-~~~~kl  145 (263)
T cd05052          76 PFYIITEFMTYGNLLDYLRECN----RQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA-----ARNCLVGE-NHLVKV  145 (263)
T ss_pred             CcEEEEEeCCCCcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccC-----cceEEEcC-CCcEEe
Confidence            4778899886 45555553211    2236777888899999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCC
Q psy17422        487 CDFGSASW  494 (512)
Q Consensus       487 ~DfGlar~  494 (512)
                      +|||+++.
T Consensus       146 ~df~~~~~  153 (263)
T cd05052         146 ADFGLSRL  153 (263)
T ss_pred             CCCccccc
Confidence            99999874

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.61  E-value=2.7e-08  Score=97.20  Aligned_cols=154  Identities=19%  Similarity=0.304  Sum_probs=103.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+........-... ..|  +++.++|+|+++..+.|          ...   +.
T Consensus        14 ~~v~~~~~~~~~~-------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~~~---~~   73 (265)
T cd08217          14 GTVRKVRRKSDGK-------ILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRI----------IDR---SN   73 (265)
T ss_pred             eEEEEeeecCCCC-------EEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeee----------ecC---CC
Confidence            5667777777776       6677765432111100011 122  67888999998654433          111   11


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-C-----CCCCChHHHHhhccccccccccCC
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P-----SSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h-----~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      ..++.+++++. .++..++.-  ........+...+..++.|++.++.+ |     ..+|+|+|++     |+||++.. 
T Consensus        74 ~~~~~~~e~~~~~~L~~~l~~--~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~-----p~nili~~-  145 (265)
T cd08217          74 QTLYIVMEYCEGGDLAQLIQK--CKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK-----PANIFLDA-  145 (265)
T ss_pred             CEEEEEehhccCCCHHHHHHH--HhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCC-----HHHEEEec-
Confidence            22678888886 456666532  22233457888899999999999999 9     8999999999     99999975 


Q ss_pred             CCeEEEecCCCCCCCCCCC--ccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWSHENE--ITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~~~~~--~t~yv~tr~YraP  512 (512)
                      .+.+|++|||++.......  ...++++..|+||
T Consensus       146 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~p  179 (265)
T cd08217         146 NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSP  179 (265)
T ss_pred             CCCEEEecccccccccCCcccccccccCCCccCh
Confidence            5899999999987432211  3456788889887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=98.61  E-value=2.6e-08  Score=97.19  Aligned_cols=148  Identities=21%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC---CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT---VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~---i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++..+.++.       .+|+|.+........   .... .+|  +++.++|+|+++....+           ... 
T Consensus        14 ~~vy~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~-----------~~~-   74 (258)
T cd06632          14 GSVYEGLNLDDGD-------FFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTE-----------REE-   74 (258)
T ss_pred             ceEEEEEEcCCCc-------EEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeE-----------ecC-
Confidence            3455566655565       677776543211110   1111 122  67888999998655443           111 


Q ss_pred             CCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        405 NGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                         ..++.+++++.. ++.+++.      .....+...+..++.|++.++.+ |..+|+|+||+     |+||.+.. .+
T Consensus        75 ---~~~~lv~e~~~~~~L~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----~~ni~~~~-~~  139 (258)
T cd06632          75 ---DNLYIFLELVPGGSLAKLLK------KYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIK-----GANILVDT-NG  139 (258)
T ss_pred             ---CeEEEEEEecCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CC
Confidence               126778888864 5555543      33346788888999999999999 99999999999     99999975 48


Q ss_pred             eEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++... ........++..|+||
T Consensus       140 ~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~p  170 (258)
T cd06632         140 VVKLADFGMAKQVVEFSFAKSFKGSPYWMAP  170 (258)
T ss_pred             CEEEccCccceeccccccccccCCCcceeCH
Confidence            89999999986322 2223445677778876

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=98.61  E-value=1.3e-08  Score=101.21  Aligned_cols=148  Identities=18%  Similarity=0.210  Sum_probs=100.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++..+.++.       .+|+|.+.... ......-.+|  +++.++|+|++...+.|          . ..    .
T Consensus        19 ~~v~~~~~~~~~~-------~~~iK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~-~~----~   75 (280)
T cd06611          19 GKVYKAQHKETGL-------FAAAKIIQIES-EEELEDFMVEIDILSECKHPNIVGLYEAY----------F-YE----N   75 (280)
T ss_pred             ceEEEEEEcCCCc-------EEEEEEEeeCC-HHHHHHHHHHHHHHHhCCCCceeEEEEEE----------e-cC----C
Confidence            5667776666666       67777654211 0111111233  68888999999776655          1 11    1


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++.-.     ....+...+..++.|++.++.+ |..+|+|+|++     |+|+++.. ++.+++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~-----~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~-----p~nili~~-~~~~~l  144 (280)
T cd06611          76 KLWILIEFCDGGALDSIMLEL-----ERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLK-----AGNILLTL-DGDVKL  144 (280)
T ss_pred             eEEEEeeccCCCcHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----hhhEEECC-CCCEEE
Confidence            37889999975 555554321     2246788899999999999999 99999999999     99999864 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||++....  .......++|..|+||
T Consensus       145 ~d~g~~~~~~~~~~~~~~~~~~~~y~~P  172 (280)
T cd06611         145 ADFGVSAKNKSTLQKRDTFIGTPYWMAP  172 (280)
T ss_pred             ccCccchhhcccccccceeecchhhcCH
Confidence            9999876321  1222345677778776

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.61  E-value=2.2e-08  Score=99.32  Aligned_cols=147  Identities=18%  Similarity=0.210  Sum_probs=98.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC---CCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA---CVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~---~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+..+|.       .+|+|.+........+..-.+|  +++.++   |+|++.....|.          . .. 
T Consensus        15 g~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~----------~-~~-   75 (277)
T cd06917          15 GAVYRGKHVPTGR-------VVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYL----------K-GP-   75 (277)
T ss_pred             ceEEEEEEcCCCc-------EEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeee----------e-CC-
Confidence            5667777766666       7788876433222222211233  455554   899987655441          1 11 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         ..+.+++++.. ++..+++      . ...+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.
T Consensus        76 ---~~~lv~e~~~~~~L~~~~~------~-~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~-----p~ni~i~~-~~~  139 (277)
T cd06917          76 ---RLWIIMEYAEGGSVRTLMK------A-GPIAEKYISVIIREVLVALKYIHKVGVIHRDIK-----AANILVTN-TGN  139 (277)
T ss_pred             ---EEEEEEecCCCCcHHHHHH------c-cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcC-----HHHEEEcC-CCC
Confidence               25678888864 5544443      2 246778888999999999999 99999999999     99999975 588


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++++|||++...  ........+++..|+||
T Consensus       140 ~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  170 (277)
T cd06917         140 VKLCDFGVAALLNQNSSKRSTFVGTPYWMAP  170 (277)
T ss_pred             EEEccCCceeecCCCccccccccCCcceeCH
Confidence            999999998632  12223345677788887

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.60  E-value=1.9e-08  Score=100.08  Aligned_cols=133  Identities=11%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++....+|...   ...+|+|.+....... .... .+|  ++..++|+||+.....+.          .   .  
T Consensus        21 g~vy~~~~~~~~~~~---~~~va~K~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~----------~---~--   81 (279)
T cd05109          21 GTVYKGIWIPDGENV---KIPVAIKVLRENTSPK-ANKEILDEAYVMAGVGSPYVCRLLGICL----------T---S--   81 (279)
T ss_pred             ceEEEEEEecCCCcc---ceEEEEEEecCCCCHH-HHHHHHHHHHHHHhcCCCCCceEEEEEc----------C---C--
Confidence            566666666666511   0125666654321110 0111 222  567788999986544331          1   0  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       ....++++|.. ++..++.     ..+.......+..++.|++.++.+ |+++|+|+|||     |+||++.. .+.+|
T Consensus        82 -~~~l~~~~~~~g~l~~~l~-----~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlk-----p~Nil~~~-~~~~k  149 (279)
T cd05109          82 -TVQLVTQLMPYGCLLDYVR-----ENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLA-----ARNVLVKS-PNHVK  149 (279)
T ss_pred             -CcEEEEEcCCCCCHHHHHh-----hccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc-----cceEEEcC-CCcEE
Confidence             14567777764 4433332     112346788899999999999999 99999999999     99999965 47899


Q ss_pred             EecCCCCCC
Q psy17422        486 LCDFGSASW  494 (512)
Q Consensus       486 l~DfGlar~  494 (512)
                      ++|||+++.
T Consensus       150 L~dfG~~~~  158 (279)
T cd05109         150 ITDFGLARL  158 (279)
T ss_pred             ECCCCceee
Confidence            999999873

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.60  E-value=1.7e-08  Score=99.13  Aligned_cols=146  Identities=18%  Similarity=0.180  Sum_probs=97.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+..+|.       .+|+|.+.+...  .........+   +....+|+|+++....|.           ..+ 
T Consensus        10 ~~v~~a~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~-----------~~~-   70 (260)
T cd05611          10 GSVYLAKKRSTGD-------YFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQ-----------SKD-   70 (260)
T ss_pred             eeEEEEEecCCCC-------eEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEE-----------cCC-
Confidence            5677777777777       778877643211  1111111122   233457899987665551           111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         -++.++|++.. ++..++      +.....+...+..++.|++.++.+ |..+|+|+|++     |.||++.. ++.
T Consensus        71 ---~~~lv~e~~~~~~L~~~l------~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~-----p~nil~~~-~~~  135 (260)
T cd05611          71 ---YLYLVMEYLNGGDCASLI------KTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIK-----PENLLIDQ-TGH  135 (260)
T ss_pred             ---eEEEEEeccCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEECC-CCc
Confidence               27888999975 444444      333347788899999999999999 99999999999     99999975 578


Q ss_pred             EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++....  ...+.++..|+||
T Consensus       136 ~~l~dfg~~~~~~~--~~~~~~~~~y~~p  162 (260)
T cd05611         136 LKLTDFGLSRNGLE--NKKFVGTPDYLAP  162 (260)
T ss_pred             EEEeecccceeccc--cccCCCCcCccCh
Confidence            99999999874322  1234566667776

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=98.60  E-value=1.7e-08  Score=101.78  Aligned_cols=145  Identities=17%  Similarity=0.239  Sum_probs=100.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.......  ... .+|  +++.++|+|++...+.|.          . . .  
T Consensus        33 g~v~~~~~~~~~~-------~vaiK~~~~~~~~~--~~~~~~e~~~l~~~~h~~i~~~~~~~~----------~-~-~--   89 (297)
T cd06656          33 GTVYTAIDIATGQ-------EVAIKQMNLQQQPK--KELIINEILVMRENKNPNIVNYLDSYL----------V-G-D--   89 (297)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEecCccch--HHHHHHHHHHHHhCCCCCEeeEEEEEe----------c-C-C--
Confidence            5677777777777       88888765322111  111 233  678889999997666551          1 1 1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++.+++++.. ++..++.       +...+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.++
T Consensus        90 -~~~lv~e~~~~~~L~~~~~-------~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~-----p~Nili~~-~~~~~  155 (297)
T cd06656          90 -ELWVVMEYLAGGSLTDVVT-------ETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIK-----SDNILLGM-DGSVK  155 (297)
T ss_pred             -EEEEeecccCCCCHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCEE
Confidence             26788898874 4444432       2235677888999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||++....  ........++.+|+||
T Consensus       156 l~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  184 (297)
T cd06656         156 LTDFGFCAQITPEQSKRSTMVGTPYWMAP  184 (297)
T ss_pred             ECcCccceEccCCccCcCcccCCccccCH
Confidence            99999986322  1223445778888887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=98.60  E-value=1.8e-08  Score=99.63  Aligned_cols=137  Identities=12%  Similarity=0.062  Sum_probs=91.2

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      ..+|+|.+...........-.+|  ++..++||||++..+.|.           ..+    .++.+++++.. ++..++.
T Consensus        34 ~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----------~~~----~~~lv~e~~~~~~L~~~l~   98 (266)
T cd05064          34 LPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVIT-----------RGN----TMMIVTEYMSNGALDSFLR   98 (266)
T ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEe-----------cCC----CcEEEEEeCCCCcHHHHHH
Confidence            36777776543221111111233  577789999997766551           111    27889999975 5555553


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC-Ccc--C
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN-EIT--P  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~-~~t--~  502 (512)
                      .     .........+..++.|++.++.+ |..+|+|+|||     |+||++.. ++..|++|||.+...... ...  .
T Consensus        99 ~-----~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dik-----p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~  167 (266)
T cd05064          99 K-----HEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLA-----AHKVLVNS-DLVCKISGFRRLQEDKSEAIYTTMS  167 (266)
T ss_pred             h-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc-----HhhEEEcC-CCcEEECCCcccccccccchhcccC
Confidence            2     12346778899999999999999 99999999999     99999875 588999999987632211 111  1


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..++..|+||
T Consensus       168 ~~~~~~y~aP  177 (266)
T cd05064         168 GKSPVLWAAP  177 (266)
T ss_pred             CCCceeecCH
Confidence            2334568877

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.60  E-value=1.1e-08  Score=100.44  Aligned_cols=149  Identities=19%  Similarity=0.223  Sum_probs=100.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.++.       .+|+|.+.....+.....-.+|  +++.++|+||+.....|          .. .    -
T Consensus        15 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~----------~~-~----~   72 (265)
T cd06605          15 GVVSKVLHRPTGK-------IMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAF----------YN-N----G   72 (265)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheee----------ec-C----C
Confidence            5677777777777       7788876543221111111233  56778899998654443          11 1    1


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .++.+++++. .++..++...     +...+...+..++.|++.++.+ |. .+++|+||+     |.||++.. ++.++
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~-----~~ni~~~~-~~~~~  141 (265)
T cd06605          73 DISICMEYMDGGSLDKILKEV-----QGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVK-----PSNILVNS-RGQIK  141 (265)
T ss_pred             EEEEEEEecCCCcHHHHHHHc-----cCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCC-----HHHEEECC-CCCEE
Confidence            2678888888 5655555422     1446788889999999999999 99 999999999     99999976 58899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||.+............++..|+||
T Consensus       142 l~d~g~~~~~~~~~~~~~~~~~~y~~P  168 (265)
T cd06605         142 LCDFGVSGQLVNSLAKTFVGTSSYMAP  168 (265)
T ss_pred             EeecccchhhHHHHhhcccCChhccCH
Confidence            999999763211111125666777776

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.60  E-value=2.9e-08  Score=98.61  Aligned_cols=155  Identities=24%  Similarity=0.296  Sum_probs=104.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HH---hhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--IL---NDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll---~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.++.+|.       .+|+|.+.........+.. .+|  ++   +..+|+|+++..+.|+          ..+.
T Consensus        13 ~~v~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~----------~~~~   75 (287)
T cd07838          13 GTVYKARDLNTGR-------FVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCH----------GPRT   75 (287)
T ss_pred             eEEEEEEECCCCC-------EEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEe----------eccC
Confidence            4566667666666       7888887644333332222 233  33   3446999987666552          1111


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      .+...++.+++++..++.+++....    ....+...+..++.|++.++.+ |..+++|+|++     |+|+++... +.
T Consensus        76 ~~~~~~~l~~e~~~~~l~~~l~~~~----~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~-----~~nili~~~-~~  145 (287)
T cd07838          76 DRELKLTLVFEHVDQDLATYLSKCP----KPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLK-----PQNILVTSD-GQ  145 (287)
T ss_pred             CCCceeEEEehhcccCHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----hhhEEEccC-CC
Confidence            1222367778888766666554211    2246788999999999999999 99999999999     999999764 89


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. ........+++..|+||
T Consensus       146 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~P  175 (287)
T cd07838         146 VKIADFGLARIYSFEMALTSVVVTLWYRAP  175 (287)
T ss_pred             EEEeccCcceeccCCcccccccccccccCh
Confidence            999999998632 22233445677788887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.60  E-value=1.8e-08  Score=100.37  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=99.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+....  ........+  ++..+ +|+|+++....|...         ......
T Consensus        30 ~~v~~~~~~~~~~-------~~a~K~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~---------~~~~~~   91 (282)
T cd06636          30 GQVYKGRHVKTGQ-------LAAIKVMDVTE--DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK---------SPPGHD   91 (282)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecCh--HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc---------cccCCC
Confidence            4556666666665       66776543211  111111122  34444 699999776655210         000111


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..++.+++++.. ++.++++...    ....+...+..++.|++.++.+ |..+|+|+|++     |+||++.. .+.++
T Consensus        92 ~~~~iv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~-----~~nili~~-~~~~~  161 (282)
T cd06636          92 DQLWLVMEFCGAGSVTDLVKNTK----GNALKEDWIAYICREILRGLAHLHAHKVIHRDIK-----GQNVLLTE-NAEVK  161 (282)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCEE
Confidence            237889999975 6666654321    1235677788899999999999 99999999999     99999975 57899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...  .......+++..|+||
T Consensus       162 l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  190 (282)
T cd06636         162 LVDFGVSAQLDRTVGRRNTFIGTPYWMAP  190 (282)
T ss_pred             EeeCcchhhhhccccCCCcccccccccCH
Confidence            99999987322  2233456788899987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.60  E-value=4.5e-08  Score=96.99  Aligned_cols=117  Identities=12%  Similarity=0.089  Sum_probs=83.9

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++||||++..+.|.               ...+++.+++++. .++..++.-...  .....+...+..++.|++.
T Consensus        48 ~~~~l~h~~iv~~~~~~~---------------~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~~~i~~  110 (268)
T cd05086          48 PYRILQHPNILQCLGQCV---------------EAIPYLLVFEYCELGDLKSYLSQEQW--HRRNSQLLLLQRMACEIAA  110 (268)
T ss_pred             HHhccCCcchhheEEEec---------------CCCccEEEEecCCCCcHHHHHHhhhc--ccccccHHHHHHHHHHHHH
Confidence            567789999997666551               1235789999997 466666642211  1123456677889999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+||++.. ++.+|++|||++.....    ......+++..|+||
T Consensus       111 al~~lH~~~i~H~dik-----p~nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  170 (268)
T cd05086         111 GVTHMHKHNFLHSDLA-----LRNCFLTS-DLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAP  170 (268)
T ss_pred             HHHHHHHCCeeccCCc-----cceEEEcC-CccEEecccccccccCcchhhhcccCCcCcccccCc
Confidence            9999 99999999999     99999864 58899999999763211    112344667778887

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.59  E-value=2.2e-08  Score=99.12  Aligned_cols=119  Identities=15%  Similarity=0.157  Sum_probs=83.0

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhh----hccCCChHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYR----DQAGRDADVIYRRAQ  447 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~----~ka~~d~~~v~~~~~  447 (512)
                      ++..++|+||++..+.+.           .    ..+++.+++++. .++..++.-...-.    .....+...+..++.
T Consensus        62 ~l~~~~~~~i~~~~~~~~-----------~----~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (277)
T cd05032          62 VMKEFNCHHVVRLLGVVS-----------T----GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAA  126 (277)
T ss_pred             HHHhCCCCceeEEEEEEc-----------C----CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHH
Confidence            577889999997665541           1    124778888886 56666664221111    112246678888999


Q ss_pred             HHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        448 QLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       448 qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      |++.++.+ |.++|+|+|||     |+||++.. .+.+|++|||+++.....    ......++..|+||
T Consensus       127 ~i~~~l~~lH~~~i~H~di~-----p~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  190 (277)
T cd05032         127 EIADGMAYLAAKKFVHRDLA-----ARNCMVAE-DLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP  190 (277)
T ss_pred             HHHHHHHHHHhCCccccccC-----hheEEEcC-CCCEEECCcccchhhccCcccccCCCCCccccccCH
Confidence            99999999 99999999999     99999975 488999999998732111    12233456678777

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.59  E-value=2.6e-08  Score=100.55  Aligned_cols=145  Identities=15%  Similarity=0.198  Sum_probs=99.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+...|.       .+|+|.+.....  ..... .+|  +++.++|+|++...+.|.          . . .  
T Consensus        33 g~vy~~~~~~~~~-------~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~-~-~--   89 (296)
T cd06655          33 GTVFTAIDVATGQ-------EVAIKQINLQKQ--PKKELIINEILVMKELKNPNIVNFLDSFL----------V-G-D--   89 (296)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecccC--chHHHHHHHHHHHHhcCCCceeeeeeeEe----------c-C-c--
Confidence            4556666666665       788887653221  11122 233  578889999997766652          1 1 1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+++++.. ++..++.       +...+...+..++.+++.++.+ |..+|.|+|+|     |+||++.. ++.+|
T Consensus        90 -~~~lv~e~~~~~~L~~~~~-------~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~-----p~Nili~~-~~~~k  155 (296)
T cd06655          90 -ELFVVMEYLAGGSLTDVVT-------ETCMDEAQIAAVCRECLQALEFLHANQVIHRDIK-----SDNVLLGM-DGSVK  155 (296)
T ss_pred             -eEEEEEEecCCCcHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCEE
Confidence             26788888875 3333332       2246788999999999999999 99999999999     99999965 58899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...  ........++..|+||
T Consensus       156 l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  184 (296)
T cd06655         156 LTDFGFCAQITPEQSKRSTMVGTPYWMAP  184 (296)
T ss_pred             EccCccchhcccccccCCCcCCCccccCc
Confidence            99999976321  1122345678889887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.59  E-value=2e-08  Score=100.49  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=75.7

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHH----------hhhhccCCChH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQ----------LYRDQAGRDAD  440 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~----------iy~~ka~~d~~  440 (512)
                      ++..+ +|+||++....++           .    .-+++.+++++. .++..++....          ........+..
T Consensus        68 ~l~~l~~h~~i~~~~~~~~-----------~----~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  132 (293)
T cd05053          68 MMKMIGKHKNIINLLGVCT-----------Q----EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQK  132 (293)
T ss_pred             HHHhhcCCCCeeeEEEEEc-----------C----CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHH
Confidence            46666 7999987655541           1    124788888876 46666664321          11222346788


Q ss_pred             HHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        441 VIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       441 ~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus       133 ~~~~i~~qi~~al~~LH~~~ivH~dlk-----p~Nil~~~-~~~~kL~Dfg~~~~  181 (293)
T cd05053         133 DLVSFAYQVARGMEFLASKKCIHRDLA-----ARNVLVTE-DHVMKIADFGLARD  181 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccccc-----eeeEEEcC-CCeEEeCccccccc
Confidence            889999999999999 99999999999     99999965 58999999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.59  E-value=2.3e-08  Score=100.09  Aligned_cols=153  Identities=20%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+.+.+..++.       ..|+|.+...... ..... .+|  +++.++|+||+.....|.          .....  
T Consensus        15 ~~v~~~~~~~~~~-------~~~~k~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~~~~~--   74 (287)
T cd06621          15 GSVTKCRLKNTGM-------IFALKTITTDPNP-DLQKQILRELEINKSCKSPYIVKYYGAFL----------DESSS--   74 (287)
T ss_pred             eEEEEEEECCCCe-------EEEEEEEecCCch-HHHHHHHHHHHHHHhCCCCCeeeeeeEEE----------ccCCC--
Confidence            4556666665555       6777766532111 11111 233  678889999997655541          11111  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++.+++++. .++..++..  ............+..++.|++.++.+ |..+++|+|++     |.|+++.. .+.++
T Consensus        75 -~~~lv~e~~~~~~L~~~l~~--~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~-----~~nil~~~-~~~~~  145 (287)
T cd06621          75 -SIGIAMEYCEGGSLDSIYKK--VKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIK-----PSNILLTR-KGQVK  145 (287)
T ss_pred             -eEEEEEEecCCCCHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEEec-CCeEE
Confidence             1678899997 466665542  22223346778889999999999999 99999999999     99999975 47899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++............++..|+||
T Consensus       146 l~dfg~~~~~~~~~~~~~~~~~~y~~p  172 (287)
T cd06621         146 LCDFGVSGELVNSLAGTFTGTSFYMAP  172 (287)
T ss_pred             EeeccccccccccccccccCCccccCH
Confidence            999999864322222344566778776

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=98.59  E-value=2.1e-08  Score=98.51  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=74.2

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+...+.+           ..    .-+.+.+++++. .++..++...     +...+...+..++.|++.
T Consensus        52 ~l~~l~~~~i~~~~~~~-----------~~----~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~  111 (256)
T cd05059          52 VMMKLSHPNLVQLYGVC-----------TK----QRPIFIVTEYMANGCLLNYLRER-----KGKLGTEWLLDMCSDVCE  111 (256)
T ss_pred             HHHhCCCCCEEEEEEEE-----------cC----CCceEEEEecCCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHH
Confidence            67888999998654443           11    124788899986 4555555321     224678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..+|+|+|+|     |+||++.. ++.+|++|||+++.
T Consensus       112 ~l~~lH~~~i~H~dl~-----p~ni~i~~-~~~~kl~dfg~~~~  149 (256)
T cd05059         112 AMEYLESNGFIHRDLA-----ARNCLVGE-DNVVKVSDFGLARY  149 (256)
T ss_pred             HHHHHHHCCccccccc-----HhhEEECC-CCcEEECCccccee
Confidence            9999 99999999999     99999975 58899999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=98.59  E-value=1.9e-08  Score=100.73  Aligned_cols=154  Identities=19%  Similarity=0.137  Sum_probs=100.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++..+.+|.       ..|+|.+....   .....+ ++  ++..+ +|+|++...+.|+          ..+...
T Consensus        36 ~~vy~~~~~~~~~-------~~aik~~~~~~---~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~----------~~~~~~   95 (291)
T cd06639          36 GKVYKVTNKKDGS-------LAAVKILDPIS---DVDEEIEAEYNILQSLPNHPNVVKFYGMFY----------KADKLV   95 (291)
T ss_pred             eEEEEEEECCCCC-------EEEEEEecccc---cHHHHHHHHHHHHHHhcCCCCeEEEEEEEE----------eccccC
Confidence            5677777777776       67777654321   111221 22  45555 7999997666552          111001


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      .-..+.++|++.. ++..+++-.  ...........+..++.|++.++.+ |..+|+|+|||     |+|+++.. .+.+
T Consensus        96 ~~~~~lv~ey~~~~sL~~~~~~~--~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk-----p~nili~~-~~~~  167 (291)
T cd06639          96 GGQLWLVLELCNGGSVTELVKGL--LICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVK-----GNNILLTT-EGGV  167 (291)
T ss_pred             CCeeEEEEEECCCCcHHHHHHHh--hhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----HHHEEEcC-CCCE
Confidence            1126788999874 555555421  1222346778899999999999999 99999999999     99999975 4789


Q ss_pred             EEecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....  ......+++..|+||
T Consensus       168 kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  197 (291)
T cd06639         168 KLVDFGVSAQLTSTRLRRNTSVGTPFWMAP  197 (291)
T ss_pred             EEeecccchhcccccccccCccCCccccCh
Confidence            9999999873221  112235677888887

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=98.59  E-value=2e-08  Score=99.77  Aligned_cols=119  Identities=16%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh----hhccCCChHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY----RDQAGRDADVIYRRAQ  447 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy----~~ka~~d~~~v~~~~~  447 (512)
                      +++.++|+||+...+.+           ..    .-+...+++++. .++..|+.-....    ......+...+..++.
T Consensus        62 ~l~~l~~~~iv~~~~~~-----------~~----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (277)
T cd05062          62 VMKEFNCHHVVRLLGVV-----------SQ----GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAG  126 (277)
T ss_pred             HHHhCCCCCeeeEEEEE-----------cC----CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHH
Confidence            67788999999765544           11    123678899887 5666665422110    0122346677888999


Q ss_pred             HHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC----ccCeeeeeeeccC
Q psy17422        448 QLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE----ITPYLVSRFYRAP  512 (512)
Q Consensus       448 qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~----~t~yv~tr~YraP  512 (512)
                      |++.++.+ |..+++|+|+|     |+||++.. .+.++++|||+++......    ...-.++..|+||
T Consensus       127 ~l~~~l~~lH~~~~vH~dlk-----p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  190 (277)
T cd05062         127 EIADGMAYLNANKFVHRDLA-----ARNCMVAE-DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  190 (277)
T ss_pred             HHHHHHHHHHHCCcccCCcc-----hheEEEcC-CCCEEECCCCCccccCCcceeecCCCCccCHhhcCh
Confidence            99999999 99999999999     99999975 4789999999987322111    1112345668887

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.59  E-value=1.8e-08  Score=102.03  Aligned_cols=147  Identities=17%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+...|.       .+|+|.+...... ...... .+|  +++.++|||+++..+.|.           .. . 
T Consensus        29 g~vy~~~~~~~~~-------~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~-----------~~-~-   88 (307)
T cd06607          29 GAVYFARDVRTNE-------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYL-----------RE-H-   88 (307)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEE-----------eC-C-
Confidence            4556666666666       7788876432111 111011 233  688899999997766551           11 1 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        ..+.+++++..++..++...     +...+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+|
T Consensus        89 --~~~lv~e~~~g~l~~~~~~~-----~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~-----p~nIl~~~-~~~~k  155 (307)
T cd06607          89 --TAWLVMEYCLGSASDILEVH-----KKPLQEVEIAAICHGALQGLAYLHSHERIHRDIK-----AGNILLTE-PGTVK  155 (307)
T ss_pred             --eEEEEHHhhCCCHHHHHHHc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----cccEEECC-CCCEE
Confidence              26788899887665554321     2236778888999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....  ...+.++..|+||
T Consensus       156 L~dfg~~~~~~~--~~~~~~~~~y~aP  180 (307)
T cd06607         156 LADFGSASLVSP--ANSFVGTPYWMAP  180 (307)
T ss_pred             EeecCcceecCC--CCCccCCccccCc
Confidence            999999864321  2345666777777

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.58  E-value=2.8e-08  Score=100.59  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=82.8

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLL  450 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL  450 (512)
                      +++.+ +|+||++....|.           .    .-+++.+++++. .++..+++...    ....+...+..++.+++
T Consensus        91 ~l~~l~~h~~iv~~~~~~~-----------~----~~~~~lv~e~~~~~~L~~~i~~~~----~~~l~~~~~~~i~~~i~  151 (302)
T cd05055          91 IMSHLGNHENIVNLLGACT-----------I----GGPILVITEYCCYGDLLNFLRRKR----ESFLTLEDLLSFSYQVA  151 (302)
T ss_pred             HHHhccCCCCcceEEEEEe-----------c----CCceEEEEEcCCCCcHHHHHHhCC----CCCCCHHHHHHHHHHHH
Confidence            67777 7999997765541           1    124788999987 56666653211    11267888999999999


Q ss_pred             HHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        451 HQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       451 ~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      .++.+ |.++|+|+|||     |+||++.. .+.+|++|||+++.....    ......++..|+||
T Consensus       152 ~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  212 (302)
T cd05055         152 KGMAFLASKNCIHRDLA-----ARNVLLTH-GKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAP  212 (302)
T ss_pred             HHHHHHHHCCeehhhhc-----cceEEEcC-CCeEEECCCcccccccCCCceeecCCCCcccccCCH
Confidence            99999 99999999999     99999964 478999999998732211    11123456678887

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.58  E-value=2.1e-08  Score=98.77  Aligned_cols=152  Identities=18%  Similarity=0.248  Sum_probs=99.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++..+.+|.       .+|+|.+..... ....... .+|  +++.++|+||++....|          .. .+  
T Consensus        16 g~v~~~~~~~~~~-------~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~----------~~-~~--   75 (267)
T cd08229          16 SEVYRATCLLDGV-------PVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASF----------IE-DN--   75 (267)
T ss_pred             eEEEEEeecCCCc-------eEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhhee----------Ee-CC--
Confidence            4456666655665       777876543211 1111111 223  67888999998655444          11 11  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..+++-..  ..+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+
T Consensus        76 --~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~-----p~nili~~-~~~~  145 (267)
T cd08229          76 --ELNIVLELADAGDLSRMIKHFK--KQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIK-----PANVFITA-TGVV  145 (267)
T ss_pred             --eEEEEEEecCCCCHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEEcC-CCCE
Confidence              26678888764 5555553211  122346778889999999999999 99999999999     99999964 5889


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +++|||+++...  .......+++..|+||
T Consensus       146 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~ap  175 (267)
T cd08229         146 KLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  175 (267)
T ss_pred             EECcchhhhccccCCcccccccCCcCccCH
Confidence            999999987332  2223455778888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.58  E-value=1.8e-08  Score=100.89  Aligned_cols=119  Identities=13%  Similarity=0.074  Sum_probs=82.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHh-----hhhccCCChHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQL-----YRDQAGRDADVIYRRA  446 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~i-----y~~ka~~d~~~v~~~~  446 (512)
                      ++..++|+|++.....|           ..+    -.+..+++++. .++..++.-...     .......+...+..++
T Consensus        72 ~l~~l~~~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (296)
T cd05051          72 ILSRLSDPNIARLLGVC-----------TVD----PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMA  136 (296)
T ss_pred             HHHhcCCCCEeEEEEEE-----------ecC----CCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHH
Confidence            68888999998655433           111    13677888876 466666542210     0111246888899999


Q ss_pred             HHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        447 QQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       447 ~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      .|++.++.+ |..+|+|+|||     |+|+++... +.++++|||+++.....    ......++..|+||
T Consensus       137 ~~i~~al~~LH~~~i~H~dlk-----p~Nili~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (296)
T cd05051         137 TQIASGMRYLESLNFVHRDLA-----TRNCLVGKN-YTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAW  201 (296)
T ss_pred             HHHHHHHHHHHHcCccccccc-----hhceeecCC-CceEEccccceeecccCcceeecCcCCCCceecCH
Confidence            999999999 99999999999     999999754 88999999998732111    11233445678877

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG1027|consensus

Probab=98.58  E-value=2.6e-08  Score=109.35  Aligned_cols=141  Identities=16%  Similarity=0.083  Sum_probs=92.6

Q ss_pred             cChHhHHHHhhhhcCCCCCch-HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHH
Q psy17422        348 ENFEEAMKAVNFALIPTTVPS-SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIA  426 (512)
Q Consensus       348 ~n~~eAik~v~~~~~~~~i~~-~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~  426 (512)
                      ++..||+|++-..+-  .+.. ++.-+...-.||||++..-              .| .+.--++..++.|.++++.||+
T Consensus       532 e~R~VAVKrll~e~~--~~A~rEi~lL~eSD~H~NviRyyc--------------~E-~d~qF~YIalELC~~sL~dlie  594 (903)
T KOG1027|consen  532 EGREVAVKRLLEEFF--DFAQREIQLLQESDEHPNVIRYYC--------------SE-QDRQFLYIALELCACSLQDLIE  594 (903)
T ss_pred             CCceehHHHHhhHhH--HHHHHHHHHHHhccCCCceEEEEe--------------ec-cCCceEEEEehHhhhhHHHHHh
Confidence            466889999765321  1111 1222444457999985311              11 1111288999999999999998


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC----CCCeEEEecCCCCCCCCC----
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE----SKLVLKLCDFGSASWSHE----  497 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~----~~~~~Kl~DfGlar~~~~----  497 (512)
                      .. .+......+ ......+.|+..|+.+ |+-+|+|||+|     |+||+++.    .+..++|.|||++...+.    
T Consensus       595 ~~-~~d~~~~~~-i~~~~~l~q~~~GlaHLHsl~iVHRDLk-----PQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS  667 (903)
T KOG1027|consen  595 SS-GLDVEMQSD-IDPISVLSQIASGLAHLHSLKIVHRDLK-----PQNILISVPSADGTLRAKISDFGLSKKLAGGKSS  667 (903)
T ss_pred             cc-ccchhhccc-ccHHHHHHHHHHHHHHHHhcccccccCC-----CceEEEEccCCCcceeEEecccccccccCCCcch
Confidence            74 111111112 3455678999999999 99999999999     99999976    234689999999863211    


Q ss_pred             -CCccCeeeeeeeccC
Q psy17422        498 -NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 -~~~t~yv~tr~YraP  512 (512)
                       +....--||-.|+||
T Consensus       668 ~~r~s~~sGt~GW~AP  683 (903)
T KOG1027|consen  668 FSRLSGGSGTSGWQAP  683 (903)
T ss_pred             hhcccCCCCcccccCH
Confidence             124455677778887

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.58  E-value=3e-08  Score=100.34  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=83.6

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.............+|  ++..+ +|+||+.....+.           ..    -+++.+++++. .++.+++.
T Consensus        52 ~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~i~  116 (307)
T cd05098          52 KVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-----------QD----GPLYVIVEYASKGNLREYLR  116 (307)
T ss_pred             eEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----------cC----CceEEEEecCCCCcHHHHHH
Confidence            5677666432111111111233  46666 7999997665551           11    24778999987 57777775


Q ss_pred             hHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        427 LQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       427 L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .+.-.          ......+...+..++.|++.++.+ |.++++|+|||     |+||++.. ++.+|++|||+++.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlk-----p~Nill~~-~~~~kL~dfg~a~~  189 (307)
T cd05098         117 ARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLA-----ARNVLVTE-DNVMKIADFGLARD  189 (307)
T ss_pred             hcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCccccccc-----HHheEEcC-CCcEEECCCccccc
Confidence            43210          011236677888999999999999 99999999999     99999975 48899999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.58  E-value=3.7e-08  Score=97.24  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=89.5

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+.....   -... .+|  +++.++|+||+.....+           ..  .   ..+.++++|.. ++..++.
T Consensus        32 ~valK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~-----------~~--~---~~~lv~e~~~~~~L~~~~~   92 (262)
T cd05071          32 RVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV-----------SE--E---PIYIVTEYMSKGSLLDFLK   92 (262)
T ss_pred             eEEEEecccCcc---CHHHHHHHHHHHHhCCCCCcceEEEEE-----------CC--C---CcEEEEEcCCCCcHHHHHh
Confidence            577777654221   1122 233  67888999998654333           11  1   25788999874 6655653


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC---ccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE---ITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~---~t~  502 (512)
                      -.    .....+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. .+.+|++|||.++......   ...
T Consensus        93 ~~----~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~-----p~Nill~~-~~~~~L~dfg~~~~~~~~~~~~~~~  162 (262)
T cd05071          93 GE----MGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR-----AANILVGE-NLVCKVADFGLARLIEDNEYTARQG  162 (262)
T ss_pred             hc----cccCCCHHHHHHHHHHHHHHHHHHHHCCccccccC-----cccEEEcC-CCcEEeccCCceeeccccccccccC
Confidence            21    11235778889999999999999 99999999999     99999875 4789999999987332111   112


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..++..|+||
T Consensus       163 ~~~~~~y~~P  172 (262)
T cd05071         163 AKFPIKWTAP  172 (262)
T ss_pred             CcccceecCH
Confidence            3445678887

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.58  E-value=2.4e-08  Score=101.06  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=92.8

Q ss_pred             HhHHHHhhhhcC-CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALI-PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~-~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+..... ...+..-.+|  ++..++|+||+.....|          .+.     -..+.++|++. .+...++.
T Consensus        27 ~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~----------~~~-----~~~~~~~e~~~~~~l~~~l~   91 (314)
T cd08216          27 LVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSF----------IVD-----SELYVVSPLMAYGSCEDLLK   91 (314)
T ss_pred             EEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhhee----------ecC-----CeEEEEEeccCCCCHHHHHH
Confidence            788888754311 1111111233  57788999999765544          221     12678899987 45555554


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC---------
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH---------  496 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~---------  496 (512)
                      -.  +  ....+...+..++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|++|||.+....         
T Consensus        92 ~~--~--~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk-----~~Nili~~-~~~~kl~d~~~~~~~~~~~~~~~~~  161 (314)
T cd08216          92 TH--F--PEGLPELAIAFILKDVLNALDYIHSKGFIHRSVK-----ASHILLSG-DGKVVLSGLRYSVSMIKHGKRQRVV  161 (314)
T ss_pred             Hh--c--ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----cceEEEec-CCceEEecCccceeecccccccccc
Confidence            21  1  1236778888999999999999 99999999999     99999974 5889999999875211         


Q ss_pred             CCCccCeeeeeeeccC
Q psy17422        497 ENEITPYLVSRFYRAP  512 (512)
Q Consensus       497 ~~~~t~yv~tr~YraP  512 (512)
                      ......+.++..|+||
T Consensus       162 ~~~~~~~~~~~~y~aP  177 (314)
T cd08216         162 HDFPKSSVKNLPWLSP  177 (314)
T ss_pred             ccccccccccccccCH
Confidence            1112345677788887

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.57  E-value=3e-08  Score=99.05  Aligned_cols=138  Identities=14%  Similarity=0.107  Sum_probs=90.5

Q ss_pred             hHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      ..+|+|.+..... ...... .+|  +++.++|+|++.....+           ..  .+....+.+++++. .++..++
T Consensus        34 ~~va~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~--~~~~~~~lv~e~~~g~~L~~~l   99 (284)
T cd05079          34 EQVAVKSLKPESG-GNHIADLKKEIEILRNLYHENIVKYKGIC-----------TE--DGGNGIKLIMEFLPSGSLKEYL   99 (284)
T ss_pred             ceEEEEEcCcccc-HHHHHHHHHHHHHHHhCCCCCeeeeeeEE-----------ec--CCCCceEEEEEccCCCCHHHHH
Confidence            3788887653321 111122 223  68888999998755433           11  11112678889886 4555554


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--C---C
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--N---E  499 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--~---~  499 (512)
                      .-     .....+...+..++.|++.++.+ |.++|+|+|+|     |+||++.. ++.++++|||+++....  .   .
T Consensus       100 ~~-----~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlk-----p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~  168 (284)
T cd05079         100 PR-----NKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLA-----ARNVLVES-EHQVKIGDFGLTKAIETDKEYYTV  168 (284)
T ss_pred             Hh-----ccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccc-----hheEEEcC-CCCEEECCCccccccccCccceee
Confidence            21     12246788889999999999999 99999999999     99999975 57899999999873221  1   1


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....++..|+||
T Consensus       169 ~~~~~~~~~y~ap  181 (284)
T cd05079         169 KDDLDSPVFWYAP  181 (284)
T ss_pred             cCCCCCCccccCH
Confidence            1234445557766

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.57  E-value=7.9e-08  Score=94.76  Aligned_cols=123  Identities=14%  Similarity=0.060  Sum_probs=84.4

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      ..+|+|.+...........-.+|  +++.++|+||+...+.++          . .    ...+.+++++. .++..++.
T Consensus        27 ~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----------~-~----~~~~~v~e~~~~~~L~~~l~   91 (269)
T cd05044          27 IRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCL----------L-N----EPQYIIMELMEGGDLLSYLR   91 (269)
T ss_pred             eeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeec----------C-C----CCeEEEEeccCCCcHHHHHH
Confidence            36788887543221111111333  678889999997655541          1 1    12678888886 56666664


Q ss_pred             hHHhhh-hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC-----eEEEecCCCCC
Q psy17422        427 LQQLYR-DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL-----VLKLCDFGSAS  493 (512)
Q Consensus       427 L~~iy~-~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~-----~~Kl~DfGlar  493 (512)
                      -+..-+ .....+...+..++.|++.++.+ |..+++|+|+|     |+||++... +     .+|++|||+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~-----p~nil~~~~-~~~~~~~~~l~dfg~~~  159 (269)
T cd05044          92 DARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLA-----ARNCLVSEK-GYDADRVVKIGDFGLAR  159 (269)
T ss_pred             HhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----hheEEEecC-CCCCCcceEECCccccc
Confidence            322111 11235678888899999999999 99999999999     999999753 4     79999999986

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0193|consensus

Probab=98.57  E-value=2.3e-08  Score=106.46  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=79.0

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH------HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS------ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTR  423 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e------ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~  423 (512)
                      +||||.++....+   |..+++      .++.-+|.||+-....+          .+      .|+..+--.++ +++..
T Consensus       416 dVAVK~Lnv~~pt---~~qlqaFKnEVa~lkkTRH~NIlLFMG~~----------~~------p~~AIiTqwCeGsSLY~  476 (678)
T KOG0193|consen  416 DVAVKLLNVDDPT---PEQLQAFKNEVAVLKKTRHENILLFMGAC----------MN------PPLAIITQWCEGSSLYT  476 (678)
T ss_pred             ceEEEEEecCCCC---HHHHHHHHHHHHHHhhcchhhheeeehhh----------cC------CceeeeehhccCchhhh
Confidence            6888887654221   122322      57888999998322221          11      13434444555 34544


Q ss_pred             HHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        424 YIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       424 yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ++..++   .|  +|......+++|+.+|++| |.++|+|||+|     ..||.+..+ +.+||.|||++.
T Consensus       477 hlHv~e---tk--fdm~~~idIAqQiaqGM~YLHAK~IIHrDLK-----SnNIFl~~~-~kVkIgDFGLat  536 (678)
T KOG0193|consen  477 HLHVQE---TK--FDMNTTIDIAQQIAQGMDYLHAKNIIHRDLK-----SNNIFLHED-LKVKIGDFGLAT  536 (678)
T ss_pred             hccchh---hh--hhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc-----ccceEEccC-CcEEEeccccee
Confidence            544333   34  8899999999999999999 99999999999     999999765 899999999975

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.57  E-value=3.1e-08  Score=100.19  Aligned_cols=129  Identities=17%  Similarity=0.147  Sum_probs=89.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-C-CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-P-TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~-~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.++.       .+|+|.+..... . .....-.+|  ++...+|+||++....|           ...   
T Consensus        15 ~~v~~~~~~~~~~-------~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----------~~~---   73 (305)
T cd05609          15 GAVYLVRHKETRQ-------RFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSF-----------ETK---   73 (305)
T ss_pred             eeEEEEEECCCCc-------EEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEE-----------ecC---
Confidence            4566666666666       777776643211 0 011111222  67888999998765544           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.+++++.. ++..+++      .........+..++.|++.++.+ |.++|.|+|+|     |+||++.. .+.+
T Consensus        74 -~~~~lv~e~~~g~~L~~~l~------~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~NIll~~-~~~~  140 (305)
T cd05609          74 -RHLCMVMEYVEGGDCATLLK------NIGALPVDMARMYFAETVLALEYLHNYGIVHRDLK-----PDNLLITS-MGHI  140 (305)
T ss_pred             -CEEEEEEecCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc-----hHHEEECC-CCCE
Confidence             137889999974 5555553      22346777888899999999999 99999999999     99999964 5889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      |++|||+++
T Consensus       141 ~l~dfg~~~  149 (305)
T cd05609         141 KLTDFGLSK  149 (305)
T ss_pred             EEeeCCCcc
Confidence            999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.57  E-value=3.4e-08  Score=98.49  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||++....+.          ..   +...++.+++++.. ++..++.       +...+...+..++.|++.
T Consensus        59 ~l~~l~h~~i~~~~~~~~----------~~---~~~~~~lv~e~~~~~~l~~~~~-------~~~l~~~~~~~i~~~l~~  118 (283)
T cd05080          59 ILKTLYHENIVKYKGCCS----------EQ---GGKGLQLIMEYVPLGSLRDYLP-------KHKLNLAQLLLFAQQICE  118 (283)
T ss_pred             HHHhCCCCCEeeEEEEEe----------cC---CCceEEEEecCCCCCCHHHHHH-------HcCCCHHHHHHHHHHHHH
Confidence            688899999997654431          11   11126788888874 4444442       224788899999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |.++|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus       119 ~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~~l~dfg~~~~  156 (283)
T cd05080         119 GMAYLHSQHYIHRDLA-----ARNVLLDN-DRLVKIGDFGLAKA  156 (283)
T ss_pred             HHHHHHHCCeeccccC-----hheEEEcC-CCcEEEeecccccc
Confidence            9999 99999999999     99999975 47899999999873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=98.57  E-value=2e-08  Score=100.11  Aligned_cols=148  Identities=18%  Similarity=0.203  Sum_probs=98.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       ..|+|.+.... ...+..-.+|  +++.++|+|++...+.|.          . . .   
T Consensus        19 g~v~~~~~~~~~~-------~~~~k~~~~~~-~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~----------~-~-~---   75 (282)
T cd06643          19 GKVYKAQNKETGV-------LAAAKVIDTKS-EEELEDYMVEIDILASCDHPNIVKLLDAFY----------Y-E-N---   75 (282)
T ss_pred             eEEEEEEECCCCe-------EEEEEEeCCCC-HHHHHHHHHHHHHHHHCCCCCeeeEEEEEe----------e-C-C---
Confidence            5667777766665       45555543210 0011111223  678889999997665551          1 1 1   


Q ss_pred             ceeEEeccccCCh-HHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTADT-TRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~d~-~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++...+ ..++.     +.+...+...+..++.|++.++.+ |..+|+|+|+|     |+|+++.. ++.+|+
T Consensus        76 ~~~~v~e~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlk-----p~nili~~-~~~~kl  144 (282)
T cd06643          76 NLWILIEFCAGGAVDAVML-----ELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLK-----AGNILFTL-DGDIKL  144 (282)
T ss_pred             EEEEEEEecCCCcHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----cccEEEcc-CCCEEE
Confidence            2678888887543 23221     122346778899999999999999 99999999999     99999864 588999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  .......++|..|+||
T Consensus       145 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (282)
T cd06643         145 ADFGVSAKNTRTIQRRDSFIGTPYWMAP  172 (282)
T ss_pred             ccccccccccccccccccccccccccCH
Confidence            9999986321  1223456788888887

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.57  E-value=2.4e-08  Score=99.17  Aligned_cols=147  Identities=15%  Similarity=0.167  Sum_probs=97.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+...........-.+|  ++..++|+||+...+.|.          . ..    
T Consensus        18 ~~vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----------~-~~----   75 (277)
T cd06642          18 GEVYKGIDNRTKE-------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYL----------K-GT----   75 (277)
T ss_pred             eeEEEEEEcCCCe-------EEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccc----------c-CC----
Confidence            4556666655565       6777765422111111111222  678889999997665551          1 11    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++.       +.......+..++.|++.++.+ |.++|+|+|++     |+||++.. .+.+++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~-----p~ni~i~~-~~~~~l  142 (277)
T cd06642          76 KLWIIMEYLGGGSALDLLK-------PGPLEETYIATILREILKGLDYLHSERKIHRDIK-----AANVLLSE-QGDVKL  142 (277)
T ss_pred             ceEEEEEccCCCcHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCC-----hheEEEeC-CCCEEE
Confidence            27789999874 4444432       2346777888999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +|||+++....  .......++..|+||
T Consensus       143 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  170 (277)
T cd06642         143 ADFGVAGQLTDTQIKRNTFVGTPFWMAP  170 (277)
T ss_pred             ccccccccccCcchhhhcccCcccccCH
Confidence            99999873221  112234567778876

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.56  E-value=4.5e-08  Score=95.85  Aligned_cols=147  Identities=18%  Similarity=0.202  Sum_probs=101.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.....+ ..... .+|  .+..++|+|+++....|.          . .    
T Consensus        15 ~~v~~~~~~~~~~-------~~~vk~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~----------~-~----   71 (264)
T cd06623          15 GVVYKVRHKPTGK-------IYALKKIHVDGDE-EFRKQLLRELKTLRSCESPYVVKCYGAFY----------K-E----   71 (264)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeccCcch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEc----------c-C----
Confidence            4566666666676       7777776442211 11112 233  467778999987655441          1 1    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      -.++.+++++. .++..++.      .....+...+..++.|++.++.+ |. .++.|+|++     |+||.+.. ++.+
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~-----~~ni~~~~-~~~~  139 (264)
T cd06623          72 GEISIVLEYMDGGSLADLLK------KVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIK-----PSNLLINS-KGEV  139 (264)
T ss_pred             CeEEEEEEecCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCC-----HHHEEECC-CCCE
Confidence            23788899988 55555543      22457888899999999999999 99 999999999     99999975 5889


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +++|||+++...  ......+.++..|+||
T Consensus       140 ~l~df~~~~~~~~~~~~~~~~~~~~~y~~p  169 (264)
T cd06623         140 KIADFGISKVLENTLDQCNTFVGTVTYMSP  169 (264)
T ss_pred             EEccCccceecccCCCcccceeecccccCH
Confidence            999999987432  2222356778888887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.56  E-value=4.5e-08  Score=97.66  Aligned_cols=113  Identities=10%  Similarity=0.048  Sum_probs=79.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..+.|+||++....+           .  +.   .+..+++++. .++.+++...     ....+...+..++.|++.
T Consensus        62 ~l~~l~h~~iv~~~~~~-----------~--~~---~~~~i~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~qi~~  120 (279)
T cd05111          62 AMGSLDHAYIVRLLGIC-----------P--GA---SLQLVTQLSPLGSLLDHVRQH-----RDSLDPQRLLNWCVQIAK  120 (279)
T ss_pred             HHhcCCCCCcceEEEEE-----------C--CC---ccEEEEEeCCCCcHHHHHHhc-----ccCCCHHHHHHHHHHHHH
Confidence            45677899999765432           1  11   1456677776 5665555421     234678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC-CC---CCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS-HE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~-~~---~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+++|+|||     |+|+++.. .+.+|++|||+++.. +.   ...+...++..|+||
T Consensus       121 ~l~~lH~~~iiH~dlk-----p~nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~p  180 (279)
T cd05111         121 GMYYLEEHRMVHRNLA-----ARNILLKS-DSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMAL  180 (279)
T ss_pred             HHHHHHHCCEeccccC-----cceEEEcC-CCcEEEcCCccceeccCCCcccccCCCCCcccccCH
Confidence            9999 99999999999     99999975 588999999998732 11   112334455677776

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=98.56  E-value=3.4e-08  Score=101.92  Aligned_cols=52  Identities=23%  Similarity=0.250  Sum_probs=46.2

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++.
T Consensus       176 ~~~~~~~~~~~qi~~al~~lH~~~i~H~dik-----p~Nil~~~-~~~~kl~dfg~~~~  228 (343)
T cd05103         176 LTLEDLICYSFQVAKGMEFLASRKCIHRDLA-----ARNILLSE-NNVVKICDFGLARD  228 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCc-----cCeEEEcC-CCcEEEEecccccc
Confidence            4666778899999999999 99999999999     99999975 47899999999863

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=98.55  E-value=4e-08  Score=98.73  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=84.0

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhh------hccCCChHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYR------DQAGRDADVIYRR  445 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~------~ka~~d~~~v~~~  445 (512)
                      ++..++|+|++...+.|+          .     .-+++.++++|. .++..++.......      .....+...+..+
T Consensus        70 ~l~~l~h~~i~~~~~~~~----------~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i  134 (295)
T cd05097          70 IMSRLKNPNIIRLLGVCV----------S-----DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYM  134 (295)
T ss_pred             HHHhCCCCCcCeEEEEEc----------C-----CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHH
Confidence            688899999997766551          1     123778999987 57777765432111      0123567788889


Q ss_pred             HHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        446 AQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       446 ~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      +.|++.++.+ |..+++|+|+|     |+|+++.. ++.+|++|||+++.....    ......++..|+||
T Consensus       135 ~~~i~~al~~lH~~~i~H~dlk-----p~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  200 (295)
T cd05097         135 AVQIASGMKYLASLNFVHRDLA-----TRNCLVGN-HYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAW  200 (295)
T ss_pred             HHHHHHHHHHHHhcCeeccccC-----hhhEEEcC-CCcEEecccccccccccCcceeccCcCcCceeecCh
Confidence            9999999999 99999999999     99999975 478999999998732211    11223345677777

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.55  E-value=7.4e-08  Score=95.36  Aligned_cols=119  Identities=9%  Similarity=0.037  Sum_probs=84.0

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhh---hccCCChHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYR---DQAGRDADVIYRRAQQ  448 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~---~ka~~d~~~v~~~~~q  448 (512)
                      +++.++|+||+.....+           ..    .-+.+.+++++. .++..++.....-.   .........+..++.|
T Consensus        61 ~l~~l~h~~iv~~~~~~-----------~~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  125 (275)
T cd05046          61 MFRKLSHKNVVRLLGLC-----------RE----AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQ  125 (275)
T ss_pred             HHHhcCCcceeeeEEEE-----------CC----CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHH
Confidence            68888999998665443           11    123678888887 46666654322100   0114678889999999


Q ss_pred             HHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        449 LLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       449 lL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      ++.++.+ |.++|+|+|||     |+|+++.. ++.+++.|||+++....   .......++..|+||
T Consensus       126 l~~~l~~LH~~~i~H~dlk-----p~Nili~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~P  187 (275)
T cd05046         126 IALGMDHLSNARFVHRDLA-----ARNCLVSS-QREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAP  187 (275)
T ss_pred             HHHHHHHhhhcCcccCcCc-----cceEEEeC-CCcEEEcccccccccCcccccccCCceeEEeecCh
Confidence            9999999 99999999999     99999975 58899999999763221   122344666778887

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG1026|consensus

Probab=98.55  E-value=8.5e-08  Score=105.88  Aligned_cols=126  Identities=17%  Similarity=0.153  Sum_probs=96.0

Q ss_pred             CcChHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChH
Q psy17422        347 EENFEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTT  422 (512)
Q Consensus       347 ~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~  422 (512)
                      .+..-||||.++..-.. +.-.+. ||  +|..++|||||.+-...            .+   --|++++++||. .|+.
T Consensus       514 ~~~~lVAVK~LKd~a~~-~~~~dF~REaeLla~l~H~nIVrLlGVC------------~~---~~P~~MvFEYm~~GDL~  577 (774)
T KOG1026|consen  514 QDEQLVAVKALKDKAEN-QARQDFRREAELLAELQHPNIVRLLGVC------------RE---GDPLCMVFEYMDHGDLH  577 (774)
T ss_pred             ccceehhHhhhcccccH-HHHHHHHHHHHHHHhccCCCeEEEEEEE------------cc---CCeeEEEEEecccccHH
Confidence            44556899998764321 112222 33  89999999999776655            11   237999999998 8999


Q ss_pred             HHHHhHHhhhhcc--------CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        423 RYIALQQLYRDQA--------GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       423 ~yv~L~~iy~~ka--------~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      .|++...-...+.        ..+..++..++.|+..|..| .++..+|||+-     .+|.+|... -.+||+|||++|
T Consensus       578 eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLA-----TRNCLVge~-l~VKIsDfGLsR  651 (774)
T KOG1026|consen  578 EFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLA-----TRNCLVGEN-LVVKISDFGLSR  651 (774)
T ss_pred             HHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchh-----hhhceeccc-eEEEecccccch
Confidence            9997655543332        25677888999999999999 89999999999     999999754 789999999998


Q ss_pred             C
Q psy17422        494 W  494 (512)
Q Consensus       494 ~  494 (512)
                      .
T Consensus       652 d  652 (774)
T KOG1026|consen  652 D  652 (774)
T ss_pred             h
Confidence            4

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.55  E-value=2.8e-08  Score=98.42  Aligned_cols=137  Identities=14%  Similarity=0.187  Sum_probs=88.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++..+.+|..     ..+|+|.+...........-.+|  ++..+ +||||++..+.|           ...+   
T Consensus         9 g~v~~~~~~~~~~~-----~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~-----------~~~~---   69 (270)
T cd05047           9 GQVLKARIKKDGLR-----MDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC-----------EHRG---   69 (270)
T ss_pred             ceEEEEEEcCCCCe-----eEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEE-----------ecCC---
Confidence            45666666655541     13466655432111111111223  45566 799999766555           1111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhh----------hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYR----------DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~----------~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                       .++.+++++. .++..++.-+....          .........+..++.|++.++.+ |..+|+|+|||     |+|+
T Consensus        70 -~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dik-----p~ni  143 (270)
T cd05047          70 -YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA-----ARNI  143 (270)
T ss_pred             -CceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc-----cceE
Confidence             2678899886 56766664332111          11235677888999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCC
Q psy17422        476 HVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar  493 (512)
                      ++.. ++.+|++|||+++
T Consensus       144 li~~-~~~~kl~dfgl~~  160 (270)
T cd05047         144 LVGE-NYVAKIADFGLSR  160 (270)
T ss_pred             EEcC-CCeEEECCCCCcc
Confidence            9864 5889999999986

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=98.54  E-value=5.3e-08  Score=95.35  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+.....  ....-.+|  +++.++|+|+++..+.+          ..     .-+.+.+++++. .++..+++.
T Consensus        31 ~v~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~~-----~~~~~~v~e~~~~~~L~~~~~~   93 (256)
T cd05039          31 KVAVKCLKDDST--AAQAFLAEASVMTTLRHPNLVQLLGVV----------LQ-----GNPLYIVTEYMAKGSLVDYLRS   93 (256)
T ss_pred             EEEEEEeccchh--HHHHHHHHHHHHHhcCCcceeeeEEEE----------cC-----CCCeEEEEEecCCCcHHHHHHh
Confidence            678887654321  11111334  67888999998765544          11     123778899987 466655542


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS  495 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~  495 (512)
                      ..    ........+..++.|++.++.+ |.++|+|+|||     |.||++.. ++.+|++|||.++..
T Consensus        94 ~~----~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~-----p~Nili~~-~~~~~l~d~g~~~~~  152 (256)
T cd05039          94 RG----RAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLA-----ARNVLVSE-DLVAKVSDFGLAKEA  152 (256)
T ss_pred             cC----CCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcc-----cceEEEeC-CCCEEEccccccccc
Confidence            21    1246788899999999999999 99999999999     99999964 588999999998743

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.54  E-value=4.4e-08  Score=99.00  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=78.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++|+||++....++          ..  .    ...+++++. .++..++.     ..+...+...+..++.|++.
T Consensus        62 ~~~~l~h~niv~~~~~~~----------~~--~----~~~v~e~~~~g~l~~~~~-----~~~~~~~~~~~~~~~~qi~~  120 (303)
T cd05110          62 IMASMDHPHLVRLLGVCL----------SP--T----IQLVTQLMPHGCLLDYVH-----EHKDNIGSQLLLNWCVQIAK  120 (303)
T ss_pred             HHHhCCCCCcccEEEEEc----------CC--C----ceeeehhcCCCCHHHHHH-----hcccCCCHHHHHHHHHHHHH
Confidence            678889999997655442          11  1    235667776 44544443     12224677788899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--C--CccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--N--EITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--~--~~t~yv~tr~YraP  512 (512)
                      ++.+ |.++|+|+|||     |+||++.. .+.+|++|||+++....  .  ......++..|+||
T Consensus       121 ~L~~LH~~~ivH~dik-----p~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~P  180 (303)
T cd05110         121 GMMYLEERRLVHRDLA-----ARNVLVKS-PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMAL  180 (303)
T ss_pred             HHHHHhhcCeeccccc-----cceeeecC-CCceEEccccccccccCcccccccCCCccccccCCH
Confidence            9999 99999999999     99999965 47899999999873221  1  12233456678776

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=98.54  E-value=4.8e-08  Score=95.81  Aligned_cols=96  Identities=16%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||+.....|.           .    .-+++.+++++. .++..++..     .+...+...+..++.+++.
T Consensus        52 ~l~~l~h~~i~~~~~~~~-----------~----~~~~~iv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~~~i~~  111 (256)
T cd05114          52 VMMKLSHPKLVQLYGVCT-----------Q----QKPLYIVTEFMENGCLLNYLRQ-----RQGKLSKDMLLSMCQDVCE  111 (256)
T ss_pred             HHHHCCCCCceeEEEEEc-----------c----CCCEEEEEEcCCCCcHHHHHHh-----CccCCCHHHHHHHHHHHHH
Confidence            688899999997655441           1    124789999987 455444431     1234677888999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |.++|+|+|+|     |+|+++.. ++.+|++|||+++.
T Consensus       112 ~l~~lH~~~i~H~dl~-----p~ni~i~~-~~~~kl~d~g~~~~  149 (256)
T cd05114         112 GMEYLERNSFIHRDLA-----ARNCLVSS-TGVVKVSDFGMTRY  149 (256)
T ss_pred             HHHHHHHCCccccccC-----cceEEEcC-CCeEEECCCCCccc
Confidence            9999 99999999999     99999975 58899999999873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=98.54  E-value=3.9e-08  Score=97.14  Aligned_cols=95  Identities=15%  Similarity=0.115  Sum_probs=74.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||++....+           .    ...+++.+++++.. ++..+++..     ....+...+..++.|++.
T Consensus        58 ~l~~l~h~ni~~~~~~~-----------~----~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~~l~~  117 (269)
T cd05065          58 IMGQFDHPNIIHLEGVV-----------T----KSRPVMIITEFMENGALDSFLRQN-----DGQFTVIQLVGMLRGIAA  117 (269)
T ss_pred             HHHhCCCcCcceEEEEE-----------C----CCCceEEEEecCCCCcHHHHHhhC-----CCCCCHHHHHHHHHHHHH
Confidence            67888999999765544           1    11247888999874 555555421     234678888999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ++.+ |..+++|+|||     |+||++.. ++.+|++|||+++
T Consensus       118 al~~lH~~g~~H~dl~-----p~nili~~-~~~~kl~dfg~~~  154 (269)
T cd05065         118 GMKYLSEMNYVHRDLA-----ARNILVNS-NLVCKVSDFGLSR  154 (269)
T ss_pred             HHHHHHHCCEeecccC-----hheEEEcC-CCcEEECCCcccc
Confidence            9999 99999999999     99999964 5789999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=98.54  E-value=4.2e-08  Score=98.25  Aligned_cols=101  Identities=12%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh----hhccCCChHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY----RDQAGRDADVIYRRAQ  447 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy----~~ka~~d~~~v~~~~~  447 (512)
                      +++.++|+||++....|           ..    ..+.+.+++++. .++..+++-..-.    ......+...+..++.
T Consensus        62 ~l~~l~~~~i~~~~~~~-----------~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (288)
T cd05061          62 VMKGFTCHHVVRLLGVV-----------SK----GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA  126 (288)
T ss_pred             HHHhCCCCCeeeEEEEE-----------cC----CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHH
Confidence            57888999998765554           11    124788999986 6777776532111    0112345667888999


Q ss_pred             HHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        448 QLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       448 qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      |++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++.
T Consensus       127 ~l~~~l~~lH~~~i~H~dik-----p~nili~~-~~~~~L~Dfg~~~~  168 (288)
T cd05061         127 EIADGMAYLNAKKFVHRDLA-----ARNCMVAH-DFTVKIGDFGMTRD  168 (288)
T ss_pred             HHHHHHHHHHhCCCcCCCCC-----hheEEEcC-CCcEEECcCCcccc
Confidence            99999999 99999999999     99999975 58899999999873

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.54  E-value=4.8e-08  Score=95.18  Aligned_cols=152  Identities=21%  Similarity=0.239  Sum_probs=100.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC-CchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       ..|+|.+........ .....+|  +++.++|+||+...+.|          ...     
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~~~-----   71 (256)
T cd08530          14 GSVYKVKRLSDNQ-------FYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAF----------LDG-----   71 (256)
T ss_pred             eeEEEEEECCCCC-------EEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhh----------ccC-----
Confidence            4556666666665       667776654321111 1111333  67888999998665554          111     


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .-.+.+++++. .++..++.-..  ..+...+...+..++.+++.++.+ |..+++|+|++     |.||.+.. ++.+|
T Consensus        72 ~~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~-----~~ni~~~~-~~~~k  143 (256)
T cd08530          72 NKLCIVMEYAPFGDLSKAISKRK--KKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLK-----SANILLVA-NDLVK  143 (256)
T ss_pred             CEEEEEehhcCCCCHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC-----cceEEEec-CCcEE
Confidence            12677888885 46666654321  223446788899999999999999 99999999999     99999975 57899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +.|||+++...........++..|+||
T Consensus       144 l~d~g~~~~~~~~~~~~~~~~~~~~~P  170 (256)
T cd08530         144 IGDLGISKVLKKNMAKTQIGTPHYMAP  170 (256)
T ss_pred             EeeccchhhhccCCcccccCCccccCH
Confidence            999999874322222234566667766

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=98.54  E-value=3.5e-08  Score=97.05  Aligned_cols=116  Identities=17%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.....   -..+ .+|  ++..++|+||+.....|           ... .   .++.+++++. .++..++.
T Consensus        32 ~v~iK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~-~---~~~lv~e~~~~~~L~~~~~   93 (261)
T cd05068          32 PVAVKTLKPGTM---DPKDFLAEAQIMKKLRHPKLIQLYAVC-----------TLE-E---PIYIVTELMKYGSLLEYLQ   93 (261)
T ss_pred             EEEEEeeCCCcc---cHHHHHHHHHHHHHCCCCCccceeEEE-----------ecC-C---CeeeeeecccCCcHHHHHh
Confidence            577777643211   1122 233  67888999998655544           111 1   2678888884 56655553


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      -..    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|++|||+++.
T Consensus        94 ~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~~l~dfg~~~~  152 (261)
T cd05068          94 GGA----GRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLA-----ARNVLVGE-NNICKVADFGLARV  152 (261)
T ss_pred             ccC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCC-----cceEEEcC-CCCEEECCcceEEE
Confidence            211    1246788899999999999999 99999999999     99999975 47899999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.53  E-value=4.2e-08  Score=96.69  Aligned_cols=94  Identities=9%  Similarity=0.093  Sum_probs=73.2

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||++....+           +.  .   ....+++++. .++..++..     .+...+...+..++.|++.
T Consensus        48 ~l~~l~h~~ii~~~~~~-----------~~--~---~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~~i~~  106 (257)
T cd05115          48 IMHQLDNPYIVRMIGVC-----------EA--E---ALMLVMEMASGGPLNKFLSG-----KKDEITVSNVVELMHQVSM  106 (257)
T ss_pred             HHHhcCCCCeEEEEEEE-----------cC--C---CeEEEEEeCCCCCHHHHHHh-----CCCCCCHHHHHHHHHHHHH
Confidence            68889999998765433           11  1   2678888886 455444431     2345788899999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++
T Consensus       107 ~l~~lH~~~i~H~dlk-----p~nil~~~-~~~~kl~dfg~~~  143 (257)
T cd05115         107 GMKYLEGKNFVHRDLA-----ARNVLLVN-QHYAKISDFGLSK  143 (257)
T ss_pred             HHHHHHhcCeeecccc-----hheEEEcC-CCcEEeccCCccc
Confidence            9999 99999999999     99999975 4789999999986

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.53  E-value=7.1e-08  Score=94.06  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++..+. +.       .+|+|.+...........-.+|  +++.++|+||+...+.+.           ..    -
T Consensus         9 g~v~~~~~~~-~~-------~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----------~~----~   65 (251)
T cd05041           9 GDVYKGVLKG-NT-------EVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV-----------QK----Q   65 (251)
T ss_pred             ceEEEEEEeC-CC-------cEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----------cC----C
Confidence            4566666555 55       7788766542211000000122  678889999986555441           11    1


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++. .++..++.     +.....+...+..++.+++.++.+ |.++|+|+||+     |+||++.. ++.+|+
T Consensus        66 ~~~~v~e~~~~~~l~~~l~-----~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~-----p~nili~~-~~~~~l  134 (251)
T cd05041          66 PIYIVMELVPGGSLLTFLR-----KKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLA-----ARNCLVGE-NNVLKI  134 (251)
T ss_pred             CeEEEEEcCCCCcHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcC-----cceEEEcC-CCcEEE
Confidence            3678888886 44444432     112346778888999999999999 99999999999     99999964 588999


Q ss_pred             ecCCCCCC
Q psy17422        487 CDFGSASW  494 (512)
Q Consensus       487 ~DfGlar~  494 (512)
                      +|||+++.
T Consensus       135 ~d~g~~~~  142 (251)
T cd05041         135 SDFGMSRE  142 (251)
T ss_pred             eecccccc
Confidence            99999873

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.53  E-value=2.8e-08  Score=98.85  Aligned_cols=147  Identities=16%  Similarity=0.158  Sum_probs=99.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.++.       .+|+|.+...........-.+|  +++.+.|+|++...+.|.           ..    .
T Consensus        18 ~~vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~----~   75 (277)
T cd06640          18 GEVFKGIDNRTQQ-------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYL-----------KG----T   75 (277)
T ss_pred             eEEEEEEEccCCE-------EEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----------EC----C
Confidence            4566666666665       6777765432111111111223  678889999997766551           11    1


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..+++       +...+...+..++.|++.++.+ |..+++|+|++     |+||++.. ++.+++
T Consensus        76 ~~~lv~e~~~~~~L~~~i~-------~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~-----p~Nil~~~-~~~~~l  142 (277)
T cd06640          76 KLWIIMEYLGGGSALDLLR-------AGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIK-----AANVLLSE-QGDVKL  142 (277)
T ss_pred             EEEEEEecCCCCcHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCC-----hhhEEEcC-CCCEEE
Confidence            37889999875 4444442       1236777888999999999999 99999999999     99999975 578999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ........++.+|+||
T Consensus       143 ~dfg~~~~~~~~~~~~~~~~~~~~y~ap  170 (277)
T cd06640         143 ADFGVAGQLTDTQIKRNTFVGTPFWMAP  170 (277)
T ss_pred             cccccceeccCCccccccccCcccccCH
Confidence            9999986322  1122345677788887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.53  E-value=4.8e-08  Score=98.34  Aligned_cols=101  Identities=14%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhh----------hccCCChH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYR----------DQAGRDAD  440 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~----------~ka~~d~~  440 (512)
                      ++..+ +||||++..+.+           ...+    -++.+++++. .++..++.-.....          ........
T Consensus        55 ~l~~l~~hp~iv~~~~~~-----------~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  119 (297)
T cd05089          55 VLCKLGHHPNIINLLGAC-----------ENRG----YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQ  119 (297)
T ss_pred             HHHhhcCCCchhheEEEE-----------ccCC----cceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHH
Confidence            45555 799998765544           1111    1667888886 46666664322111          11235677


Q ss_pred             HHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        441 VIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       441 ~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .+..++.|++.++.+ |.++|+|+|||     |+|+++.. .+..|++|||+++.
T Consensus       120 ~~~~i~~qi~~al~~lH~~~ivH~dlk-----p~Nill~~-~~~~kl~dfg~~~~  168 (297)
T cd05089         120 QLLQFASDVATGMQYLSEKQFIHRDLA-----ARNVLVGE-NLASKIADFGLSRG  168 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCcCC-----cceEEECC-CCeEEECCcCCCcc
Confidence            888999999999999 99999999999     99999975 47899999999863

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=98.52  E-value=3.8e-08  Score=96.85  Aligned_cols=116  Identities=11%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L  427 (512)
                      .+|+|.+.....  ....-.+|  ++..++||||++..+.+           .    ..-+++.+++++.. ++..++..
T Consensus        30 ~~aik~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~----~~~~~~lv~e~~~~~~l~~~i~~   92 (256)
T cd05113          30 DVAIKMIKEGSM--SEDEFIEEAKVMMKLSHEKLVQLYGVC-----------T----KQRPIYIVTEYMSNGCLLNYLRE   92 (256)
T ss_pred             cEEEEEcCCCcc--cHHHHHHHHHHHhcCCCCCeeeEEEEE-----------c----cCCCcEEEEEcCCCCcHHHHHHh
Confidence            577877653211  11111333  67888999999655433           1    11247888998864 55555532


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+|++|||+++.
T Consensus        93 ~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~nili~~-~~~~kl~d~g~~~~  149 (256)
T cd05113          93 H-----GKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLA-----ARNCLVDD-QGCVKVSDFGLSRY  149 (256)
T ss_pred             c-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC-----cceEEEcC-CCCEEECCCcccee
Confidence            1     2246788899999999999999 99999999999     99999975 47899999999873

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=98.52  E-value=4.7e-08  Score=96.43  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=75.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++|+||++..+.+           ..    .-+++.+++++.. ++..++...     ....+...+..++.|++.
T Consensus        58 ~l~~l~h~~i~~~~~~~-----------~~----~~~~~iv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~  117 (266)
T cd05033          58 IMGQFDHPNIIRLEGVV-----------TK----SRPVMIITEYMENGSLDKFLREN-----DGKFTVGQLVGMLRGIAS  117 (266)
T ss_pred             HHHhCCCCCcceEeEEE-----------ec----CCceEEEEEcCCCCCHHHHHHhc-----cCCCCHHHHHHHHHHHHH
Confidence            67888999999765544           11    1237788999874 566665421     224678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |.++|+|+|||     |+||++.. ++.++++|||+++.
T Consensus       118 ~l~~Lh~~~i~H~di~-----p~nili~~-~~~~~l~dfg~~~~  155 (266)
T cd05033         118 GMKYLSEMNYVHRDLA-----ARNILVNS-NLVCKVSDFGLSRR  155 (266)
T ss_pred             HHHHHHhCCcccCCCC-----cceEEEcC-CCCEEECccchhhc
Confidence            9999 99999999999     99999975 58899999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.52  E-value=5.2e-08  Score=97.09  Aligned_cols=119  Identities=16%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+..... .....-.+|  ++..++|+||+.....++          .   .+...++.+++++. .++..++.-
T Consensus        35 ~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~---~~~~~~~lv~e~~~~~~L~~~l~~  100 (284)
T cd05081          35 VVAVKKLQHSTA-EHLRDFEREIEILKSLQHDNIVKYKGVCY----------S---AGRRNLRLVMEYLPYGSLRDYLQK  100 (284)
T ss_pred             EEEEEEeccCCH-HHHHHHHHHHHHHHhCCCCCeeEEEEEEc----------c---CCCCceEEEEEecCCCCHHHHHHh
Confidence            678877643210 001011122  678889999997655431          0   11123678899986 566666531


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                           .+...+...+..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++.
T Consensus       101 -----~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlk-----p~nili~~-~~~~~l~dfg~~~~  157 (284)
T cd05081         101 -----HRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLA-----TRNILVES-ENRVKIGDFGLTKV  157 (284)
T ss_pred             -----cCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC-----HhhEEECC-CCeEEECCCccccc
Confidence                 12346778888999999999999 99999999999     99999965 47899999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.52  E-value=4.6e-08  Score=97.13  Aligned_cols=144  Identities=13%  Similarity=0.109  Sum_probs=98.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+.+.++.+|.       ..|+|.+..... ......+++++.  +|+|+++....|+          . .+    .+
T Consensus        30 g~v~~~~~~~~~~-------~~~~k~~~~~~~-~~~e~~~~~~~~--~h~~iv~~~~~~~----------~-~~----~~   84 (267)
T PHA03390         30 GKVSVLKHKPTQK-------LFVQKIIKAKNF-NAIEPMVHQLMK--DNPNFIKLYYSVT----------T-LK----GH   84 (267)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEehhhc-chhhHHHHHHhh--cCCCEEEEEEEEe----------c-CC----ee
Confidence            6677777777776       556666543211 111111222322  6999997766662          1 11    37


Q ss_pred             eEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      +.+++++. .++..+++      .+...+...+..++.|+++++.+ |..+|+|+|||     |+|+++....+.++++|
T Consensus        85 ~iv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~nil~~~~~~~~~l~d  153 (267)
T PHA03390         85 VLIMDYIKDGDLFDLLK------KEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIK-----LENVLYDRAKDRIYLCD  153 (267)
T ss_pred             EEEEEcCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----HHHEEEeCCCCeEEEec
Confidence            88999986 56666654      22256788999999999999999 99999999999     99999976533899999


Q ss_pred             CCCCCCCCCCCccCeeeeeeeccC
Q psy17422        489 FGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ||+++.....  ..+.++..|+||
T Consensus       154 fg~~~~~~~~--~~~~~~~~y~aP  175 (267)
T PHA03390        154 YGLCKIIGTP--SCYDGTLDYFSP  175 (267)
T ss_pred             CccceecCCC--ccCCCCCcccCh
Confidence            9998743221  234567778887

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.52  E-value=5.3e-08  Score=95.62  Aligned_cols=97  Identities=21%  Similarity=0.205  Sum_probs=70.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|||++.....++          ..++   . .+.++|++. .++..++.-     .........+..++.|++.
T Consensus        49 ~l~~l~h~~iv~~~~~~~----------~~~~---~-~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~~~i~~  109 (262)
T cd05058          49 IMKDFSHPNVLSLLGICL----------PSEG---S-PLVVLPYMKHGDLRNFIRS-----ETHNPTVKDLIGFGLQVAK  109 (262)
T ss_pred             HHccCCCCCcceEEEEee----------cCCC---C-cEEEEecCCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHH
Confidence            578889999986554331          1111   1 456788886 455555531     1223455667788899999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus       110 ~l~~lH~~~i~H~dlk-----~~nili~~-~~~~kl~dfg~~~~  147 (262)
T cd05058         110 GMEYLASKKFVHRDLA-----ARNCMLDE-SFTVKVADFGLARD  147 (262)
T ss_pred             HHHHHHhCCccccccC-----cceEEEcC-CCcEEECCcccccc
Confidence            9999 99999999999     99999975 47899999999873

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.52  E-value=7e-08  Score=94.45  Aligned_cols=135  Identities=14%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+...... ..... .+|  ++..++|+||+...+.+.          .      .+++.+++++. .++..++.
T Consensus        25 ~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~------~~~~~v~e~~~~~~L~~~l~   87 (257)
T cd05040          25 PVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENLIRLYGVVL----------T------HPLMMVTELAPLGSLLDRLR   87 (257)
T ss_pred             EEEEeecCCcccH-HHHHHHHHHHHHHhhcCCCCccceeEEEc----------C------CeEEEEEEecCCCcHHHHHH
Confidence            4677776543221 11111 223  578889999997655541          1      23678888886 45555543


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--CC---c
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--NE---I  500 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--~~---~  500 (512)
                      -..    ....+...+..++.|++.++.+ |.++++|+|||     |+||++... +.+|++|||+++....  ..   .
T Consensus        88 ~~~----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~-----p~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~  157 (257)
T cd05040          88 KDA----LGHFLISTLCDYAVQIANGMRYLESKRFIHRDLA-----ARNILLASD-DKVKIGDFGLMRALPQNEDHYVME  157 (257)
T ss_pred             hcc----cccCcHHHHHHHHHHHHHHHHHHHhCCccccccC-----cccEEEecC-CEEEeccccccccccccccceecc
Confidence            211    0246788999999999999999 99999999999     999999765 8899999999873211  11   1


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      ....++..|+||
T Consensus       158 ~~~~~~~~y~~p  169 (257)
T cd05040         158 EHLKVPFAWCAP  169 (257)
T ss_pred             cCCCCCceecCH
Confidence            123455567776

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=98.52  E-value=5e-08  Score=95.81  Aligned_cols=115  Identities=15%  Similarity=0.129  Sum_probs=82.9

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+.....+.           ..    -.++.++++|. .++..++...    .........+..++.|++.
T Consensus        54 ~l~~l~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~~l~~  114 (261)
T cd05072          54 LMKTLQHDKLVRLYAVVT-----------KE----EPIYIITEYMAKGSLLDFLKSD----EGGKVLLPKLIDFSAQIAE  114 (261)
T ss_pred             HHHhCCCCCeeeEEEEEc-----------CC----CCcEEEEecCCCCcHHHHHHHh----cCCCCCHHHHHHHHHHHHH
Confidence            688889999997654441           11    12678889886 4665555322    1234677788889999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+++|+|||     |+||++.. ++.+|+.|||+++.....   ......++..|+||
T Consensus       115 ~l~~LH~~~i~H~dl~-----p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  173 (261)
T cd05072         115 GMAYIERKNYIHRDLR-----AANVLVSE-SLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAP  173 (261)
T ss_pred             HHHHHHHCCeeccccc-----hhhEEecC-CCcEEECCCccceecCCCceeccCCCccceecCCH
Confidence            9999 99999999999     99999975 588999999998743221   12233455678877

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.52  E-value=7.3e-08  Score=96.43  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLL  450 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL  450 (512)
                      ++..+ +|+||+.....|           ..+    ..++.++++|.. ++..++.      .+.......+..++.|++
T Consensus        57 ~l~~l~~~~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~qi~  115 (290)
T cd05613          57 VLEHIRQSPFLVTLHYAF-----------QTD----TKLHLILDYINGGELFTHLS------QRERFKEQEVQIYSGEIV  115 (290)
T ss_pred             HHHhcccCCChhceeeEe-----------ecC----CeEEEEEecCCCCcHHHHHH------HcCCCCHHHHHHHHHHHH
Confidence            56666 589998765555           111    136788888874 4444442      233467788889999999


Q ss_pred             HHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        451 HQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       451 ~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      .++.+ |..+++|+||+     |+||++.. .+.+|++|||+++...   ......++++..|+||
T Consensus       116 ~al~~lH~~~i~H~dl~-----p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  175 (290)
T cd05613         116 LALEHLHKLGIIYRDIK-----LENILLDS-NGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAP  175 (290)
T ss_pred             HHHHHHHhCCeeccCCC-----HHHeEECC-CCCEEEeeCccceecccccccccccccCCcccCCh
Confidence            99999 99999999999     99999975 4889999999987322   1223346788889887

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=98.51  E-value=6.9e-08  Score=95.37  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++||||++....|+           ..    -+++.+++++. .++..++...     ....+...+..++.|++.
T Consensus        58 ~l~~l~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~i~~~i~~  117 (267)
T cd05066          58 IMGQFDHPNIIHLEGVVT-----------KS----KPVMIVTEYMENGSLDAFLRKH-----DGQFTVIQLVGMLRGIAS  117 (267)
T ss_pred             HHHhCCCCCcceEEEEEe-----------cC----CccEEEEEcCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHH
Confidence            577889999997655541           11    13678899886 4665555321     124677888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..+|+|+|+|     |+|+++.. ++.++++|||+++.
T Consensus       118 ~l~~lH~~~i~h~dlk-----p~nili~~-~~~~~l~dfg~~~~  155 (267)
T cd05066         118 GMKYLSDMGYVHRDLA-----ARNILVNS-NLVCKVSDFGLSRV  155 (267)
T ss_pred             HHHHHHHCCEeehhhc-----hhcEEECC-CCeEEeCCCCcccc
Confidence            9999 99999999999     99999865 58899999999873

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.50  E-value=7.5e-08  Score=98.04  Aligned_cols=147  Identities=17%  Similarity=0.154  Sum_probs=100.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+..... ....... .+|  +++.++|+|++.....+          .. . . 
T Consensus        39 ~~v~~~~~~~~~~-------~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~----------~~-~-~-   98 (317)
T cd06635          39 GAVYFARDVRTNE-------VVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCY----------LR-E-H-   98 (317)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEE----------ee-C-C-
Confidence            5667777766776       788887653211 1111112 233  57888999998765544          11 1 1 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        ..+.+++++..++..++.     ..+...+...+..++.+++.++.+ |.++|+|+|++     |+||++.. ++.+|
T Consensus        99 --~~~lv~e~~~g~l~~~~~-----~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~-----p~Nil~~~-~~~~k  165 (317)
T cd06635          99 --TAWLVMEYCLGSASDLLE-----VHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK-----AGNILLTE-PGQVK  165 (317)
T ss_pred             --eEEEEEeCCCCCHHHHHH-----HhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----cccEEECC-CCCEE
Confidence              267889998776544432     223446788888999999999999 99999999999     99999865 58899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++.....  .....++..|+||
T Consensus       166 l~dfg~~~~~~~--~~~~~~~~~y~aP  190 (317)
T cd06635         166 LADFGSASIASP--ANSFVGTPYWMAP  190 (317)
T ss_pred             EecCCCccccCC--cccccCCccccCh
Confidence            999999764321  1234566777776

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.50  E-value=3.7e-08  Score=97.93  Aligned_cols=103  Identities=15%  Similarity=0.078  Sum_probs=76.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh-hhccCCChHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY-RDQAGRDADVIYRRAQQLL  450 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy-~~ka~~d~~~v~~~~~qlL  450 (512)
                      +++.++|+||++..+.+          .+     ..+.+.+++++. .++..++.-.... ......+...+..++.|++
T Consensus        62 ~l~~l~~~~i~~~~~~~----------~~-----~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~  126 (277)
T cd05036          62 IMSKFNHQNIVRLIGVS----------FE-----RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVA  126 (277)
T ss_pred             HHHhCCCCCEeeEEEEE----------cc-----CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence            67888999999765544          11     123678899986 5777776543321 1123467888889999999


Q ss_pred             HHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEEecCCCCCCC
Q psy17422        451 HQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKLCDFGSASWS  495 (512)
Q Consensus       451 ~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl~DfGlar~~  495 (512)
                      .++.+ |..+++|+|||     |+||++...  +..+|++|||+++..
T Consensus       127 ~~l~~LH~~~ivH~dlk-----p~nil~~~~~~~~~~kl~dfg~~~~~  169 (277)
T cd05036         127 KGCKYLEENHFIHRDIA-----ARNCLLTCKGPGRVAKIADFGMARDI  169 (277)
T ss_pred             HHHHHHHHCCEeecccc-----hheEEEeccCCCcceEeccCcccccc
Confidence            99999 99999999999     999999643  236899999998743

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.50  E-value=5.3e-08  Score=95.80  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=98.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCC-C
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEG-N  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~-~  405 (512)
                      +.|+++.++.++.       ..|+|.+.....   .... .+|  +++.+ .|+||++..+.|.          .... .
T Consensus        20 ~~v~~~~~~~~~~-------~~~~k~~~~~~~---~~~~~~~e~~~l~~~~~h~~i~~~~~~~~----------~~~~~~   79 (275)
T cd06608          20 GKVYKARHKKTGQ-------LVAIKIMDIIED---EEEEIKEEYNILRKYSNHPNIATFYGAFI----------KKNPPG   79 (275)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEecCch---hHHHHHHHHHHHHHhcCCCChheEEEEEE----------ecCCCC
Confidence            3455555555555       566665432111   1111 223  45655 6999997665551          1100 0


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      ...-++.+++++.. ++..++.  .....+...+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~-----p~ni~~~~-~~~  151 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLVK--GLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIK-----GQNILLTK-NAE  151 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHHH--HHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC-----HHHEEEcc-CCe
Confidence            11126788899874 4444443  222223457888999999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...  ......+.++..|+||
T Consensus       152 ~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aP  182 (275)
T cd06608         152 VKLVDFGVSAQLDSTLGRRNTFIGTPYWMAP  182 (275)
T ss_pred             EEECCCccceecccchhhhcCccccccccCH
Confidence            9999999986321  2223446678888887

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.50  E-value=8.7e-08  Score=93.33  Aligned_cols=136  Identities=18%  Similarity=0.129  Sum_probs=88.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+...+.   .....+|+|.+...........-..|  ++..++|+||+.....|.          . .    -
T Consensus        13 g~v~~~~~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~----------~-~----~   74 (258)
T smart00219       13 GEVYKGTLKGLSG---EKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCT----------E-E----E   74 (258)
T ss_pred             cceEEEEecCCCC---CCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEc----------C-C----C
Confidence            4455555554431   11236788877543211111111222  567789999986655441          1 1    1


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++.. ++.+++.-...    ...+...+..++.|++.++.+ |..+++|+||+     |+||++.. .+.+++
T Consensus        75 ~~~~i~e~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~-----~~nil~~~-~~~~~l  144 (258)
T smart00219       75 PLMIVMEYMEGGDLLDYLRKNRP----KELSLSDLLSFALQIARGMEYLESKNFIHRDLA-----ARNCLVGE-NLVVKI  144 (258)
T ss_pred             eeEEEEeccCCCCHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhcCCeeecccc-----cceEEEcc-CCeEEE
Confidence            26777888764 55555432211    116788999999999999999 99999999999     99999975 478999


Q ss_pred             ecCCCCCC
Q psy17422        487 CDFGSASW  494 (512)
Q Consensus       487 ~DfGlar~  494 (512)
                      +|||+++.
T Consensus       145 ~dfg~~~~  152 (258)
T smart00219      145 SDFGLSRD  152 (258)
T ss_pred             cccCCcee
Confidence            99999873

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=98.49  E-value=5.2e-08  Score=96.90  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=97.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       .+|+|.+...........-.+|  ++..++|+||+.....|.           ...    
T Consensus        18 ~~vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----------~~~----   75 (277)
T cd06641          18 GEVFKGIDNRTQK-------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYL-----------KDT----   75 (277)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEE-----------eCC----
Confidence            4566666555555       6777765322111111111122  677889999997655441           111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++.. ++..++.       +...+...+..++.+++.++.+ |..+++|+|++     |.|+++.. ++.+++
T Consensus        76 ~~~lv~e~~~~~~l~~~i~-------~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~-----p~Ni~i~~-~~~~~l  142 (277)
T cd06641          76 KLWIIMEYLGGGSALDLLE-------PGPLDETQIATILREILKGLDYLHSEKKIHRDIK-----AANVLLSE-HGEVKL  142 (277)
T ss_pred             eEEEEEEeCCCCcHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCC-----HHhEEECC-CCCEEE
Confidence            26788998874 4444442       2246788899999999999999 99999999999     99999864 588999


Q ss_pred             ecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +|||++.....  .......++.+|+||
T Consensus       143 ~dfg~~~~~~~~~~~~~~~~~~~~y~~P  170 (277)
T cd06641         143 ADFGVAGQLTDTQIKRNTFVGTPFWMAP  170 (277)
T ss_pred             eecccceecccchhhhccccCCccccCh
Confidence            99999863221  112345677788887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.48  E-value=1.1e-07  Score=92.76  Aligned_cols=151  Identities=17%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.....|.       .+|+|.+.....+...... .+|  +++.++|+|+++..+.+          . ..    
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~----------~-~~----   71 (257)
T cd08225          14 GKIYLAKAKSDSE-------HCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASF----------Q-EN----   71 (257)
T ss_pred             ceEEEEEEcCCCc-------eEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhhee----------c-cC----
Confidence            4566666666666       6677776442111111111 233  67888999998654443          1 11    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+++++. .++..++...    .....+...+..++.|++.++.+ |..+|+|+|+|     |+||++......+|
T Consensus        72 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~-----~~nil~~~~~~~~~  142 (257)
T cd08225          72 GRLFIVMEYCDGGDLMKRINRQ----RGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIK-----SQNIFLSKNGMVAK  142 (257)
T ss_pred             CeEEEEEecCCCCcHHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----HHHEEEcCCCCeEE
Confidence            13778888886 4555555321    11235778899999999999999 99999999999     99999976545679


Q ss_pred             EecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      ++|||.+.....  .......++..|+||
T Consensus       143 l~d~~~~~~~~~~~~~~~~~~~~~~~~ap  171 (257)
T cd08225         143 LGDFGIARQLNDSMELAYTCVGTPYYLSP  171 (257)
T ss_pred             ecccccchhccCCcccccccCCCccccCH
Confidence            999999863221  122234577778877

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.48  E-value=8.6e-08  Score=97.53  Aligned_cols=147  Identities=17%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+...... ...... .+|  +++.++|+|++...+.|.           .. . 
T Consensus        35 g~v~~~~~~~~~~-------~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~-~-   94 (313)
T cd06633          35 GAVYFATNSHTNE-------VVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYL-----------KE-H-   94 (313)
T ss_pred             eEEEEEEECCCCc-------EEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEE-----------eC-C-
Confidence            5677777766676       7788776432111 111111 233  678889999997665541           11 1 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        -.+.+++++..++..++..     .+...+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+|
T Consensus        95 --~~~lv~e~~~~~l~~~l~~-----~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~-----p~nili~~-~~~~k  161 (313)
T cd06633          95 --TAWLVMEYCLGSASDLLEV-----HKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK-----AGNILLTE-PGQVK  161 (313)
T ss_pred             --EEEEEEecCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----hhhEEECC-CCCEE
Confidence              2678888887665554431     22346777888899999999999 99999999999     99999965 47899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++.....  ....+++..|+||
T Consensus       162 L~dfg~~~~~~~--~~~~~~~~~y~aP  186 (313)
T cd06633         162 LADFGSASKSSP--ANSFVGTPYWMAP  186 (313)
T ss_pred             EeecCCCcccCC--CCCccccccccCh
Confidence            999999764321  2345677788887

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=98.48  E-value=5.5e-08  Score=97.89  Aligned_cols=145  Identities=17%  Similarity=0.250  Sum_probs=98.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+.......  ... .+|  +++.++|||++...+.|          ...  .  
T Consensus        33 g~v~~~~~~~~~~-------~v~iK~~~~~~~~~--~~~~~~e~~~l~~l~hp~i~~~~~~~----------~~~--~--   89 (293)
T cd06647          33 GTVYTAIDVATGQ-------EVAIKQMNLQQQPK--KELIINEILVMRENKHPNIVNYLDSY----------LVG--D--   89 (293)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEeccccchH--HHHHHHHHHHHhhcCCCCeeehhhee----------eeC--C--
Confidence            4566666665665       67777654321111  111 233  57888999998765544          111  1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       ..+.+++++.. ++..++.       +...+...+..++.|++.++.+ |..++.|+|++     |+||++.. ++.+|
T Consensus        90 -~~~lv~e~~~~~~L~~~~~-------~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~-----p~Nili~~-~~~~k  155 (293)
T cd06647          90 -ELWVVMEYLAGGSLTDVVT-------ETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----SDNILLGM-DGSVK  155 (293)
T ss_pred             -cEEEEEecCCCCcHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCC-----HHHEEEcC-CCCEE
Confidence             26788888874 5444442       1235677888999999999999 99999999999     99999975 47899


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++...  .........++..|+||
T Consensus       156 L~dfg~~~~~~~~~~~~~~~~~~~~y~~P  184 (293)
T cd06647         156 LTDFGFCAQITPEQSKRSTMVGTPYWMAP  184 (293)
T ss_pred             EccCcceecccccccccccccCChhhcCc
Confidence            9999987632  12223345678888887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=98.48  E-value=7.7e-08  Score=94.90  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=73.4

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++|+|+++....|.           ..    -+.+.+++++.. ++..++..     .....+...+..++.+++.
T Consensus        59 ~l~~l~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~~~l~~  118 (268)
T cd05063          59 IMGQFSHHNIIRLEGVVT-----------KF----KPAMIITEYMENGALDKYLRD-----HDGEFSSYQLVGMLRGIAA  118 (268)
T ss_pred             HHhcCCCCCeeEEEEEEc-----------cC----CCcEEEEEcCCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHH
Confidence            678889999987665551           11    236788998874 55444421     1234677788899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ++.+ |..+|+|+|+|     |+||++.. ++.+|++|||+++
T Consensus       119 al~~lH~~~i~H~dlk-----p~Nili~~-~~~~kl~dfg~~~  155 (268)
T cd05063         119 GMKYLSDMNYVHRDLA-----ARNILVNS-NLECKVSDFGLSR  155 (268)
T ss_pred             HHHHHHHCCeeccccc-----hhhEEEcC-CCcEEECCCccce
Confidence            9999 99999999999     99999975 5789999999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.48  E-value=4.9e-08  Score=98.13  Aligned_cols=149  Identities=17%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............+++  ++... .|+||+...+.|          .. ..   
T Consensus        29 ~~v~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~----------~~-~~---   87 (296)
T cd06618          29 GQVYKMRFKKTGH-------VMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYF----------IT-DS---   87 (296)
T ss_pred             eEEEEEEECCCCe-------EEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheee----------ec-CC---
Confidence            5677778777777       7888887543211111111233  23333 489988655544          11 11   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+++++...+.++....     ....+...+..++.|++.++.+ |. .+|+|+|++     |+||++.. ++.+|
T Consensus        88 -~~~~v~e~~~~~l~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~-----p~nill~~-~~~~k  155 (296)
T cd06618          88 -DVFICMELMSTCLDKLLKRI-----QGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVK-----PSNILLDA-SGNVK  155 (296)
T ss_pred             -eEEEEeeccCcCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCc-----HHHEEEcC-CCCEE
Confidence             26788888876554444321     2246777888899999999999 96 699999999     99999974 58899


Q ss_pred             EecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++|||++.... ........++..|+||
T Consensus       156 L~dfg~~~~~~~~~~~~~~~~~~~y~aP  183 (296)
T cd06618         156 LCDFGISGRLVDSKAKTRSAGCAAYMAP  183 (296)
T ss_pred             ECccccchhccCCCcccCCCCCccccCH
Confidence            99999986321 1112223455667776

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=98.48  E-value=8.1e-08  Score=94.57  Aligned_cols=113  Identities=14%  Similarity=0.198  Sum_probs=82.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||++..+.|           ...    --++.+++++.. ++..++      ++....+...+..++.|++.
T Consensus        55 ~l~~l~~~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l------~~~~~~~~~~~~~~~~qi~~  113 (265)
T cd06631          55 LLKSLKHVNIVQYLGTC-----------LDD----NTISIFMEFVPGGSISSIL------NRFGPLPEPVFCKYTKQILD  113 (265)
T ss_pred             HHHhcCCCCEeeEeeEe-----------ecC----CeEEEEEecCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHH
Confidence            67888999998765544           111    126788888864 544444      23334677888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--------CCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--------~~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|++     |+||++.. ++.++++|||+++...        ......+.++..|+||
T Consensus       114 ~l~~lH~~~i~H~dl~-----p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (265)
T cd06631         114 GVAYLHNNCVVHRDIK-----GNNVMLMP-NGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAP  177 (265)
T ss_pred             HHHHHHhCCcccCCcC-----HHhEEECC-CCeEEeccchhhHhhhhccccccccccccccCCCccccCh
Confidence            9999 99999999999     99999974 5889999999976211        1123345678888887

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.48  E-value=3e-08  Score=103.29  Aligned_cols=139  Identities=14%  Similarity=0.015  Sum_probs=87.4

Q ss_pred             cchhhhcccc-CCCCCCCcChHhHHHHhhhhcC---CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDE-NGIPLSEENFEEAMKAVNFALI---PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~-~~~~~~~~n~~eAik~v~~~~~---~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++. +|.       .+|+|.+.....   ....... .+|  +|+.++|+|++..  .++            .
T Consensus        32 g~Vy~a~~~~~~~~-------~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~--l~~------------~   90 (365)
T PRK09188         32 STVERGYFAGDPGT-------ARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQ--LLA------------T   90 (365)
T ss_pred             EEEEEEEEcCCCCe-------EEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcE--EEE------------c
Confidence            6777777665 454       468876542211   0111111 244  7888999998731  111            0


Q ss_pred             CCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHH-HhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQV-KLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdI-K~Fc~n~~nIll~~~~  481 (512)
                      +.    .+.+|++|...+-...      . +  ..   ...++.+++.++.+ |..+|+|||| |     |+||++.. .
T Consensus        91 ~~----~~LVmE~~~G~~L~~~------~-~--~~---~~~~~~~i~~aL~~lH~~gIiHrDL~K-----P~NILv~~-~  148 (365)
T PRK09188         91 GK----DGLVRGWTEGVPLHLA------R-P--HG---DPAWFRSAHRALRDLHRAGITHNDLAK-----PQNWLMGP-D  148 (365)
T ss_pred             CC----cEEEEEccCCCCHHHh------C-c--cc---hHHHHHHHHHHHHHHHHCCCeeCCCCC-----cceEEEcC-C
Confidence            11    5788999876432211      1 1  11   13567899999999 9999999999 9     99999964 4


Q ss_pred             CeEEEecCCCCCCCC-C---------CCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSH-E---------NEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~-~---------~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+|+... .         +..+..+++..|.||
T Consensus       149 ~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p  189 (365)
T PRK09188        149 GEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAP  189 (365)
T ss_pred             CCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCc
Confidence            789999999987221 1         112445666667776

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.48  E-value=8.1e-08  Score=93.33  Aligned_cols=148  Identities=18%  Similarity=0.182  Sum_probs=95.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+...+.       .+|+|.............. .+|  ++..++|+|++.....+           ...    
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----------~~~----   71 (254)
T cd06627          14 GVVYKGLNLETGD-------FVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSI-----------ETS----   71 (254)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEE-----------EeC----
Confidence            3445555555555       5677766543211111111 222  56778899988654443           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -..+.+++++.. ++..++      ......+...+..++.|++.++.+ |..+|+|+|++     |.||.+.. ++.++
T Consensus        72 ~~~~~v~e~~~~~~L~~~~------~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~ni~i~~-~~~~~  139 (254)
T cd06627          72 DSLYIILEYAENGSLRQII------KKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIK-----AANILTTK-DGVVK  139 (254)
T ss_pred             CEEEEEEecCCCCcHHHHH------HhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC-----HHHEEECC-CCCEE
Confidence            126678888864 443333      333457888999999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....  .......++..|+||
T Consensus       140 l~d~~~~~~~~~~~~~~~~~~~~~~y~~p  168 (254)
T cd06627         140 LADFGVATKLNDVSKDDASVVGTPYWMAP  168 (254)
T ss_pred             EeccccceecCCCcccccccccchhhcCH
Confidence            999999873221  112334566677776

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.48  E-value=6.4e-08  Score=94.88  Aligned_cols=115  Identities=15%  Similarity=0.177  Sum_probs=80.6

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+|+++....+          .... +   .++.+++++. .++.+++.-.    .....+...+..++.|++.
T Consensus        52 ~l~~l~~~~i~~~~~~~----------~~~~-~---~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~~i~~  113 (256)
T cd05082          52 VMTQLRHSNLVQLLGVI----------VEEK-G---GLYIVTEYMAKGSLVDYLRSR----GRSVLGGDCLLKFSLDVCE  113 (256)
T ss_pred             HHHhCCCCCeeeEEEEE----------EcCC-C---ceEEEEECCCCCcHHHHHHhc----CCCCCCHHHHHHHHHHHHH
Confidence            67888999998755433          1111 1   2678899997 4665554321    1123567788899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++...... .....+..|+||
T Consensus       114 ~l~~lH~~~i~H~dlk-----p~nil~~~-~~~~kl~dfg~~~~~~~~~-~~~~~~~~y~aP  168 (256)
T cd05082         114 AMEYLEANNFVHRDLA-----ARNVLVSE-DNVAKVSDFGLTKEASSTQ-DTGKLPVKWTAP  168 (256)
T ss_pred             HHHHHHhCCEeccccc-----hheEEEcC-CCcEEecCCccceeccccC-CCCccceeecCH
Confidence            9999 99999999999     99999975 5889999999987432111 122334567776

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=98.48  E-value=6.5e-08  Score=94.29  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=73.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+...+.+           ...    -+.+.+++++. .++..++..     .....+...+..++.+++.
T Consensus        45 ~l~~l~h~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~~~i~~  104 (250)
T cd05085          45 ILKQYDHPNIVKLIGVC-----------TQR----QPIYIVMELVPGGDFLSFLRK-----KKDELKTKQLVKFALDAAA  104 (250)
T ss_pred             HHHhCCCCCcCeEEEEE-----------ecC----CccEEEEECCCCCcHHHHHHh-----cCCCCCHHHHHHHHHHHHH
Confidence            67888999999765544           111    13678889886 455444431     1234678888999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |.++++|+|+|     |+|+++.. ++.+|++|||+++.
T Consensus       105 ~l~~lH~~~~~H~dl~-----p~nili~~-~~~~~l~d~g~~~~  142 (250)
T cd05085         105 GMAYLESKNCIHRDLA-----ARNCLVGE-NNVLKISDFGMSRQ  142 (250)
T ss_pred             HHHHHHhCCeeecccC-----hheEEEcC-CCeEEECCCcccee
Confidence            9999 99999999999     99999965 58899999999863

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.48  E-value=6.2e-08  Score=97.03  Aligned_cols=101  Identities=13%  Similarity=0.102  Sum_probs=74.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh------------------hh
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY------------------RD  433 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy------------------~~  433 (512)
                      ++..++||||++..+.|           ..    .-+.+.+++++. .++..++.-....                  ..
T Consensus        56 ~l~~l~h~~iv~~~~~~-----------~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (290)
T cd05045          56 LLKQVNHPHVIKLYGAC-----------SQ----DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPD  120 (290)
T ss_pred             HHhhCCCCCEeeEEEEE-----------ec----CCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCcc
Confidence            57888999998765544           11    123667888886 5666665421100                  01


Q ss_pred             ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        434 QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       434 ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus       121 ~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dik-----p~nill~~-~~~~kl~dfg~~~~  176 (290)
T cd05045         121 ERALTMGDLISFAWQISRGMQYLAEMKLVHRDLA-----ARNVLVAE-GRKMKISDFGLSRD  176 (290)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhh-----hheEEEcC-CCcEEecccccccc
Confidence            1235677888999999999999 99999999999     99999965 58899999999873

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.47  E-value=5.1e-08  Score=97.69  Aligned_cols=145  Identities=14%  Similarity=0.177  Sum_probs=98.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++..+.       .+|+|.+.....  ..... .+|  +++..+|+|++...+.|.          . .+.  
T Consensus        33 g~v~~~~~~~~~~-------~~~iK~~~~~~~--~~~~~~~~e~~~l~~~~h~~vv~~~~~~~----------~-~~~--   90 (285)
T cd06648          33 GIVCIATDKSTGR-------QVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHPNIVEMYSSYL----------V-GDE--   90 (285)
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeccch--hHHHHHHHHHHHHHHcCCCChheEEEEEE----------c-CCe--
Confidence            5666666666665       678876542211  11111 233  577789999997665541          1 111  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        .+.+++++.. ++..++      .. ...+...+..++.|++.++.+ |.++|+|+||+     |+||++.. ++.++
T Consensus        91 --~~~v~e~~~~~~L~~~~------~~-~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~~  155 (285)
T cd06648          91 --LWVVMEFLEGGALTDIV------TH-TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIK-----SDSILLTS-DGRVK  155 (285)
T ss_pred             --EEEEEeccCCCCHHHHH------Hh-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----hhhEEEcC-CCcEE
Confidence              5678888864 443333      22 346788899999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....  ......+++.+|+||
T Consensus       156 l~d~g~~~~~~~~~~~~~~~~~~~~y~aP  184 (285)
T cd06648         156 LSDFGFCAQVSKEVPRRKSLVGTPYWMAP  184 (285)
T ss_pred             EcccccchhhccCCcccccccCCccccCH
Confidence            999998763221  112335678888887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.47  E-value=9.2e-08  Score=92.88  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=100.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++|+|++...+.|-          ..     
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~----------~~-----   71 (258)
T cd08215          14 GKVYLVRRKSDGK-------LYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFE----------EK-----   71 (258)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEe----------cC-----
Confidence            4555666655555       6777776432211111111 223  578889999987665551          11     


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -....+++++.. ++..+++-..  ......+...+..++.+++.++.+ |..++.|+|++     |.||++.. ++.++
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~-----~~nil~~~-~~~~~  143 (258)
T cd08215          72 GKLCIVMEYADGGDLSQKIKKQK--KEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIK-----PQNIFLTS-NGLVK  143 (258)
T ss_pred             CEEEEEEEecCCCcHHHHHHHhh--ccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCC-----hHHeEEcC-CCcEE
Confidence            126677888764 5544443221  112457888999999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      ++|||++.....  .....++++..|+||
T Consensus       144 l~d~~~~~~~~~~~~~~~~~~~~~~y~~p  172 (258)
T cd08215         144 LGDFGISKVLSSTVDLAKTVVGTPYYLSP  172 (258)
T ss_pred             ECCccceeecccCcceecceeeeecccCh
Confidence            999999873221  123446788888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG1095|consensus

Probab=98.47  E-value=7e-08  Score=110.01  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=94.0

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      ..+|+|.+.+......+..=++|  +|+..+||||+++-.+-         | +     .-|....+|+|+ +|+.+|++
T Consensus       723 ~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~---------l-~-----~~~~~i~leyM~gGDL~sflr  787 (1025)
T KOG1095|consen  723 IQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVC---------L-D-----SGPPLILLEYMEGGDLLSFLR  787 (1025)
T ss_pred             eEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEee---------c-C-----CCCcEEEehhcccCcHHHHHH
Confidence            34888988776443333333566  79999999999876553         0 1     124678899998 79999987


Q ss_pred             hHHh--hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        427 LQQL--YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       427 L~~i--y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      --+.  |+ .......++..+..++.+|..| +.++.+||||-     ++|+++.. +.++|++|||+||
T Consensus       788 ~~r~~~~~-~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLA-----aRNCLL~~-~r~VKIaDFGlAr  850 (1025)
T KOG1095|consen  788 ESRPAPFQ-PSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLA-----ARNCLLDE-RRVVKIADFGLAR  850 (1025)
T ss_pred             hcccccCC-CCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchh-----hhheeecc-cCcEEEcccchhH
Confidence            4321  22 3456777888899999999999 99999999999     99999975 4899999999998

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.47  E-value=4.5e-08  Score=100.15  Aligned_cols=130  Identities=14%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+.+.+..+|.       .+|+|.+.........-..+ +|  +++.++|+||+...+.|           ... .  
T Consensus        14 ~~v~~a~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~-----------~~~-~--   72 (328)
T cd08226          14 TSVYLARHTPTGT-------LVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVF-----------TTG-S--   72 (328)
T ss_pred             eeEEEEEEcCCCc-------EEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeE-----------ecC-C--
Confidence            5677777877887       88888765322111111112 22  56668999999776665           111 1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++|+|.. +...++.  +.+  ....+...++.++.|++.+|.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        73 -~~~~v~e~~~~~~l~~~l~--~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlk-----p~Nill~~-~~~~~  141 (328)
T cd08226          73 -WLWVISPFMAYGSANSLLK--TYF--PEGMSEALIGNILFGALRGLNYLHQNGYIHRNIK-----ASHILISG-DGLVS  141 (328)
T ss_pred             -ceEEEEecccCCCHHHHHH--hhc--ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEeC-CCcEE
Confidence             26788999874 5544433  111  1236788889999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCC
Q psy17422        486 LCDFGSA  492 (512)
Q Consensus       486 l~DfGla  492 (512)
                      ++|||.+
T Consensus       142 ~~~~~~~  148 (328)
T cd08226         142 LSGLSHL  148 (328)
T ss_pred             EechHHH
Confidence            9999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.47  E-value=7.4e-08  Score=97.71  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=99.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+..... ....... .+|  +++.++|+|++.....+          . .. . 
T Consensus        29 g~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------~-~~-~-   88 (308)
T cd06634          29 GAVYFARDVRNSE-------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCY----------L-RE-H-   88 (308)
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEE----------E-cC-C-
Confidence            4566666666666       778877643211 1111111 233  67888999998765544          1 11 1 


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        ..+.+++++..++..++..     .+...+...+..++.|++.++.+ |..+++|+||+     |+||++.. .+.+|
T Consensus        89 --~~~lv~e~~~~~l~~~~~~-----~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~-----p~nil~~~-~~~~k  155 (308)
T cd06634          89 --TAWLVMEYCLGSASDLLEV-----HKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK-----AGNILLSE-PGLVK  155 (308)
T ss_pred             --eeEEEEEccCCCHHHHHHH-----cCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHhEEECC-CCcEE
Confidence              2678899987665444432     22336778888999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++.....  ...+.++..|+||
T Consensus       156 l~dfg~~~~~~~--~~~~~~~~~y~aP  180 (308)
T cd06634         156 LGDFGSASIMAP--ANXFVGTPYWMAP  180 (308)
T ss_pred             ECCcccceeecC--cccccCCccccCH
Confidence            999999763221  2345677778877

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=98.47  E-value=8.8e-08  Score=93.96  Aligned_cols=115  Identities=18%  Similarity=0.114  Sum_probs=81.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+.....+           .    ..-+.+.+++++.. ++..++.-+    .....+...+..++.|++.
T Consensus        55 ~l~~l~~~~i~~~~~~~-----------~----~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~~i~~  115 (261)
T cd05148          55 ALKRLRHKHLISLFAVC-----------S----VGEPVYIITELMEKGSLLAFLRSP----EGQVLPVASLIDMACQVAE  115 (261)
T ss_pred             HHhcCCCcchhheeeeE-----------e----cCCCeEEEEeecccCCHHHHHhcC----CCCCCCHHHHHHHHHHHHH
Confidence            57888999998654433           1    11247788999874 666665421    1224678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC--ccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE--ITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~--~t~yv~tr~YraP  512 (512)
                      ++.+ |.++|+|+|||     |+|+++.. ++.+|++|||.+.......  .....++..|+||
T Consensus       116 al~~lH~~~i~h~dl~-----~~nilv~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~P  173 (261)
T cd05148         116 GMAYLEEQNSIHRDLA-----ARNILVGE-DLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAP  173 (261)
T ss_pred             HHHHHHHCCeeccccC-----cceEEEcC-CceEEEccccchhhcCCccccccCCCCceEecCH
Confidence            9999 99999999999     99999975 4889999999986332211  1122334457766

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.47  E-value=2e-07  Score=93.51  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHh----------hhhccCCChHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQL----------YRDQAGRDADV  441 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~i----------y~~ka~~d~~~  441 (512)
                      ++..++|+||+.....+           ..    .-++..+++++. .++..++.....          ...+...+...
T Consensus        60 ~l~~l~h~~i~~~~~~~-----------~~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (291)
T cd05094          60 LLTNLQHEHIVKFYGVC-----------GD----GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ  124 (291)
T ss_pred             HHhcCCCCCcceEEEEE-----------cc----CCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHH
Confidence            57888999999765544           11    123788999986 577777654321          01122367788


Q ss_pred             HHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        442 IYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       442 v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      +..++.|++.++.+ |.++|+|+|||     |+||++.. ++.+|++|||+++....    ......+++..|+||
T Consensus       125 ~~~i~~~i~~al~~lH~~~i~H~dlk-----p~Nil~~~-~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  194 (291)
T cd05094         125 MLHIASQIASGMVYLASQHFVHRDLA-----TRNCLVGA-NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  194 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeecccC-----cceEEEcc-CCcEEECCCCcccccCCCceeecCCCCCcceeecCh
Confidence            89999999999999 99999999999     99999975 48899999999873211    112334567778887

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG1167|consensus

Probab=98.46  E-value=2.1e-07  Score=95.58  Aligned_cols=117  Identities=21%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             cChHhHHHHhhhhcCCCCCchHHHHHHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHH
Q psy17422        348 ENFEEAMKAVNFALIPTTVPSSVASILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIA  426 (512)
Q Consensus       348 ~n~~eAik~v~~~~~~~~i~~~~~ell~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~  426 (512)
                      ++..+|+|.+...-.+..+..+++ +|..+ -+.||..+...|           ..+++    +..++|+++.+.  +.+
T Consensus        63 ~~~~valk~i~~ts~p~ri~~El~-~L~~~gG~~ni~~~~~~~-----------rnnd~----v~ivlp~~~H~~--f~~  124 (418)
T KOG1167|consen   63 KRRYVALKAIYRTSSPSRILNELE-MLYRLGGSDNIIKLNGCF-----------RNNDQ----VAIVLPYFEHDR--FRD  124 (418)
T ss_pred             ccceEeeeecccccCchHHHHHHH-HHHHhccchhhhcchhhh-----------ccCCe----eEEEecccCccC--HHH
Confidence            455889999987655444444332 34444 356777666655           12222    778999997553  333


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      +..      ..+...++.|++.++.++.+ |.+||+|||||     |.|.+.++.++.--+.|||+|.
T Consensus       125 l~~------~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiK-----psNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  125 LYR------SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIK-----PSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             HHh------cCCHHHHHHHHHHHHHHhhhhhccCccccCCC-----ccccccccccCCceEEechhHH
Confidence            322      25788999999999999999 99999999999     9999998777777899999974

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.46  E-value=5.4e-08  Score=94.98  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=97.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.....+.       ..|+|.+.....    ... .+|  +++.++|+|++...+.|.          . .    
T Consensus        17 ~~v~~~~~~~~~~-------~~~~k~~~~~~~----~~~~~~e~~~~~~l~~~~i~~~~~~~~----------~-~----   70 (256)
T cd06612          17 GSVYKAIHKETGQ-------VVAIKVVPVEED----LQEIIKEISILKQCDSPYIVKYYGSYF----------K-N----   70 (256)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeecHHH----HHHHHHHHHHHHhCCCCcEeeeeeeee----------c-C----
Confidence            4455555555554       667766543211    122 222  577789999997666552          1 1    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..++.+++++. .++..+++..     ....+...+..++.|++.++.+ |..+|+|+|++     |.||++.. .+.++
T Consensus        71 ~~~~l~~e~~~~~~L~~~l~~~-----~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~-----~~ni~~~~-~~~~~  139 (256)
T cd06612          71 TDLWIVMEYCGAGSVSDIMKIT-----NKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIK-----AGNILLNE-EGQAK  139 (256)
T ss_pred             CcEEEEEecCCCCcHHHHHHhC-----ccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----cceEEECC-CCcEE
Confidence            12678888887 4555555322     2346888999999999999999 99999999999     99999975 47899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||++....  ........++..|+||
T Consensus       140 l~dfg~~~~~~~~~~~~~~~~~~~~y~~P  168 (256)
T cd06612         140 LADFGVSGQLTDTMAKRNTVIGTPFWMAP  168 (256)
T ss_pred             EcccccchhcccCccccccccCCccccCH
Confidence            99999987322  1122334566777776

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0695|consensus

Probab=98.45  E-value=1.3e-07  Score=94.27  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=105.2

Q ss_pred             CcChHhHHHHhhhhcCC--CCCchHHHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-C
Q psy17422        347 EENFEEAMKAVNFALIP--TTVPSSVAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-D  420 (512)
Q Consensus       347 ~~n~~eAik~v~~~~~~--~~i~~~~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d  420 (512)
                      .+++.-|+|-+++..-+  ..|..--.|  +|.. .+||.++.+.+.|           +.++.    |.-++++... |
T Consensus       273 ~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscf-----------qtesr----lffvieyv~ggd  337 (593)
T KOG0695|consen  273 KTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCF-----------QTESR----LFFVIEYVNGGD  337 (593)
T ss_pred             ccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhh-----------cccce----EEEEEEEecCcc
Confidence            34558899999876533  344333222  5655 4688999888888           34443    7888998874 4


Q ss_pred             hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC--CCC
Q psy17422        421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW--SHE  497 (512)
Q Consensus       421 ~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~--~~~  497 (512)
                      +      --..+.+....++..+.|-..+.-+|++ |.++|+-||+|     ..|+++.. .|.+|+.|.|++..  .++
T Consensus       338 l------mfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlk-----ldnvllda-eghikltdygmcke~l~~g  405 (593)
T KOG0695|consen  338 L------MFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLK-----LDNVLLDA-EGHIKLTDYGMCKEGLGPG  405 (593)
T ss_pred             e------eeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeecc-----ccceEEcc-CCceeecccchhhcCCCCC
Confidence            3      1112334458888999999999999999 99999999999     99999975 59999999999874  356


Q ss_pred             CCccCeeeeeeeccC
Q psy17422        498 NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 ~~~t~yv~tr~YraP  512 (512)
                      ..-++++||+.|.||
T Consensus       406 d~tstfcgtpnyiap  420 (593)
T KOG0695|consen  406 DTTSTFCGTPNYIAP  420 (593)
T ss_pred             cccccccCCCcccch
Confidence            677899999999998

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.45  E-value=8.3e-08  Score=97.35  Aligned_cols=131  Identities=18%  Similarity=0.100  Sum_probs=89.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HH--HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VA--SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~--ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... ..  ++++.++|+||++....+           ...   
T Consensus        15 g~vy~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----------~~~---   73 (316)
T cd05574          15 GRVFLVRLKGTGK-------LFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASF-----------QTE---   73 (316)
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeee-----------ecC---
Confidence            5677777766666       77888765421110 01111 22  267888999998765444           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       ...+.+++++.. ++..++.-+    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ++.+
T Consensus        74 -~~~~lv~e~~~~~~L~~~~~~~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~  142 (316)
T cd05574          74 -TYLCLVMDYCPGGELFRLLQRQ----PGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLK-----PENILLHE-SGHI  142 (316)
T ss_pred             -CEEEEEEEecCCCCHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----hHHeEEcC-CCCE
Confidence             126788888764 554443311    11346788888999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCC
Q psy17422        485 KLCDFGSAS  493 (512)
Q Consensus       485 Kl~DfGlar  493 (512)
                      ++.|||++.
T Consensus       143 ~l~dfg~~~  151 (316)
T cd05574         143 MLSDFDLSK  151 (316)
T ss_pred             EEeecchhh
Confidence            999999865

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=98.45  E-value=1.8e-07  Score=92.50  Aligned_cols=148  Identities=19%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCC-------CchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTT-------VPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDF  399 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~-------i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F  399 (512)
                      +.|+++.+..+|.       .+|+|.+..... ...       ....+ +|  +++.++|+|++.....+          
T Consensus        15 ~~vy~~~~~~~~~-------~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~----------   77 (272)
T cd06629          15 GRVYLALNVTTGE-------MMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFE----------   77 (272)
T ss_pred             eEEEEEeecCCCc-------eeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEe----------
Confidence            4566666666676       778877642111 000       00111 22  57888999998655433          


Q ss_pred             hhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        400 VDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       400 ~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                       ...    --++.+++++. .++..+++      .....+...++.++.|++.++.+ |..+++|+|++     |+||++
T Consensus        78 -~~~----~~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----~~nil~  141 (272)
T cd06629          78 -TTE----EYLSIFLEYVPGGSIGSCLR------TYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLK-----ADNLLV  141 (272)
T ss_pred             -ccC----CceEEEEecCCCCcHHHHHh------hccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCC-----hhhEEE
Confidence             111    12667788875 45555543      22346778888999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      .. ++.++++|||+++....    .......++..|+||
T Consensus       142 ~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~P  179 (272)
T cd06629         142 DA-DGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAP  179 (272)
T ss_pred             cC-CCeEEEeeccccccccccccccccccccCCccccCH
Confidence            74 58999999999863221    112344566777776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.45  E-value=1.1e-07  Score=93.29  Aligned_cols=148  Identities=20%  Similarity=0.133  Sum_probs=95.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++..+.       .+|+|.+............ ..|  +++.++|+||++....+          ..     .
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~----------~~-----~   71 (264)
T cd06626          14 GKVYTAVNLDTGE-------LMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVE----------VH-----R   71 (264)
T ss_pred             cEEEEEEECCCCc-------EEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeE----------ec-----C
Confidence            3455555555555       6777776432211001111 222  67888999988654433          11     1


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+++++. .++..++      +.....+...++.++.+++.++.+ |..+|.|+|++     |.||++.. ++.+|
T Consensus        72 ~~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~-----~~nil~~~-~~~~k  139 (264)
T cd06626          72 EKVYIFMEYCSGGTLEELL------EHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIK-----PANIFLDH-NGVIK  139 (264)
T ss_pred             CEEEEEEecCCCCcHHHHH------hhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCEE
Confidence            13678888887 4444443      233346777888999999999999 99999999999     99999975 58899


Q ss_pred             EecCCCCCCCCC--CC----ccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE--NE----ITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~--~~----~t~yv~tr~YraP  512 (512)
                      ++|||++.....  ..    .....++..|+||
T Consensus       140 l~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~P  172 (264)
T cd06626         140 LGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAP  172 (264)
T ss_pred             EcccccccccCCCCCcccccccCCcCCcCccCh
Confidence            999999763211  10    1134556677776

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.44  E-value=7.8e-08  Score=96.93  Aligned_cols=146  Identities=14%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++..+.+|.       .+|+|.+..... .....-.+|  +++.++|+|+++..+.|.          ..  .   
T Consensus        34 g~v~~~~~~~~~~-------~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~~--~---   90 (292)
T cd06657          34 GIVCIATVKSSGK-------LVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHENVVEMYNSYL----------VG--D---   90 (292)
T ss_pred             eEEEEEEEcCCCe-------EEEEEEecccch-hHHHHHHHHHHHHHhcCCcchhheeeEEE----------eC--C---
Confidence            3455555666666       788887642111 111111233  578889999987665551          11  1   


Q ss_pred             ceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++... +..++.       ....+...+..++.|++.++.+ |..+|+|+|++     |+||++.. ++.+++
T Consensus        91 ~~~lv~e~~~~~~L~~~~~-------~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~-----p~Nilv~~-~~~~~l  157 (292)
T cd06657          91 ELWVVMEFLEGGALTDIVT-------HTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIK-----SDSILLTH-DGRVKL  157 (292)
T ss_pred             EEEEEEecCCCCcHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCCEEE
Confidence            267888888754 333321       2236778889999999999999 99999999999     99999975 478999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||++....  ......++++..|+||
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~y~~p  185 (292)
T cd06657         158 SDFGFCAQVSKEVPRRKSLVGTPYWMAP  185 (292)
T ss_pred             cccccceecccccccccccccCccccCH
Confidence            9999876321  1123346778888887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.43  E-value=8.3e-08  Score=96.51  Aligned_cols=101  Identities=15%  Similarity=0.137  Sum_probs=75.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh-----hhccCCChHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY-----RDQAGRDADVIYRRA  446 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy-----~~ka~~d~~~v~~~~  446 (512)
                      +++.++|+||+...+.|          ..     .-+++.+++++. .++..++.-...-     ......+...+..++
T Consensus        72 ~l~~l~~~~i~~~~~~~----------~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (296)
T cd05095          72 IMSRLKDPNIIRLLAVC----------IT-----SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMA  136 (296)
T ss_pred             HHHhCCCCCcceEEEEE----------ec-----CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHH
Confidence            67888999998665544          11     123788899987 5777776532211     111234566788999


Q ss_pred             HHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        447 QQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       447 ~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .|++.++.+ |..+|+|+|||     |+||++.. ++.++++|||+++.
T Consensus       137 ~~i~~al~~lH~~~i~H~dlk-----p~Nili~~-~~~~~l~dfg~~~~  179 (296)
T cd05095         137 TQIASGMKYLSSLNFVHRDLA-----TRNCLVGK-NYTIKIADFGMSRN  179 (296)
T ss_pred             HHHHHHHHHHHHCCeecccCC-----hheEEEcC-CCCEEeccCccccc
Confidence            999999999 99999999999     99999975 57899999999873

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.43  E-value=7.5e-08  Score=94.41  Aligned_cols=151  Identities=18%  Similarity=0.184  Sum_probs=98.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++....++.       ..|+|.+...........-.+|  +++.++|+|++.....+          ...  .   
T Consensus        15 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~~~--~---   72 (267)
T cd06610          15 AVVYAAICLPNNE-------KVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSF----------VVG--D---   72 (267)
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEE----------eeC--C---
Confidence            3455555555555       5666665432211111111233  57788999998655443          111  1   


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++. .++..+++....   +...+...+..++.|++.++.+ |..+|+|+|++     |+||.+.. ++.+++
T Consensus        73 ~~~iv~e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~-----p~ni~~~~-~~~~~l  143 (267)
T cd06610          73 ELWLVMPYLSGGSLLDIMKSSYP---RGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIK-----AGNILLGE-DGSVKI  143 (267)
T ss_pred             EEEEEEeccCCCcHHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHhEEEcC-CCCEEE
Confidence            2678888886 455555542211   2346888899999999999999 99999999999     99999975 478999


Q ss_pred             ecCCCCCCC--CC----CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~----~~~t~yv~tr~YraP  512 (512)
                      +|||++...  ..    .....++++..|+||
T Consensus       144 ~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~P  175 (267)
T cd06610         144 ADFGVSASLADGGDRTRKVRKTFVGTPCWMAP  175 (267)
T ss_pred             cccchHHHhccCccccccccccccCChhhcCh
Confidence            999997521  11    112345788888887

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=98.42  E-value=8.8e-08  Score=95.72  Aligned_cols=100  Identities=13%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh----------------hhcc
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY----------------RDQA  435 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy----------------~~ka  435 (512)
                      +++.+.|+|++.....+.           ..    .+++.+++++. .++..++......                ....
T Consensus        61 ~l~~l~h~~iv~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T cd05050          61 LMAEFDHPNIVKLLGVCA-----------VG----KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPL  125 (288)
T ss_pred             HHHhcCCCchheEEEEEc-----------CC----CccEEEEecCCCCCHHHHHHHcCcccccccccccccccccccccc
Confidence            578889999987655441           11    13678888887 5777777532211                1122


Q ss_pred             CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        436 GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       436 ~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ..+...+..++.|++.++.+ |.++++|+|||     |+|+++.. ++.+|++|||+++
T Consensus       126 ~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~-----p~nil~~~-~~~~~l~dfg~~~  178 (288)
T cd05050         126 PLSCTEQLCIAKQVAAGMAYLSERKFVHRDLA-----TRNCLVGE-NMVVKIADFGLSR  178 (288)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCeeccccc-----HhheEecC-CCceEECccccce
Confidence            35677788999999999999 99999999999     99999864 5889999999986

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG4278|consensus

Probab=98.42  E-value=2.2e-07  Score=99.12  Aligned_cols=125  Identities=16%  Similarity=0.138  Sum_probs=88.7

Q ss_pred             HhHHHHhhhhcCCCCCchH--HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS--VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~--~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      .+|+|.++.    ..++-+  ++|  +|++++|||+|++..+.               ..-.|.+++-++|. .++-.|+
T Consensus       294 TvAVKtLKE----DtMeveEFLkEAAvMKeikHpNLVqLLGVC---------------T~EpPFYIiTEfM~yGNLLdYL  354 (1157)
T KOG4278|consen  294 TVAVKTLKE----DTMEVEEFLKEAAVMKEIKHPNLVQLLGVC---------------THEPPFYIITEFMCYGNLLDYL  354 (1157)
T ss_pred             eeehhhhhh----cchhHHHHHHHHHHHHhhcCccHHHHhhhh---------------ccCCCeEEEEecccCccHHHHH
Confidence            678888754    233322  444  89999999999876655               23357899999997 6776666


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCee
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYL  504 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv  504 (512)
                      +--+    +.....-.+.....||-.++.| ..++.+|||+.     ++|.+|-.. .++|++|||++|...+..||...
T Consensus       355 Recn----r~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLA-----ARNCLVgEn-hiVKvADFGLsRlMtgDTYTAHA  424 (1157)
T KOG4278|consen  355 RECN----RSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLA-----ARNCLVGEN-HIVKVADFGLSRLMTGDTYTAHA  424 (1157)
T ss_pred             HHhc----hhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hhhcccccc-ceEEeeccchhhhhcCCceeccc
Confidence            4221    1123333333444689999999 88999999999     999999754 89999999999976665555443

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.41  E-value=1.4e-07  Score=92.63  Aligned_cols=94  Identities=12%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+|+++....+           ..  .   ..+.+++++. .++..++.      .....+...+..++.|++.
T Consensus        49 ~l~~l~h~~iv~~~~~~-----------~~--~---~~~~v~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~  106 (257)
T cd05060          49 VMAQLDHPCIVRLIGVC-----------KG--E---PLMLVMELAPLGPLLKYLK------KRREIPVSDLKELAHQVAM  106 (257)
T ss_pred             HHHhcCCCCeeeEEEEE-----------cC--C---ceEEEEEeCCCCcHHHHHH------hCCCCCHHHHHHHHHHHHH
Confidence            67888999998654432           11  1   2567888876 45555553      2224678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..+|+|+|||     |+|+++.. ++.+|++|||+++.
T Consensus       107 ~l~~lh~~~i~H~di~-----p~nili~~-~~~~kl~df~~~~~  144 (257)
T cd05060         107 GMAYLESKHFVHRDLA-----ARNVLLVN-RHQAKISDFGMSRA  144 (257)
T ss_pred             HHHHHhhcCeeccCcc-----cceEEEcC-CCcEEeccccccce
Confidence            9999 99999999999     99999964 58899999999873

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.41  E-value=1.8e-07  Score=90.35  Aligned_cols=148  Identities=18%  Similarity=0.206  Sum_probs=98.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+...|.       .+++|....... .....-.+|  +++.++|+|+....+.|          .. .    .
T Consensus        14 ~~v~~~~~~~~~~-------~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~~-~----~   70 (253)
T cd05122          14 GEVYKARHKRTGK-------EVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSY----------LK-K----D   70 (253)
T ss_pred             eEEEEEEECCCCc-------EEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEE----------ec-C----C
Confidence            4556666665555       667776644321 011111233  57788899998665544          11 1    1


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+.+++++. .++..++.-.     +...+...+..++.|++.++.+ |..++.|+|++     |.||++.. ++.+++
T Consensus        71 ~~~l~~e~~~~~~L~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~-----p~ni~i~~-~~~~~l  139 (253)
T cd05122          71 ELWIVMEFCSGGSLKDLLKST-----NQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIK-----AANILLTS-DGEVKL  139 (253)
T ss_pred             eEEEEEecCCCCcHHHHHhhc-----CCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCC-----HHHEEEcc-CCeEEE
Confidence            2667788887 4444443221     1347888899999999999999 99999999999     99999975 588999


Q ss_pred             ecCCCCCCCCCCC-ccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENE-ITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~-~t~yv~tr~YraP  512 (512)
                      +|||.+....... .....++..|+||
T Consensus       140 ~d~~~~~~~~~~~~~~~~~~~~~~~~P  166 (253)
T cd05122         140 IDFGLSAQLSDTKARNTMVGTPYWMAP  166 (253)
T ss_pred             eeccccccccccccccceecCCcccCH
Confidence            9999987432211 3345677777776

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.41  E-value=3.6e-07  Score=90.34  Aligned_cols=113  Identities=12%  Similarity=0.016  Sum_probs=79.9

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCCh-HHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADT-TRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~-~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++||||+.....++          . +.    ....+++++...+ ..++.     +.....+...+..++.|++.
T Consensus        57 ~l~~l~hp~iv~~~~~~~----------~-~~----~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~~i~~qi~~  116 (262)
T cd05077          57 MMRQVSHKHIVLLYGVCV----------R-DV----ENIMVEEFVEFGPLDLFMH-----RKSDVLTTPWKFKVAKQLAS  116 (262)
T ss_pred             HHHhCCCCCEeeEEEEEe----------c-CC----CCEEEEecccCCCHHHHHH-----hcCCCCCHHHHHHHHHHHHH
Confidence            678889999997665541          1 11    1467888887543 33322     12234678888999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCC------CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESK------LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~------~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++.| |..+|+|+|||     |.||++....      ..+|++|||++.....  ....+++..|+||
T Consensus       117 ~l~~lH~~~ivH~dlk-----p~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~--~~~~~~~~~y~aP  177 (262)
T cd05077         117 ALSYLEDKDLVHGNVC-----TKNILLAREGIDGECGPFIKLSDPGIPITVLS--RQECVERIPWIAP  177 (262)
T ss_pred             HHHHhhhCCeECCCCC-----cccEEEecCCccCCCCceeEeCCCCCCccccC--cccccccccccCh
Confidence            9999 99999999999     9999996431      1389999999863211  1234567778887

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.40  E-value=1.1e-07  Score=109.37  Aligned_cols=93  Identities=14%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC---------
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE---------  479 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~---------  479 (512)
                      +...++++..++..+++-     .....+...++.+++|++.|+.| |.++|+|||||     |+||++..         
T Consensus        55 ~~~~~e~~~~~L~~~l~~-----~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlK-----P~NiLl~~~~~~k~~d~  124 (793)
T PLN00181         55 IVRALECEDVSLRQWLDN-----PDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVR-----PSCFVMSSFNHVSFIES  124 (793)
T ss_pred             hhhhhccCCccHHHHHhc-----ccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCC-----chhEEEcccCcEEEeec
Confidence            445577777777766642     12347888999999999999999 99999999999     99999942         


Q ss_pred             ---------CCCeEEEecCCCCCCCCC------------------CCccCeeeeeeeccC
Q psy17422        480 ---------SKLVLKLCDFGSASWSHE------------------NEITPYLVSRFYRAP  512 (512)
Q Consensus       480 ---------~~~~~Kl~DfGlar~~~~------------------~~~t~yv~tr~YraP  512 (512)
                               ..+.+|++|||+++....                  ...+.+++|+||+||
T Consensus       125 ~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  184 (793)
T PLN00181        125 ASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSP  184 (793)
T ss_pred             cccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceECh
Confidence                     234577888888763110                  011236899999999

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.40  E-value=1.6e-07  Score=92.38  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+|++.....+           ..  .   ..+.+++++.. ++.+++.-.    .....+...+..++.|++.
T Consensus        54 ~l~~l~h~~i~~~~~~~-----------~~--~---~~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~  113 (260)
T cd05069          54 IMKKLRHDKLVPLYAVV-----------SE--E---PIYIVTEFMGKGSLLDFLKEG----DGKYLKLPQLVDMAAQIAD  113 (260)
T ss_pred             HHHhCCCCCeeeEEEEE-----------cC--C---CcEEEEEcCCCCCHHHHHhhC----CCCCCCHHHHHHHHHHHHH
Confidence            68888999998654322           11  1   25688898874 665555321    1123577788899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+|+++.. ++.++++|||+++.....   ......++..|+||
T Consensus       114 al~~lH~~~i~H~dl~-----~~Nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  172 (260)
T cd05069         114 GMAYIERMNYIHRDLR-----AANILVGD-NLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP  172 (260)
T ss_pred             HHHHHHhCCEeecccC-----cceEEEcC-CCeEEECCCccceEccCCcccccCCCccchhhCCH
Confidence            9999 99999999999     99999975 588999999998732211   11223345567776

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.39  E-value=2.7e-07  Score=91.03  Aligned_cols=115  Identities=16%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             hhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHh
Q psy17422        375 NDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQL  453 (512)
Q Consensus       375 ~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l  453 (512)
                      +..+|+|++.....|          .. .+    ..+.+++++.. ++..++.  .........+...+..++.|++.++
T Consensus        64 ~~~~h~~i~~~~~~~----------~~-~~----~~~lv~e~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~l  126 (269)
T cd08528          64 EQLRHPNIVRYYKTF----------LE-ND----RLYIVMDLIEGAPLGEHFN--SLKEKKQRFTEERIWNIFVQMVLAL  126 (269)
T ss_pred             hcCCCCCeeeEEeeE----------cc-CC----eEEEEEecCCCCcHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHH
Confidence            347899998765544          11 11    26788898874 5555543  2222334578889999999999999


Q ss_pred             CC-CC-CCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        454 GQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       454 ~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      .+ |. .+|+|+|++     |+||++.. ++.+|+.|||++.... ....+...++..|+||
T Consensus       127 ~~lh~~~~i~H~dl~-----~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~P  182 (269)
T cd08528         127 RYLHKEKRIVHRDLT-----PNNIMLGE-DDKVTITDFGLAKQKQPESKLTSVVGTILYSCP  182 (269)
T ss_pred             HHhccCCceeecCCC-----HHHEEECC-CCcEEEecccceeecccccccccccCcccCcCh
Confidence            99 95 789999999     99999975 5889999999987322 2234456677778777

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.39  E-value=4e-07  Score=91.17  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHh---h----hhccCCChHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQL---Y----RDQAGRDADVIYR  444 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~i---y----~~ka~~d~~~v~~  444 (512)
                      ++..++|+||+.....+.           ..    -.++.+++++. .++..++.-+..   +    ......+...+..
T Consensus        60 ~l~~l~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (288)
T cd05093          60 LLTNLQHEHIVKFYGVCV-----------EG----DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLH  124 (288)
T ss_pred             HHHhCCCCCcceEEEEEe-----------cC----CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHH
Confidence            678889999997665541           11    13678899987 566666643221   0    0112367888999


Q ss_pred             HHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        445 RAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       445 ~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      ++.|++.++.+ |..+|+|+|+|     |+||++.. ++.+|++|||+++....    .......++..|+||
T Consensus       125 ~~~ql~~aL~~lH~~~i~H~dlk-----p~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  191 (288)
T cd05093         125 IAQQIAAGMVYLASQHFVHRDLA-----TRNCLVGE-NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  191 (288)
T ss_pred             HHHHHHHHHHHHHhCCeeecccC-----cceEEEcc-CCcEEeccCCccccccCCceeecCCCCCccccccCH
Confidence            99999999999 99999999999     99999965 58899999999873221    112233445678887

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.38  E-value=1.8e-07  Score=90.86  Aligned_cols=148  Identities=20%  Similarity=0.171  Sum_probs=97.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--CCchHHH--HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--TVPSSVA--SILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--~i~~~~~--ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+...|.       ..|+|.+.......  .+..-..  ++++.++|+|+......|           +...  
T Consensus         7 ~~v~~~~~~~~~~-------~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~~--   66 (250)
T cd05123           7 GKVLLVRKKDTGK-------LYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAF-----------QTEE--   66 (250)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHe-----------ecCC--
Confidence            3455556555555       66777654432111  1111122  367888999988543333           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.+++++. .++..++.      .....+...+..++.|++.++.+ |..++.|+||+     |.||++.. ++.+
T Consensus        67 --~~~~v~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~-----p~ni~~~~-~~~~  132 (250)
T cd05123          67 --KLYLVLEYAPGGELFSHLS------KEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLK-----PENILLDA-DGHI  132 (250)
T ss_pred             --eeEEEEecCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----cceEEEcC-CCcE
Confidence              2678888884 56555553      22246788899999999999999 99999999999     99999975 4789


Q ss_pred             EEecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +++|||++.....  .....+.++..|+||
T Consensus       133 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~P  162 (250)
T cd05123         133 KLTDFGLAKELSSEGSRTNTFCGTPEYLAP  162 (250)
T ss_pred             EEeecCcceecccCCCcccCCcCCccccCh
Confidence            9999999873322  123455667777776

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.37  E-value=1.9e-07  Score=92.19  Aligned_cols=129  Identities=20%  Similarity=0.203  Sum_probs=90.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HH--HHHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VA--SILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~--ell~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+..... ....... .+  ++++.++ |+||++....|+          ..   
T Consensus        15 ~~vy~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~----------~~---   74 (280)
T cd05581          15 STVVLAKEKETNK-------EYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQ----------DE---   74 (280)
T ss_pred             eEEEEEEEcCCCC-------EEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhc----------CC---
Confidence            5677777777777       777776543211 1111112 22  2677777 999986554442          11   


Q ss_pred             CCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                        -.++.+++++. .++..++.      .....+...+..++.|++.++.+ |..++.|+|++     |+||++.. ++.
T Consensus        75 --~~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~-----~~ni~i~~-~~~  140 (280)
T cd05581          75 --ENLYFVLEYAPNGELLQYIR------KYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLK-----PENILLDK-DMH  140 (280)
T ss_pred             --ceEEEEEcCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----HHHeEECC-CCC
Confidence              12678888884 55544443      33357888999999999999999 99999999999     99999965 478


Q ss_pred             EEEecCCCCC
Q psy17422        484 LKLCDFGSAS  493 (512)
Q Consensus       484 ~Kl~DfGlar  493 (512)
                      ++++|||++.
T Consensus       141 ~~l~df~~~~  150 (280)
T cd05581         141 IKITDFGTAK  150 (280)
T ss_pred             EEecCCcccc
Confidence            9999999976

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.36  E-value=1.6e-07  Score=92.21  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=88.1

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.....   -+.. .+|  +++.++|+|++.....+           .. .    ..+.+++++. .++..++.
T Consensus        32 ~~~~k~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~-----------~~-~----~~~lv~e~~~~~~L~~~~~   92 (260)
T cd05070          32 KVAVKTLKPGTM---SPESFLEEAQIMKKLRHDKLVQLYAVV-----------SE-E----PIYIVTEYMSKGSLLDFLK   92 (260)
T ss_pred             eeEEEEecCCCC---CHHHHHHHHHHHHhcCCCceEEEEeEE-----------CC-C----CcEEEEEecCCCcHHHHHH
Confidence            567776643211   1122 233  68889999998654322           11 1    2578899887 45555543


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCc---cC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEI---TP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~---t~  502 (512)
                      -.    .....+...+..++.+++.++.+ |.++|+|+|||     |.||++.. ++.++++|||+++.......   ..
T Consensus        93 ~~----~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~-----p~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05070          93 DG----EGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLR-----SANILVGD-GLVCKIADFGLARLIEDNEYTARQG  162 (260)
T ss_pred             hc----CCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc-----cceEEEeC-CceEEeCCceeeeeccCcccccccC
Confidence            21    11236778899999999999999 99999999999     99999975 57899999999873221111   12


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..++..|+||
T Consensus       163 ~~~~~~y~aP  172 (260)
T cd05070         163 AKFPIKWTAP  172 (260)
T ss_pred             CCCCccccCh
Confidence            2344568887

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.36  E-value=2.2e-07  Score=90.99  Aligned_cols=113  Identities=18%  Similarity=0.183  Sum_probs=79.9

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++|+|++...+.+          ..   .+   ++.+++++. .++.+++...    .....+...+..++.|++.
T Consensus        52 ~l~~~~~~~i~~~~~~~----------~~---~~---~~~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~qi~~  111 (254)
T cd05083          52 VMTKLHHKNLVRLLGVI----------LH---NG---LYIVMELMSKGNLVNFLRTR----GRALVSVIQLLQFSLDVAE  111 (254)
T ss_pred             HHHhCCCCCcCeEEEEE----------cC---CC---cEEEEECCCCCCHHHHHHhc----CcCCCCHHHHHHHHHHHHH
Confidence            67888999998755443          11   11   568888887 4666665422    1223678888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++.+ |.++++|+|+|     |+|+++.. .+.+|++|||+++..... ......+..|+||
T Consensus       112 al~~lH~~~~~H~dl~-----p~nili~~-~~~~kl~Dfg~~~~~~~~-~~~~~~~~~y~~p  166 (254)
T cd05083         112 GMEYLESKKLVHRDLA-----ARNILVSE-DGVAKVSDFGLARVGSMG-VDNSKLPVKWTAP  166 (254)
T ss_pred             HHHHHHhCCeeccccC-----cceEEEcC-CCcEEECCCccceecccc-CCCCCCCceecCH
Confidence            9999 99999999999     99999965 488999999998632211 1122233456665

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>KOG0614|consensus

Probab=98.35  E-value=1.2e-07  Score=99.21  Aligned_cols=137  Identities=17%  Similarity=0.144  Sum_probs=92.7

Q ss_pred             ChHhHHHHhhhhcC-CCCCchH-H--HHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHH
Q psy17422        349 NFEEAMKAVNFALI-PTTVPSS-V--ASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTR  423 (512)
Q Consensus       349 n~~eAik~v~~~~~-~~~i~~~-~--~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~  423 (512)
                      +-.-|+|.+++.-- .++=... .  +.||...+.+.||          +-.+-|.+.. .    ++.-|+-|- .+.  
T Consensus       445 ~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIv----------rLYrTfrd~k-y----vYmLmEaClGGEl--  507 (732)
T KOG0614|consen  445 KATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIV----------RLYRTFRDSK-Y----VYMLMEACLGGEL--  507 (732)
T ss_pred             chHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHH----------HHHHHhccch-h----hhhhHHhhcCchh--
Confidence            33578888876421 1111111 1  2366555554444          3444455431 1    556565543 333  


Q ss_pred             HHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC-CCCcc
Q psy17422        424 YIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH-ENEIT  501 (512)
Q Consensus       424 yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~-~~~~t  501 (512)
                          =.+.+++..+|....+.|+...++++.| |..+|+-||+|     |+|+++.+ +|-+|+-|||+|.... +..--
T Consensus       508 ----WTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLK-----PENllLd~-~Gy~KLVDFGFAKki~~g~KTw  577 (732)
T KOG0614|consen  508 ----WTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLK-----PENLLLDN-RGYLKLVDFGFAKKIGSGRKTW  577 (732)
T ss_pred             ----hhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCC-----hhheeecc-CCceEEeehhhHHHhccCCcee
Confidence                3444566678888999999999999999 99999999999     99999985 5999999999998432 22333


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ++|||+-|.||
T Consensus       578 TFcGTpEYVAP  588 (732)
T KOG0614|consen  578 TFCGTPEYVAP  588 (732)
T ss_pred             eecCCcccccc
Confidence            58999999998

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.35  E-value=2e-07  Score=92.76  Aligned_cols=95  Identities=11%  Similarity=0.096  Sum_probs=73.6

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..++|+|++.....+.           .     ...+.+++++. .++..++.-     .....+...+..++.|++.
T Consensus        62 ~l~~l~h~~i~~~~~~~~-----------~-----~~~~~v~e~~~~g~L~~~l~~-----~~~~~~~~~~~~~~~qi~~  120 (279)
T cd05057          62 VMASVDHPHVVRLLGICL-----------S-----SQVQLITQLMPLGCLLDYVRN-----HKDNIGSQYLLNWCVQIAK  120 (279)
T ss_pred             HHHhCCCCCcceEEEEEe-----------c-----CceEEEEecCCCCcHHHHHHh-----ccCCCCHHHHHHHHHHHHH
Confidence            678889999997655441           1     12667888886 455555432     2234678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |.++|+|+|||     |+|+++.. .+.+|++|||+++.
T Consensus       121 ~l~~LH~~~i~H~di~-----p~nil~~~-~~~~kL~dfg~~~~  158 (279)
T cd05057         121 GMSYLEEKRLVHRDLA-----ARNVLVKT-PQHVKITDFGLAKL  158 (279)
T ss_pred             HHHHHHhCCEEecccC-----cceEEEcC-CCeEEECCCccccc
Confidence            9999 99999999999     99999964 58899999999873

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=98.34  E-value=1.7e-07  Score=91.98  Aligned_cols=97  Identities=19%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+|++.....+           ..    ..+++.+++++.. ++..++.-.    .....+...+..++.+++.
T Consensus        54 ~l~~l~h~~i~~~~~~~-----------~~----~~~~~~v~e~~~~~~L~~~i~~~----~~~~~~~~~~~~~~~~i~~  114 (261)
T cd05034          54 IMKKLRHDKLVQLYAVC-----------SE----EEPIYIVTEYMSKGSLLDFLKSG----EGKKLRLPQLVDMAAQIAE  114 (261)
T ss_pred             HHhhCCCCCEeeeeeee-----------ec----CCceEEEEeccCCCCHHHHHhcc----ccCCCCHHHHHHHHHHHHH
Confidence            67888999998765544           11    1237888998874 555554311    1124677889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |.++|+|+||+     |+||++.. .+.+|++|||+++.
T Consensus       115 al~~lh~~~i~h~di~-----p~nili~~-~~~~~l~d~g~~~~  152 (261)
T cd05034         115 GMAYLESRNYIHRDLA-----ARNILVGE-NLVCKIADFGLARL  152 (261)
T ss_pred             HHHHHHhCCcccCCcc-----hheEEEcC-CCCEEECcccccee
Confidence            9999 99999999999     99999975 48899999999863

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.34  E-value=1.8e-07  Score=91.55  Aligned_cols=149  Identities=19%  Similarity=0.227  Sum_probs=96.4

Q ss_pred             chhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        332 SVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       332 ~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      .++.+.++..|.       .+|+|.+...........+ .+|  +++.++|+||++..+.|          . ..+    
T Consensus        15 ~~~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~----------~-~~~----   72 (256)
T cd08218          15 KAILVKSKEDGK-------QYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESF----------E-ENG----   72 (256)
T ss_pred             EEEEEEEcCCCC-------EEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeee----------c-CCC----
Confidence            445555555555       6777776432111111112 233  68889999998765554          1 111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.+.+++++.. ++.+++...    .....+...+..++.|++.++.+ |..+++|+|++     |+|+++.. ++.+++
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~-----~~nil~~~-~~~~~l  142 (256)
T cd08218          73 NLYIVMDYCEGGDLYKKINAQ----RGVLFPEDQILDWFVQICLALKHVHDRKILHRDIK-----SQNIFLTK-DGTIKL  142 (256)
T ss_pred             eEEEEEecCCCCcHHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEEcC-CCCEEE
Confidence            26788888864 554444321    11235677888999999999999 99999999999     99999964 578999


Q ss_pred             ecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      +|||++.....  ......+++..|+||
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p  170 (256)
T cd08218         143 GDFGIARVLNSTVELARTCIGTPYYLSP  170 (256)
T ss_pred             eeccceeecCcchhhhhhccCCccccCH
Confidence            99999863221  112234566667776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG0196|consensus

Probab=98.34  E-value=2e-07  Score=101.79  Aligned_cols=134  Identities=14%  Similarity=0.107  Sum_probs=97.9

Q ss_pred             chhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        332 SVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       332 ~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      .|++.+=+..|.    ....||||.++.......--.=+.|  ||-+..||||+++..+.               ....|
T Consensus       644 EVc~GrLk~pgk----re~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVV---------------Tks~P  704 (996)
T KOG0196|consen  644 EVCSGRLKLPGK----REITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVV---------------TKSKP  704 (996)
T ss_pred             ceecccccCCCC----cceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEE---------------ecCce
Confidence            344444444443    2336788888754321111111344  88889999999887766               23458


Q ss_pred             eeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        410 LRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       410 l~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      +..+.++|+ ..+..|++..+     .++..-++...++.+..|..| ...+.+|||+.     ++||+++. +-..|++
T Consensus       705 vMIiTEyMENGsLDsFLR~~D-----GqftviQLVgMLrGIAsGMkYLsdm~YVHRDLA-----ARNILVNs-nLvCKVs  773 (996)
T KOG0196|consen  705 VMIITEYMENGSLDSFLRQND-----GQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLA-----ARNILVNS-NLVCKVS  773 (996)
T ss_pred             eEEEhhhhhCCcHHHHHhhcC-----CceEeehHHHHHHHHHHHhHHHhhcCchhhhhh-----hhheeecc-ceEEEec
Confidence            999999998 78888887554     346667777888999999999 88999999999     99999975 4788999


Q ss_pred             cCCCCCCC
Q psy17422        488 DFGSASWS  495 (512)
Q Consensus       488 DfGlar~~  495 (512)
                      |||++|..
T Consensus       774 DFGLSRvl  781 (996)
T KOG0196|consen  774 DFGLSRVL  781 (996)
T ss_pred             cccceeec
Confidence            99999944

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.34  E-value=3.2e-07  Score=90.27  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+|++.....+.           .     ...+.+++++. .++..++.-+    .....+...+..++.|++.
T Consensus        54 ~l~~l~~~~i~~~~~~~~-----------~-----~~~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~  113 (260)
T cd05073          54 VMKTLQHDKLVKLHAVVT-----------K-----EPIYIITEFMAKGSLLDFLKSD----EGSKQPLPKLIDFSAQIAE  113 (260)
T ss_pred             HHHhcCCCCcceEEEEEc-----------C-----CCeEEEEEeCCCCcHHHHHHhC----CccccCHHHHHHHHHHHHH
Confidence            688899999997655441           1     12567888886 4555554321    1234677788899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC---ccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE---ITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~---~t~yv~tr~YraP  512 (512)
                      ++.+ |..+++|+|||     |+|+++.. .+.+|++|||+++......   .....++..|+||
T Consensus       114 aL~~lH~~~i~H~dl~-----p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~P  172 (260)
T cd05073         114 GMAFIEQRNYIHRDLR-----AANILVSA-SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP  172 (260)
T ss_pred             HHHHHHhCCccccccC-----cceEEEcC-CCcEEECCCcceeeccCCCcccccCCcccccccCH
Confidence            9999 99999999999     99999964 5899999999986332111   1122344557776

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.34  E-value=1.5e-07  Score=93.50  Aligned_cols=120  Identities=12%  Similarity=0.047  Sum_probs=80.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhh--hccCCChHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYR--DQAGRDADVIYRRAQQL  449 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~--~ka~~d~~~v~~~~~ql  449 (512)
                      ++..++|+|+++.....          ...    ..+...+++++. .++..|+.......  .........+..++.|+
T Consensus        61 ~l~~l~h~ni~~~~~~~----------~~~----~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i  126 (280)
T cd05043          61 LLYGLSHQNILPILHVC----------IED----GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQI  126 (280)
T ss_pred             HHHhCCCCCCCeEEEEE----------ecC----CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHH
Confidence            57778999998654432          010    112456667765 56666654322110  01346778888999999


Q ss_pred             HHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC----CccCeeeeeeeccC
Q psy17422        450 LHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       450 L~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~----~~t~yv~tr~YraP  512 (512)
                      +.++.+ |.++++|+|||     |+|+++.. .+.+|++|||+++.....    .....-++..|+||
T Consensus       127 ~~~l~~LH~~~i~H~di~-----p~nil~~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~ap  188 (280)
T cd05043         127 ACGMSYLHKRGVIHKDIA-----ARNCVIDE-ELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMAL  188 (280)
T ss_pred             HHHHHHHHHCCEeecccC-----HhhEEEcC-CCcEEECCCCCcccccCCceEEeCCCCCcchhccCH
Confidence            999999 99999999999     99999964 488999999998732111    11122345567776

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.34  E-value=2.2e-07  Score=90.10  Aligned_cols=150  Identities=21%  Similarity=0.187  Sum_probs=97.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+++|.+............ .++  +++.++|+|++.....+.          ..   ..
T Consensus        14 ~~v~~~~~~~~~~-------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~----------~~---~~   73 (260)
T cd06606          14 GSVYLALDKDTGE-------LMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSER----------DE---EK   73 (260)
T ss_pred             eEEEEEEECCCCc-------EEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEe----------cC---CC
Confidence            4566666666666       6777765433211011111 223  578889999986554441          11   01


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+++++. .++..++.      .....+...+..++.+++.++.+ |..+++|+|++     |.||++.. .+.++
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~------~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~-----p~ni~i~~-~~~~~  141 (260)
T cd06606          74 NTLNIFLEYVSGGSLSSLLK------KFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIK-----GANILVDS-DGVVK  141 (260)
T ss_pred             CeEEEEEEecCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEEcC-CCCEE
Confidence            12677888884 45544443      22257788889999999999999 99999999999     99999976 58899


Q ss_pred             EecCCCCCCCCCCC----ccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENE----ITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~----~t~yv~tr~YraP  512 (512)
                      ++|||.+.......    .....++..|+||
T Consensus       142 l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~p  172 (260)
T cd06606         142 LADFGCAKRLGDIETGEGTGSVRGTPYWMAP  172 (260)
T ss_pred             EcccccEEecccccccccccCCCCCccccCH
Confidence            99999976322111    2334566667666

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.33  E-value=2.6e-07  Score=91.34  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.+.|+|++...+.+           ..     -+.+.+++++. .++..++.-     .+...+...+..++.+++.
T Consensus        60 ~l~~~~h~~i~~~~~~~-----------~~-----~~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~~l~~  118 (270)
T cd05056          60 IMRQFDHPHIVKLIGVI-----------TE-----NPVWIVMELAPLGELRSYLQV-----NKYSLDLASLILYSYQLST  118 (270)
T ss_pred             HHHhCCCCchhceeEEE-----------cC-----CCcEEEEEcCCCCcHHHHHHh-----CCCCCCHHHHHHHHHHHHH
Confidence            67888999999765543           11     12567888886 455555431     1223688889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..+++|+|||     |+||++.. .+.+|++|||+++.
T Consensus       119 ~l~~lH~~~~~H~dl~-----p~nili~~-~~~~~l~d~g~~~~  156 (270)
T cd05056         119 ALAYLESKRFVHRDIA-----ARNVLVSS-PDCVKLGDFGLSRY  156 (270)
T ss_pred             HHHHHHhCCeeccccC-----hheEEEec-CCCeEEccCceeee
Confidence            9999 99999999999     99999975 48899999999874

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.33  E-value=2.8e-07  Score=90.09  Aligned_cols=96  Identities=15%  Similarity=0.174  Sum_probs=72.4

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+|++...+.|           ..    ..+.+.+++++.. ++..++.-     .+.......+..++.+++.
T Consensus        52 ~l~~l~~~~i~~~~~~~-----------~~----~~~~~~v~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~~~l~~  111 (256)
T cd05112          52 VMMKLSHPKLVQLYGVC-----------TE----RSPICLVFEFMEHGCLSDYLRA-----QRGKFSQETLLGMCLDVCE  111 (256)
T ss_pred             HHHhCCCCCeeeEEEEE-----------cc----CCceEEEEEcCCCCcHHHHHHh-----CccCCCHHHHHHHHHHHHH
Confidence            67888999998655444           11    1246788888874 44444321     1234577888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..+++|+|+|     |+||++.. ++.+|++|||+++.
T Consensus       112 ~l~~lH~~~i~h~dl~-----p~ni~i~~-~~~~~l~d~g~~~~  149 (256)
T cd05112         112 GMAYLESSNVIHRDLA-----ARNCLVGE-NQVVKVSDFGMTRF  149 (256)
T ss_pred             HHHHHHHCCccccccc-----cceEEEcC-CCeEEECCCcceee
Confidence            9999 99999999999     99999964 58899999999873

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>PHA02882 putative serine/threonine kinase; Provisional

Probab=98.31  E-value=2.7e-07  Score=92.97  Aligned_cols=70  Identities=17%  Similarity=0.193  Sum_probs=57.0

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC---------CCCccCeeee
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH---------ENEITPYLVS  506 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~---------~~~~t~yv~t  506 (512)
                      .....+..++.|++.++.+ |..+|+|||||     |+||++.. ++.++++|||+|+...         ........+|
T Consensus       123 ~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiK-----p~Nill~~-~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt  196 (294)
T PHA02882        123 KNKKLIKNIMKDMLTTLEYIHEHGISHGDIK-----PENIMVDG-NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGT  196 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcC-CCcEEEEEcCCceeeccCCcccccccccccccCCC
Confidence            4567788999999999999 99999999999     99999965 4789999999987321         1122345799


Q ss_pred             eeeccC
Q psy17422        507 RFYRAP  512 (512)
Q Consensus       507 r~YraP  512 (512)
                      ++|+||
T Consensus       197 ~~y~ap  202 (294)
T PHA02882        197 LYYAGL  202 (294)
T ss_pred             ccccCH
Confidence            999987

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.31  E-value=8.5e-07  Score=88.34  Aligned_cols=113  Identities=13%  Similarity=0.038  Sum_probs=78.0

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCCh-HHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADT-TRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~-~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+.....+.           ...    ..+.+++++...+ ..++.     +.+...+......++.|++.
T Consensus        69 ~~~~l~h~niv~~~~~~~-----------~~~----~~~lv~ey~~~g~L~~~l~-----~~~~~~~~~~~~~i~~qi~~  128 (274)
T cd05076          69 LMSQVSHIHLAFVHGVCV-----------RGS----ENIMVEEFVEHGPLDVCLR-----KEKGRVPVAWKITVAQQLAS  128 (274)
T ss_pred             HHhcCCCCCeeeEEEEEE-----------eCC----ceEEEEecCCCCcHHHHHH-----hcCCCCCHHHHHHHHHHHHH
Confidence            678889999997655441           111    2568899998543 33332     12344677888899999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCC------CCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNES------KLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~------~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++.| |..+|+|+|||     |+||++...      +..+|++|||++......  ....++..|+||
T Consensus       129 ~l~~lH~~~iiH~dlk-----p~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~aP  189 (274)
T cd05076         129 ALSYLEDKNLVHGNVC-----AKNILLARLGLAEGTSPFIKLSDPGVSFTALSR--EERVERIPWIAP  189 (274)
T ss_pred             HHHHHHcCCccCCCCC-----cccEEEeccCcccCccceeeecCCccccccccc--cccccCCcccCc
Confidence            9999 99999999999     999998642      235899999987532111  112344556666

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG3653|consensus

Probab=98.31  E-value=3.4e-07  Score=95.28  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             cChHhHHHHhhhhcCCCCCchHHHHHHhh--CCCCCCCcCCchhhhhHHhhhhhhhcCCCC-CcceeEEecccc-CChHH
Q psy17422        348 ENFEEAMKAVNFALIPTTVPSSVASILND--NACVNLTSKSEPFWILAKAVKDFVDNEGNG-NLPLRGSLPDMT-ADTTR  423 (512)
Q Consensus       348 ~n~~eAik~v~~~~~~~~i~~~~~ell~~--~~~~ni~~~~~~fw~l~~alk~F~~~~~~~-~lPl~~~lpdm~-~d~~~  423 (512)
                      .|..||+|.....-. ... ..-++|++.  ++|+||+    .|-   .+     ++.+.+ ..-...++++-. .++..
T Consensus       232 ~~~~VAVKifp~~~k-qs~-~~Ek~Iy~lp~m~h~nIl----~Fi---~~-----ekr~t~~~~eywLVt~fh~kGsL~d  297 (534)
T KOG3653|consen  232 DNRLVAVKIFPEQEK-QSF-QNEKNIYSLPGMKHENIL----QFI---GA-----EKRGTADRMEYWLVTEFHPKGSLCD  297 (534)
T ss_pred             cCceeEEEecCHHHH-HHH-HhHHHHHhccCccchhHH----Hhh---ch-----hccCCccccceeEEeeeccCCcHHH
Confidence            356899988643210 111 012346555  5799987    331   11     111110 111344555543 67777


Q ss_pred             HHHhHHhhhhccCCChHHHHHHHHHHHHHhCC----------CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        424 YIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ----------PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       424 yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~----------h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      |++..-       .+......+...+.+||.|          |...|.|||+|     .+||+|-. ....-|+|||+|.
T Consensus       298 yL~~nt-------isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlk-----SkNVLvK~-DlTccIaDFGLAl  364 (534)
T KOG3653|consen  298 YLKANT-------ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLK-----SKNVLVKN-DLTCCIADFGLAL  364 (534)
T ss_pred             HHHhcc-------ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCcccccccc-----ccceEEcc-CCcEEeeccceeE
Confidence            775432       4555555566666666644          45689999999     99999954 5788899999987


Q ss_pred             C----CCCCCccCeeeeeeeccC
Q psy17422        494 W----SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~----~~~~~~t~yv~tr~YraP  512 (512)
                      .    .+.......|||+-||||
T Consensus       365 ~~~p~~~~~d~~~qVGT~RYMAP  387 (534)
T KOG3653|consen  365 RLEPGKPQGDTHGQVGTRRYMAP  387 (534)
T ss_pred             EecCCCCCcchhhhhhhhhhcCH
Confidence            2    233445569999999998

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.31  E-value=2.2e-07  Score=92.73  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=97.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++..+.       .+|+|.+.....  ....-.+|  ++..++|+|++.....|.          . .    -
T Consensus        33 ~~v~~~~~~~~~~-------~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~----------~-~----~   88 (286)
T cd06614          33 GEVYKATDRATGK-------EVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYL----------V-G----D   88 (286)
T ss_pred             eEEEEEEEccCCc-------EEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEE----------E-C----C
Confidence            4566666665555       667776543211  11111233  678889999987665552          1 1    1


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++. .++.+++....     ...+...+..++.+++.++.+ |..+|+|+|++     |+||++.. ++.+++
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~-----~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~-----p~ni~i~~-~~~~~l  157 (286)
T cd06614          89 ELWVVMEYMDGGSLTDIITQNF-----VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIK-----SDNILLSK-DGSVKL  157 (286)
T ss_pred             EEEEEEeccCCCcHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----hhhEEEcC-CCCEEE
Confidence            2677888887 56655554321     257888899999999999999 99999999999     99999974 588999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||++...  .........++..|+||
T Consensus       158 ~d~~~~~~~~~~~~~~~~~~~~~~y~~P  185 (286)
T cd06614         158 ADFGFAAQLTKEKSKRNSVVGTPYWMAP  185 (286)
T ss_pred             CccchhhhhccchhhhccccCCcccCCH
Confidence            999986521  11112233456677776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG2345|consensus

Probab=98.29  E-value=3.1e-07  Score=88.62  Aligned_cols=121  Identities=16%  Similarity=0.092  Sum_probs=86.4

Q ss_pred             HhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHH
Q psy17422        374 LNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQ  452 (512)
Q Consensus       374 l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~  452 (512)
                      -+..+|||+..+-      .+.+++-.    .+.--++..+|+-. .++.+++++.++  ++...++.++..++.++++|
T Consensus        72 ~rkf~s~~vl~l~------dh~l~~~~----D~~~~~yll~Pyy~~Gsl~d~i~~~k~--kg~~~sE~~iL~if~gic~g  139 (302)
T KOG2345|consen   72 HRKFNSPNVLRLV------DHQLREEK----DGKHEAYLLLPYYKRGSLLDEIERLKI--KGNFVSEAQILWIFLGICRG  139 (302)
T ss_pred             HHhhCCcchHHHH------HHHHHhhc----cCceeEEEEeehhccccHHHHHHHHhh--cCCccCHHHHHHHHHHHHHH
Confidence            4556777776432      23333322    23334889999976 568888876654  23358899999999999999


Q ss_pred             hCC-CCCC--CChHHHHhhccccccccccCCCCeEEEecCCCCCCCC----CC-------CccCeeeeeeeccC
Q psy17422        453 LGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH----EN-------EITPYLVSRFYRAP  512 (512)
Q Consensus       453 l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~----~~-------~~t~yv~tr~YraP  512 (512)
                      |.+ |...  ..|+|||     |.||++.. .+...+.|||.++..+    ++       ..+.--+|..||||
T Consensus       140 L~~lH~~~~~yAH~DiK-----P~NILls~-~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAP  207 (302)
T KOG2345|consen  140 LEALHEKEPPYAHRDIK-----PANILLSD-SGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAP  207 (302)
T ss_pred             HHHHhccCCcccccCCC-----cceeEecC-CCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCc
Confidence            999 9987  9999999     99999975 4889999999976211    11       12345678889998

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=98.28  E-value=4.2e-07  Score=89.29  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.....  . ... .+|  +++.++|+|++.....+           .. .    .++.+++++. .++..++.
T Consensus        32 ~~a~K~~~~~~~--~-~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~-~----~~~~v~e~~~~~~L~~~~~   92 (260)
T cd05067          32 KVAIKSLKQGSM--S-PEAFLAEANLMKQLQHPRLVRLYAVV-----------TQ-E----PIYIITEYMENGSLVDFLK   92 (260)
T ss_pred             eEEEEEecCCCC--c-HHHHHHHHHHHHhcCCcCeeeEEEEE-----------cc-C----CcEEEEEcCCCCCHHHHHH
Confidence            577776543211  1 112 333  68888999998654433           11 1    2678888886 45544442


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ..    .....+...+..++.|++.++.+ |..+++|+|||     |+|+++.. ++.++++|||+++.
T Consensus        93 ~~----~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~-----p~ni~i~~-~~~~~l~dfg~~~~  151 (260)
T cd05067          93 TP----EGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLR-----AANILVSE-TLCCKIADFGLARL  151 (260)
T ss_pred             hc----CCCCCCHHHHHHHHHHHHHHHHHHhcCCeeccccc-----HHhEEEcC-CCCEEEccCcceee
Confidence            11    11246778888999999999999 99999999999     99999875 48899999999863

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.27  E-value=5.4e-07  Score=89.26  Aligned_cols=119  Identities=18%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+...... ..... .+|  +++.+.|+||+.....+           ..  .+..-...+++++. .++..++.
T Consensus        35 ~~avK~~~~~~~~-~~~~~~~~ei~~l~~l~~~~i~~~~~~~-----------~~--~~~~~~~lv~e~~~~~~l~~~l~  100 (284)
T cd05038          35 QVAVKSLNHSGEE-QHRSDFEREIEILRTLDHENIVKYKGVC-----------EK--PGGRSLRLIMEYLPSGSLRDYLQ  100 (284)
T ss_pred             EEEEEEeccccch-HHHHHHHHHHHHHHhCCCCChheEEeee-----------ec--CCCCceEEEEecCCCCCHHHHHH
Confidence            6788776543221 01111 222  57888999998654433           11  01112567888886 45555543


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      -     .+...+...+..++.|++.++.+ |.++|+|+|+|     |+||++... +.++++|||+++.
T Consensus       101 ~-----~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~-----p~nil~~~~-~~~~l~dfg~~~~  158 (284)
T cd05038         101 R-----HRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLA-----ARNILVESE-DLVKISDFGLAKV  158 (284)
T ss_pred             h-----CccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHhEEEcCC-CCEEEcccccccc
Confidence            2     12247888899999999999999 99999999999     999999754 8899999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.26  E-value=7.3e-07  Score=87.46  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||++..+.+          .+. .    ..+.+++++.. ++..++.-.  -......+...+..++.|++.
T Consensus        55 ~l~~l~h~~i~~~~~~~----------~~~-~----~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~  117 (260)
T cd08222          55 LLSKLDHPAIVKFHASF----------LER-D----AFCIITEYCEGRDLDCKLEEL--KHTGKTLSENQVCEWFIQLLL  117 (260)
T ss_pred             HHHhCCCCcHHHHHHHH----------hcC-C----ceEEEEEeCCCCCHHHHHHHH--hhcccccCHHHHHHHHHHHHH
Confidence            67888999998543322          221 1    26678888874 554444321  122335788899999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..++.|+|++     |+|+++..  +.+|++|||+++..  .......+.++..|+||
T Consensus       118 ~l~~lH~~~i~h~~l~-----~~nili~~--~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~p  174 (260)
T cd08222         118 GVHYMHQRRILHRDLK-----AKNIFLKN--NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSP  174 (260)
T ss_pred             HHHHHHHcCccccCCC-----hhheEeec--CCEeecccCceeecCCCcccccCCCCCcCccCH
Confidence            9999 99999999999     99999853  56999999997632  11112234566677776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0608|consensus

Probab=98.22  E-value=9.5e-07  Score=94.65  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             HhHHHHhhhhc--CCCCCchH--HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFAL--IPTTVPSS--VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~--~~~~i~~~--~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      --|+|.++++-  ....+..-  .|.||.....+=||++.-.|          .+++ +    |+-+|.|.. +|.-+++
T Consensus       656 lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySF----------QDkd-n----LYFVMdYIPGGDmMSLL  720 (1034)
T KOG0608|consen  656 LYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSF----------QDKD-N----LYFVMDYIPGGDMMSLL  720 (1034)
T ss_pred             HHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEe----------ccCC-c----eEEEEeccCCccHHHHH
Confidence            45677766541  11222111  24477776655566554444          4443 2    999999987 5766665


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      --..||      .+.+.+.|+.++-.++.+ |..|.+|||||     |.||+++++ |.+|+.||||+.
T Consensus       721 IrmgIF------eE~LARFYIAEltcAiesVHkmGFIHRDiK-----PDNILIDrd-GHIKLTDFGLCT  777 (1034)
T KOG0608|consen  721 IRMGIF------EEDLARFYIAELTCAIESVHKMGFIHRDIK-----PDNILIDRD-GHIKLTDFGLCT  777 (1034)
T ss_pred             HHhccC------HHHHHHHHHHHHHHHHHHHHhccceecccC-----ccceEEccC-Cceeeeeccccc
Confidence            444554      455788899999999999 99999999999     999999876 999999999964

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.22  E-value=1.5e-06  Score=86.62  Aligned_cols=119  Identities=14%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhh---------hhccCCChHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLY---------RDQAGRDADVI  442 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy---------~~ka~~d~~~v  442 (512)
                      ++..++|+||+.....+          .. .    -+.+.+++++. .++..++.-....         ......+...+
T Consensus        60 ~l~~l~h~~i~~~~~~~----------~~-~----~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (280)
T cd05092          60 LLTVLQHQHIVRFYGVC----------TE-G----RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQM  124 (280)
T ss_pred             HHhcCCCCCCceEEEEE----------ec-C----CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHH
Confidence            67888999998654443          11 1    13678888886 5666665422100         00123577888


Q ss_pred             HHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        443 YRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       443 ~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      ..++.|++.++.+ |..+|+|+|+|     |+||++.. .+.+|++|||+++....    .......++..|+||
T Consensus       125 ~~~~~qi~~al~~LH~~~i~H~dlk-----p~nil~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05092         125 LAIASQIASGMVYLASLHFVHRDLA-----TRNCLVGQ-GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP  193 (280)
T ss_pred             HHHHHHHHHHHHHHHHCCeeccccc-----HhhEEEcC-CCCEEECCCCceeEcCCCceeecCCCccccccccCH
Confidence            9999999999999 99999999999     99999975 58899999999863211    111233445667776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.19  E-value=6.2e-07  Score=85.70  Aligned_cols=147  Identities=22%  Similarity=0.212  Sum_probs=96.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++..+.+|.       .+|+|.......... ... .+|  .++.++|+|++...+.+          ...     
T Consensus         3 g~v~~~~~~~~~~-------~~~~k~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~----------~~~-----   59 (244)
T smart00220        3 GKVYLARDKKTGK-------LVAIKVIKKEKIKKK-RERILREISILKKLKHPNIVRLYDVF----------EDE-----   59 (244)
T ss_pred             eEEEEEEECCCCc-------EEEEEEecccccccH-HHHHHHHHHHHHhCCCCcHHHHHhhe----------eeC-----
Confidence            3455566655555       677777653221110 112 222  56777899887544333          111     


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .....+++++.. ++..++.      .....+...+..++.+++.++.+ |..+|.|+|++     |.||.+... +.++
T Consensus        60 ~~~~l~~e~~~~~~L~~~~~------~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~-----~~ni~~~~~-~~~~  127 (244)
T smart00220       60 DKLYLVMEYCDGGDLFDLLK------KRGRLSEDEARFYARQILSALEYLHSNGIIHRDLK-----PENILLDED-GHVK  127 (244)
T ss_pred             CEEEEEEeCCCCCCHHHHHH------hccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcC-----HHHeEECCC-CcEE
Confidence            126677888876 5555543      22226778888999999999999 99999999999     999999754 8899


Q ss_pred             EecCCCCCCCCC-CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE-NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~-~~~t~yv~tr~YraP  512 (512)
                      ++|||.+..... .......++..|+||
T Consensus       128 l~d~~~~~~~~~~~~~~~~~~~~~~~~p  155 (244)
T smart00220      128 LADFGLARQLDPGGLLTTFVGTPEYMAP  155 (244)
T ss_pred             EccccceeeeccccccccccCCcCCCCH
Confidence            999999874322 133455667777776

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.15  E-value=1.6e-06  Score=101.82  Aligned_cols=139  Identities=14%  Similarity=0.065  Sum_probs=93.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++..+..|.       .+|+|.+....   .......++++.++||||++....+           ...    -+.
T Consensus       704 g~Vy~~~~~~~~~-------~vavK~~~~~~---~~~~~~~~~l~~l~HpnIv~~~~~~-----------~~~----~~~  758 (968)
T PLN00113        704 GASYKGKSIKNGM-------QFVVKEINDVN---SIPSSEIADMGKLQHPNIVKLIGLC-----------RSE----KGA  758 (968)
T ss_pred             eeEEEEEECCCCc-------EEEEEEccCCc---cccHHHHHHHhhCCCCCcceEEEEE-----------EcC----CCC
Confidence            4566666666665       88999875432   2222223467888999999766554           111    136


Q ss_pred             eEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-C---CCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        411 RGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P---SSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       411 ~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h---~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      +.++|+|. .++..+++         ..+......++.+++.|+.| |   ..+|+|||+|     |+||++... +..+
T Consensus       759 ~lv~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlk-----p~Nil~~~~-~~~~  823 (968)
T PLN00113        759 YLIHEYIEGKNLSEVLR---------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLS-----PEKIIIDGK-DEPH  823 (968)
T ss_pred             EEEEeCCCCCcHHHHHh---------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCC-----HHhEEECCC-CceE
Confidence            78999997 56655552         25667778899999999999 8   6799999999     999998643 4445


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +. +|.......  .+..++|..|+||
T Consensus       824 ~~-~~~~~~~~~--~~~~~~t~~y~aP  847 (968)
T PLN00113        824 LR-LSLPGLLCT--DTKCFISSAYVAP  847 (968)
T ss_pred             EE-ecccccccc--CCCccccccccCc
Confidence            44 555432211  1234778899998

>KOG1094|consensus

Probab=98.12  E-value=8.3e-07  Score=94.39  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=74.2

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +|..++||||+.+-.+.               -..-|+..++++|+ .|+.+|+.-...-    ..+......++.|+..
T Consensus       588 iLsqLkhPNIveLvGVC---------------~~DePicmI~EYmEnGDLnqFl~aheap----t~~t~~~vsi~tqias  648 (807)
T KOG1094|consen  588 ILSRLKHPNIVELLGVC---------------VQDDPLCMITEYMENGDLNQFLSAHELP----TAETAPGVSICTQIAS  648 (807)
T ss_pred             HHhccCCCCeeEEEeee---------------ecCCchHHHHHHHhcCcHHHHHHhccCc----ccccchhHHHHHHHHH
Confidence            57788999999765554               11237889999998 6888887533211    1233344458899999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      |+.| .+-+++|||+.     ++|+++.. ...+|+||||++|.
T Consensus       649 gmaYLes~nfVHrd~a-----~rNcLv~~-e~~iKiadfgmsR~  686 (807)
T KOG1094|consen  649 GMAYLESLNFVHRDLA-----TRNCLVDG-EFTIKIADFGMSRN  686 (807)
T ss_pred             HHHHHHhhchhhcccc-----ccceeecC-cccEEecCcccccc
Confidence            9999 89999999999     99999974 58999999999993

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.09  E-value=3.3e-06  Score=84.32  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLL  450 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL  450 (512)
                      ++..+ +|+||+.....|.           ..    ..++.+++++.. ++..++.      .+.......+..++.|++
T Consensus        57 ~l~~~~~~~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~~~------~~~~~~~~~~~~~~~ql~  115 (288)
T cd05583          57 VLEAVRRCPFLVTLHYAFQ-----------TD----TKLHLILDYVNGGELFTHLY------QREHFTESEVRVYIAEIV  115 (288)
T ss_pred             HHHhccCCcchhhhheeee-----------cC----CEEEEEEecCCCCcHHHHHh------hcCCcCHHHHHHHHHHHH
Confidence            46666 5889986555441           11    126788888864 5444432      223467778888999999


Q ss_pred             HHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CC-CccCeeeeeeeccC
Q psy17422        451 HQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--EN-EITPYLVSRFYRAP  512 (512)
Q Consensus       451 ~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~-~~t~yv~tr~YraP  512 (512)
                      .++.+ |..+++|+|++     |.||++.. ++.++++|||+++...  .. .-....++..|+||
T Consensus       116 ~~l~~lH~~~~~H~dl~-----p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  175 (288)
T cd05583         116 LALDHLHQLGIIYRDIK-----LENILLDS-EGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAP  175 (288)
T ss_pred             HHHHHHHHCCeeccCCC-----HHHeEECC-CCCEEEEECccccccccccccccccccCCccccCH
Confidence            99999 99999999999     99999975 4789999999987321  11 11234567778776

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0199|consensus

Probab=98.08  E-value=2.1e-06  Score=93.01  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=84.2

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L  427 (512)
                      .||+|.+...-... +..+ ++|  +|-.+.|+|++++....          ++      -|+.++++.....+     |
T Consensus       140 ~VAVKclr~d~l~~-~mddflrEas~M~~L~H~hliRLyGvV----------l~------qp~mMV~ELaplGS-----L  197 (1039)
T KOG0199|consen  140 NVAVKCLRDDSLNA-IMDDFLREASHMLKLQHPHLIRLYGVV----------LD------QPAMMVFELAPLGS-----L  197 (1039)
T ss_pred             eEEEEeccCCccch-hHHHHHHHHHHHHhccCcceeEEeeee----------cc------chhhHHhhhcccch-----H
Confidence            68888886543322 4444 677  67778999999776654          10      24555666555322     2


Q ss_pred             HHhhh--hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC
Q psy17422        428 QQLYR--DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS  495 (512)
Q Consensus       428 ~~iy~--~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~  495 (512)
                      .+..+  .++.+-+..+..|+.|+..+++| ..++.+|||+.     ++||++-. ...+||||||+.|..
T Consensus       198 ldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLA-----ARNlllas-prtVKI~DFGLmRaL  262 (1039)
T KOG0199|consen  198 LDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLA-----ARNLLLAS-PRTVKICDFGLMRAL  262 (1039)
T ss_pred             HHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-----hhhheecc-cceeeeecccceecc
Confidence            22222  24456777888999999999999 89999999999     99999986 478999999998843

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=98.07  E-value=2.5e-07  Score=91.39  Aligned_cols=97  Identities=20%  Similarity=0.144  Sum_probs=72.5

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||++....+.               ..-++..++++|. +++..|+.-.    .+...+......++.|++.
T Consensus        54 ~l~~l~h~ni~~~~g~~~---------------~~~~~~lv~e~~~~g~L~~~L~~~----~~~~~~~~~~~~i~~~i~~  114 (259)
T PF07714_consen   54 ILRKLRHPNIVKLYGFCI---------------ENEPLFLVMEYCPGGSLDDYLKSK----NKEPLSEQQRLSIAIQIAE  114 (259)
T ss_dssp             HHHTHSBTTBE-EEEEEE---------------SSSSEEEEEE--TTEBHHHHHHHT----CTTTSBHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccc---------------cccccccccccccccccccccccc----ccccccccccccccccccc
Confidence            577779999997665541               1123788899987 4666666533    1244778888999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.| |.++|+|++++     ++||++.. ++.+|++|||+++.
T Consensus       115 ~l~~Lh~~~iiH~~l~-----~~nill~~-~~~~Kl~~f~~~~~  152 (259)
T PF07714_consen  115 ALSYLHSNNIIHGNLS-----PSNILLDS-NGQVKLSDFGLSRP  152 (259)
T ss_dssp             HHHHHHHTTEEEST-S-----GGGEEEET-TTEEEEESTTTGEE
T ss_pred             cccccccccccccccc-----cccccccc-cccccccccccccc
Confidence            9999 99999999999     99999975 48999999999763

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0696|consensus

Probab=98.05  E-value=2.8e-06  Score=87.14  Aligned_cols=137  Identities=18%  Similarity=0.105  Sum_probs=90.0

Q ss_pred             hHhHHHHhhhhc--CCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHH
Q psy17422        350 FEEAMKAVNFAL--IPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRY  424 (512)
Q Consensus       350 ~~eAik~v~~~~--~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~y  424 (512)
                      +--|||-+++..  |...+.-.+.|  +|... +-|.++++.+.|.        =.++       |+-+|+++...--.|
T Consensus       375 ELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQ--------TmDR-------LyFVMEyvnGGDLMy  439 (683)
T KOG0696|consen  375 ELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQ--------TMDR-------LYFVMEYVNGGDLMY  439 (683)
T ss_pred             hhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhh--------hhhh-------eeeEEEEecCchhhh
Confidence            345888877642  33333222222  44332 2234454444442        2222       889999998543233


Q ss_pred             HHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC--CCCCcc
Q psy17422        425 IALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS--HENEIT  501 (512)
Q Consensus       425 v~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~--~~~~~t  501 (512)
                      - +|++    ....+.....|+.++.-+|-+ |+++|+-||+|     ..|+++.. .|.+||+|||++..+  .+..-.
T Consensus       440 h-iQQ~----GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLK-----LDNvmLd~-eGHiKi~DFGmcKEni~~~~TTk  508 (683)
T KOG0696|consen  440 H-IQQV----GKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLK-----LDNVMLDS-EGHIKIADFGMCKENIFDGVTTK  508 (683)
T ss_pred             H-HHHh----cccCCchhhhhhHHHHHHhhhhhcCCeeeeecc-----ccceEecc-CCceEeeecccccccccCCccee
Confidence            2 3333    223334455688889899988 99999999999     99999975 599999999999843  344556


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      +++||+-|+||
T Consensus       509 TFCGTPdYiAP  519 (683)
T KOG0696|consen  509 TFCGTPDYIAP  519 (683)
T ss_pred             eecCCCccccc
Confidence            89999999998

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=97.97  E-value=4.4e-06  Score=79.25  Aligned_cols=148  Identities=22%  Similarity=0.222  Sum_probs=95.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++....++.       ..|+|.............-.+|  .++.++|+|++.....+          ..     ..
T Consensus        13 ~~v~~~~~~~~~~-------~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~----------~~-----~~   70 (225)
T smart00221       13 GKVYLARDKGTGE-------LVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVF----------ED-----PE   70 (225)
T ss_pred             eEEEEEEEcCCCc-------EEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeee----------ec-----CC
Confidence            3455565555554       6677776543211011111222  56777888887544332          11     01


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccC-CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAG-RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~-~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ....+++++.. ++.+++..      ... .+...+..++.+++.++.+ |..++.|+|++     +.|+++... +.++
T Consensus        71 ~~~~v~e~~~~~~L~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~-----~~ni~v~~~-~~~~  138 (225)
T smart00221       71 PLYLVMEYCEGGDLFDYLRK------KGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLK-----PENILLGMD-GLVK  138 (225)
T ss_pred             ceEEEEeccCCCCHHHHHHh------cccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcCC-CCEE
Confidence            25677888775 55555442      222 6778888999999999999 99999999999     999999754 8899


Q ss_pred             EecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      ++|||.+......   ....+.++..|++|
T Consensus       139 l~d~g~~~~~~~~~~~~~~~~~~~~~~~~p  168 (225)
T smart00221      139 LADFGLARFIHRDLAALLKTVKGTPFYLAP  168 (225)
T ss_pred             EeeCceeeEecCcccccccceeccCCcCCH
Confidence            9999997733221   23456667777776

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG2052|consensus

Probab=97.94  E-value=8.4e-06  Score=84.56  Aligned_cols=134  Identities=16%  Similarity=0.107  Sum_probs=88.8

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HH--hhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--IL--NDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll--~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      .||+|-.+    +...++-.||  |.  .+++|+||...-      +.-.     ++.+....|..+-.|-+ +++..|+
T Consensus       236 ~VAVKiF~----srdE~SWfrEtEIYqTvmLRHENILgFI------aaD~-----~~~gs~TQLwLvTdYHe~GSL~DyL  300 (513)
T KOG2052|consen  236 DVAVKIFS----SRDERSWFRETEIYQTVMLRHENILGFI------AADN-----KDNGSWTQLWLVTDYHEHGSLYDYL  300 (513)
T ss_pred             ceEEEEec----ccchhhhhhHHHHHHHHHhccchhhhhh------hccc-----cCCCceEEEEEeeecccCCcHHHHH
Confidence            77887643    3444454555  43  457899997421      0000     01122334677666655 5666665


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-C--------CCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P--------SSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH  496 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h--------~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~  496 (512)
                      ..       ...+......++..+..||.+ |        ...|.|||+|     ..||+|-+ ++..-|+|+|+|....
T Consensus       301 ~r-------~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlK-----SKNILVKk-n~~C~IADLGLAv~h~  367 (513)
T KOG2052|consen  301 NR-------NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLK-----SKNILVKK-NGTCCIADLGLAVRHD  367 (513)
T ss_pred             hh-------ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccc-----cccEEEcc-CCcEEEeeceeeEEec
Confidence            43       346777888888888888865 5        3589999999     99999965 4889999999986221


Q ss_pred             ------CCCccCeeeeeeeccC
Q psy17422        497 ------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       497 ------~~~~t~yv~tr~YraP  512 (512)
                            +-....-|||.-||||
T Consensus       368 ~~t~~idi~~N~rVGTKRYMAP  389 (513)
T KOG2052|consen  368 SDTDTIDIPPNPRVGTKRYMAP  389 (513)
T ss_pred             ccCCcccCCCCCccceeeccCh
Confidence                  1234578999999999

>KOG0610|consensus

Probab=97.94  E-value=9.7e-06  Score=83.43  Aligned_cols=98  Identities=17%  Similarity=0.043  Sum_probs=77.9

Q ss_pred             HHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHH
Q psy17422        370 VASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQ  448 (512)
Q Consensus       370 ~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~q  448 (512)
                      -+|||..++||.+..+...|           +.+..    ++.+||+|. .|+....+-|    ....+.+..++.|+.+
T Consensus       127 E~eIL~~lDHPFlPTLYa~f-----------et~~~----~cl~meyCpGGdL~~LrqkQ----p~~~fse~~aRFYaAE  187 (459)
T KOG0610|consen  127 EREILSLLDHPFLPTLYASF-----------ETDKY----SCLVMEYCPGGDLHSLRQKQ----PGKRFSESAARFYAAE  187 (459)
T ss_pred             HHHHHHhcCCCccchhhhee-----------eccce----eEEEEecCCCccHHHHHhhC----CCCccchhhHHHHHHH
Confidence            46699999999999887777           33333    779999987 4554433222    2234788899999999


Q ss_pred             HHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCC
Q psy17422        449 LLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSA  492 (512)
Q Consensus       449 lL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGla  492 (512)
                      ++.||.| |-.||+-||+|     |+||++.. .|++-+.||-++
T Consensus       188 vl~ALEYLHmlGivYRDLK-----PENILvre-dGHIMLsDFDLS  226 (459)
T KOG0610|consen  188 VLLALEYLHMLGIVYRDLK-----PENILVRE-DGHIMLSDFDLS  226 (459)
T ss_pred             HHHHHHHHHhhceeeccCC-----cceeEEec-CCcEEeeecccc
Confidence            9999999 99999999999     99999964 599999999774

>KOG0200|consensus

Probab=97.83  E-value=1.6e-05  Score=88.66  Aligned_cols=126  Identities=13%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             ChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHH
Q psy17422        349 NFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRY  424 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~y  424 (512)
                      ...+|+|.............-..|  +|..+ +|+||+.+....       .        ..-|+..+++++. .++.+|
T Consensus       328 ~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~-------t--------~~~~~~~v~Ey~~~G~L~~~  392 (609)
T KOG0200|consen  328 YVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGAC-------T--------QDGPLYVIVEYAEHGDLLEF  392 (609)
T ss_pred             eEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeee-------c--------cCCceEEEEEeccCCcHHHH
Confidence            457888887654333222222344  45554 599998654433       1        1236889999987 788888


Q ss_pred             HHhHH---hhhhc-------cCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        425 IALQQ---LYRDQ-------AGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       425 v~L~~---iy~~k-------a~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ++-.+   .+...       .......+..+..|+..|..| ++..++|||+-     ++||++..+ ..+|++|||+||
T Consensus       393 Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLA-----aRNVLi~~~-~~~kIaDFGlar  466 (609)
T KOG0200|consen  393 LRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLA-----ARNVLITKN-KVIKIADFGLAR  466 (609)
T ss_pred             HHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhh-----hhhEEecCC-CEEEEcccccee
Confidence            87655   11111       125667788899999999999 99999999999     999999765 799999999999


Q ss_pred             CC
Q psy17422        494 WS  495 (512)
Q Consensus       494 ~~  495 (512)
                      ..
T Consensus       467 ~~  468 (609)
T KOG0200|consen  467 DH  468 (609)
T ss_pred             cc
Confidence            53

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=97.81  E-value=1.2e-05  Score=74.54  Aligned_cols=97  Identities=22%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      .++.++|+++......+.           ..    .....+++.+. .++..++....     ...+...+..++.+++.
T Consensus        44 ~~~~l~~~~i~~~~~~~~-----------~~----~~~~~~~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~l~~  103 (215)
T cd00180          44 ILKKLNHPNIVKLYGVFE-----------DE----NHLYLVMEYCEGGSLKDLLKENE-----GKLSEDEILRILLQILE  103 (215)
T ss_pred             HHHhcCCCCeeeEeeeee-----------cC----CeEEEEEecCCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHH
Confidence            577788888876555442           10    12567788887 55555544221     34788889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ++.+ |..++.|+|++     |.||++....+.++++|||.+..
T Consensus       104 ~l~~lh~~~~~H~dl~-----~~ni~~~~~~~~~~l~d~~~~~~  142 (215)
T cd00180         104 GLEYLHSNGIIHRDLK-----PENILLDSDNGKVKLADFGLSKL  142 (215)
T ss_pred             HHHHHHhCCeeccCCC-----HhhEEEeCCCCcEEEecCCceEE
Confidence            9999 99999999999     99999976247899999999763

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0590|consensus

Probab=97.75  E-value=1.1e-05  Score=89.40  Aligned_cols=87  Identities=23%  Similarity=0.177  Sum_probs=66.2

Q ss_pred             eccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCC
Q psy17422        414 LPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSA  492 (512)
Q Consensus       414 lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGla  492 (512)
                      |+++..|+.+.+.-.      .......+-.+++|++.|+.| |..+|.|||+|     ++|++++.. +.+|++|||.+
T Consensus       400 mE~~~~Dlf~~~~~~------~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK-----~enll~~~~-g~lki~Dfg~~  467 (601)
T KOG0590|consen  400 MEYCPYDLFSLVMSN------GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLK-----LENLLVTEN-GILKIIDFGAA  467 (601)
T ss_pred             hhcccHHHHHHHhcc------cccchhhhhHHHHHHHHHHHHHHhcCceeccCc-----cccEEEecC-CceEEeecCcc
Confidence            666666665555432      124555777889999999999 99999999999     999999864 89999999997


Q ss_pred             CC----CCC--CCccCeeeeeeeccC
Q psy17422        493 SW----SHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       493 r~----~~~--~~~t~yv~tr~YraP  512 (512)
                      ..    .+.  ......+|+..|.||
T Consensus       468 ~vf~~~~e~~~~~~~g~~gS~pY~ap  493 (601)
T KOG0590|consen  468 SVFRYPWEKNIHESSGIVGSDPYLAP  493 (601)
T ss_pred             eeeccCcchhhhhhcCcccCCcCcCc
Confidence            52    111  235677888888887

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.73  E-value=4.2e-05  Score=74.95  Aligned_cols=118  Identities=21%  Similarity=0.196  Sum_probs=82.0

Q ss_pred             HHhhCCCC-CCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACV-NLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~-ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      ++..+.|+ +++...+.|           ...+    ....+++++......  .+..............+..++.|++.
T Consensus        50 ~~~~~~~~~~i~~~~~~~-----------~~~~----~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (384)
T COG0515          50 ILASLNHPPNIVKLYDFF-----------QDEG----SLYLVMEYVDGGSLE--DLLKKIGRKGPLSESEALFILAQILS  112 (384)
T ss_pred             HHHHccCCcceeeEEEEE-----------ecCC----EEEEEEecCCCCcHH--HHHHhcccccCCCHHHHHHHHHHHHH
Confidence            56777776 577655555           1111    156778887754322  11111100024777889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--------CCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--------NEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--------~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+++|||+|     |+|+++.......+++|||.++....        .....+++|.+|+||
T Consensus       113 ~l~~~H~~~~~hrd~k-----p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p  177 (384)
T COG0515         113 ALEYLHSKGIIHRDIK-----PENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAP  177 (384)
T ss_pred             HHHHHHhCCeeccCCC-----HHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCH
Confidence            9999 99999999999     99999976533799999999873221        135788999999998

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=97.72  E-value=3.1e-05  Score=84.26  Aligned_cols=70  Identities=26%  Similarity=0.322  Sum_probs=54.9

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC-CCCccC--eeeeeeeccC
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH-ENEITP--YLVSRFYRAP  512 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~-~~~~t~--yv~tr~YraP  512 (512)
                      .+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+|++|||+++... ....+.  -.+|+.|+||
T Consensus       306 ~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLK-----p~NILl~~-~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aP  379 (507)
T PLN03224        306 RDINVIKGVMRQVLTGLRKLHRIGIVHRDIK-----PENLLVTV-DGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPP  379 (507)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCc-----hHhEEECC-CCcEEEEeCcCccccccCCccCccccCCCcceeCh
Confidence            5677888999999999999 99999999999     99999975 4789999999986321 111121  2336788887

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=97.70  E-value=1.8e-05  Score=74.82  Aligned_cols=73  Identities=10%  Similarity=-0.007  Sum_probs=56.9

Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      +.+|+++...+.....+.     +...+...+..++.|++.++.+ |. .+|+|+|+|     |+||++.  .+.++++|
T Consensus        93 ~lVmE~~~g~~~~~~~l~-----~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlk-----P~NIll~--~~~~~liD  160 (190)
T cd05145          93 VLVMEFIGDDGSPAPRLK-----DVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLS-----EYNILYH--DGKPYIID  160 (190)
T ss_pred             EEEEEEecCCCchhhhhh-----hccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----hhhEEEE--CCCEEEEE
Confidence            578899876532221122     2345677888999999999999 88 999999999     9999997  47899999


Q ss_pred             CCCCCCC
Q psy17422        489 FGSASWS  495 (512)
Q Consensus       489 fGlar~~  495 (512)
                      ||+++..
T Consensus       161 FG~a~~~  167 (190)
T cd05145         161 VSQAVEL  167 (190)
T ss_pred             cccceec
Confidence            9998743

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=97.70  E-value=2.3e-05  Score=74.41  Aligned_cols=71  Identities=10%  Similarity=-0.006  Sum_probs=55.2

Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC--CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ--PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~--h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      ..+|+++..+......+.     ....+...+..++.|++.++.+  |..+|+|+|+|     |+||++..  +.++++|
T Consensus        93 ~iVmE~i~g~~l~~~~~~-----~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlk-----P~NIli~~--~~v~LiD  160 (190)
T cd05147          93 VLVMEFIGDDGWAAPRLK-----DAPLSESKARELYLQVIQIMRILYQDCRLVHADLS-----EYNLLYHD--GKLYIID  160 (190)
T ss_pred             EEEEEEeCCCCCcchhhh-----cCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEEEC--CcEEEEE
Confidence            478999876432111121     1246788899999999999998  58899999999     99999963  6799999


Q ss_pred             CCCCC
Q psy17422        489 FGSAS  493 (512)
Q Consensus       489 fGlar  493 (512)
                      ||+|.
T Consensus       161 FG~a~  165 (190)
T cd05147         161 VSQSV  165 (190)
T ss_pred             ccccc
Confidence            99987

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=97.69  E-value=0.00025  Score=64.14  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=59.6

Q ss_pred             CcEEEEcCChHHHHHHHHHH---hcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         13 ARICLINATGLGTEILKSLV---LPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLv---l~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ..|.++|||-+|--++-+|.   +-|..+|.++|.+.|++.|+---  .--..+|.+|++-+++ |-.-.+.-++++..+
T Consensus        19 GeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi~r-l~~~~f~r~V~a~pE   95 (217)
T COG4015          19 GEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFIKR-LGRVHFGRRVEAFPE   95 (217)
T ss_pred             ceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHHHH-hCcCCCCceeecccc
Confidence            35999999999999999997   57999999999999999997531  2234689999976654 344455657777777


Q ss_pred             CCc
Q psy17422         90 NPQ   92 (512)
Q Consensus        90 ~~~   92 (512)
                      .++
T Consensus        96 ~it   98 (217)
T COG4015          96 NIT   98 (217)
T ss_pred             ccc
Confidence            665

>PRK10345 hypothetical protein; Provisional

Probab=97.65  E-value=2.6e-05  Score=75.32  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=60.2

Q ss_pred             HHhhC-----CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc--C-ChHHHHHhHHhhhhccCCChHHHHH
Q psy17422        373 ILNDN-----ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT--A-DTTRYIALQQLYRDQAGRDADVIYR  444 (512)
Q Consensus       373 ll~~~-----~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~--~-d~~~yv~L~~iy~~ka~~d~~~v~~  444 (512)
                      ++..+     .||||+...+.|           +.+...-.-...+++++.  + ++..+++      +. ..+..  ..
T Consensus        49 ~l~~L~~~~~~h~nIvr~yg~~-----------et~~g~g~v~~~I~e~~G~~~~tL~~~l~------~~-~~~e~--~~  108 (210)
T PRK10345         49 YYAHLSRRLIDWSGIPRYYGTV-----------ETDCGTGYVYDVIADFDGKPSITLTEFAE------QC-RYEED--VA  108 (210)
T ss_pred             HHHHhhccCCCCcccceeeEEE-----------EeCCCCeEEEEEEecCCCCcchhHHHHHH------cc-cccHh--HH
Confidence            45655     579998776655           222111111335677633  3 5555552      11 23333  34


Q ss_pred             HHHHHHHHh-CC-CCCCCChHHHHhhccccccccccCC---CCeEEEecC-CCCC
Q psy17422        445 RAQQLLHQL-GQ-PSSAITEAQVKLFCRNASFIHVNES---KLVLKLCDF-GSAS  493 (512)
Q Consensus       445 ~~~qlL~~l-~~-h~~~I~hrdIK~Fc~n~~nIll~~~---~~~~Kl~Df-Glar  493 (512)
                      ++.++|.++ .| |.++|+|||||     |+||++.+.   ...++++|| |...
T Consensus       109 ~~~~~L~~l~~yLh~~~IvhrDlK-----p~NILl~~~~~~~~~~~LiDg~G~~~  158 (210)
T PRK10345        109 QLRQLLKKLKRYLLDNRIVTMELK-----PQNILCQRISESEVIPVVCDNIGEST  158 (210)
T ss_pred             HHHHHHHHHHHHHHHCCEeecCCC-----HHHEEEeccCCCCCcEEEEECCCCcc
Confidence            578888888 78 99999999999     999999742   237999995 5543

>KOG1025|consensus

Probab=97.60  E-value=2.4e-05  Score=86.44  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             ChHhHHHHhhhhcCCCCCchH----HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CCh
Q psy17422        349 NFEEAMKAVNFALIPTTVPSS----VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADT  421 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~----~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~  421 (512)
                      |..||+|-+..    ...++.    +.|  .|..+.|||++++-..-      +-.+          +..+..+|. ..+
T Consensus       725 KipVaiKvl~~----~t~~~~s~e~LdeAl~masldHpnl~RLLgvc------~~s~----------~qlvtq~mP~G~L  784 (1177)
T KOG1025|consen  725 KIPVAIKVLIE----FTSPKASIELLDEALRMASLDHPNLLRLLGVC------MLST----------LQLVTQLMPLGCL  784 (1177)
T ss_pred             cceeEEEEeec----cCCchhhHHHHHHHHHHhcCCCchHHHHhhhc------ccch----------HHHHHHhcccchH
Confidence            44567766433    233322    334  57778999998654322      1011          334556665 567


Q ss_pred             HHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        422 TRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       422 ~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      .+|++..     +...-...+..+.+|+.+|+.| |...++|||+-     ++|++|... ..+|+.|||+|+
T Consensus       785 lDyvr~h-----r~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLa-----aRNVLVksP-~hvkitdfgla~  846 (1177)
T KOG1025|consen  785 LDYVREH-----RDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLA-----ARNVLVKSP-NHVKITDFGLAK  846 (1177)
T ss_pred             HHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHhcchhhhhhh-----hhheeecCC-CeEEEEecchhh
Confidence            7777652     3446667888999999999999 99999999999     999999765 899999999987

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.57  E-value=0.00047  Score=69.70  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|+..|+++|+|+|.+                   ..||+.+++.+.+.++.+.+.... 
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~-  184 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS-  184 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence            456789999999999999999999999999999766                   268889999988877765443221 


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .+       .+.+.++|+||++.
T Consensus       185 ~~-------~~~~~~aDiVInaT  200 (284)
T PRK12549        185 DL-------AAALAAADGLVHAT  200 (284)
T ss_pred             ch-------HhhhCCCCEEEECC
Confidence            11       22346789999974

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.55  E-value=0.00063  Score=65.31  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |++.+|+|||.|.+|...++.|...| .++++|+.+
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPE   42 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Confidence            78899999999999999999999999 579999653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.52  E-value=0.0003  Score=63.06  Aligned_cols=76  Identities=20%  Similarity=0.263  Sum_probs=55.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      .|++++|+|+|+||.|..+++.|...|+++|+|+..+                   ..||+.+++.+    +...+....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~~   65 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAIP   65 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Cccccceee
Confidence            5789999999999999999999999999999998643                   24676666666    444444332


Q ss_pred             CCCcccccCCcccccccceEEecCC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                      -.      ...+.+.++|+||++..
T Consensus        66 ~~------~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   66 LE------DLEEALQEADIVINATP   84 (135)
T ss_dssp             GG------GHCHHHHTESEEEE-SS
T ss_pred             HH------HHHHHHhhCCeEEEecC
Confidence            11      11256789999999743

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.34  E-value=0.00013  Score=68.12  Aligned_cols=72  Identities=11%  Similarity=-0.025  Sum_probs=54.1

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ...+++++..++..+..|...-.     + .....++.+++.++.+ |. .+|+|+|+|     |+|+++.  .+.++++
T Consensus        90 ~~lv~e~~~g~~~~~~~l~~~~~-----~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~-----p~Nili~--~~~~~li  156 (187)
T cd05119          90 HVLVMEFIGGDGIPAPRLKDVRL-----L-EDPEELYDQILELMRKLYREAGLVHGDLS-----EYNILVD--DGKVYII  156 (187)
T ss_pred             CEEEEEEeCCCCccChhhhhhhh-----c-ccHHHHHHHHHHHHHHHhhccCcCcCCCC-----hhhEEEE--CCcEEEE
Confidence            35678888765433334443321     1 4566788899999988 88 999999999     9999997  5789999


Q ss_pred             cCCCCCC
Q psy17422        488 DFGSASW  494 (512)
Q Consensus       488 DfGlar~  494 (512)
                      |||.++.
T Consensus       157 Dfg~a~~  163 (187)
T cd05119         157 DVPQAVE  163 (187)
T ss_pred             ECccccc
Confidence            9999873

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.30  E-value=0.0015  Score=62.90  Aligned_cols=103  Identities=13%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      |++.+|+|||.|.+|..-++.|...|. ++|+++.+.-                         ..+.++-..-+++....
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~~   60 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLAR   60 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEeC
Confidence            678899999999999999999999996 6999987611                         11112211113444333


Q ss_pred             CCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCcc
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQS  169 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  169 (512)
                      ...                                                                       .+.+.+
T Consensus        61 ~~~-----------------------------------------------------------------------~~dl~~   69 (205)
T TIGR01470        61 CFD-----------------------------------------------------------------------ADILEG   69 (205)
T ss_pred             CCC-----------------------------------------------------------------------HHHhCC
Confidence            322                                                                       123567


Q ss_pred             ccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEE
Q psy17422        170 FHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSI  209 (512)
Q Consensus       170 ~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  209 (512)
                      +++||.+++..+....+...|++.++|+-.+....+..++
T Consensus        70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~  109 (205)
T TIGR01470        70 AFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFI  109 (205)
T ss_pred             cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEE
Confidence            8999999988888899999999999999776655544443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1345|consensus

Probab=97.24  E-value=0.00022  Score=70.11  Aligned_cols=53  Identities=26%  Similarity=0.362  Sum_probs=44.2

Q ss_pred             CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC-CeEEEecCCCCC
Q psy17422        436 GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK-LVLKLCDFGSAS  493 (512)
Q Consensus       436 ~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~-~~~Kl~DfGlar  493 (512)
                      ..-+...+....|++.++++ |+.+++|||+|     .+||++-+.. ..+|+||||+.+
T Consensus       117 GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK-----~eNiLif~~df~rvKlcDFG~t~  171 (378)
T KOG1345|consen  117 GIGEANTKKVFAQLLSAIEFMHSKNLVHRDLK-----AENILIFDADFYRVKLCDFGLTR  171 (378)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhccchhhcccc-----cceEEEecCCccEEEeeeccccc
Confidence            34455667778999999999 99999999999     9999985432 479999999976

>KOG1164|consensus

Probab=97.18  E-value=0.00039  Score=71.39  Aligned_cols=93  Identities=18%  Similarity=0.081  Sum_probs=65.9

Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC----CeEE
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK----LVLK  485 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~----~~~K  485 (512)
                      +.+|.....++..+.+   .+. ........+..+..|++.+|.+ |..+++|||||     |.|+.+....    ..+.
T Consensus        97 ~iVM~l~G~sL~dl~~---~~~-~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiK-----p~N~~~g~~~~~~~~~~~  167 (322)
T KOG1164|consen   97 FIVMSLLGPSLEDLRK---RNP-PGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIK-----PENFVVGQSSRSEVRTLY  167 (322)
T ss_pred             EEEEeccCccHHHHHH---hCC-CCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcC-----HHHeeecCCCCcccceEE
Confidence            4556666566554332   222 2347788888999999999999 99999999999     9999987543    4688


Q ss_pred             EecCCCCC--C----C-----CCCC-ccCeeeeeeeccC
Q psy17422        486 LCDFGSAS--W----S-----HENE-ITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar--~----~-----~~~~-~t~yv~tr~YraP  512 (512)
                      +.|||++|  .    .     +... -..+.||.-|.++
T Consensus       168 llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~  206 (322)
T KOG1164|consen  168 LLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASI  206 (322)
T ss_pred             EEecCCCccccccCCCCcccccCCCCccCCCCccccccH
Confidence            99999998  2    1     1111 2346688877653

>smart00090 RIO RIO-like kinase

Probab=97.09  E-value=0.00021  Score=70.30  Aligned_cols=72  Identities=7%  Similarity=0.021  Sum_probs=54.1

Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC-CChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA-ITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~-I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      +.+++++..++-...     ...+...+...+..++.|++.++.+ |..+ |+|+|+|     |+||++.  .+.++++|
T Consensus       124 ~lV~E~~~g~~L~~~-----~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dik-----p~NIli~--~~~i~LiD  191 (237)
T smart00090      124 VLVMEFIGGDGLPAP-----RLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLS-----EYNILVH--DGKVVIID  191 (237)
T ss_pred             eEEEEEecCCccccc-----ccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCC-----hhhEEEE--CCCEEEEE
Confidence            477888876431111     1112234555677889999999999 9999 9999999     9999997  47799999


Q ss_pred             CCCCCC
Q psy17422        489 FGSASW  494 (512)
Q Consensus       489 fGlar~  494 (512)
                      ||.+..
T Consensus       192 Fg~a~~  197 (237)
T smart00090      192 VSQSVE  197 (237)
T ss_pred             Chhhhc
Confidence            999873

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.01  E-value=0.0062  Score=56.05  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=32.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|++.+|+|+|.|.+|...++.|...|. ++++|+.+
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~   45 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE   45 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence            3788999999999999999999999997 69999655

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.99  E-value=0.003  Score=66.17  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=31.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|++|+-++.+|+..|.++|++.|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            589999999999999999999999999999866

>KOG4158|consensus

Probab=96.89  E-value=0.0008  Score=69.41  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC---CCeEE
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES---KLVLK  485 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~---~~~~K  485 (512)
                      ++.+|---..++..|+.-+.       .....-.-++.|+|+++.+ |.++|.|||+|     ..||++--.   -..+-
T Consensus       318 lylvMkrY~~tLr~yl~~~~-------~s~r~~~~~laQlLEav~hL~~hgvAhRDlK-----SDNiL~ElddD~~P~LV  385 (598)
T KOG4158|consen  318 LYLVMKRYRQTLREYLWTRH-------RSYRTGRVILAQLLEAVTHLHKHGVAHRDLK-----SDNILLELDDDEIPQLV  385 (598)
T ss_pred             EEEehhcchhhHHHHHhcCC-------CchHHHHHHHHHHHHHHHHHHHccchhhccc-----ccceEEEecCCCCcEEE
Confidence            56666555566666665433       2223334467899999999 99999999999     999997322   13678


Q ss_pred             EecCCCCC
Q psy17422        486 LCDFGSAS  493 (512)
Q Consensus       486 l~DfGlar  493 (512)
                      ++|||++-
T Consensus       386 vaDFGCcL  393 (598)
T KOG4158|consen  386 VADFGCCL  393 (598)
T ss_pred             Ecccceee
Confidence            89999965

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=96.86  E-value=0.00082  Score=73.99  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=50.6

Q ss_pred             eeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        410 LRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       410 l~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ...+++++.. ++..++.              ....++.++..++.+ |..+|+|+|+|     |+||++.  .+.++++
T Consensus       411 ~~lv~E~~~g~~L~~~l~--------------~~~~~~~~i~~~L~~lH~~giiHrDlk-----p~NILl~--~~~~~li  469 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE--------------GNPELVRKVGEIVAKLHKAGIVHGDLT-----TSNFIVR--DDRLYLI  469 (535)
T ss_pred             CEEEEEecCCCcHHHHHH--------------HHHHHHHHHHHHHHHHHhCCCccCCCC-----hHHEEEE--CCcEEEE
Confidence            4678899874 4444442              234577889999999 99999999999     9999993  4678999


Q ss_pred             cCCCCCC
Q psy17422        488 DFGSASW  494 (512)
Q Consensus       488 DfGlar~  494 (512)
                      |||+++.
T Consensus       470 DFGla~~  476 (535)
T PRK09605        470 DFGLGKY  476 (535)
T ss_pred             eCccccc
Confidence            9999873

>PRK12274 serine/threonine protein kinase; Provisional

Probab=96.86  E-value=0.00042  Score=66.78  Aligned_cols=44  Identities=18%  Similarity=0.093  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhCC-CCCCCChHHH-HhhccccccccccCCCCeEEEecCCCCC
Q psy17422        444 RRAQQLLHQLGQ-PSSAITEAQV-KLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       444 ~~~~qlL~~l~~-h~~~I~hrdI-K~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      .++.|++.++.+ |..+|+|+|+ |     |+||++... +.++++|||+|.
T Consensus        95 ~~~~qi~~~L~~lH~~GIvHrDL~k-----p~NILv~~~-g~i~LIDFG~A~  140 (218)
T PRK12274         95 AYFRAARRLLQQLHRCGVAHNDLAK-----EANWLVQED-GSPAVIDFQLAV  140 (218)
T ss_pred             HHHHHHHHHHHHHHHCcCccCCCCC-----cceEEEcCC-CCEEEEECCCce
Confidence            456788888888 9999999999 8     999999754 789999999987

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.86  E-value=0.0035  Score=53.33  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      .|++.+|+|+|.|.+|..-++.|..+| .++|++..+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch
Confidence            378899999999999999999999999 5799998874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.84  E-value=0.0096  Score=60.34  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=56.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|+..|+++|+|++.+.                -...|++.+++.+.+..+.+.+.... 
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~~~~d-  186 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIVNVYD-  186 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCceeEEec-
Confidence            4567899999999999999999999999999987531                01246777777776666654443221 


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                       +.. .+...+.+.++|++|++.
T Consensus       187 -~~~-~~~~~~~~~~~DilINaT  207 (289)
T PRK12548        187 -LND-TEKLKAEIASSDILVNAT  207 (289)
T ss_pred             -hhh-hhHHHhhhccCCEEEEeC
Confidence             210 011123455679999863

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.77  E-value=0.01  Score=57.59  Aligned_cols=40  Identities=18%  Similarity=0.240  Sum_probs=33.8

Q ss_pred             CCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeece
Q psy17422        166 FFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGF  205 (512)
Q Consensus       166 ~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  205 (512)
                      .+.++++||+++++.+.-..+.+.|++.++++.++.....
T Consensus        82 dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~  121 (223)
T PRK05562         82 FIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKK  121 (223)
T ss_pred             HhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCccc
Confidence            3567899999999999999999999999999887655444

>KOG1163|consensus

Probab=96.70  E-value=0.0024  Score=62.08  Aligned_cols=72  Identities=14%  Similarity=0.090  Sum_probs=53.4

Q ss_pred             EEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEEec
Q psy17422        412 GSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKLCD  488 (512)
Q Consensus       412 ~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl~D  488 (512)
                      .+|..+..+++...++-.   .  .+....|.-++.|++..+.| |.++.+|||||     |.|.+.--+  ...+-++|
T Consensus        88 lVMdLLGPsLEdLfnfC~---R--~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIK-----PdNFLMGlgrh~~kl~LID  157 (341)
T KOG1163|consen   88 LVMDLLGPSLEDLFNFCS---R--RFTMKTVLMLADQMLSRIEYVHLRNFIHRDIK-----PDNFLMGLGRHCNKLYLID  157 (341)
T ss_pred             eeeeccCccHHHHHHHHh---h--hhhHHhHHHHHHHHHHHHHHHHhhccccccCC-----ccceeeccccccceEEEEe
Confidence            456556666655544322   1  25666787888999999999 99999999999     999986433  34677899


Q ss_pred             CCCCC
Q psy17422        489 FGSAS  493 (512)
Q Consensus       489 fGlar  493 (512)
                      ||+|.
T Consensus       158 FGLaK  162 (341)
T KOG1163|consen  158 FGLAK  162 (341)
T ss_pred             ccchh
Confidence            99985

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.69  E-value=0.0097  Score=60.14  Aligned_cols=78  Identities=17%  Similarity=0.200  Sum_probs=54.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||.|..++-.|+..|+.+|+|+|.+                   ..||+.+++.+.+..+...+...  
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~--  183 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGV--  183 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEec--
Confidence            456789999999999999999999999999999754                   23788888777654443222211  


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      ...    ...+.+.++|+||++.
T Consensus       184 ~~~----~~~~~~~~~divINaT  202 (283)
T PRK14027        184 DAR----GIEDVIAAADGVVNAT  202 (283)
T ss_pred             CHh----HHHHHHhhcCEEEEcC
Confidence            111    0112345789999874

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=96.67  E-value=0.0014  Score=60.36  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=48.6

Q ss_pred             cCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        435 AGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       435 a~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ...+...+..++.|++.|+.| |..+      |     |+||++.. ++.+|+  ||+++.....   ...+|+.|+||
T Consensus        12 ~~l~~~~~~~i~~qi~~~L~~lH~~~------k-----p~Nil~~~-~~~~~~--fG~~~~~~~~---~~~g~~~y~aP   73 (176)
T smart00750       12 RPLNEEEIWAVCLQCLRALRELHRQA------K-----SGNILLTW-DGLLKL--DGSVAFKTPE---QSRVDPYFMAP   73 (176)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcC------C-----cccEeEcC-ccceee--ccceEeeccc---cCCCcccccCh
Confidence            347889999999999999999 8877      8     99999864 477888  9998743221   23688999998

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=96.65  E-value=0.00056  Score=66.87  Aligned_cols=93  Identities=6%  Similarity=0.018  Sum_probs=60.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      .+..+.|++|....+.|..  ...+.|.- .    -....+|+++++. +.++..          .+.    ..+.+++.
T Consensus        88 ~l~rL~~~GI~~~~d~~~~--~~~~~~~~-~----~~~~lvmEyi~G~tL~~~~~----------~~~----~~~~~i~~  146 (232)
T PRK10359         88 QTDRVRSEGLASLNDFYLL--AERKTLRY-A----HTYIMLIEYIEGVELNDMPE----------ISE----DVKAKIKA  146 (232)
T ss_pred             HHHHHHHCCCCcceEeeee--cccccccc-c----CCeEEEEEEECCccHHHhhh----------ccH----HHHHHHHH
Confidence            4666788888876655421  11111100 0    1256789999864 333211          122    23457777


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      ++.. |..+|.|+|++     |+|+++..+ + ++++|||..+
T Consensus       147 ~l~~lH~~gi~H~Dik-----p~Nili~~~-g-i~liDfg~~~  182 (232)
T PRK10359        147 SIESLHQHGMVSGDPH-----KGNFIVSKN-G-LRIIDLSGKR  182 (232)
T ss_pred             HHHHHHHcCCccCCCC-----hHHEEEeCC-C-EEEEECCCcc
Confidence            7777 99999999999     999999754 6 9999999876

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.62  E-value=0.017  Score=58.23  Aligned_cols=74  Identities=18%  Similarity=0.308  Sum_probs=55.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      +.++|+|+|+||.+..|+..|...|+.+|+|+...                   ..||+.+++.+.+..+.+....... 
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~-  184 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD-  184 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc-
Confidence            35789999999999999999999999999998654                   4688888888888876333222111 


Q ss_pred             CcccccCCcccccccceEEecC
Q psy17422         91 PQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .        +-..++|++|++.
T Consensus       185 ~--------~~~~~~dliINaT  198 (283)
T COG0169         185 L--------EGLEEADLLINAT  198 (283)
T ss_pred             c--------ccccccCEEEECC
Confidence            1        1111799999974

>PRK14879 serine/threonine protein kinase; Provisional

Probab=96.53  E-value=0.0019  Score=61.48  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             eeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        410 LRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       410 l~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ...+++++.. ++..++.      ..  ..  ....++.++..++.+ |..+++|+|++     |.|+++.  .+.++++
T Consensus        74 ~~lv~e~~~G~~L~~~~~------~~--~~--~~~~i~~~i~~~l~~lH~~~i~H~Dl~-----p~Nil~~--~~~~~li  136 (211)
T PRK14879         74 FIIVMEYIEGEPLKDLIN------SN--GM--EELELSREIGRLVGKLHSAGIIHGDLT-----TSNMILS--GGKIYLI  136 (211)
T ss_pred             CEEEEEEeCCcCHHHHHH------hc--cH--HHHHHHHHHHHHHHHHHhCCcccCCCC-----cccEEEE--CCCEEEE
Confidence            4567888875 4433332      11  11  566778888899988 99999999999     9999997  4778999


Q ss_pred             cCCCCCC
Q psy17422        488 DFGSASW  494 (512)
Q Consensus       488 DfGlar~  494 (512)
                      |||+++.
T Consensus       137 Df~~a~~  143 (211)
T PRK14879        137 DFGLAEF  143 (211)
T ss_pred             ECCcccC
Confidence            9999873

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.47  E-value=0.019  Score=57.91  Aligned_cols=73  Identities=25%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      +..++|+|+|+||+|..+++.|...|+.++++++.+                   ..|++.+++.+....+ +.+   ..
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~  177 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL  177 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence            567889999999999999999999999999999764                   2356666666543321 111   00


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .       ..+.+.++|+||++.
T Consensus       178 ~-------~~~~~~~~DivInaT  193 (278)
T PRK00258        178 E-------LQEELADFDLIINAT  193 (278)
T ss_pred             c-------chhccccCCEEEECC
Confidence            1       124556899999974

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.40  E-value=0.023  Score=51.37  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++..+|+|+|+|++|..+++.|...|...++++|.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            457899999999999999999999987789988754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG1165|consensus

Probab=96.40  E-value=0.0028  Score=64.18  Aligned_cols=89  Identities=12%  Similarity=0.116  Sum_probs=63.0

Q ss_pred             EeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC----CeEEEe
Q psy17422        413 SLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK----LVLKLC  487 (512)
Q Consensus       413 ~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~----~~~Kl~  487 (512)
                      +|+.+..+++.+.++-.   .  .+.+..|.-.+.|++..+.+ |.+..+-||||     |+|.++-+..    ..+-++
T Consensus       102 VidLLGPSLEDLFD~Cg---R--~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIK-----PdNFLIGrp~~k~~n~Ihii  171 (449)
T KOG1165|consen  102 VIDLLGPSLEDLFDLCG---R--RFSVKTVAMIAKQMITRIEYVHEKDLIYRDIK-----PDNFLIGRPGTKDANVIHII  171 (449)
T ss_pred             hhhhhCcCHHHHHHHhc---C--cccHHhHHHHHHHHHHHHHHHHhcceeecccC-----ccceeecCCCCCCCceEEEE
Confidence            45555556555544322   2  37788888888999999999 99999999999     9999986543    367899


Q ss_pred             cCCCCCC--CC-------CCCccCeeeeeeecc
Q psy17422        488 DFGSASW--SH-------ENEITPYLVSRFYRA  511 (512)
Q Consensus       488 DfGlar~--~~-------~~~~t~yv~tr~Yra  511 (512)
                      |||+|..  ++       -+.....-||--||+
T Consensus       172 DFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMS  204 (449)
T KOG1165|consen  172 DFGMAKEYRDPKTKQHIPYREHKSLSGTARYMS  204 (449)
T ss_pred             eccchhhhcCccccccCccccccccccceeeeE
Confidence            9999862  22       112234467777764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.37  E-value=0.017  Score=53.34  Aligned_cols=119  Identities=14%  Similarity=0.162  Sum_probs=71.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQ   92 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~   92 (512)
                      .+|.+||+|..|+.+++||...|. ++++.|..                   +.|    ++.+.+..    ++. ..+  
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~-------------------~~~----~~~~~~~g----~~~-~~s--   50 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS-------------------PEK----AEALAEAG----AEV-ADS--   50 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS-------------------HHH----HHHHHHTT----EEE-ESS--
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc-------------------hhh----hhhhHHhh----hhh-hhh--
Confidence            579999999999999999999998 48888754                   122    23333332    221 123  


Q ss_pred             ccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccC--CCCCCccc
Q psy17422         93 VLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMAN--DPNFFQSF  170 (512)
Q Consensus        93 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~  170 (512)
                           ..++.++.|+|+..-....                                      .+.+++..  .......=
T Consensus        51 -----~~e~~~~~dvvi~~v~~~~--------------------------------------~v~~v~~~~~i~~~l~~g   87 (163)
T PF03446_consen   51 -----PAEAAEQADVVILCVPDDD--------------------------------------AVEAVLFGENILAGLRPG   87 (163)
T ss_dssp             -----HHHHHHHBSEEEE-SSSHH--------------------------------------HHHHHHHCTTHGGGS-TT
T ss_pred             -----hhhHhhcccceEeecccch--------------------------------------hhhhhhhhhHHhhccccc
Confidence                 3477788888887521100                                      00011111  11223344


Q ss_pred             cEEEEc-CCChHHHHHHHHHHHhCCCcEEEEeeece
Q psy17422        171 HMVIST-NLPETTLIELSKTLWSLNIPLLACRSYGF  205 (512)
Q Consensus       171 ~~Vi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  205 (512)
                      ++||++ +.+++...++.+.+.+.++.++++...|-
T Consensus        88 ~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg  123 (163)
T PF03446_consen   88 KIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG  123 (163)
T ss_dssp             EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred             eEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence            566665 57888899999999999999999998874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.26  E-value=0.041  Score=55.78  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||.+..++-.|+..|+++|+|++.+.                -...||+.+++.+....+ ..+.... 
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~-  183 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD-  183 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence            4567899999999999999999999999999997540                023578888877754332 2222211 


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                       +.. .+...+-+.++|+||++.
T Consensus       184 -~~~-~~~l~~~~~~aDivINaT  204 (288)
T PRK12749        184 -LAD-QQAFAEALASADILTNGT  204 (288)
T ss_pred             -hhh-hhhhhhhcccCCEEEECC
Confidence             110 000112345789999973

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.22  E-value=0.012  Score=59.54  Aligned_cols=76  Identities=17%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||.|..++..|...|+++|+|++.+                   ..||+.+++.+....   .+.... 
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~-  179 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLE-  179 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceecc-
Confidence            457789999999999999999999999999999653                   247777777664331   111111 


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      ...    ...+.+.++|+||++.
T Consensus       180 ~~~----~~~~~~~~~DiVInaT  198 (282)
T TIGR01809       180 GDS----GGLAIEKAAEVLVSTV  198 (282)
T ss_pred             chh----hhhhcccCCCEEEECC
Confidence            000    0123446799999973

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=96.10  E-value=0.0026  Score=60.34  Aligned_cols=47  Identities=11%  Similarity=0.099  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        442 IYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       442 v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ...++.+++.++.+ |..+|+|+|+|     |+|+++.. .+.++++|||++..
T Consensus       127 ~~~~~~~i~~~l~~lh~~gi~H~Dl~-----p~Nill~~-~~~~~liDfg~~~~  174 (198)
T cd05144         127 PEEVLDEILEEIVKAYKHGIIHGDLS-----EFNILVDD-DEKIYIIDWPQMVS  174 (198)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCcCCCC-----cccEEEcC-CCcEEEEECCcccc
Confidence            34566778888877 89999999999     99999975 58899999999863

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.02  E-value=0.0028  Score=62.43  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=37.3

Q ss_pred             HHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        446 AQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       446 ~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      +.+++.++.+ |..+|+|+|+|     |.||++... +.++++|||.++.
T Consensus       148 ~~~i~~~l~~lH~~GI~HrDlk-----p~NILv~~~-~~v~LIDfg~~~~  191 (239)
T PRK01723        148 WQAIGQLIARFHDAGVYHADLN-----AHNILLDPD-GKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCC-----chhEEEcCC-CCEEEEECCCccc
Confidence            4678888888 99999999999     999999754 6899999999763

>KOG0603|consensus

Probab=96.00  E-value=0.003  Score=68.64  Aligned_cols=68  Identities=21%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      .+...++.|...++-++.+ |..+|++||+|     ++||++.. .|.+++.|||+++..-...  ..|||--||||
T Consensus        94 f~~~~~~~~~aelaLald~lh~l~iiyrd~k-----~enilld~-~Ghi~~tdfglske~v~~~--~~cgt~eymAp  162 (612)
T KOG0603|consen   94 FDELDVAFYLAELALALDHLHKLGIAYRDYK-----LENVLLLL-EGHIKLTDFGLSKEAVKEK--IACGTYEYRAP  162 (612)
T ss_pred             hHHHHHHHHHHHHHHHHhhcchhHHHHhccc-----ccceeecc-cCccccCCchhhhHhHhhh--hcccchhhhhh
Confidence            5666788888888888888 99999999999     99999975 5999999999988421111  12888889987

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.98  E-value=0.012  Score=61.97  Aligned_cols=74  Identities=23%  Similarity=0.264  Sum_probs=56.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      |..++|+|||+|-.|.-++|+|...|+++|+|+.          |+         ..||..+++.+.     .++.... 
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------RT---------~erA~~La~~~~-----~~~~~l~-  230 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------RT---------LERAEELAKKLG-----AEAVALE-  230 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------CC---------HHHHHHHHHHhC-----CeeecHH-
Confidence            7889999999999999999999999999999963          33         257777777765     2332222 


Q ss_pred             CCcccccCCcccccccceEEecCCCC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTNCPI  115 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~~~~  115 (512)
                             ...+++.++|+||.++.++
T Consensus       231 -------el~~~l~~~DvVissTsa~  249 (414)
T COG0373         231 -------ELLEALAEADVVISSTSAP  249 (414)
T ss_pred             -------HHHHhhhhCCEEEEecCCC
Confidence                   2357889999999986553

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.94  E-value=0.067  Score=52.21  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+++|+|+|-+|..+|++|+..|- .+++||.|
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d   32 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRD   32 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcC
Confidence            368999999999999999999997 48888887

>KOG1033|consensus

Probab=95.78  E-value=0.0032  Score=67.11  Aligned_cols=68  Identities=19%  Similarity=0.267  Sum_probs=53.1

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC---C-----CCCccCeeeeee
Q psy17422        437 RDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS---H-----ENEITPYLVSRF  508 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~---~-----~~~~t~yv~tr~  508 (512)
                      .+.........|+..++.|  ++.+|||+|     |.||.... .+.+||.|||+....   +     ....|..++|+|
T Consensus       356 ~s~s~~~~~~~q~~~~~~y--k~~ihrdlk-----p~nif~~~-d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~  427 (516)
T KOG1033|consen  356 RSLSLMLDIFKQIAPAVEY--KGLIHRDLK-----PSNIFFSD-DDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLL  427 (516)
T ss_pred             cchhHHHHHHHhhccchhh--ccchhhhcc-----cccccccc-chhhhhhhhhheeecccCCcccchhhhhhhcccccc
Confidence            4555666677777777766  889999999     99999864 478999999996522   1     224688999999


Q ss_pred             eccC
Q psy17422        509 YRAP  512 (512)
Q Consensus       509 YraP  512 (512)
                      ||+|
T Consensus       428 YmsP  431 (516)
T KOG1033|consen  428 YMSP  431 (516)
T ss_pred             cCCH
Confidence            9998

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.63  E-value=0.061  Score=58.13  Aligned_cols=104  Identities=10%  Similarity=0.007  Sum_probs=73.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      .|++.+|+|||.|.++..=++.|...|. +||+|-.+.            +             ..+.++...-+++...
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~   62 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE   62 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence            3789999999999999999999999997 699985441            1             1222222222344433


Q ss_pred             CCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCc
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQ  168 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  168 (512)
                      ....                                                                       ++.+.
T Consensus        63 ~~~~-----------------------------------------------------------------------~~dl~   71 (457)
T PRK10637         63 GPFD-----------------------------------------------------------------------ESLLD   71 (457)
T ss_pred             CCCC-----------------------------------------------------------------------hHHhC
Confidence            3322                                                                       23456


Q ss_pred             cccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEE
Q psy17422        169 SFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSI  209 (512)
Q Consensus       169 ~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  209 (512)
                      ++++||+++++.+.-.++.+.|++.++++-.+..-....++
T Consensus        72 ~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~  112 (457)
T PRK10637         72 TCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFI  112 (457)
T ss_pred             CCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEE
Confidence            78999999999999999999999999987766654444443

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=95.61  E-value=0.0084  Score=56.50  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        444 RRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       444 ~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .++.+++.++.+ |..+++|+|++     |.|+++.  .+.++++|||+++.
T Consensus        94 ~~~~~i~~~l~~lH~~gi~H~Dl~-----~~Nil~~--~~~~~liDfg~a~~  138 (199)
T TIGR03724        94 ELLREIGRLVGKLHKAGIVHGDLT-----TSNIIVR--DDKLYLIDFGLGKY  138 (199)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCC-----cceEEEE--CCcEEEEECCCCcC
Confidence            567888899988 99999999999     9999997  47899999999873

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1290|consensus

Probab=95.51  E-value=0.01  Score=62.92  Aligned_cols=61  Identities=11%  Similarity=0.126  Sum_probs=49.0

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccC
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNE  479 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~  479 (512)
                      ++++++.+..++-.+|.   . .......+..|+++++|+|.||.| |. .+|+|-|||     |+|+++..
T Consensus       161 VCMVfEvLGdnLLklI~---~-s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlK-----PENvLl~~  223 (590)
T KOG1290|consen  161 VCMVFEVLGDNLLKLIK---Y-SNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLK-----PENVLLCS  223 (590)
T ss_pred             EEEEehhhhhHHHHHHH---H-hCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCC-----cceeeeec
Confidence            78899988776644443   2 222358899999999999999999 76 699999999     99999853

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.51  E-value=0.05  Score=52.50  Aligned_cols=40  Identities=13%  Similarity=0.029  Sum_probs=34.0

Q ss_pred             CCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeece
Q psy17422        166 FFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGF  205 (512)
Q Consensus       166 ~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  205 (512)
                      .+..+++||.++++...-.++.+.|.+.++|+-.+.--.+
T Consensus        69 ~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~  108 (210)
T COG1648          69 DLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPEL  108 (210)
T ss_pred             hhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc
Confidence            3445899999999999999999999999999887666555

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.32  E-value=0.039  Score=58.14  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=26.1

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         15 ICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        15 VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      |+|+|+|.+|+.+++.|+..+-. ++++.|.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~   32 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRN   32 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECC
Confidence            78999999999999999999854 89999877

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.29  E-value=0.029  Score=59.75  Aligned_cols=74  Identities=11%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      |.+++|+|+|+|+.|..++++|...|+.+|+|+...                   ..||+.+++.+.    ...+..+  
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~~--  233 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHYL--  233 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEecH--
Confidence            678899999999999999999999999999997543                   135555555432    1222111  


Q ss_pred             CCcccccCCcccccccceEEecCCC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTNCP  114 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~~~  114 (512)
                            +...+.+.++|+||++..+
T Consensus       234 ------~~l~~~l~~aDiVI~aT~a  252 (414)
T PRK13940        234 ------SELPQLIKKADIIIAAVNV  252 (414)
T ss_pred             ------HHHHHHhccCCEEEECcCC
Confidence                  1124677889999998544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	512
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		2e-94
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		2e-94
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-94
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		8e-92
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-90
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		5e-13
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		8e-09
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		8e-09
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		8e-09
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		8e-09
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		8e-09
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		9e-09
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		1e-08
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		1e-08
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		1e-08
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		8e-08
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		3e-07
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		5e-07
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		5e-07
3h5n_A	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		1e-04
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		2e-04
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		7e-04
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		8e-04

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/405 (43%), Positives = 250/405 (61%), Gaps = 54/405 (13%)
Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct: 76  NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 135
Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 136 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 195
Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct: 196 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 254
Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +PS                            
Sbjct: 255 LKNENGAPEDEENFEEAIKNVNTALNTTQIPS---------------------------- 286
Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 287 ---------SIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 337
Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V  
Sbjct: 338 DSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR 397
Query: 480 SKLVLKLCDFG----------SASWSHENEITPYL----VSRFYR 510
            + + +  ++G          S+  + +NEI  YL    V RF++
Sbjct: 398 CRSLAE--EYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHK 440

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 230/358 (64%), Gaps = 38/358 (10%)
Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct: 75  NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 134
Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 135 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 194
Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct: 195 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 253
Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +PS                            
Sbjct: 254 LKNENGAPEDEENFEEAIKNVNTALNTTQIPS---------------------------- 285
Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 286 ---------SIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 336
Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V
Sbjct: 337 DSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV 394

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 230/358 (64%), Gaps = 38/358 (10%)
Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct: 73  NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 132
Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 133 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192
Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct: 193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 251
Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K+ENG P  EENFEEA+K VN AL  T +PS                            
Sbjct: 252 LKNENGAPEDEENFEEAIKNVNTALNTTQIPS---------------------------- 283
Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 284 ---------SIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 334
Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V
Sbjct: 335 DSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV 392

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score =  334 bits (856), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 163/358 (45%), Positives = 226/358 (63%), Gaps = 43/358 (12%)
Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct: 75  NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 134
Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 135 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 194
Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct: 195 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 253
Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K                                          P  EENFEEA+K VN 
Sbjct: 254 LK------------------------------------------PEDEENFEEAIKNVNT 271
Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
           AL  T +PSS+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 272 ALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 331
Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V
Sbjct: 332 DSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV 389

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score =  330 bits (845), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/405 (42%), Positives = 246/405 (60%), Gaps = 59/405 (14%)
Query: 120 SFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLP 179
           +FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LP
Sbjct: 73  NFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLP 132
Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSL 239
           E+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L
Sbjct: 133 ESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPEL 192
Query: 240 IQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGI 299
            ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR GI
Sbjct: 193 REHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGI 251
Query: 300 RKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNF 359
            K     P  EENFEEA+K VN AL  T +PS                            
Sbjct: 252 LK-----PEDEENFEEAIKNVNTALNTTQIPS---------------------------- 278
Query: 360 ALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA 419
                    S+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM A
Sbjct: 279 ---------SIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIA 329
Query: 420 DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNE 479
           D+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V  
Sbjct: 330 DSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR 389
Query: 480 SKLVLKLCDFG----------SASWSHENEITPYL----VSRFYR 510
            + + +  ++G          S+  + +NEI  YL    V RF++
Sbjct: 390 CRSLAE--EYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHK 432

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWG   Q  L ++R+ L+   GLG EI K+L+L GV   T++D E+++ +D G  F +  
Sbjct: 25  LWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRT 84
Query: 61  DSIGKSRAEVATQLLLELNP--DCQGDF--VDENPQVLMANDPNFFQSFHMVISTNC 113
            S+G++RAE + +    LNP  D + D   +++ P+       +FF  F  V  T C
Sbjct: 85  GSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPE-------SFFTQFDAVCLTCC 134

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 32  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 91
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 92  KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 131

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 35  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 94
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 95  KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 134

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 465
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 466 KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 505

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 35  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 94
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 95  KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 134

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 35  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 94
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 95  KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 134

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 35  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 94
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 95  KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 134

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 64  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 123
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 124 KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 163

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 1  LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
          + G      ++++ + ++   GLG EI K++VL GV S T+ D E +   DL T FFL  
Sbjct: 16 VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTE 75
Query: 61 DSIGKSRAEVATQLLLELN 79
            IG+ R +V    L ELN
Sbjct: 76 KDIGQKRGDVTRAKLAELN 94

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 45  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 104
Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVI 109
           +AEVA + L +  P+C  + V    ++   ND  F++ FH+++
Sbjct: 105 KAEVAAEFLNDRVPNC--NVVPHFNKIQDFND-TFYRQFHIIV 144

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%)
Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           + G      +  + + +I   GLG EI K++ L GV S T+ D +    +DL + +FL  
Sbjct: 15  VLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTE 74
Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDE 89
           D IG  RA+V    L ELN       VDE
Sbjct: 75  DDIGVPRAKVTVSKLAELNQYVPVSVVDE 103

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 9   ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRA 68
           A+   R+ ++ A G+G E+LK+LVL G     +ID + I   +L   F      +G+S+A
Sbjct: 16  AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 75
Query: 69  EVATQLLLELNPDCQGDFVDENPQVLMAN-DPNFFQSFHMVIST 111
           +VA + +L+  P  + + V  +  ++  + +  FF+ F +V++ 
Sbjct: 76  QVAKESVLQFYP--KANIVAYHDSIMNPDYNVEFFRQFILVMNA 117

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 9   ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRA 68
           A+   R+ ++ A G+G E+LK+LVL G     +ID + I   +L   F      +G+S+A
Sbjct: 14  AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 73
Query: 69  EVATQLLLELNPDCQGDFVDENPQVLMAN-DPNFFQSFHMVIST 111
           +VA + +L+  P  + + V  +  ++  + +  FF+ F +V++ 
Sbjct: 74  QVAKESVLQFYP--KANIVAYHDSIMNPDYNVEFFRQFILVMNA 115

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 9   ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRA 68
           A+   R+ ++ A G+G E+LK+LVL G     +ID + I   +L   F      +G+S+A
Sbjct: 34  AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 93
Query: 69  EVATQLLLELNPDCQGDFVDENPQVLMAN-DPNFFQSFHMVIST 111
           +VA + +L+  P  + + V  +  ++  + +  FF+ F +V++ 
Sbjct: 94  QVAKESVLQFYP--KANIVAYHDSIMNPDYNVEFFRQFILVMNA 135

>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++A++ ++   G+G  +   L   G+G   +ID ++I   +L        D +GK+
Sbjct: 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKN 172
Query: 67  RAEVATQLLLELNPD 81
           + EV  + LL+ N +
Sbjct: 173 KTEVIKRELLKRNSE 187

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++A++ ++   G+G  +   L   G+G   +ID ++I   +L        D +GK+
Sbjct: 110 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKN 169
Query: 67  RAEVATQLLLELNPD 81
           + EV  + LL+ N +
Sbjct: 170 KTEVIKRELLKRNSE 184

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 6  GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK 65
          GQ  L  +++ +I   GLGT     L   GVG+  + D + +   +L        + I +
Sbjct: 22 GQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDR 81
Query: 66 SRAEVATQLLLELNPDCQ 83
           +++V+ Q L +LNPD Q
Sbjct: 82 PKSQVSQQRLTQLNPDIQ 99

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 6   GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK 65
           GQ  L  +++ +I   GLGT     L   GVG+  + D + +   +L        + I +
Sbjct: 24  GQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDR 83
Query: 66  SRAEVATQLLLELNPDCQ 83
            +++V+ Q L +LNPD Q
Sbjct: 84  PKSQVSQQRLTQLNPDIQ 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	512
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	9e-97
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	8e-45
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	1e-41
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	6e-33
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	6e-27
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-19
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	3e-13
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	1e-16
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	1e-04
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	2e-14
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	5e-12
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-09
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	3e-09
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-09
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	5e-09
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	6e-09
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	7e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	7e-09
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-08
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-08
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	3e-08
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	3e-08
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	4e-08
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	6e-08
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	6e-07
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	8e-07
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	5e-05
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	7e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	7e-04
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	7e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	8e-04

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  302 bits (773), Expect = 9e-97
 Identities = 165/381 (43%), Positives = 232/381 (60%), Gaps = 44/381 (11%)

Query: 102 FQSFHMVISTNCPILSLPS-FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM 160
             SF ++           + FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+
Sbjct: 56  IGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLL 115

Query: 161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIE 220
            NDP+FF  F +V++T LPE+T + L+  LW+  IPLL CR+YG +G +R+ I EH +IE
Sbjct: 116 DNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIE 175

Query: 221 SHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQD 280
           SHPDN   DLRLDKP+P L ++  S DLD +E KDH H P++VI+ KYL  W S+ N + 
Sbjct: 176 SHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR- 234

Query: 281 LPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDE 340
           +PK YKEK++ R+LIR GI K E+                                    
Sbjct: 235 IPKTYKEKEDFRDLIRQGILKPED------------------------------------ 258

Query: 341 NGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFV 400
                 EENFEEA+K VN AL  T +PSS+  I ND+ C+N+T ++  FWILA+A+K+FV
Sbjct: 259 ------EENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFV 312

Query: 401 DNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAI 460
             EG GNLP+RG++PDM AD+ +YI LQ +YR++A +DA  +     +LL  +GQ   +I
Sbjct: 313 AKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESI 372

Query: 461 TEAQVKLFCRNASFIHVNESK 481
           +E ++KL C N++F+ V   +
Sbjct: 373 SEKELKLLCSNSAFLRVVRCR 393

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  164 bits (416), Expect = 8e-45
 Identities = 72/118 (61%), Positives = 89/118 (75%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWGDHGQ ALESA +CLINAT  GTEILK+LVLPG+GSFTIIDG ++S +D G NFFL  
Sbjct: 21  LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQR 80

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSL 118
            SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T  P  + 
Sbjct: 81  SSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 138

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  151 bits (383), Expect = 1e-41
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWG   Q  L ++R+ L+   GLG EI K+L+L GV   T++D E+++ +D G  F +  
Sbjct: 25  LWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRT 84

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCP 114
            S+G++RAE + +    LNP        E+   +     +FF  F  V  T C 
Sbjct: 85  GSVGRNRAEASLERAQNLNPMVDVKVDTED---IEKKPESFFTQFDAVCLTCCS 135

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  127 bits (321), Expect = 6e-33
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 7/200 (3%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
           F +   S+G++RAE + +    LNP        E+   +     +FF  F  V  T    
Sbjct: 80  FLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED---IEKKPESFFTQFDAVCLTCCSR 136

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
             ++++ +     +I       +G+ G     + EH  +E           ++    +  
Sbjct: 137 DVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKR 196

Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
             +DS +   ++ K     P    L      W S+     L +   +   L+ L++    
Sbjct: 197 AKLDSSETTMVKKKVVFC-PVKEALEVD---WSSEKAKAALKRTTSDYFLLQVLLKFRTD 252

Query: 301 KDENGIPLSEENFEEAMKAV 320
           K  +    + E   E +  +
Sbjct: 253 KGRDPSSDTYEEDSELLLQI 272

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  114 bits (286), Expect = 6e-27
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           + G      ++++ + ++   GLG EI K++VL GV S T+ D E +   DL T FFL  
Sbjct: 16  VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTE 75

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNC 113
             IG+ R +V    L ELN     + +D        +D      F +V++T+ 
Sbjct: 76  KDIGQKRGDVTRAKLAELNAYVPVNVLDSL------DDVTQLSQFQVVVATDT 122

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 91.8 bits (227), Expect = 1e-19
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGV-----GSFTIIDGEKISEQDLGTN 55
           ++G   Q  + ++++ L+ +  +G E+LK+  L G+     G   + D + I + +L   
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQ 473

Query: 56  FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV----LMANDPNFFQSFHMVIST 111
           F      +GK+++EVA + +  +NPD +G    +  +V        + +F++S   V + 
Sbjct: 474 FLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNA 533

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 71.4 bits (174), Expect = 3e-13
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNL-P 179
           FFL    IG+ R +V    L ELN     + +D        +D      F +V++T+   
Sbjct: 71  FFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSL------DDVTQLSQFQVVVATDTVS 124

Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIE 220
               +++++   S  I  ++  + G  G+  + + +   + 
Sbjct: 125 LEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVL 165

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
            +  Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      
Sbjct: 31  TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 90

Query: 63  IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS 110
           IG+ +AEVA + L +  P+C    V  +   +   +  F++ FH+++ 
Sbjct: 91  IGRPKAEVAAEFLNDRVPNCN---VVPHFNKIQDFNDTFYRQFHIIVC 135

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 128 IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS--TNLPETTLI- 184
           IG+ +AEVA + L +  P+C    V  +   +   +  F++ FH+++    ++     I 
Sbjct: 91  IGRPKAEVAAEFLNDRVPNCN---VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWIN 147

Query: 185 ---------ELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT 217
                    E      S  +PL+   + GF G+ R+ +   T
Sbjct: 148 GMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMT 189

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 74.8 bits (183), Expect = 2e-14
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
                 A+   R+ ++ A G+G E+LK+LVL G     +ID + I   +L   F      
Sbjct: 8   PRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKH 67

Query: 63  IGKSRAEVATQLLLELNPDC-----QGDFVDENPQVLMANDPNFFQSFHMVIS 110
           +G+S+A+VA + +L+  P           ++ +       +  FF+ F +V++
Sbjct: 68  VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD------YNVEFFRQFILVMN 114

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 7   QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
           Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      IG+ 
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 465

Query: 67  RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS 110
           +AEVA + L +  P+C         Q     +  F++ FH+++ 
Sbjct: 466 KAEVAAEFLNDRVPNCNVVPHFNKIQDF---NDTFYRQFHIIVC 506

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 22/77 (28%)

Query: 446 AQQLLHQLGQPSSAITEAQVKLFCRNASFIH----------VNESKLVLKLCDFGSASWS 495
           AQQ+   L           + L     S IH           N  +  +K+ DFGS+   
Sbjct: 163 AQQMCTAL-----------LFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQL 211

Query: 496 HENEITPYLVSRFYRAP 512
            +  I  Y+ SRFYR+P
Sbjct: 212 GQ-RIYQYIQSRFYRSP 227

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 24/77 (31%)

Query: 446 AQQLLHQLGQPSSAITEAQVKLFCRNASFIH----------VNESKLVLKLCDFGSASWS 495
           A  +L  L                     IH            + +  +K+ DFGS+ + 
Sbjct: 206 AHSILQCL-------------DALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYE 252

Query: 496 HENEITPYLVSRFYRAP 512
           H+  +  Y+ SRFYRAP
Sbjct: 253 HQR-VYTYIQSRFYRAP 268

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 20/86 (23%)

Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLC 487
            +      +    +    +KL+     R+ ++IH               ++    VLKL 
Sbjct: 125 YRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLI 184

Query: 488 DFGSASWSHENEI-TPYLVSRFYRAP 512
           DFGSA      E    Y+ SR+YRAP
Sbjct: 185 DFGSAKILIAGEPNVSYICSRYYRAP 210

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 20/86 (23%)

Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLC 487
            ++     +    +    VKL+     R+ ++IH               ++    VLKLC
Sbjct: 140 YRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLC 199

Query: 488 DFGSASWSHENEI-TPYLVSRFYRAP 512
           DFGSA      E    Y+ SR+YRAP
Sbjct: 200 DFGSAKQLVRGEPNVSYICSRYYRAP 225

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 27/87 (31%)

Query: 440 DVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIH--------------VNESKLVLK 485
             + + ++QLL  L                R    IH                E+ + +K
Sbjct: 131 IYVKQISKQLLLGL------------DYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIK 178

Query: 486 LCDFGSASWSHENEITPYLVSRFYRAP 512
           + D G+A W  E   T  + +R YR+P
Sbjct: 179 IADLGNACWYDE-HYTNSIQTREYRSP 204

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 20/86 (23%)

Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLC 487
            ++L    +   +I    + ++     R   FIH               VN     LKLC
Sbjct: 125 HKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLC 184

Query: 488 DFGSASWSHENEI-TPYLVSRFYRAP 512
           DFGSA     +E    Y+ SRFYRAP
Sbjct: 185 DFGSAKKLIPSEPSVAYICSRFYRAP 210

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 22/88 (25%)

Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH-----------------VNESKLVLK 485
            +      +   A     +K+F     R+   +H                 VNE+   LK
Sbjct: 113 HRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLK 172

Query: 486 LCDFGSASWSHENEI-TPYLVSRFYRAP 512
           LCDFGSA     +E    Y+ SR+YRAP
Sbjct: 173 LCDFGSAKKLSPSEPNVAYICSRYYRAP 200

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 17/78 (21%), Positives = 35/78 (44%)

Query: 6   GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK 65
               +++ ++ L+ A  LG  + ++L+  GV   T +D   +S  +       + +  GK
Sbjct: 321 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGK 380

Query: 66  SRAEVATQLLLELNPDCQ 83
            +AE+A   L  + P   
Sbjct: 381 PKAELAAASLKRIFPLMD 398

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
           +KL DFG A++  +      + +R YRAP
Sbjct: 201 IKLIDFGCATFKSDY-HGSIINTRQYRAP 228

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
           +++ DFGSA++ HE+  T  + +R YR P
Sbjct: 181 IRVADFGSATFDHEH-HTTIVATRHYRPP 208

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
           +K+ DFGSA++  E+  T  + +R YRAP
Sbjct: 176 IKVVDFGSATYDDEHHST-LVSTRHYRAP 203

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Length = 353

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 2   WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFL--- 58
                Q  L++A++ ++   G+G  +   L   G+G   +ID ++I      TN  L   
Sbjct: 108 NPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIEN----TN--LTRQ 161

Query: 59  ---DVDSIGKSRAEVATQLLLELNPDCQ 83
                D +GK++ EV  + LL+ N +  
Sbjct: 162 VLFSEDDVGKNKTEVIKRELLKRNSEIS 189

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 3  GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFL---- 58
             GQ  L  +++ +I   GLGT     L   GVG+  + D + +      +N  L    
Sbjct: 19 ALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL----SN--LQRQI 72

Query: 59 --DVDSIGKSRAEVATQLLLELNPDCQ 83
              + I + +++V+ Q L +LNPD Q
Sbjct: 73 LFTTEDIDRPKSQVSQQRLTQLNPDIQ 99

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDL------GTNF 56
              GQ AL+ +R+ ++   GLG    + L   GVG+ T++D + +S  +L          
Sbjct: 22  DFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSD-- 79

Query: 57  FLDVDSIGKSRAEVATQLLLELNPDCQ 83
                ++G+ + E A   L  +NP   
Sbjct: 80  ----ATVGQPKVESARDALTRINPHIA 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 75/537 (13%), Positives = 163/537 (30%), Gaps = 146/537 (27%)

Query: 81  DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLL 140
           DC+ D  D    +L   + +     H+++S +  +      F  + S  +   +   + +
Sbjct: 34  DCK-DVQDMPKSILSKEEID-----HIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 141 LELN---------PDCQG------DFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIE 185
           L +N          + +        ++++  +  + ND   F  +++           ++
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSR-----LQPYLK 139

Query: 186 LSKTLWSL----NIPL----------LA---CRSYGFIG---------SIRLQISEHTII 219
           L + L  L    N+ +          +A   C SY             +++   S  T++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 220 ESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDH-----MHIPY---LVIL--YKYL 269
           E          ++D  W S   +  +I L    ++          PY   L++L   +  
Sbjct: 200 EML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 270 KLWQSQNN-------TQDLP-----KNYKEKQNLRELIRSGIRKDE------NGIPLSEE 311
           K W + N        T+                  +     +  DE        +    +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 312 NFEEAMKAVN---FALIPTTVPSSVARIR--------KDENGIPLSEENFEEA-MKA--V 357
           +    +   N    ++I  ++   +A           K    I  S    E A  +    
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 358 NFALIP--TTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLP 415
             ++ P    +P+ + S++  +       KS+   ++ K  K  +  +         S+P
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFD-----VIKSDVMVVVNKLHKYSLVEK--QPKESTISIP 429

Query: 416 DMTADTTRYIA-LQQL-------YRDQAGRDADV---------IYRRAQQLLHQLGQPSS 458
            +  +    +     L       Y      D+D           Y     + H L     
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHL----K 482

Query: 459 AITEAQ-VKLFCR---NASFIHVNESKLVLKLCDFGSASWSHENEITPYLVS-RFYR 510
            I   + + LF     +  F+         K+    +A W+    I   L   +FY+
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQ-------KIRHDSTA-WNASGSILNTLQQLKFYK 531

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 6   GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISE-----QDLGTNFFLDV 60
               +++ ++ L+ A  LG  + ++L+  GV   T +D   +S      Q L        
Sbjct: 28  NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN-----F 82

Query: 61  DSIGKSRAEVATQLLLELNPDCQ 83
           +  GK +AE+A   L  + P   
Sbjct: 83  EDCGKPKAELAAASLKRIFPLMD 105

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 6   GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNF---FLDVDS 62
               + +  + ++   G+G+   + L   G+G   + D +K+       N    F     
Sbjct: 30  DYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVEL----ANMNRLFFQPHQ 85

Query: 63  IGKSRAEVATQLLLELNPDCQ 83
            G S+ + A   L  +NPD  
Sbjct: 86  AGLSKVQAAEHTLRNINPDVL 106

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 23/83 (27%)

Query: 450 LHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLCDFG 490
             QL Q    +T+  ++ +     +   + H               ++     L+L D+G
Sbjct: 120 FKQLYQT---LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG 176

Query: 491 SASWSHEN-EITPYLVSRFYRAP 512
            A + H   E    + SR+++ P
Sbjct: 177 LAEFYHPGQEYNVRVASRYFKGP 199

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 475 IHVNESKLVLKLCDFGSA-----SWSHENEITPYLVSRFYRAP 512
           + +N   LVLK+ DFG A      +SH+  ++  LV+++YR+P
Sbjct: 151 LFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSP 193

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 484 LKLCDFGSA-SWSHENEITPYLVSRFYRAP 512
           LK+ DFG A +      +TPY+V+R+YRAP
Sbjct: 203 LKILDFGLARTAGTSFMMTPYVVTRYYRAP 232

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 484 LKLCDFGSA-SWSHENEITPYLVSRFYRAP 512
           + +CDF  A   + +   T Y+  R+YRAP
Sbjct: 173 ITICDFNLAREDTADANKTHYVTHRWYRAP 202

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
           LK+ DFG A    ++E+T Y+V+R+YRAP
Sbjct: 167 LKILDFGLAR-QADSEMTGYVVTRWYRAP 194

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 484 LKLCDFGSA-SWSHENEITPYLVSRFYRAP 512
           LK+ DFG A +      +TPY+V+R+YRAP
Sbjct: 166 LKILDFGLARTAGTSFMMTPYVVTRYYRAP 195

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
           LK+ DFG A    + E+T Y+V+R+YRAP
Sbjct: 165 LKILDFGLAR-HADAEMTGYVVTRWYRAP 192

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
           LK+ DFG A     +E+T Y+ +R+YRAP
Sbjct: 171 LKILDFGLAR-HTADEMTGYVATRWYRAP 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	512
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	99.96
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	99.96
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.96
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	99.96
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	99.95
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	99.95
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	99.94
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	99.94
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	99.93
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.93
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.93
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.74
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.72
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.72
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.72
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.71
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.7
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.69
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.69
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.66
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.64
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.6
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.59
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.56
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.54
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.52
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.5
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.5
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.49
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.49
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.44
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.43
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.43
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.42
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.42
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.4
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.4
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.39
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.37
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.36
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.34
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.33
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.33
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.32
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.32
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.31
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.3
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.3
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.3
3niz_A	311	Rhodanese family protein; structural genomics, str	99.3
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.29
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.29
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.28
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.27
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.27
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.27
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.27
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.26
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.26
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.26
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.26
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.26
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.26
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.25
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.25
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.25
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.25
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.24
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.23
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.23
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.23
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.23
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.23
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.22
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.22
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.22
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.22
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.22
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.22
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.22
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.21
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.21
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.21
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.21
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.21
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.21
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.2
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.2
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.2
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.2
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.19
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.19
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.18
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.18
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.18
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.18
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.18
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.17
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.17
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.17
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.17
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.17
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.16
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.16
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.16
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.16
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.16
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.14
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.14
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.14
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.14
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.14
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.11
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.1
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.1
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.1
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.09
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.09
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.09
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.09
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.09
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.08
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.08
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.07
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.06
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.05
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.05
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.04
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.04
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.04
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.04
3bhy_A	283	Death-associated protein kinase 3; death associate	99.03
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.03
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.03
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.03
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.03
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.02
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.02
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.02
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.02
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.01
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.01
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.01
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.01
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	98.99
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	98.99
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	98.99
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	98.99
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.99
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	98.98
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.98
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.98
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	98.98
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	98.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	98.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	98.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	98.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	98.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	98.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	98.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	98.95
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.95
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.95
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.95
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	98.95
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	98.95
2a19_B	284	Interferon-induced, double-stranded RNA-activated	98.94
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	98.94
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	98.94
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	98.94
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	98.94
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	98.94
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	98.94
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	98.93
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	98.93
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.93
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	98.93
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	98.93
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	98.92
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.92
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	98.92
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	98.92
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	98.91
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.91
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	98.91
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	98.91
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.91
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	98.9
3pls_A	298	Macrophage-stimulating protein receptor; protein k	98.9
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.9
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	98.89
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	98.89
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	98.89
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	98.89
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	98.88
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	98.88
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.88
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	98.87
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.86
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.86
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.86
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.86
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.86
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.85
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.85
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	98.85
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.85
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	98.84
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	98.84
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.84
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.83
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.83
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.83
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.83
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.83
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.82
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	98.82
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.81
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.8
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	98.8
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.8
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	98.8
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	98.79
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	98.79
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	98.78
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.76
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	98.76
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.73
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	98.71
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.71
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	98.7
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.68
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.66
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.62
3uqc_A	286	Probable conserved transmembrane protein; structur	98.47
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	97.96
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.49
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.18
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.98
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	96.94
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.85
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.72
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.62
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.6
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.55
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.46
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.34
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.3
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.04
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.04
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.93
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.91
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.56
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.53
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.29
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.22
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.21
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.1
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.9
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.87
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	94.83
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.8
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.77
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	94.73
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.71
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.55
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.46
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.29
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	94.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.14
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.8
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.79
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	93.76
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.69
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.65
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.54
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.45
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	93.45
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.43
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.42
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.38
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.96
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.85
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.65
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.59
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.56
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.53
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	92.52
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	92.48
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.41
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.37
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.29
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.19
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.19
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.17
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.09
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.98
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.75
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.73
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.72
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.58
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.53
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.47
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	91.44
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	91.41
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.4
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	91.39
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	91.38
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.28
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	91.28
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	91.2
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.01
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.0
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.97
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.82
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.71
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	90.46
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	90.2
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.19
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.12
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.85
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.76
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	89.26
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.24
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.93
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	88.87
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	88.67
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	88.64
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.41
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	88.4
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.25
1lnq_A	336	MTHK channels, potassium channel related protein;	88.17
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	88.06
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	87.95
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.91
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	87.61
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	87.56
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	87.52
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	87.52
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.4
2cul_A	232	Glucose-inhibited division protein A-related PROT	87.27
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	87.12
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.95
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	86.92
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	86.91
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	86.9
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.73
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.63
4hb9_A	412	Similarities with probable monooxygenase; flavin,	86.37
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	86.28
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	86.24
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.1
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	85.96
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	85.87
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	85.72
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	85.54
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	85.52
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	85.47
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	85.46
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	85.42
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	85.37
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	85.37
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.36
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	85.33
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	85.32
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	85.11
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	85.08
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	84.85
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	84.78
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	84.56
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	84.53
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	84.48
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.39
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	84.38
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	84.38
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	84.15
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	84.08
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	84.03
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	84.02
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	83.98
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	83.82
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	83.8
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	83.75
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.73
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	83.71
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	83.67
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	83.65
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	83.6
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	83.42
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	83.27
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	82.99
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	82.94
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	82.93
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	82.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	82.79
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	82.77
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	82.74
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	82.68
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	82.59
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	82.51
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	82.45
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	82.23
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	82.22
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	82.18
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	82.14
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	81.96
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	81.95
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	81.8
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	81.78
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	81.69
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	81.56
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	81.4
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	81.21
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	81.16
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	81.07
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	81.06
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	81.05
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	80.99
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	80.9
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	80.88
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	80.85
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	80.84
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	80.76
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	80.58
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	80.51
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	80.51
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	80.43
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	80.34
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	80.32
3dme_A	369	Conserved exported protein; structural genomics, P	80.31
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	80.25
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	80.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	80.16
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	80.16
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	80.07
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	80.06

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=2.5e-69  Score=582.87  Aligned_cols=375  Identities=54%  Similarity=0.967  Sum_probs=343.7

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.++|++|++++|+|+|+||+|||++|||+++|||+|||+|+|+|+.+||+||||++.+|||++||++++++|+++||
T Consensus        21 l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp  100 (531)
T 1tt5_A           21 LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS  100 (531)
T ss_dssp             HHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCT
T ss_pred             hcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|++.++...+.                                                                 .++
T Consensus       101 ~v~v~~~~~~~~-----------------------------------------------------------------~~~  115 (531)
T 1tt5_A          101 DVSGSFVEESPE-----------------------------------------------------------------NLL  115 (531)
T ss_dssp             TSBCCEESSCHH-----------------------------------------------------------------HHH
T ss_pred             CCeEEEeCCCcc-----------------------------------------------------------------hhh
Confidence            999998877665                                                                 222


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCCCCCCCccccChhhHH
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI  240 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~~~~dlr~~~p~p~L~  240 (512)
                      .+..+++++||+||+|.++..++..++++|++.++|+|.+++.|+.|++++++|+|++++++|+...+++|+..|||++.
T Consensus       116 ~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~p~~~~~d~~~~~~~~~lr~~~p~P~~~  195 (531)
T 1tt5_A          116 DNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELR  195 (531)
T ss_dssp             HSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECSCEEESCCCCSSCCCCCCSSSCCHHHH
T ss_pred             hhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEcCCceeccCCCCCCCCcccccCCCCCch
Confidence            34567788999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             HHHhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCCccHHHHHHHh
Q psy17422        241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAV  320 (512)
Q Consensus       241 ~~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~~~~~i~~~~r~~~~~~~~~e~nf~ea~~~~  320 (512)
                      +++.++|++.++...|+|+|+++++++|++.||..|+|. +|++++|+.+|++++.+++|+.     .+|+||       
T Consensus       196 ~~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~~~g~-~P~~~~~~~~f~~~i~~~~~~~-----~~e~N~-------  262 (531)
T 1tt5_A          196 EHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGILKP-----EDEENF-------  262 (531)
T ss_dssp             HHHHTCC-------CGGGSCHHHHHHHHHHHHTTTTCCC-CCCHHHHHHHHHHHHHHTTSSC-----TTHHHH-------
T ss_pred             hhhhccCcccccCCCcCCchHHHHHHHHHHHHHHhcCCC-CCCchhhHHHHHHHHHhhcccC-----ccccch-------
Confidence            999999999999999999999999999999999999887 8999999999999999988885     268999       


Q ss_pred             hhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhh
Q psy17422        321 NFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       321 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~  400 (512)
                                                    +||++.+++++++..+|++++++|++.+|.|+...+..||++++|+|+|+
T Consensus       263 ------------------------------~Ea~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~s~~Fwil~~alk~F~  312 (531)
T 1tt5_A          263 ------------------------------EEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFV  312 (531)
T ss_dssp             ------------------------------HHHHHHHHHHSCCCCCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             ------------------------------HHHHHHHHhhcCCccCcHHHHHHhcccccccccCCCchHHHHHHHHHHHH
Confidence                                          67777777777778899999999998888888877789999999999999


Q ss_pred             hcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCCCCCCCChHHHHhhccccccccccCC
Q psy17422        401 DNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      ++++.|.+|+.+.+|||++++..|++||++|++|+..|...|..++++++..++.....|.+++|+.||||+++|.++++
T Consensus       313 ~~~~~g~lPl~g~ipDm~s~t~~Y~~lq~iy~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~  392 (531)
T 1tt5_A          313 AKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRC  392 (531)
T ss_dssp             HTTTTTSCCCCCCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECC
T ss_pred             HhcCCCCCCCCCccCccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHhchhhhhcccc
Confidence            99888899999999999999999999999999999999999999999999999887788999999999999999999987


Q ss_pred             CCe
Q psy17422        481 KLV  483 (512)
Q Consensus       481 ~~~  483 (512)
                      +..
T Consensus       393 ~~l  395 (531)
T 1tt5_A          393 RSL  395 (531)
T ss_dssp             CCH
T ss_pred             cch
Confidence            653

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=2.3e-37  Score=318.15  Aligned_cols=229  Identities=21%  Similarity=0.364  Sum_probs=192.9

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.++|++|++++|+|+|+||+|+|++|||+++|||+|||+|+|.|+.+||+||||++.+|+|++||++++++|+++||
T Consensus        25 l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp  104 (346)
T 1y8q_A           25 LWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNP  104 (346)
T ss_dssp             HHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCT
T ss_pred             hhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++++...+.                                                                    
T Consensus       105 ~v~v~~~~~~~~--------------------------------------------------------------------  116 (346)
T 1y8q_A          105 MVDVKVDTEDIE--------------------------------------------------------------------  116 (346)
T ss_dssp             TSEEEEECSCGG--------------------------------------------------------------------
T ss_pred             CeEEEEEecccC--------------------------------------------------------------------
Confidence            999999887665                                                                    


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCC-CC------------
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDN-TN------------  227 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~-~~------------  227 (512)
                      .+..+++++||+||+|.++.+.+..++++|++.++|+|.+++.|+.|++++++++|.+++++++. ..            
T Consensus       117 ~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~  196 (346)
T 1y8q_A          117 KKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKR  196 (346)
T ss_dssp             GCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEEEECSEEEEEEECC-----------------
T ss_pred             cchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEEEecCCCCEEEcCCCCcCCCcccccCCCCCc
Confidence            01235677899999999999999999999999999999999999999999999999888776552 00            


Q ss_pred             --------CCCccccChhhHHHHHhhcCCCcccc-ccccCccHHHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHh
Q psy17422        228 --------PDLRLDKPWPSLIQYVDSIDLDSLEV-KDHMHIPYLVILYKYLKLWQSQNNTQDLP-KNYKEKQNLRELIRS  297 (512)
Q Consensus       228 --------~dlr~~~p~p~L~~~~~~~d~~~l~~-~~~~~ip~~~~l~~~l~~~~~~~~~~~~p-~~~~e~~~~~~~i~~  297 (512)
                              .-......|++|++.+. .++...+- ....+.|..+++++||.+|++.|++.|.| .+.++...|.++..+
T Consensus       197 ~~~d~~~~~~~~~~~~f~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~  275 (346)
T 1y8q_A          197 AKLDSSETTMVKKKVVFCPVKEALE-VDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRND  275 (346)
T ss_dssp             ------CCCEEEEEEECCCHHHHTS-CCSCSHHHHHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEeceeeccCHHHHhc-CCchhhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence                    00123456999999875 56662111 22568899999999999999999876432 456667778777665


Q ss_pred             c
Q psy17422        298 G  298 (512)
Q Consensus       298 ~  298 (512)
                      .
T Consensus       276 ~  276 (346)
T 1y8q_A          276 V  276 (346)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=311.97  Aligned_cols=276  Identities=19%  Similarity=0.292  Sum_probs=207.8

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.+||++|++++|+|+|+||+|+|+||||+++|||+|||+|+|.|+.+||+||||++.+|+|++||++++++|+++||
T Consensus        16 l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP   95 (1015)
T 3cmm_A           16 VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNA   95 (1015)
T ss_dssp             HSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCT
T ss_pred             hcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++++...++                                                                    
T Consensus        96 ~v~v~~~~~~l~--------------------------------------------------------------------  107 (1015)
T 3cmm_A           96 YVPVNVLDSLDD--------------------------------------------------------------------  107 (1015)
T ss_dssp             TSCEEECCCCCC--------------------------------------------------------------------
T ss_pred             CCeEEEecCCCC--------------------------------------------------------------------
Confidence            999998776554                                                                    


Q ss_pred             cCCCCCCccccEEEEcCC-ChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC-ceeecCCCCCCC---------C-
Q psy17422        161 ANDPNFFQSFHMVISTNL-PETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE-HTIIESHPDNTN---------P-  228 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~~~~p~~~~---------~-  228 (512)
                         .+++.+||+||+|.+ +...+..++++|++.++|+|.+++.|+.|++++++++ |.+++++++.+.         | 
T Consensus       108 ---~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~d~~~~~~c~~~~~~~p~~~~i~~i~~p~  184 (1015)
T 3cmm_A          108 ---VTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEPDG  184 (1015)
T ss_dssp             ---STTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEECCSCEEESBSSCCCCCEEEEEEECTTC
T ss_pred             ---HHHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEecCCCceEEeeCCCCCCccccccCCCCCc
Confidence               246788999999999 9999999999999999999999999999999999887 566665543210         0 


Q ss_pred             ------------------------------------------------C-----------------CccccChhhHHHHH
Q psy17422        229 ------------------------------------------------D-----------------LRLDKPWPSLIQYV  243 (512)
Q Consensus       229 ------------------------------------------------d-----------------lr~~~p~p~L~~~~  243 (512)
                                                                      |                 ......|++|.+++
T Consensus       185 ~v~~l~~~~h~~~~gd~v~F~ev~gm~elN~~e~~~i~~~~p~~f~I~Dts~~~~yv~~g~~~qvk~p~~i~f~~l~~~l  264 (1015)
T 3cmm_A          185 TVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQL  264 (1015)
T ss_dssp             EEEESTTCCCCCCTTCEEEEECCBTSGGGGSSCCEECEEEETTEEECSCCTTTCCCCBCCEEEECCCCEEECCCCHHHHH
T ss_pred             eeEeeecccccCCCCCeEEEEeeccchhhcCccceeeEEcCCceeEecccchhhhhhcCceeEEecCCcccCHHHHHHHH
Confidence                                                            0                 01124788999998


Q ss_pred             hhcCCCccccccccCccHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHHhccccCCCC----CCCCCccHHHHHH
Q psy17422        244 DSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQN-NTQDLPKNYKEKQNLRELIRSGIRKDENG----IPLSEENFEEAMK  318 (512)
Q Consensus       244 ~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~-~~~~~p~~~~e~~~~~~~i~~~~r~~~~~----~~~~e~nf~ea~~  318 (512)
                      ..-..-.-+.....+.+..++.++||.+|++.| ++.|-|.+.++..+|.++..+.......+    ...+++-+.|-.|
T Consensus       265 ~~p~~l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~~~~~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~  344 (1015)
T 3cmm_A          265 SNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSY  344 (1015)
T ss_dssp             HSCCBCCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHH
T ss_pred             cChHHHHHHHhccCcchHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHH
Confidence            742110001111345677888899999999999 66544557788888888776543321000    1123444434444


Q ss_pred             HhhhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhc
Q psy17422        319 AVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFAL  361 (512)
Q Consensus       319 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~  361 (512)
                      +++--+.      -|+.++..-.+        +|+||.+..-+
T Consensus       345 ~~~~el~------pvaA~iGGivA--------QEVIKaiT~kf  373 (1015)
T 3cmm_A          345 QARGDIP------GVVAFFGGLVA--------QEVLKACSGKF  373 (1015)
T ss_dssp             TTTCCCH------HHHHHHHHHHH--------HHHHHHHHCBS
T ss_pred             hcCcccC------cHHHHhcchHH--------HHHHHHhccCC
Confidence            4443232      24444444444        68888775544

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=99.96  E-value=5.7e-30  Score=269.62  Aligned_cols=156  Identities=26%  Similarity=0.428  Sum_probs=137.8

Q ss_pred             CCHHHHH-HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          2 WGDHGQA-ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         2 wG~~~Q~-~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      .|.+.|+ .|++++|+|+|+||+||+++|+|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||++++++|+++||
T Consensus        29 ~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp  108 (434)
T 1tt5_B           29 PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP  108 (434)
T ss_dssp             CCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred             cCHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCC
Confidence            3555565 569999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +++++++...+.                                                                    
T Consensus       109 ~v~v~~~~~~i~--------------------------------------------------------------------  120 (434)
T 1tt5_B          109 NCNVVPHFNKIQ--------------------------------------------------------------------  120 (434)
T ss_dssp             TCCCEEEESCGG--------------------------------------------------------------------
T ss_pred             CCEEEEEecccc--------------------------------------------------------------------
Confidence            999999887765                                                                    


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhC------------CCcEEEEeeeceeEEEEEEeCC-----ceeecCCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSL------------NIPLLACRSYGFIGSIRLQISE-----HTIIESHP  223 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~------------~ip~i~~~~~G~~G~v~~~~~~-----~~~~~~~p  223 (512)
                      ..+.+++++||+||+|.|+.+++..+++.|...            ++|+|++++.|+.|++++++|+     +|+++.+|
T Consensus       121 ~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p  200 (434)
T 1tt5_B          121 DFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYP  200 (434)
T ss_dssp             GBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSC
T ss_pred             hhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEEEECCCCCCCcccccCCCC
Confidence            012346788999999999999999999999874            9999999999999999999887     44555555


Q ss_pred             CC
Q psy17422        224 DN  225 (512)
Q Consensus       224 ~~  225 (512)
                      ..
T Consensus       201 ~~  202 (434)
T 1tt5_B          201 PQ  202 (434)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=99.96  E-value=1.9e-29  Score=274.65  Aligned_cols=149  Identities=21%  Similarity=0.392  Sum_probs=139.3

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +||.++|++|++++|+|+|+||+||+++|||+++|||+|+|+|+|.|+.+||+||||++.+|||++||++++++|+++||
T Consensus         6 l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP   85 (640)
T 1y8q_B            6 GLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYP   85 (640)
T ss_dssp             CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCT
T ss_pred             hcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++++...+.+                                                                .  
T Consensus        86 ~v~V~a~~~~i~~----------------------------------------------------------------~--   99 (640)
T 1y8q_B           86 KANIVAYHDSIMN----------------------------------------------------------------P--   99 (640)
T ss_dssp             TCEEEEEESCTTS----------------------------------------------------------------T--
T ss_pred             CCeEEEEecccch----------------------------------------------------------------h--
Confidence            9999999887750                                                                0  


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                      ....+++.+||+||+|.|+..++..++++|+++++|+|.+++.|+.|++++..|+
T Consensus       100 ~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~  154 (640)
T 1y8q_B          100 DYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKG  154 (640)
T ss_dssp             TSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTT
T ss_pred             hhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCC
Confidence            0123567889999999999999999999999999999999999999999999987

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.8e-29  Score=284.36  Aligned_cols=175  Identities=20%  Similarity=0.331  Sum_probs=151.8

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCC-----CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHH
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGV-----GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLL   75 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv-----~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l   75 (512)
                      |||.++|++|++++|+|||+||+|||++|||+++||     |+|||+|.|+|+.+||+|||+|+.+|||++||+++++++
T Consensus       414 l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l  493 (1015)
T 3cmm_A          414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAV  493 (1015)
T ss_dssp             HHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHH
T ss_pred             hcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHH
Confidence            599999999999999999999999999999999999     999999999999999999999999999999999999999


Q ss_pred             HhhCCCC--eEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCC
Q psy17422         76 LELNPDC--QGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD  153 (512)
Q Consensus        76 ~~lnp~v--~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (512)
                      +++||++  +++++...+.+..+                                                         
T Consensus       494 ~~iNP~v~~~v~~~~~~i~~~~~---------------------------------------------------------  516 (1015)
T 3cmm_A          494 CAMNPDLKGKINAKIDKVGPETE---------------------------------------------------------  516 (1015)
T ss_dssp             HHHCGGGTTTEEEECCCCSGGGT---------------------------------------------------------
T ss_pred             HHHCCCCcceEEEEecccCchhh---------------------------------------------------------
Confidence            9999999  99999888761000                                                         


Q ss_pred             CcchhhccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCC--ceeecCCCCCCCCCCc
Q psy17422        154 ENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISE--HTIIESHPDNTNPDLR  231 (512)
Q Consensus       154 e~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~--~~~~~~~p~~~~~dlr  231 (512)
                          .  ..+.++++++|+||+|.|+.+++..++++|+..++|+|.+++.|+.|++++.+|.  +|+ .+.++.+    .
T Consensus       517 ----~--~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~v~~p~~t~cy-~c~~dp~----~  585 (1015)
T 3cmm_A          517 ----E--IFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESY-SSSRDPP----E  585 (1015)
T ss_dssp             ----T--TSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTBCCG-GGSCCCC----C
T ss_pred             ----h--hccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCccccceEEEeCCCCCcc-CCCCCCC----C
Confidence                0  0123567899999999999999999999999999999999999999999999887  344 3333321    2


Q ss_pred             cccChhhHHHHH
Q psy17422        232 LDKPWPSLIQYV  243 (512)
Q Consensus       232 ~~~p~p~L~~~~  243 (512)
                      ...|.|+|.++.
T Consensus       586 ~~~P~Ctl~~~P  597 (1015)
T 3cmm_A          586 KSIPLCTLRSFP  597 (1015)
T ss_dssp             CCCCHHHHHTCC
T ss_pred             CCCCcccccCCC
Confidence            567888877644

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=99.96  E-value=1.6e-28  Score=241.80  Aligned_cols=146  Identities=23%  Similarity=0.334  Sum_probs=134.8

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||||++.+|+|++||++++++|+++||+
T Consensus        18 ~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   97 (251)
T 1zud_1           18 IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD   97 (251)
T ss_dssp             THHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+.+                                                                   .
T Consensus        98 ~~v~~~~~~~~~-------------------------------------------------------------------~  110 (251)
T 1zud_1           98 IQLTALQQRLTG-------------------------------------------------------------------E  110 (251)
T ss_dssp             SEEEEECSCCCH-------------------------------------------------------------------H
T ss_pred             CEEEEEeccCCH-------------------------------------------------------------------H
Confidence            999988776640                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQIS  214 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  214 (512)
                      +..++++++|+||.|+++..++..+++.|++.++|+|++++.|+.|++++..+
T Consensus       111 ~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~~~p  163 (251)
T 1zud_1          111 ALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP  163 (251)
T ss_dssp             HHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEEECT
T ss_pred             HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEEEcc
Confidence            11234678899999999999999999999999999999999999999988654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=99.95  E-value=3.1e-28  Score=243.46  Aligned_cols=159  Identities=16%  Similarity=0.234  Sum_probs=116.7

Q ss_pred             CCCH-HHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC
Q psy17422          1 LWGD-HGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN   79 (512)
Q Consensus         1 LwG~-~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln   79 (512)
                      .||. ++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||| ++.+|+|++||++++++|+++|
T Consensus        24 ~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~iN  102 (292)
T 3h8v_A           24 RMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNIN  102 (292)
T ss_dssp             --------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHHHHHHHHHHC
T ss_pred             ccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHHHHHHHHhhC
Confidence            4998 9999999999999999999999999999999999999999999999999997 5889999999999999999999


Q ss_pred             CCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhh
Q psy17422         80 PDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVL  159 (512)
Q Consensus        80 p~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  159 (512)
                      |+|+++.+...++.. ++.++|+.                                      .++               
T Consensus       103 P~v~v~~~~~~l~~~-~~~~~~~~--------------------------------------~~~---------------  128 (292)
T 3h8v_A          103 PDVLFEVHNYNITTV-ENFQHFMD--------------------------------------RIS---------------  128 (292)
T ss_dssp             TTSEEEEECCCTTSH-HHHHHHHH--------------------------------------HHH---------------
T ss_pred             CCcEEEEecccCCcH-HHHHHHhh--------------------------------------hhc---------------
Confidence            999999998877510 00000000                                      000               


Q ss_pred             ccCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeec--eeEEEEEEeCC
Q psy17422        160 MANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYG--FIGSIRLQISE  215 (512)
Q Consensus       160 ~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G--~~G~v~~~~~~  215 (512)
                       .......+++|+||+|+|+..++..+++.|++.++|+|.+++.|  +.|++.+..|+
T Consensus       129 -~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~~~Gqv~~~~pg  185 (292)
T 3h8v_A          129 -NGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPG  185 (292)
T ss_dssp             -HBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTSSEEEEEEECTT
T ss_pred             -ccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeecceeEEEEEEECCC
Confidence             00000126899999999999999999999999999999999986  89999988775

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=99.95  E-value=6.4e-28  Score=274.11  Aligned_cols=147  Identities=27%  Similarity=0.425  Sum_probs=137.0

Q ss_pred             CCCHHHHHHH-hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC
Q psy17422          1 LWGDHGQAAL-ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN   79 (512)
Q Consensus         1 LwG~~~Q~~L-~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln   79 (512)
                      .||.++|+++ +++||+|||+||+||+++|+|+++|||+|+|+|+|+|+.+||+|||+++.+|||++||++++++|+++|
T Consensus       399 ~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~n  478 (805)
T 2nvu_B          399 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV  478 (805)
T ss_dssp             CCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHC
Confidence            3799999988 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhh
Q psy17422         80 PDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVL  159 (512)
Q Consensus        80 p~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  159 (512)
                      |+|+++++...+.                                                                   
T Consensus       479 p~~~v~~~~~~~~-------------------------------------------------------------------  491 (805)
T 2nvu_B          479 PNCNVVPHFNKIQ-------------------------------------------------------------------  491 (805)
T ss_dssp             TTCEEEEEESCGG-------------------------------------------------------------------
T ss_pred             CCCEEEEEecccc-------------------------------------------------------------------
Confidence            9999999888776                                                                   


Q ss_pred             ccCCCCCCccccEEEEcCCChHHHHHHHHHHHhC------------CCcEEEEeeeceeEEEEEEeCC
Q psy17422        160 MANDPNFFQSFHMVISTNLPETTLIELSKTLWSL------------NIPLLACRSYGFIGSIRLQISE  215 (512)
Q Consensus       160 ~~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~------------~ip~i~~~~~G~~G~v~~~~~~  215 (512)
                       ..+.+++++||+||+|.|+..++..+++.|...            ++|+|++++.|+.|++++++|+
T Consensus       492 -~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~~~p~  558 (805)
T 2nvu_B          492 -DFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPG  558 (805)
T ss_dssp             -GSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECTT
T ss_pred             -ccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEEECCC
Confidence             012356778999999999999999999999874            9999999999999999999987

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=99.94  E-value=1.7e-27  Score=241.77  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=134.6

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      +|+..+|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|+|+.+|++|||+++.+|+|++||++++++|+++||
T Consensus        23 ll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP  102 (340)
T 3rui_A           23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  102 (340)
T ss_dssp             TCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             hcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCC
Confidence            68888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++.+..++..                      .|+|     ++.  ..+.     .+                  -.
T Consensus       103 ~v~v~~~~~~i~~----------------------~g~~-----~~~--~~~~-----~~------------------~~  130 (340)
T 3rui_A          103 LMDATGVKLSIPM----------------------IGHK-----LVN--EEAQ-----HK------------------DF  130 (340)
T ss_dssp             TCEEEEECCCCCC----------------------TTSC-----CSC--HHHH-----HH------------------HH
T ss_pred             CCEEEEEeccccc----------------------cCcc-----cch--hhhh-----cC------------------CH
Confidence            9999998876530                      0000     000  0000     00                  00


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQIS  214 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  214 (512)
                      .+..++++++|+|+.|+|+.+++..++++|+++++|+|+++ .|+.||+.+..+
T Consensus       131 ~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l~v~~g  183 (340)
T 3rui_A          131 DRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRHG  183 (340)
T ss_dssp             HHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEEEEECC
T ss_pred             HHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEEEEeec
Confidence            11234678999999999999999999999999999999975 999999988753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=99.94  E-value=4.5e-27  Score=231.18  Aligned_cols=146  Identities=21%  Similarity=0.307  Sum_probs=134.0

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      ||.++|.+|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||++++.+|+|++||++++++|.++||.
T Consensus        21 ~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  100 (249)
T 1jw9_B           21 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH  100 (249)
T ss_dssp             THHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+.+                                                                   .
T Consensus       101 ~~v~~~~~~~~~-------------------------------------------------------------------~  113 (249)
T 1jw9_B          101 IAITPVNALLDD-------------------------------------------------------------------A  113 (249)
T ss_dssp             SEEEEECSCCCH-------------------------------------------------------------------H
T ss_pred             cEEEEEeccCCH-------------------------------------------------------------------h
Confidence            999887766540                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeC
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQIS  214 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  214 (512)
                      +..+++.++|+||+|+++.+++..+++.|++.++|+|++++.|+.|++++..+
T Consensus       114 ~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~~~~p  166 (249)
T 1jw9_B          114 ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTY  166 (249)
T ss_dssp             HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECC
T ss_pred             HHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEEEEeC
Confidence            01234578999999999999999999999999999999999999999988654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=99.93  E-value=5.7e-26  Score=233.99  Aligned_cols=144  Identities=18%  Similarity=0.257  Sum_probs=130.4

Q ss_pred             CCCH--HH-HHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh
Q psy17422          1 LWGD--HG-QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE   77 (512)
Q Consensus         1 LwG~--~~-Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~   77 (512)
                      +||.  ++ |++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+|++||||++.+|+|++||++++++|++
T Consensus       104 ~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~  183 (353)
T 3h5n_A          104 SYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLK  183 (353)
T ss_dssp             HTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHH
Confidence            3775  55 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcch
Q psy17422         78 LNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQ  157 (512)
Q Consensus        78 lnp~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  157 (512)
                      +||+++++.+...+.+.                                                               
T Consensus       184 ~np~v~v~~~~~~i~~~---------------------------------------------------------------  200 (353)
T 3h5n_A          184 RNSEISVSEIALNINDY---------------------------------------------------------------  200 (353)
T ss_dssp             HCTTSEEEEEECCCCSG---------------------------------------------------------------
T ss_pred             HCCCCeEEEeecccCch---------------------------------------------------------------
Confidence            99999999998877500                                                               


Q ss_pred             hhccCCCCCCccccEEEEcCCChH-HHHHHHHHHHhCCCcEEEEeeeceeEEEEE
Q psy17422        158 VLMANDPNFFQSFHMVISTNLPET-TLIELSKTLWSLNIPLLACRSYGFIGSIRL  211 (512)
Q Consensus       158 ~~~~~~~~~~~~~~~Vi~~~~~~~-~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  211 (512)
                      .   ...+ ++++|+||+|+|+.. ++..++++|++.++|+|.+++.|..|++-.
T Consensus       201 ~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g~~g~~g~  251 (353)
T 3h5n_A          201 T---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGP  251 (353)
T ss_dssp             G---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEE
T ss_pred             h---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeCCEEEEEE
Confidence            0   0123 788999999999998 999999999999999999999999998754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.93  E-value=2.5e-26  Score=247.39  Aligned_cols=161  Identities=15%  Similarity=0.144  Sum_probs=134.9

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      ||+..||++|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.+|++|||+++.+|+|++||++++++|+++||
T Consensus       315 llp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP  394 (615)
T 4gsl_A          315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  394 (615)
T ss_dssp             TCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             hcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++++..++.-                    +  |+|        +...+    ...+                  -.
T Consensus       395 ~V~v~~~~~~Ipm--------------------~--gh~--------v~~e~----~~~l------------------~~  422 (615)
T 4gsl_A          395 LMDATGVKLSIPM--------------------I--GHK--------LVNEE----AQHK------------------DF  422 (615)
T ss_dssp             TCEEEEECCCCCC--------------------T--TCC--------CSCHH----HHHH------------------HH
T ss_pred             CcEEEEeeccccc--------------------c--Ccc--------ccchh----hhcC------------------CH
Confidence            9999998876530                    0  000        00000    0000                  00


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeC
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQIS  214 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  214 (512)
                      .+..+++.++|+||+|+|+.+++..++++|++.++|+|+++ .|+.|++.+..+
T Consensus       423 ~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~Gql~v~~g  475 (615)
T 4gsl_A          423 DRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRHG  475 (615)
T ss_dssp             HHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSSEEEEEECC
T ss_pred             HHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccceeEEEEeec
Confidence            11234578899999999999999999999999999999975 999999988653

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.93  E-value=5.1e-26  Score=245.04  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=133.0

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||..||++|++++|+|+|+||+||+++++|+++|||+|+|+|+|+|+.+||+||++++.+|+|++||++++++|+++||
T Consensus       316 ll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP  395 (598)
T 3vh1_A          316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  395 (598)
T ss_dssp             HCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++++...+.    +                +  |+        ++.....    ..+                  ..
T Consensus       396 ~v~v~~~~~~I~----~----------------p--gh--------~i~~~~~----~~l------------------~~  423 (598)
T 3vh1_A          396 LMDATGVKLSIP----M----------------I--GH--------KLVNEEA----QHK------------------DF  423 (598)
T ss_dssp             TCEEEEECCCCC----C----------------S--SC--------CCCSHHH----HHH------------------HH
T ss_pred             CcEEEEEecccc----c----------------c--Cc--------ccccccc----ccc------------------CH
Confidence            999999887653    0                0  00        0000000    000                  00


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEe
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQI  213 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  213 (512)
                      .+..++++++|+||+|+|+.+++..++++|++.++|+|.+ +.|+.|++.+..
T Consensus       424 ~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a-a~G~~Gqv~v~~  475 (598)
T 3vh1_A          424 DRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRH  475 (598)
T ss_dssp             HHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE-EECSSEEEEEEE
T ss_pred             HHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE-EECCccEEEEEc
Confidence            1123456789999999999999999999999999999996 799999998764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.74  E-value=2.1e-19  Score=180.32  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=117.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +|+.++||||++..+.|.           ....+.
T Consensus        40 g~Vy~a~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~-----------~~~~~~  101 (290)
T 3fpq_A           40 KTVYKGLDTETTV-------EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWE-----------STVKGK  101 (290)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------EEETTE
T ss_pred             cEEEEEEECCCCe-------EEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEe-----------eccCCC
Confidence            7888888888887       8999988654322111122 344  789999999998776651           111112


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCe
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      -.++.+|++|. .++..++.      +....+...++.++.|++.||.| |.++  |+|||||     |+||++....+.
T Consensus       102 ~~~~lvmEy~~gg~L~~~l~------~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlK-----p~NILl~~~~g~  170 (290)
T 3fpq_A          102 KCIVLVTELMTSGTLKTYLK------RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK-----CDNIFITGPTGS  170 (290)
T ss_dssp             EEEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCC-----GGGEEESSTTSC
T ss_pred             cEEEEEEeCCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccC-----hhheeEECCCCC
Confidence            24789999998 46666654      33457888999999999999999 9988  9999999     999999754589


Q ss_pred             EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+|+....+.....+||++|+||
T Consensus       171 vKl~DFGla~~~~~~~~~~~~GTp~YmAP  199 (290)
T 3fpq_A          171 VKIGDLGLATLKRASFAKAVIGTPEFMAP  199 (290)
T ss_dssp             EEECCTTGGGGCCTTSBEESCSSCCCCCG
T ss_pred             EEEEeCcCCEeCCCCccCCcccCccccCH
Confidence            99999999986555556678999999999

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.72  E-value=3.3e-19  Score=180.37  Aligned_cols=148  Identities=18%  Similarity=0.216  Sum_probs=116.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  ....+..-.+|  +|+.++||||+++.+.|           +.++. 
T Consensus        46 g~V~~a~~~~~~~-------~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----------~~~~~-  106 (311)
T 4aw0_A           46 STVVLARELATSR-------EYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----------QDDEK-  106 (311)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSSE-
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EeCCE-
Confidence            7888899988888       89999986532  22233222455  79999999999887777           22222 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         ++.+|++|.. ++..+++      +....++..++.++.|++.||.| |.++|+|||||     |+||++.. .+.+
T Consensus       107 ---~yivmEy~~gG~L~~~i~------~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlK-----PeNILl~~-~g~v  171 (311)
T 4aw0_A          107 ---LYFGLSYAKNGELLKYIR------KIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLK-----PENILLNE-DMHI  171 (311)
T ss_dssp             ---EEEEECCCTTEEHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TSCE
T ss_pred             ---EEEEEecCCCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC-----HHHeEEcC-CCCE
Confidence               8999999985 7666654      33458889999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+..    .......+|||++|+||
T Consensus       172 Kl~DFGla~~~~~~~~~~~~~~~~GTp~YmAP  203 (311)
T 4aw0_A          172 QITDFGTAKVLSPESKQARANSFVGTAQYVSP  203 (311)
T ss_dssp             EECCCTTCEECCTTTTCCCBCCCCSCGGGCCH
T ss_pred             EEEEcCCceecCCCCCcccccCcccCcccCCH
Confidence            99999999732    22345678999999998

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.72  E-value=5e-19  Score=176.19  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+... ....... .+|  +|+.++||||++..+.|           +.++  
T Consensus        27 g~V~~~~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----------~~~~--   86 (275)
T 3hyh_A           27 GKVKLAYHTTTGQ-------KVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----------KSKD--   86 (275)
T ss_dssp             CCEEEEECTTTCC-------EEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----------EECC--
Confidence            7889999998888       899999875432 2222233 355  78999999999887776           2222  


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        -++.+||+|..++..++.      ++...+...++.++.|++.|+.| |.++|+|||||     |+||++.. .+.+|
T Consensus        87 --~~~ivmEy~~g~L~~~l~------~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiK-----P~NILl~~-~~~vk  152 (275)
T 3hyh_A           87 --EIIMVIEYAGNELFDYIV------QRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLK-----PENLLLDE-HLNVK  152 (275)
T ss_dssp             --EEEEEEECCCEEHHHHHH------HSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----TTTEEECT-TCCEE
T ss_pred             --EEEEEEeCCCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----hHHeEECC-CCCEE
Confidence              288999999877666553      34568999999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+.. .....+.++||++|+||
T Consensus       153 l~DFGla~~~~~~~~~~~~~GT~~Y~AP  180 (275)
T 3hyh_A          153 IADFGLSNIMTDGNFLKTSCGSPNYAAP  180 (275)
T ss_dssp             ECCSSCC---------------CTTSCH
T ss_pred             EeecCCCeecCCCCccCCeeECcccCCh
Confidence            9999999843 34456678999999998

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.72  E-value=6.7e-19  Score=180.61  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=114.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+...... ....-.+|  +|+.++||||+++.+.|           ..++.   
T Consensus        88 G~V~~a~~~~tg~-------~vAiK~i~~~~~~-~~~~~~~Ei~il~~l~HpnIV~l~~~~-----------~~~~~---  145 (346)
T 4fih_A           88 GIVCIATVRSSGK-------LVAVKKMDLRKQQ-RRELLFNEVVIMRDYQHENVVEMYNSY-----------LVGDE---  145 (346)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEGGGCS-SGGGGHHHHHHHHHCCCTTBCCEEEEE-----------EETTE---
T ss_pred             eEEEEEEECCCCC-------EEEEEEEecCchh-HHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EECCE---
Confidence            7788888888887       8999998654321 11112455  79999999999887776           22222   


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       ++.+||+|.. ++..++.       +...++..++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|+
T Consensus       146 -~~ivmEy~~gg~L~~~l~-------~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----p~NILl~~-~g~vKl  211 (346)
T 4fih_A          146 -LWVVMEFLEGGALTDIVT-------HTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK-----SDSILLTH-DGRVKL  211 (346)
T ss_dssp             -EEEEECCCTTEEHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEEE
T ss_pred             -EEEEEeCCCCCcHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----HHHEEECC-CCCEEE
Confidence             8999999985 5555442       2358899999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+..  .....+.+|||++|+||
T Consensus       212 ~DFGla~~~~~~~~~~~~~~GTp~YmAP  239 (346)
T 4fih_A          212 SDFGFCAQVSKEVPRRKSLVGTPYWMAP  239 (346)
T ss_dssp             CCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred             ecCcCceecCCCCCcccccccCcCcCCH
Confidence            999999842  33456789999999998

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.71  E-value=5.4e-19  Score=184.98  Aligned_cols=154  Identities=25%  Similarity=0.262  Sum_probs=117.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.       .+|+|.+.+.......... ++|  +|+.++||||+++.+.|..    ...|.+ .+   
T Consensus        68 G~V~~a~~~~t~~-------~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~----~~~~~~-~~---  132 (398)
T 4b99_A           68 GVVSSARRRLTGQ-------QVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRP----TVPYGE-FK---  132 (398)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCC----SSCTTT-CC---
T ss_pred             eEEEEEEECCCCC-------EEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeec----cccccc-CC---
Confidence            7888888888888       9999998764432221222 455  7999999999987765510    001111 11   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       -++.+|++|.+++..++      ..+...+...++.+++|++.||.| |.++|+|||||     |+||++.. .+.+|+
T Consensus       133 -~~~ivmE~~~g~L~~~i------~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlK-----P~NIl~~~-~~~~Ki  199 (398)
T 4b99_A          133 -SVYVVLDLMESDLHQII------HSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLK-----PSNLLVNE-NCELKI  199 (398)
T ss_dssp             -CEEEEEECCSEEHHHHH------TSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TCCEEE
T ss_pred             -EEEEEEeCCCCCHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcC-----ccccccCC-CCCEEE
Confidence             28999999987765554      344568899999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC------CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~------~~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+..      .....+.++||++||||
T Consensus       200 ~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~AP  231 (398)
T 4b99_A          200 GDFGMARGLCTSPAEHQYFMTEYVATRWYRAP  231 (398)
T ss_dssp             CCCTTCBCC-------CCCCCSSCCCCTTCCH
T ss_pred             eecceeeecccCccccccccccceeChHhcCH
Confidence            999999832      23346789999999998

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.70  E-value=1.6e-18  Score=182.24  Aligned_cols=145  Identities=14%  Similarity=0.160  Sum_probs=114.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.       .+|+|.+.....  ..... .+|  +|+.++||||+++.+.|.           .++   
T Consensus       165 G~V~~a~~~~tg~-------~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----------~~~---  221 (423)
T 4fie_A          165 GIVCIATVRSSGK-------LVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYL-----------VGD---  221 (423)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEESTTC--SSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----------ETT---
T ss_pred             cEEEEEEECCCCC-------EEEEEEEeccch--hHHHHHHHHHHHHHhCCCCCCCceEEEEE-----------ECC---
Confidence            6778888887777       899999864322  22222 455  799999999998877761           222   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++.+||+|.. ++..+++       +...++..++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|
T Consensus       222 -~~~iVmEy~~gG~L~~~i~-------~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiK-----p~NILl~~-~g~vK  287 (423)
T 4fie_A          222 -ELWVVMEFLEGGALTDIVT-------HTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK-----SDSILLTH-DGRVK  287 (423)
T ss_dssp             -EEEEEEECCTTEEHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----TTTEEECT-TCCEE
T ss_pred             -EEEEEEeCCCCCcHHHHHh-------ccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCC-----HHHEEEcC-CCCEE
Confidence             28999999985 5555543       2348899999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |+|||+|+..  .....+.+|||++||||
T Consensus       288 l~DFGla~~~~~~~~~~~~~~GTp~YmAP  316 (423)
T 4fie_A          288 LSDFGFCAQVSKEVPRRKSLVGTPYWMAP  316 (423)
T ss_dssp             ECCCTTCEECCSSCCCBCCCEECTTTCCH
T ss_pred             EecCccceECCCCCccccccccCcCcCCH
Confidence            9999999842  33456789999999998

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.69  E-value=4.5e-19  Score=182.21  Aligned_cols=150  Identities=18%  Similarity=0.238  Sum_probs=114.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.+.......... .+|  +|+.++||||+++.+.|           +.++.  
T Consensus        38 g~V~~a~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~-----------~~~~~--   97 (350)
T 4b9d_A           38 GKAILVKSTEDGR-------QYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF-----------EENGS--   97 (350)
T ss_dssp             -CEEEEEETTTCC-------EEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------EETTE--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE-----------EECCE--
Confidence            7788888888887       8999998654322111112 345  78999999999887776           22222  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        ++.+||+|. .++..++.-+    .....++..++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|
T Consensus        98 --~yiVmEy~~gg~L~~~i~~~----~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----p~NILl~~-~g~vK  165 (350)
T 4b9d_A           98 --LYIVMDYCEGGDLFKRINAQ----KGVLFQEDQILDWFVQICLALKHVHDRKILHRDIK-----SQNIFLTK-DGTVQ  165 (350)
T ss_dssp             --EEEEEECCTTCBHHHHHHHT----TTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCC-----GGGEEECT-TCCEE
T ss_pred             --EEEEEeCCCCCcHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----HHHEEECC-CCCEE
Confidence              899999998 5777776422    12335788999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCC--CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~--~~~t~yv~tr~YraP  512 (512)
                      |+|||+|+....  ...+.++||++|+||
T Consensus       166 l~DFGla~~~~~~~~~~~~~~GT~~YmAP  194 (350)
T 4b9d_A          166 LGDFGIARVLNSTVELARACIGTPYYLSP  194 (350)
T ss_dssp             ECSTTEESCCCHHHHHHHHHHSCCTTCCH
T ss_pred             EcccccceeecCCcccccccCCCccccCH
Confidence            999999985432  234578999999998

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.69  E-value=2.8e-18  Score=175.39  Aligned_cols=145  Identities=16%  Similarity=0.111  Sum_probs=110.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.++.+|.       .+|+|.++...    .-.+-.++|..++||||+++.+.|           ...+    .+
T Consensus        72 G~Vy~a~~~~~g~-------~vAiK~i~~~~----~~~~E~~il~~l~HpnIV~l~~~~-----------~~~~----~~  125 (336)
T 4g3f_A           72 GEVHRMKDKQTGF-------QCAVKKVRLEV----FRVEELVACAGLSSPRIVPLYGAV-----------REGP----WV  125 (336)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEETTT----CCTHHHHTTTTCCCTTBCCEEEEE-----------EETT----EE
T ss_pred             eEEEEEEECCCCC-------EEEEEEECHHH----hHHHHHHHHHhCCCCCCCcEEEEE-----------EECC----EE
Confidence            7888999988888       89999986421    111122268889999999887766           2222    28


Q ss_pred             eEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      +.+|++|. .++..+++      .+...+...+..++.|++.||.| |.++|+|||||     |+||++......+|++|
T Consensus       126 ~ivmEy~~gg~L~~~l~------~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----p~NILl~~~g~~vKl~D  194 (336)
T 4g3f_A          126 NIFMELLEGGSLGQLIK------QMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVK-----ADNVLLSSDGSRAALCD  194 (336)
T ss_dssp             EEEECCCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCC-----GGGEEECTTSCCEEECC
T ss_pred             EEEEeccCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccC-----HHHEEEeCCCCEEEEee
Confidence            89999998 57666654      33458899999999999999999 99999999999     99999976533699999


Q ss_pred             CCCCCCCCC-----C--CccCeeeeeeeccC
Q psy17422        489 FGSASWSHE-----N--EITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~~~~-----~--~~t~yv~tr~YraP  512 (512)
                      ||+|+....     .  .....+||++|+||
T Consensus       195 FGla~~~~~~~~~~~~~~~~~~~GT~~YmAP  225 (336)
T 4g3f_A          195 FGHALCLQPDGLGKSLLTGDYIPGTETHMAP  225 (336)
T ss_dssp             CTTCEEC------------CCCCCCGGGCCH
T ss_pred             CCCCeEccCCCcccceecCCccccCccccCH
Confidence            999973211     1  12346899999998

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.66  E-value=1.8e-18  Score=174.58  Aligned_cols=137  Identities=22%  Similarity=0.168  Sum_probs=102.7

Q ss_pred             ChHhHHHHhhhhcCC-CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHH
Q psy17422        349 NFEEAMKAVNFALIP-TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRY  424 (512)
Q Consensus       349 n~~eAik~v~~~~~~-~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~y  424 (512)
                      +..+|+|.+.+.... .....-.+|  +|..++||||+++.+.|           +.++    .++.+|++|. .++..+
T Consensus        52 ~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----------~~~~----~~~ivmEy~~gg~L~~~  116 (304)
T 3ubd_A           52 RQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF-----------QTEG----KLYLILDFLRGGDLFTR  116 (304)
T ss_dssp             TCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE-----------EETT----EEEEEECCCTTCEEHHH
T ss_pred             CEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----------EECC----EEEEEEEcCCCCCHHHH
Confidence            347899998654321 111122344  68889999999887776           2222    2899999998 576666


Q ss_pred             HHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC--CCCCcc
Q psy17422        425 IALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS--HENEIT  501 (512)
Q Consensus       425 v~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~--~~~~~t  501 (512)
                      ++      +....++..++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|++|||+|+..  .....+
T Consensus       117 l~------~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----p~NILl~~-~g~vKl~DFGla~~~~~~~~~~~  184 (304)
T 3ubd_A          117 LS------KEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLK-----PENILLDE-EGHIKLTDFGLSKESIDHEKKAY  184 (304)
T ss_dssp             HH------HHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC-----GGGEEECT-TSCEEEESSEEEEC-----CCCC
T ss_pred             HH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----HHHeEEcC-CCCEEecccccceeccCCCcccc
Confidence            54      33458889999999999999999 99999999999     99999975 489999999999842  344566


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      .++||++|+||
T Consensus       185 ~~~GT~~YmAP  195 (304)
T 3ubd_A          185 SFCGTVEYMAP  195 (304)
T ss_dssp             SCCCCGGGCCH
T ss_pred             ccccCcccCCH
Confidence            78999999998

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.64  E-value=8.9e-18  Score=169.18  Aligned_cols=162  Identities=12%  Similarity=0.102  Sum_probs=105.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+...... ..... .+|  +|+.++||||++..+.|..-- ....+..  ....
T Consensus        19 g~V~~a~~~~~~~-------~vAiK~i~~~~~~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~-~~~~~~~--~~~~   87 (299)
T 4g31_A           19 GVVFEAKNKVDDC-------NYAIKRIRLPNRE-LAREKVMREVKALAKLEHPGIVRYFNAWLEKN-TTEKLQP--SSPK   87 (299)
T ss_dssp             -EEEEEEETTTCC-------EEEEEEEEECSSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------------C
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeccCCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEecC-ccccccc--cCCC
Confidence            7888999988888       8999988643211 11112 345  789999999998776652100 0000000  0111


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .-++.+|++|. .++..+++-+...   ...+...+..++.|++.||.| |+++|+|||||     |+||++.. .+.+|
T Consensus        88 ~~l~ivmE~~~gg~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlK-----p~NILl~~-~~~vK  158 (299)
T 4g31_A           88 VYLYIQMQLCRKENLKDWMNGRCTI---EERERSVCLHIFLQIAEAVEFLHSKGLMHRDLK-----PSNIFFTM-DDVVK  158 (299)
T ss_dssp             EEEEEEEECCCSCCHHHHHHTCCSG---GGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TCCEE
T ss_pred             cEEEEEEecCCCCcHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHHHHHHHCcCccccCc-----HHHeEECC-CCcEE
Confidence            22789999997 5776666532221   124566788999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCC--------------CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--------------~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+...              ....+.+|||++||||
T Consensus       159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAP  199 (299)
T 4g31_A          159 VGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSP  199 (299)
T ss_dssp             ECCCCCC--------------------------CCCTTSCH
T ss_pred             EccCccceecCCCccccccccccccccccCCcccCccccCH
Confidence            99999997321              1124568999999998

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.60  E-value=3.6e-17  Score=169.00  Aligned_cols=145  Identities=19%  Similarity=0.159  Sum_probs=102.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+++.++...    .++..+|+|.+...    .-+.. .+|  +|+.+ +||||+++.+.|           +..++ 
T Consensus        35 g~Vy~a~~~~~~----~~~~~vAiK~i~~~----~~~~~~~~E~~~l~~~~~h~nIv~l~~~~-----------~~~~~-   94 (361)
T 4f9c_A           35 SSVYLATAQLQV----GPEEKIALKHLIPT----SHPIRIAAELQCLTVAGGQDNVMGVKYCF-----------RKNDH-   94 (361)
T ss_dssp             EEEEEEEEEBTT----SCEEEEEEEEECTT----SCHHHHHHHHHHHHHTCSBTTBCCCSEEE-----------EETTE-
T ss_pred             cEEEEEEEcccC----CCCCEEEEEEEccc----cCHHHHHHHHHHHHHhcCCCCCceEEEEE-----------EECCE-
Confidence            566666554211    12347899987542    22222 344  56665 699999988777           22222 


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         ++.+||+|. .++..+++         ..+...++.++.|++.||.| |.++|+|||||     |+||++....+.+
T Consensus        95 ---~~lvmE~~~g~~L~~~~~---------~l~~~~~~~~~~qll~al~ylH~~gIiHRDiK-----PeNiLl~~~~~~~  157 (361)
T 4f9c_A           95 ---VVIAMPYLEHESFLDILN---------SLSFQEVREYMLNLFKALKRIHQFGIVHRDVK-----PSNFLYNRRLKKY  157 (361)
T ss_dssp             ---EEEEEECCCCCCHHHHHT---------TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEETTTTEE
T ss_pred             ---EEEEEeCCCcccHHHHHc---------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCC-----HHHeEEeCCCCeE
Confidence               889999997 45555441         37888999999999999999 99999999999     9999997665899


Q ss_pred             EEecCCCCCCCC------------------------------CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH------------------------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~------------------------------~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+...                              ...++.+|||++||||
T Consensus       158 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~AP  215 (361)
T 4f9c_A          158 ALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAP  215 (361)
T ss_dssp             EECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCH
T ss_pred             EECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCH
Confidence            999999986211                              1134678999999998

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.59  E-value=8.9e-17  Score=177.06  Aligned_cols=148  Identities=18%  Similarity=0.171  Sum_probs=114.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHH-----HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVA-----SILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~-----ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      |.|..+.++.+|.       .+|+|.+.+..  .........+     ++++.++||||+++...|           +..
T Consensus       203 G~V~la~~~~tg~-------~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f-----------~~~  264 (689)
T 3v5w_A          203 GEVYGCRKADTGK-------MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----------HTP  264 (689)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE-----------ECS
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEE-----------EEC
Confidence            6788888888888       89999886432  1111111112     256677899999888777           222


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      +.    ++.+|++|. +++..++.      .....++..++.|+.|++.||.| |.++|+|||||     |+||++.. .
T Consensus       265 ~~----lylVmEy~~GGdL~~~l~------~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLK-----PeNILld~-~  328 (689)
T 3v5w_A          265 DK----LSFILDLMNGGDLHYHLS------QHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLK-----PANILLDE-H  328 (689)
T ss_dssp             SE----EEEEECCCCSCBHHHHHH------HHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS-----GGGEEECT-T
T ss_pred             CE----EEEEEecCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc-----hHHeEEeC-C
Confidence            22    899999998 57666653      33458889999999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |.+||+|||+|+........++|||++|+||
T Consensus       329 G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAP  359 (689)
T 3v5w_A          329 GHVRISDLGLACDFSKKKPHASVGTHGYMAP  359 (689)
T ss_dssp             SCEEECCCTTCEECSSCCCCSCCSCGGGCCH
T ss_pred             CCEEecccceeeecCCCCCCCccCCcCccCH
Confidence            8999999999985544445678999999998

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.56  E-value=3.3e-16  Score=158.36  Aligned_cols=142  Identities=12%  Similarity=0.084  Sum_probs=105.3

Q ss_pred             ChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHH
Q psy17422        349 NFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRY  424 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~y  424 (512)
                      +..+|+|.+..... ...... .+|  +|..++||||+++...+.           .    .-|++.++|+|. +++..|
T Consensus        56 ~~~VAvK~l~~~~~-~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-----------~----~~~~~lV~Ey~~~G~L~~~  119 (308)
T 4gt4_A           56 TQAVAIKTLKDKAE-GPLREEFRHEAMLRARLQHPNVVCLLGVVT-----------K----DQPLSMIFSYCSHGDLHEF  119 (308)
T ss_dssp             CEEEEEEECCC-CC-C-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------S----SSSCEEEEECCSSCBHHHH
T ss_pred             CeEEEEEEECcccC-hHHHHHHHHHHHHHHhCCCCCCCCcceEEE-----------E----CCEEEEEEEcCCCCcHHHH
Confidence            34799999864322 222233 344  789999999998766551           1    125899999998 688888


Q ss_pred             HHhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        425 IALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       425 v~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      +..+...          ..+...+...+..++.|++.|+.| |+++|+|||||     |+||++.. .+.+|++|||+|+
T Consensus       120 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK-----~~NILl~~-~~~~Ki~DFGlar  193 (308)
T 4gt4_A          120 LVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLA-----TRNVLVYD-KLNVKISDLGLFR  193 (308)
T ss_dssp             HHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEECCSCCBC
T ss_pred             HHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-----ccceEECC-CCCEEECCcccce
Confidence            7543221          113347788899999999999999 99999999999     99999975 4899999999998


Q ss_pred             CCC----CCCccCeeeeeeeccC
Q psy17422        494 WSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~~~----~~~~t~yv~tr~YraP  512 (512)
                      ...    ....+..+||..|+||
T Consensus       194 ~~~~~~~~~~~~~~~gt~~ymAP  216 (308)
T 4gt4_A          194 EVYAADYYKLLGNSLLPIRWMAP  216 (308)
T ss_dssp             GGGGGGCBCSSSSSCBCGGGCCH
T ss_pred             eccCCCceeEecccccCCcccCH
Confidence            421    2234567899999998

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.54  E-value=3.4e-16  Score=158.16  Aligned_cols=151  Identities=16%  Similarity=0.120  Sum_probs=102.0

Q ss_pred             hhccccCCCCCCCc-ChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        335 RIRKDENGIPLSEE-NFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       335 ~~~~~~~~~~~~~~-n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      ++..+..|.+|... +..+|+|.++........-.. .+|  +|..++||||+.+...+           . ++    .+
T Consensus        43 ~iG~G~fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~-----------~-~~----~~  106 (307)
T 3omv_A           43 RIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYM-----------T-KD----NL  106 (307)
T ss_dssp             ECCCCSSSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------C-SS----SC
T ss_pred             EEeeCCCcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------E-CC----eE
Confidence            34444444444322 225788877543211111112 234  78999999999765432           1 11    27


Q ss_pred             eEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEec
Q psy17422        411 RGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCD  488 (512)
Q Consensus       411 ~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~D  488 (512)
                      +.+|++|. .++..++.     ..+...+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|++|
T Consensus       107 ~iVmEy~~gGsL~~~l~-----~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlK-----p~NILl~~-~~~~Ki~D  175 (307)
T 3omv_A          107 AIVTQWCEGSSLYKHLH-----VQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMK-----SNNIFLHE-GLTVKIGD  175 (307)
T ss_dssp             EEEEECCSSCBHHHHHH-----TSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCC-----SSSEEEET-TEEEEECC
T ss_pred             EEEEEcCCCCCHHHHHh-----hcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccC-----HHHEEECC-CCcEEEee
Confidence            89999998 56666653     223458888999999999999999 99999999999     99999975 48999999


Q ss_pred             CCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        489 FGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       489 fGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      ||+|+...    ....+..+||..|+||
T Consensus       176 FGla~~~~~~~~~~~~~~~~GT~~ymAP  203 (307)
T 3omv_A          176 FGLATVKSRWSGSQQVEQPTGSVLWMAP  203 (307)
T ss_dssp             CSSCBC------------CCCCTTSCCH
T ss_pred             ccCceecccCCcceeecccccCCCccCH
Confidence            99998422    2235667999999998

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.52  E-value=3.9e-16  Score=170.73  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=114.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.....  .-... .+|  +|+.++||||+++.+.|           +..+   
T Consensus       171 g~V~~~~~~~tg~-------~~AiK~i~~~~~--~~~~~~~~Ei~il~~l~hpnIv~l~~~~-----------~~~~---  227 (573)
T 3uto_A          171 GVVHRVTERATGN-------NFAAKFVMTPHE--SDKETVRKEIQTMSVLRHPTLVNLHDAF-----------EDDN---  227 (573)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECCSH--HHHHHHHHHHHHHHHTCCTTBCCEEEEE-----------ECSS---
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeccch--hhHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EECC---
Confidence            7889999999998       889998754211  01112 344  78999999999888777           2222   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC-CCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES-KLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~-~~~~  484 (512)
                       .++.+||+|.. ++..++.     ......+...++.|+.|++.||.| |.++|+|||||     |+||++... .+.+
T Consensus       228 -~~~iv~E~~~gg~L~~~i~-----~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlK-----p~Nill~~~~~~~v  296 (573)
T 3uto_A          228 -EMVMIYEFMSGGELFEKVA-----DEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLK-----PENIMFTTKRSNEL  296 (573)
T ss_dssp             -EEEEEEECCCCCBHHHHHT-----CTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSSSCCCE
T ss_pred             -EEEEEEeecCCCcHHHHHH-----HhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----hhhccccCCCCCCE
Confidence             38999999985 6555542     223457888999999999999999 99999999999     999999753 3789


Q ss_pred             EEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+. .+...+..++||++|+||
T Consensus       297 Kl~DFG~a~~~~~~~~~~~~~GT~~y~AP  325 (573)
T 3uto_A          297 KLIDFGLTAHLDPKQSVKVTTGTAEFAAP  325 (573)
T ss_dssp             EECCCSSCEECCTTSEEEEECSSGGGCCH
T ss_pred             EEeeccceeEccCCCceeeeEECccccCH
Confidence            9999999984 345556788999999998

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.50  E-value=1.2e-15  Score=153.64  Aligned_cols=140  Identities=14%  Similarity=0.101  Sum_probs=102.8

Q ss_pred             hHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      ..+|+|.+...-  .....+ .+|  +|..++||||+++...+.          +     .-+++.+||+|. .++..|+
T Consensus        44 ~~vAvK~l~~~~--~~~~~~f~~E~~il~~l~HpnIV~l~g~~~----------~-----~~~~~lV~Ey~~~G~L~~~l  106 (299)
T 4asz_A           44 ILVAVKTLKDAS--DNARKDFHREAELLTNLQHEHIVKFYGVCV----------E-----GDPLIMVFEYMKHGDLNKFL  106 (299)
T ss_dssp             EEEEEEEECSCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEC----------S-----SSSEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEEeCCCC--hHHHHHHHHHHHHHHhCCCCCCccEEEEEe----------e-----CCEEEEEEEcCCCCcHHHHH
Confidence            378999876421  111112 344  789999999998776661          1     124899999998 6888887


Q ss_pred             HhHHhh-------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC
Q psy17422        426 ALQQLY-------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE  497 (512)
Q Consensus       426 ~L~~iy-------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~  497 (512)
                      .-....       ......+...+..++.|++.|+.| |.++|+|||||     |+||++.. ++.+|++|||+|+....
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlK-----p~NILl~~-~~~~Ki~DFGla~~~~~  180 (299)
T 4asz_A          107 RAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLA-----TRNCLVGE-NLLVKIGDFGMSRDVYS  180 (299)
T ss_dssp             HHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEECCCSCHHHHTG
T ss_pred             HhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccC-----HhhEEECC-CCcEEECCcccceecCC
Confidence            543211       112357888999999999999999 99999999999     99999975 48999999999973221


Q ss_pred             ----CCccCeeeeeeeccC
Q psy17422        498 ----NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 ----~~~t~yv~tr~YraP  512 (512)
                          ......++|..|+||
T Consensus       181 ~~~~~~~~~~~gt~~ymAP  199 (299)
T 4asz_A          181 TDYYRVGGHTMLPIRWMPP  199 (299)
T ss_dssp             GGCEEETTTEEECGGGCCH
T ss_pred             CCceeecCceecChhhcCH
Confidence                122356899999998

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.50  E-value=1.2e-15  Score=155.54  Aligned_cols=141  Identities=14%  Similarity=0.057  Sum_probs=97.0

Q ss_pred             ChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHH
Q psy17422        349 NFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRY  424 (512)
Q Consensus       349 n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~y  424 (512)
                      +..+|+|.+...-  ...... .+|  +|..++||||+++...+.           .    .-+++.+||+|. .++..|
T Consensus        71 ~~~vAvK~l~~~~--~~~~~~f~~E~~il~~l~HpnIV~l~g~~~-----------~----~~~~~lV~Ey~~~G~L~~~  133 (329)
T 4aoj_A           71 KMLVAVKALKEAS--ESARQDFQREAELLTMLQHQHIVRFFGVCT-----------E----GRPLLMVFEYMRHGDLNRF  133 (329)
T ss_dssp             CEEEEEEEESCCS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----------S----SSSEEEEEECCTTCBHHHH
T ss_pred             CeEEEEEEECcCC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----------E----CCEEEEEEEcCCCCcHHHH
Confidence            3478999886421  111112 344  789999999998776651           1    124899999998 688777


Q ss_pred             HHhHHhh---------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        425 IALQQLY---------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       425 v~L~~iy---------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      +.-....         ..+...+...+..++.|++.|+.| |..+|+|||||     |+||++.. .+.+|++|||+|+.
T Consensus       134 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK-----p~NILl~~-~~~~Ki~DFGla~~  207 (329)
T 4aoj_A          134 LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLA-----TRNCLVGQ-GLVVKIGDFGMSRD  207 (329)
T ss_dssp             HHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEEET-TTEEEECCCC----
T ss_pred             HHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeeccccc-----HhhEEECC-CCcEEEccccccee
Confidence            7532110         112347888899999999999999 99999999999     99999975 48999999999984


Q ss_pred             CC----CCCccCeeeeeeeccC
Q psy17422        495 SH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       495 ~~----~~~~t~yv~tr~YraP  512 (512)
                      ..    ....+..++|..|+||
T Consensus       208 ~~~~~~~~~~~~~~gt~~ymAP  229 (329)
T 4aoj_A          208 IYSTDYYRVGGRTMLPIRWMPP  229 (329)
T ss_dssp             ------------CCCCGGGCCH
T ss_pred             ccCCCcceecCcccccccccCh
Confidence            32    1223456899999998

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.49  E-value=1.1e-15  Score=154.11  Aligned_cols=145  Identities=17%  Similarity=0.031  Sum_probs=100.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH--HHH--HhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV--ASI--LNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~--~el--l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+++..  +|.       .+|+|.+....    .....  +|+  +..++||||++....+.           .++..
T Consensus        17 G~Vy~~~~--~g~-------~VAvK~l~~~~----~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~-----------~~~~~   72 (303)
T 3hmm_A           17 GEVWRGKW--RGE-------EVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFIAADN-----------KDNGT   72 (303)
T ss_dssp             SEEEEEEE--TTE-------EEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEE-----------EECSS
T ss_pred             eEEEEEEE--CCE-------EEEEEEECccc----hhhHHHHHHHHHHhcCCCCCCCcEEEEEE-----------ecCCC
Confidence            66777654  455       89999875421    11112  334  35678999997765541           22223


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC--------CCChHHHHhhcccccccc
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS--------AITEAQVKLFCRNASFIH  476 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~--------~I~hrdIK~Fc~n~~nIl  476 (512)
                      ..+++.+||+|. .++..+++-       ...+......++.|++.|+.| |.+        +|+|||||     |+||+
T Consensus        73 ~~~~~lV~Ey~~~gsL~~~l~~-------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlK-----p~NIL  140 (303)
T 3hmm_A           73 WTQLWLVSDYHEHGSLFDYLNR-------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK-----SKNIL  140 (303)
T ss_dssp             SEEEEEEEECCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCC-----GGGEE
T ss_pred             ceEEEEEecCCCCCcHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCC-----cccEE
Confidence            345899999998 577666631       246778888999999999999 876        99999999     99999


Q ss_pred             ccCCCCeEEEecCCCCCCCC--C----CCccCeeeeeeeccC
Q psy17422        477 VNESKLVLKLCDFGSASWSH--E----NEITPYLVSRFYRAP  512 (512)
Q Consensus       477 l~~~~~~~Kl~DfGlar~~~--~----~~~t~yv~tr~YraP  512 (512)
                      +.. ++.+|++|||+|+...  .    ......+||++|+||
T Consensus       141 l~~-~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAP  181 (303)
T 3hmm_A          141 VKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP  181 (303)
T ss_dssp             ECT-TSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCH
T ss_pred             ECC-CCCEEEEeCCCCccccCCCCceeeecccccccccccCH
Confidence            975 4899999999997321  1    123457999999998

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.49  E-value=2.8e-15  Score=158.90  Aligned_cols=153  Identities=20%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.+.+........ .+|  +|+.++|+||+.+.+.|.          .......
T Consensus        67 g~V~~~~~~~~~~-------~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----------~~~~~~~  129 (458)
T 3rp9_A           67 GHVCEAYDKLEKR-------VVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVI----------PKDVEKF  129 (458)
T ss_dssp             -CEEEEEECC--C-------EEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECC----------CSCTTTC
T ss_pred             eEEEEEEECCCCc-------EEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEe----------cCCcccC
Confidence            6788888888877       8999988654332211122 344  788999999998776551          1111112


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.++++|..++..++      +.....+...++.++.|++.+|.| |..+|+|||||     |+||++.. .+.+|+
T Consensus       130 ~~~~lv~e~~~~~L~~~~------~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlK-----p~NILl~~-~~~~kl  197 (458)
T 3rp9_A          130 DELYVVLEIADSDFKKLF------RTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLK-----PANCLVNQ-DCSVKV  197 (458)
T ss_dssp             CCEEEEECCCSEEHHHHH------HSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TCCEEE
T ss_pred             ceEEEEEeccccchhhhc------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCC-----hhhEEECC-CCCEee
Confidence            238899999987765554      344457889999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCC-----------------------------CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-----------------------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-----------------------------~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...                             ...++.++||+||+||
T Consensus       198 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aP  252 (458)
T 3rp9_A          198 CDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAP  252 (458)
T ss_dssp             CCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCH
T ss_pred             cccccchhccCccccccccccCccccccccccccccccccccccCCcccccccCh
Confidence            9999987321                             0235788999999998

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.44  E-value=5.8e-15  Score=151.95  Aligned_cols=160  Identities=15%  Similarity=0.049  Sum_probs=107.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCC-CCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNAC-VNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~-~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++....++...  ....+|+|.+...........-.+|  +|..++| |||+++...+.          +    ..
T Consensus        78 G~Vy~a~~~~~~~~~--~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~----------~----~~  141 (353)
T 4ase_A           78 GQVIEADAFGIDKTA--TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT----------K----PG  141 (353)
T ss_dssp             EEEEEEEEETSSSTT--CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----------C----TT
T ss_pred             eEEEEEEEcCCCccc--CCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEE----------e----cC
Confidence            667776655444311  1125778776542211111011334  5666654 89997766551          1    11


Q ss_pred             cceeEEecccc-CChHHHHHhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                      -|++.+||+|. .++..|++-..-.          ..+...+...+..++.|++.|+.| |.++|+|||||     |+||
T Consensus       142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK-----~~NI  216 (353)
T 4ase_A          142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA-----ARNI  216 (353)
T ss_dssp             SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGE
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccC-----ccce
Confidence            25889999998 5888887532210          012336788899999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCCC-C---CccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSHE-N---EITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~~-~---~~t~yv~tr~YraP  512 (512)
                      ++.. ++.+|++|||+|+.... .   ..+..++|..|+||
T Consensus       217 Ll~~-~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAP  256 (353)
T 4ase_A          217 LLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  256 (353)
T ss_dssp             EECG-GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred             eeCC-CCCEEECcchhhhhcccCCCceeeccccccccccCH
Confidence            9975 48999999999984321 1   23467899999998

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.43  E-value=1.5e-14  Score=154.05  Aligned_cols=152  Identities=22%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.+.......... .+|  +|+.++||||+++.+.|..     ....    ...
T Consensus        76 g~V~~a~~~~~~~-------~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-----~~~~----~~~  139 (464)
T 3ttj_A           76 GIVCAAYDAVLDR-------NVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTP-----QKTL----EEF  139 (464)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS-----CCST----TTC
T ss_pred             eEEEEEEECCCCC-------EEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEcc-----CCcc----ccC
Confidence            6677777777777       8999998765432222222 344  6888999999988776620     0000    011


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      --++.++|+|..++..++.      .  ..+...++.++.|++.+|.| |..+|+|||||     |+||++.. .+.+|+
T Consensus       140 ~~~~lv~E~~~~~l~~~~~------~--~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlk-----p~NIll~~-~~~~kl  205 (464)
T 3ttj_A          140 QDVYLVMELMDANLCQVIQ------M--ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLKI  205 (464)
T ss_dssp             CEEEEEEECCSEEHHHHHT------S--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCEEE
T ss_pred             CeEEEEEeCCCCCHHHHHh------h--cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----hHhEEEeC-CCCEEE
Confidence            2378999999887544442      2  37888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.. .....+.+++|++|+||
T Consensus       206 ~DFG~a~~~~~~~~~~~~~gt~~y~aP  232 (464)
T 3ttj_A          206 LDFGLARTAGTSFMMTPYVVTRYYRAP  232 (464)
T ss_dssp             CCCCCC-----CCCC----CCCTTCCH
T ss_pred             EEEEeeeecCCCcccCCCcccccccCH
Confidence            999999843 33456789999999998

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.43  E-value=7.2e-15  Score=154.91  Aligned_cols=153  Identities=20%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...+........ .+|  +|+.++|+||+...+.|.          .......
T Consensus        40 g~V~~a~~~~~~~-------~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~----------~~~~~~~  102 (432)
T 3n9x_A           40 GYVYLAYDKNTEK-------NVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLII----------PDDLLKF  102 (432)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECC----------CSCTTTC
T ss_pred             EEEEEEEECCCCc-------EEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEe----------cCCCCcC
Confidence            6678888877777       8999998765432211122 344  688999999998766551          1110111


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -.++.++++|..++..++      +.....+...++.++.|++.+|.| |..+|+|||||     |+||++.. .+.+|+
T Consensus       103 ~~~~lv~e~~~~~L~~~~------~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlk-----p~NILl~~-~~~~kL  170 (432)
T 3n9x_A          103 DELYIVLEIADSDLKKLF------KTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLK-----PANCLLNQ-DCSVKV  170 (432)
T ss_dssp             CCEEEEEECCSEEHHHHH------HSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEEE
T ss_pred             CeEEEEEecCCcCHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHeEECC-CCCEEE
Confidence            237899999988765555      334457889999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCCC------------------------CCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHE------------------------NEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~------------------------~~~t~yv~tr~YraP  512 (512)
                      +|||+++....                        ..++.+++|+||+||
T Consensus       171 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  220 (432)
T 3n9x_A          171 CDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAP  220 (432)
T ss_dssp             CCCTTCEEC-------------------------------CCCCCTTCCH
T ss_pred             ccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCH
Confidence            99999873211                        235789999999998

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.42  E-value=1.9e-14  Score=146.33  Aligned_cols=148  Identities=16%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...+   
T Consensus        29 g~V~~a~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~-----------~~~~---   87 (328)
T 3fe3_A           29 AKVKLARHILTGR-------EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVI-----------ETEK---   87 (328)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS---
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------EECC---
Confidence            6788888888887       8999988654322111111 344  68889999999876655           1211   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++++|.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|||||     |+||++.. .+.+|
T Consensus        88 -~~~lv~e~~~~~~L~~~l~------~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlk-----p~NIll~~-~~~~k  154 (328)
T 3fe3_A           88 -TLYLIMEYASGGEVFDYLV------AHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLK-----AENLLLDA-DMNIK  154 (328)
T ss_dssp             -EEEEEECCCTTCBHHHHHH------HHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSCEE
T ss_pred             -EEEEEEECCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCC-----HHHEEEcC-CCCEE
Confidence             27899999974 6555553      33457888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++. ........+++|++|+||
T Consensus       155 l~DFG~a~~~~~~~~~~~~~gt~~y~aP  182 (328)
T 3fe3_A          155 IADFGFSNEFTVGGKLDAFCGAPPYAAP  182 (328)
T ss_dssp             ECSTTCCGGGSSSCGGGTTSSSGGGCCH
T ss_pred             EeeccCceecCCCCccccccCCcceeCc
Confidence            999999974 334456788999999998

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.42  E-value=9.4e-15  Score=151.38  Aligned_cols=149  Identities=20%  Similarity=0.187  Sum_probs=107.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+...+........ .+|  ++..+. |+||+...+.|.          ..   +
T Consensus        23 g~V~~~~~~~~~~-------~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~----------~~---~   82 (388)
T 3oz6_A           23 GIVWKSIDRRTGE-------VVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLR----------AD---N   82 (388)
T ss_dssp             -CEEEEEETTTCC-------EEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE----------CT---T
T ss_pred             eEEEEEEECCCCC-------EEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEe----------cC---C
Confidence            7788888888888       8999988655432222222 344  567776 999998776651          11   1


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.++++|..++..+++-       ...+...++.++.|++.++.| |..+|+|||||     |+||++.. .+.+|
T Consensus        83 ~~~~~lv~e~~~~~L~~~~~~-------~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk-----p~NIll~~-~~~~k  149 (388)
T 3oz6_A           83 DRDVYLVFDYMETDLHAVIRA-------NILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMK-----PSNILLNA-ECHVK  149 (388)
T ss_dssp             SSCEEEEEECCSEEHHHHHHH-------TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEE
T ss_pred             CCEEEEEecccCcCHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC-----HHHeEEcC-CCCEE
Confidence            123789999999876666532       247788889999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC-----------------------CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-----------------------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-----------------------~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+..                       ....++.+++|++|+||
T Consensus       150 l~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  199 (388)
T 3oz6_A          150 VADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAP  199 (388)
T ss_dssp             ECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCH
T ss_pred             ecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCH
Confidence            9999998621                       12235678999999998

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.40  E-value=3.9e-14  Score=148.82  Aligned_cols=156  Identities=23%  Similarity=0.255  Sum_probs=114.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.+..+|.       .+|+|.+...   ........++|+.++|+||+.+.+.|+..         .+.....-+
T Consensus        68 g~Vy~~~~~~~~~-------~vaiK~~~~~---~~~~~~E~~il~~l~hpniv~l~~~~~~~---------~~~~~~~~~  128 (420)
T 1j1b_A           68 GVVYQAKLCDSGE-------LVAIKKVLQD---KRFKNRELQIMRKLDHCNIVRLRYFFYSS---------GEKKDEVYL  128 (420)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECC---TTSCCHHHHHHHTCCCTTBCCEEEEEEEE---------ETTTTEEEE
T ss_pred             EEEEEEEECCCCc-------EEEEEEeccc---chhHHHHHHHHHHcCCCCccceeeEEecc---------CCCCcceeE
Confidence            6788888877777       8999987542   22222233478999999999876665311         011112236


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecC
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDF  489 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~Df  489 (512)
                      +.++++|..++..++.  ...+.+...+...++.++.|++.+|.| |..+|+|||||     |+||++....+.+|++||
T Consensus       129 ~lv~e~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~NILl~~~~~~~kl~DF  201 (420)
T 1j1b_A          129 NLVLDYVPETVYRVAR--HYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIK-----PQNLLLDPDTAVLKLCDF  201 (420)
T ss_dssp             EEEEECCCEEHHHHHH--HHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCS-----GGGEEEETTTTEEEECCC
T ss_pred             EeehhcccccHHHHHH--HHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----hhhEEEeCCCCeEEeccc
Confidence            7889999876655543  222334568888999999999999999 99999999999     999999866578999999


Q ss_pred             CCCCC-CCCCCccCeeeeeeeccC
Q psy17422        490 GSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       490 Glar~-~~~~~~t~yv~tr~YraP  512 (512)
                      |+++. ........+++|++|+||
T Consensus       202 G~a~~~~~~~~~~~~~~t~~y~aP  225 (420)
T 1j1b_A          202 GSAKQLVRGEPNVSYICSRYYRAP  225 (420)
T ss_dssp             TTCEECCTTCCCCSCCSCTTSCCH
T ss_pred             hhhhhcccCCCceeeeeCCCcCCH
Confidence            99983 334445678999999998

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.40  E-value=4.9e-14  Score=141.90  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=117.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+.............+|  +++.++||||++..+.|.           .++    
T Consensus        19 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------~~~----   76 (317)
T 2pmi_A           19 ATVYKGLNKTTGV-------YVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIH-----------TEN----   76 (317)
T ss_dssp             CEEEEEECSSSCC-------EEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEEC-----------CTT----
T ss_pred             EEEEEEEECCCCc-------EEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEE-----------ECC----
Confidence            6788888888887       8999988654322222222455  688899999998776651           111    


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.++|+|..++..++............+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++
T Consensus        77 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlk-----p~NIl~~~-~~~~kl~  150 (317)
T 2pmi_A           77 KLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLK-----PQNLLINK-RGQLKLG  150 (317)
T ss_dssp             EEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEEEC
T ss_pred             eEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----hHHeEEcC-CCCEEEC
Confidence            37899999998888887655433333457888999999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |||+++..  +.......++|.+|+||
T Consensus       151 Dfg~~~~~~~~~~~~~~~~~t~~y~aP  177 (317)
T 2pmi_A          151 DFGLARAFGIPVNTFSSEVVTLWYRAP  177 (317)
T ss_dssp             CCSSCEETTSCCCCCCCCCSCCTTCCH
T ss_pred             cCccceecCCCcccCCCCcccccccCc
Confidence            99998732  33445677899999998

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.39  E-value=2.7e-14  Score=147.26  Aligned_cols=151  Identities=24%  Similarity=0.288  Sum_probs=113.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC-CCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE-GNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~-~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|.          ... ...
T Consensus        39 g~V~~a~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~----------~~~~~~~  101 (367)
T 1cm8_A           39 GAVCSAVDGRTGA-------KVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFT----------PDETLDD  101 (367)
T ss_dssp             -CEEEEEETTTCC-------EEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEEC----------SCSSTTT
T ss_pred             eEEEEEEECCCCC-------EEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEe----------cCCcccc
Confidence            6788888888887       8999998665433222222 344  688899999998877662          110 011


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.++++|..++..+++-       ...+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       102 ~~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll~~-~~~~k  168 (367)
T 1cm8_A          102 FTDFYLVMPFMGTDLGKLMKH-------EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLK-----PGNLAVNE-DCELK  168 (367)
T ss_dssp             CCCCEEEEECCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEE
T ss_pred             CceEEEEEecCCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcC-----HHHEEEcC-CCCEE
Confidence            123688999997777666542       247888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++... ...+.+++|++|+||
T Consensus       169 l~Dfg~a~~~~-~~~~~~~~t~~y~aP  194 (367)
T 1cm8_A          169 ILDFGLARQAD-SEMTGYVVTRWYRAP  194 (367)
T ss_dssp             ECCCTTCEECC-SSCCSSCSCGGGCCT
T ss_pred             EEeeecccccc-cccCcCcCCCCcCCH
Confidence            99999998533 235678999999998

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.36  E-value=1.4e-13  Score=140.53  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=112.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+.+..  .........+|  +++.++||||+.....|           ...+  
T Consensus        19 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~-----------~~~~--   78 (337)
T 1o6l_A           19 GKVILVREKATGR-------YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----------QTHD--   78 (337)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEE-----------EeCC--
Confidence            6778888888887       88999876532  22222222344  78889999999876666           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|++|.. ++..++.      .....+...++.++.|++.+|.+ |.++|+|||||     |+||++.. .+.+
T Consensus        79 --~~~lv~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~g~v  144 (337)
T 1o6l_A           79 --RLCFVMEYANGGELFFHLS------RERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK-----LENLMLDK-DGHI  144 (337)
T ss_dssp             --EEEEEEECCTTCBHHHHHH------HHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSCE
T ss_pred             --EEEEEEeCCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCC-----HHHEEECC-CCCE
Confidence              37899999975 5544443      33457888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.  ........++||+.|+||
T Consensus       145 kL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  174 (337)
T 1o6l_A          145 KITDFGLCKEGISDGATMKTFCGTPEYLAP  174 (337)
T ss_dssp             EECCCTTCBCSCCTTCCBCCCEECGGGCCG
T ss_pred             EEeeccchhhcccCCCcccccccChhhCCh
Confidence            9999999974  233456678999999998

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.34  E-value=9.7e-14  Score=137.57  Aligned_cols=149  Identities=22%  Similarity=0.259  Sum_probs=113.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...+   
T Consensus        16 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~---   74 (292)
T 3o0g_A           16 GTVFKAKNRETHE-------IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVL-----------HSDK---   74 (292)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------EETT---
T ss_pred             eEEEEEEECCCCc-------eEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEE-----------EeCC---
Confidence            6788888888887       8999988654433333333 345  68889999999876655           1211   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++|+|..++..++.     ......+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        75 -~~~lv~e~~~~~l~~~~~-----~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dik-----p~Nil~~~-~~~~kl  142 (292)
T 3o0g_A           75 -KLTLVFEFCDQDLKKYFD-----SCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK-----PQNLLINR-NGELKL  142 (292)
T ss_dssp             -EEEEEEECCSEEHHHHHH-----HTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCEEE
T ss_pred             -EEEEEEecCCCCHHHHHH-----hCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcC-CCCEEE
Confidence             278999999877655543     223458889999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  +....+..++|.+|+||
T Consensus       143 ~Dfg~~~~~~~~~~~~~~~~~t~~y~aP  170 (292)
T 3o0g_A          143 ANFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_dssp             CCCTTCEECCSCCSCCCSCCSCGGGCCH
T ss_pred             eecccceecCCccccccCCccccCCcCh
Confidence            999999732  33445677899999998

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.33  E-value=1.1e-13  Score=142.08  Aligned_cols=148  Identities=19%  Similarity=0.103  Sum_probs=105.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  .........+|  ++..+ +||||+.+...|           ...+ 
T Consensus        37 g~V~~~~~~~~~~-------~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----------~~~~-   97 (353)
T 3txo_A           37 GKVMLARVKETGD-------LYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----------QTPD-   97 (353)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----------ECSS-
T ss_pred             EEEEEEEEcCCCC-------EEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----------EeCC-
Confidence            6788888888887       88999876432  11222222333  56665 799999876665           1211 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..++.      .....+...++.++.|++.+|.+ |..+|+|||||     |+||++.. .+.
T Consensus        98 ---~~~lv~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk-----p~NILl~~-~g~  162 (353)
T 3txo_A           98 ---RLFFVMEFVNGGDLMFHIQ------KSRRFDEARARFYAAEIISALMFLHDKGIIYRDLK-----LDNVLLDH-EGH  162 (353)
T ss_dssp             ---EEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSC
T ss_pred             ---EEEEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCC-----HHHEEECC-CCC
Confidence               27899999985 6555543      33457889999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......++||+.|+||
T Consensus       163 ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  193 (353)
T 3txo_A          163 CKLADFGMCKEGICNGVTTATFCGTPDYIAP  193 (353)
T ss_dssp             EEECCCTTCBCSCC---------CCGGGCCH
T ss_pred             EEEccccceeecccCCccccccCCCcCeECh
Confidence            999999999842  23345678999999998

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.33  E-value=2.2e-13  Score=142.30  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=109.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC--CCCchHHHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP--TTVPSSVAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~--~~i~~~~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+....  ..+..-.+|  ++.. .+||||+++...|           ...+ 
T Consensus        66 G~V~~~~~~~~~~-------~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----------~~~~-  126 (396)
T 4dc2_A           66 AKVLLVRLKKTDR-------IYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----------QTES-  126 (396)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----------ECSS-
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----------EECC-
Confidence            5677777777776       8899988765322  222222333  4544 4899999877666           1221 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..++.      .....+...++.++.|++.+|.+ |..+|+|||||     |+||++.. .+.
T Consensus       127 ---~~~lV~E~~~gg~L~~~l~------~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLK-----p~NILl~~-~g~  191 (396)
T 4dc2_A          127 ---RLFFVIEYVNGGDLMFHMQ------RQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK-----LDNVLLDS-EGH  191 (396)
T ss_dssp             ---EEEEEEECCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSC
T ss_pred             ---EEEEEEEcCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCC-----HHHEEECC-CCC
Confidence               28899999985 5544443      33457889999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.  ........++||+.|+||
T Consensus       192 ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aP  222 (396)
T 4dc2_A          192 IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAP  222 (396)
T ss_dssp             EEECCCTTCBCCCCTTCCBCCCCBCGGGCCH
T ss_pred             EEEeecceeeecccCCCccccccCCcccCCc
Confidence            99999999984  234456678999999998

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.32  E-value=3.6e-13  Score=139.25  Aligned_cols=163  Identities=25%  Similarity=0.286  Sum_probs=116.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhh-------------
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVK-------------  397 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk-------------  397 (512)
                      +.|+++.+..+|.       .+|+|.+...   ........++++.++|+||++..+.|+.-.....             
T Consensus        21 g~V~~a~~~~~~~-------~vAiK~~~~~---~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~   90 (383)
T 3eb0_A           21 GIVCEVFDIESGK-------RFALKKVLQD---PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLG   90 (383)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECC---TTSCCHHHHHHTTCCCTTBCCEEEEEEEC------------------
T ss_pred             EEEEEEEECCCCC-------EEEEEEEecC---cchHHHHHHHHHHcCCCCccchhheeeecCccccccccccccccccc
Confidence            6788888888888       8999987542   2222223347899999999987776642211000             


Q ss_pred             ------------hhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHH
Q psy17422        398 ------------DFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQ  464 (512)
Q Consensus       398 ------------~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrd  464 (512)
                                  .....  .+..-++.+|++|..++..++.  ...+.....+...++.++.|++.++.+ |..+|+|+|
T Consensus        91 ~~~~~~~~~~~~~~~~~--~~~~~~~lv~e~~~~~L~~~l~--~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~D  166 (383)
T 3eb0_A           91 GKNNGVNNHHKSVIVNP--SQNKYLNVIMEYVPDTLHKVLK--SFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRD  166 (383)
T ss_dssp             ---------------------CCEEEEEECCCSEEHHHHHH--HHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSC
T ss_pred             ccccccccccccccccC--CCceEEEEEEecCCccHHHHHH--HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCc
Confidence                        00000  0111267899999877666653  333445568899999999999999999 999999999


Q ss_pred             HHhhccccccccccCCCCeEEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        465 VKLFCRNASFIHVNESKLVLKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       465 IK~Fc~n~~nIll~~~~~~~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      ||     |+||++....+.+|++|||+++. ........+++|++|+||
T Consensus       167 ik-----p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aP  210 (383)
T 3eb0_A          167 IK-----PQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAP  210 (383)
T ss_dssp             CC-----GGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCH
T ss_pred             cC-----HHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCH
Confidence            99     99999975568999999999973 344456678999999998

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.32  E-value=2e-13  Score=142.09  Aligned_cols=148  Identities=18%  Similarity=0.163  Sum_probs=110.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+.+..  ....+..-.+|  +|..++||||+.....|           ...+  
T Consensus        29 G~V~~~~~~~~~~-------~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-----------~~~~--   88 (384)
T 4fr4_A           29 GKVCIVQKNDTKK-------MYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSF-----------QDEE--   88 (384)
T ss_dssp             CCEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EeCC--
Confidence            5677777777776       78998775432  12222222344  78889999999876655           1211  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|.. ++..++      +.....+...++.++.|++.++.| |..+|+|||||     |+||++.. .+.+
T Consensus        89 --~~~lv~e~~~gg~L~~~l------~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlk-----p~NIll~~-~g~v  154 (384)
T 4fr4_A           89 --DMFMVVDLLLGGDLRYHL------QQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMK-----PDNILLDE-HGHV  154 (384)
T ss_dssp             --EEEEEECCCTTEEHHHHH------HTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCE
T ss_pred             --EEEEEEecCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCc-----HHHeEECC-CCCE
Confidence              37899999975 444443      334458889999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. .....+.++||+.|+||
T Consensus       155 kL~DFG~a~~~~~~~~~~~~~gt~~Y~aP  183 (384)
T 4fr4_A          155 HITDFNIAAMLPRETQITTMAGTKPYMAP  183 (384)
T ss_dssp             EECCCTTCEECCTTCCBCCCCSCGGGCCG
T ss_pred             EEeccceeeeccCCCceeccCCCccccCC
Confidence            99999999743 34456788999999998

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.31  E-value=2.6e-13  Score=141.22  Aligned_cols=143  Identities=24%  Similarity=0.226  Sum_probs=103.7

Q ss_pred             HhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQL  430 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~i  430 (512)
                      .+|+|++..   .........++++.++||||++..+.|+.         ........-++.++++|..++...+..  .
T Consensus        66 ~~aikk~~~---~~~~~~~E~~il~~l~h~niv~l~~~~~~---------~~~~~~~~~~~lv~e~~~~~l~~~~~~--~  131 (394)
T 4e7w_A           66 EVAIKKVLQ---DKRFKNRELQIMRIVKHPNVVDLKAFFYS---------NGDKKDEVFLNLVLEYVPETVYRASRH--Y  131 (394)
T ss_dssp             EEEEEEEEC---CTTSCCHHHHHHHTCCCTTBCCEEEEEEE---------ESSSSSCEEEEEEEECCSEEHHHHHHH--H
T ss_pred             eEEEEEEec---CcchHHHHHHHHHhCCCCCcceEEEEEEe---------cCCCCCceEEEEEeeccCccHHHHHHH--H
Confidence            478887743   22333333447899999999987766631         111112223678999998766444332  2


Q ss_pred             hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC-CCCCCccCeeeeee
Q psy17422        431 YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW-SHENEITPYLVSRF  508 (512)
Q Consensus       431 y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~-~~~~~~t~yv~tr~  508 (512)
                      .+.+...+...++.++.|++.++.| |..+|+|||||     |+||++....+.+|++|||+++. ........+++|++
T Consensus       132 ~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~  206 (394)
T 4e7w_A          132 AKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIK-----PQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRY  206 (394)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGG
T ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC-----HHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcC
Confidence            2234457888999999999999999 99999999999     99999975568999999999973 33445667899999


Q ss_pred             eccC
Q psy17422        509 YRAP  512 (512)
Q Consensus       509 YraP  512 (512)
                      |+||
T Consensus       207 y~aP  210 (394)
T 4e7w_A          207 YRAP  210 (394)
T ss_dssp             GCCH
T ss_pred             ccCH
Confidence            9998

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.30  E-value=2.6e-13  Score=138.84  Aligned_cols=148  Identities=16%  Similarity=0.125  Sum_probs=109.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC--CchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT--VPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~--i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+......  ...-.+|  ++..+ +||||++....|           ...+ 
T Consensus        23 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----------~~~~-   83 (345)
T 3a8x_A           23 AKVLLVRLKKTDR-------IYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----------QTES-   83 (345)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE-----------ECSS-
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE-----------EeCC-
Confidence            5677777777776       889998875432111  1111223  56655 899999877665           1211 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..++.      .....+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.
T Consensus        84 ---~~~lv~e~~~gg~L~~~l~------~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~g~  148 (345)
T 3a8x_A           84 ---RLFFVIEYVNGGDLMFHMQ------RQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK-----LDNVLLDS-EGH  148 (345)
T ss_dssp             ---EEEEEECCCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSC
T ss_pred             ---EEEEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----HHHEEECC-CCC
Confidence               38899999974 6655553      23457888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.  ........++||++|+||
T Consensus       149 ~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  179 (345)
T 3a8x_A          149 IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAP  179 (345)
T ss_dssp             EEECCGGGCBCSCCTTCCBCCCCSCGGGCCH
T ss_pred             EEEEeccccccccCCCCcccccCCCccccCc
Confidence            99999999974  234456678999999998

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.30  E-value=2.1e-13  Score=144.11  Aligned_cols=148  Identities=15%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+....  .........+|  +++.++||||+.....|           ...+  
T Consensus       162 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~-----------~~~~--  221 (446)
T 4ejn_A          162 GKVILVKEKATGR-------YYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSF-----------QTHD--  221 (446)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEE-----------EETT--
T ss_pred             EEEEEEEEcCCCC-------EEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEE-----------eeCC--
Confidence            5677777777777       89999876532  12222222344  57788999999776655           1211  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCe
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                        .++.+|++|.. ++..++.      .....+...+..++.|++.+|.| |. .+|+|||||     |+||++.. .+.
T Consensus       222 --~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlk-----p~NIll~~-~~~  287 (446)
T 4ejn_A          222 --RLCFVMEYANGGELFFHLS------RERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLK-----LENLMLDK-DGH  287 (446)
T ss_dssp             --EEEEEECCCSSCBHHHHHH------HHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC-----GGGEEECS-SSC
T ss_pred             --EEEEEEeeCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCC-----HHHEEECC-CCC
Confidence              27899999985 5444442      33457888999999999999999 98 999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......++||++|+||
T Consensus       288 ~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aP  318 (446)
T 4ejn_A          288 IKITDFGLCKEGIKDGATMKTFCGTPEYLAP  318 (446)
T ss_dssp             EEECCCCCCCTTCC-----CCSSSCGGGCCH
T ss_pred             EEEccCCCceeccCCCcccccccCCccccCH
Confidence            999999999842  33446678999999998

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.30  E-value=1.3e-13  Score=142.39  Aligned_cols=152  Identities=24%  Similarity=0.263  Sum_probs=99.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||+...+.|..- ..+    +    ..
T Consensus        43 g~V~~a~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~----~----~~  106 (367)
T 2fst_X           43 GSVCAAFDTKTGL-------RVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA-RSL----E----EF  106 (367)
T ss_dssp             CCEEEEEETTTTE-------EEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSC-SSG----G----GC
T ss_pred             eEEEEEEECCCCC-------EEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC-Ccc----c----cC
Confidence            6777887777777       8999988654332211122 344  68889999999887765210 000    0    01


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.++++|..++..+++-       ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus       107 ~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlk-----p~NIll~~-~~~~kL  173 (367)
T 2fst_X          107 NDVYLVTHLMGADLNNIVKC-------QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLK-----PSNLAVNE-DCELKI  173 (367)
T ss_dssp             CCCEEEEECCCEECC------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TCCEEE
T ss_pred             CeEEEEecccCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----HhhEEECC-CCCEEE
Confidence            12678888887777666542       247888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.... ..+.+++|++|+||
T Consensus       174 ~DFG~a~~~~~-~~~~~~~t~~y~aP  198 (367)
T 2fst_X          174 LDFGLARHTAD-EMTGYVATRWYRAP  198 (367)
T ss_dssp             CC----------------CCCTTCCH
T ss_pred             eeccccccccc-cCCCcCcCcCccCh
Confidence            99999985432 35678999999998

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.30  E-value=2.9e-13  Score=135.93  Aligned_cols=148  Identities=23%  Similarity=0.281  Sum_probs=105.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++ +|.       .+|+|.+............ .+|  +++.++||||++..+.|           ..+.   
T Consensus        35 g~V~~~~~~-~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~---   92 (311)
T 3niz_A           35 GVVYKAKDS-QGR-------IVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI-----------HSER---   92 (311)
T ss_dssp             CEEEEEEET-TSC-------EEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CCSS---
T ss_pred             eEEEEEEEC-CCC-------EEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEE-----------ccCC---
Confidence            456666553 244       7899987654333333333 344  68889999999876655           1221   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|..++..++.     ..+...+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        93 -~~~lv~e~~~~~l~~~~~-----~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dik-----p~NIl~~~-~~~~kl  160 (311)
T 3niz_A           93 -CLTLVFEFMEKDLKKVLD-----ENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLK-----PQNLLINS-DGALKL  160 (311)
T ss_dssp             -CEEEEEECCSEEHHHHHH-----TCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEEE
T ss_pred             -EEEEEEcCCCCCHHHHHH-----hccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc-----hHhEEECC-CCCEEE
Confidence             278999999877655543     223347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  +....+..++|++|+||
T Consensus       161 ~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  188 (311)
T 3niz_A          161 ADFGLARAFGIPVRSYTHEVVTLWYRAP  188 (311)
T ss_dssp             CCCTTCEETTSCCC---CCCCCCTTCCH
T ss_pred             ccCcCceecCCCcccccCCcccCCcCCH
Confidence            999998732  33445667899999998

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.29  E-value=2.7e-13  Score=143.42  Aligned_cols=149  Identities=13%  Similarity=0.098  Sum_probs=108.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCc--hHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVP--SSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~--~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  ......  ....+++..++||||+.+...|           ...+  
T Consensus        88 G~V~~~~~~~~~~-------~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~-----------~~~~--  147 (437)
T 4aw2_A           88 GEVAVVKLKNADK-------VFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF-----------QDDN--  147 (437)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE-----------ECSS--
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-----------eeCC--
Confidence            5677777776666       78999875421  111211  2233478889999999876665           1211  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+||+|. .++..++.-     .+...+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus       148 --~~~lV~Ey~~gg~L~~~l~~-----~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLK-----p~NILl~~-~g~v  214 (437)
T 4aw2_A          148 --NLYLVMDYYVGGDLLTLLSK-----FEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIK-----PDNILMDM-NGHI  214 (437)
T ss_dssp             --EEEEEECCCTTCBHHHHHHT-----TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCE
T ss_pred             --EEEEEEecCCCCcHHHHHHH-----ccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccC-----HHHeeEcC-CCCE
Confidence              2889999996 566666532     13457889999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCC-CC--CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HE--NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~--~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. ..  ...+..+||++|+||
T Consensus       215 kL~DFGla~~~~~~~~~~~~~~~GT~~Y~AP  245 (437)
T 4aw2_A          215 RLADFGSCLKLMEDGTVQSSVAVGTPDYISP  245 (437)
T ss_dssp             EECCCTTCEECCTTSCEECCSCCSCGGGCCH
T ss_pred             EEcchhhhhhcccCCCcccccccCCcCeeCh
Confidence            99999999732 21  123457999999998

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.29  E-value=1.5e-13  Score=150.14  Aligned_cols=111  Identities=16%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +|+.+ .|+||+++-+.|           +.++.    ++.+|+++.+.+     |.+..++....+..   +++.|++.
T Consensus       294 ~l~~~~~~~~i~~~~~~~-----------ed~~~----~yLVMEyv~G~~-----L~d~i~~~~~l~~~---~I~~QIl~  350 (569)
T 4azs_A          294 FLTQPPAGFDAPAVLAHG-----------ENAQS----GWLVMEKLPGRL-----LSDMLAAGEEIDRE---KILGSLLR  350 (569)
T ss_dssp             HHHSCCTTCCCCCEEEEE-----------ECSSE----EEEEEECCCSEE-----HHHHHHTTCCCCHH---HHHHHHHH
T ss_pred             HHHhcCCCCCeeEEEEEE-----------EECCE----EEEEEecCCCCc-----HHHHHHhCCCCCHH---HHHHHHHH
Confidence            67777 689999776665           33333    899999999643     44444444556654   47899999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|.| |.++|+|||||     |+||++.. .+.+|++|||+|+...  ....+..|||++|+||
T Consensus       351 AL~ylH~~GIIHRDIK-----PeNILL~~-dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAP  408 (569)
T 4azs_A          351 SLAALEKQGFWHDDVR-----PWNVMVDA-RQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVN  408 (569)
T ss_dssp             HHHHHHHTTCEESCCC-----GGGEEECT-TSCEEECCCTTEESCC---CCSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCceeccCc-----hHhEEECC-CCCEEEeecccCeeCCCCCccccCceechhhccH
Confidence            9999 99999999999     99999975 4899999999998432  3345678999999987

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.28  E-value=3.8e-13  Score=137.75  Aligned_cols=148  Identities=18%  Similarity=0.109  Sum_probs=109.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  .........+|  ++.. .+||||++....|           ...+ 
T Consensus        31 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~-----------~~~~-   91 (345)
T 1xjd_A           31 GKVFLAEFKKTNQ-------FFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF-----------QTKE-   91 (345)
T ss_dssp             SEEEEEEETTTTE-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----------ECSS-
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEE-----------EeCC-
Confidence            6778888887777       88999876532  12222222333  5554 4899999876665           1211 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|+++.. ++..++.      .....+...+..++.|++.++.+ |.++|+|||||     |+||++.. .+.
T Consensus        92 ---~~~lv~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~g~  156 (345)
T 1xjd_A           92 ---NLFFVMEYLNGGDLMYHIQ------SCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLK-----LDNILLDK-DGH  156 (345)
T ss_dssp             ---EEEEEEECCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSC
T ss_pred             ---EEEEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC-----hhhEEECC-CCC
Confidence               28899999974 6655553      23457888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......++||+.|+||
T Consensus       157 vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  187 (345)
T 1xjd_A          157 IKIADFGMCKENMLGDAKTNTFCGTPDYIAP  187 (345)
T ss_dssp             EEECCCTTCBCCCCTTCCBCCCCSCGGGCCH
T ss_pred             EEEeEChhhhhcccCCCcccCCCCCcccCCh
Confidence            999999999743  23345678999999998

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.27  E-value=7.2e-13  Score=141.52  Aligned_cols=149  Identities=16%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...    
T Consensus        36 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----------~~~----   93 (486)
T 3mwu_A           36 GEVLKCKDRITQQ-------EYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEIL-----------EDS----   93 (486)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECS----
T ss_pred             EEEEEEEECCCCC-------EEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEE-----------EcC----
Confidence            7788888888887       8999988654332222233 445  78999999999776655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~  483 (512)
                      -.++.++++|.. ++..++      ......+...+..++.|++.++.| |..+|+|+|||     |+||++...  .+.
T Consensus        94 ~~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk-----p~Nil~~~~~~~~~  162 (486)
T 3mwu_A           94 SSFYIVGELYTGGELFDEI------IKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLK-----PENILLESKEKDCD  162 (486)
T ss_dssp             SEEEEEECCCCSCBHHHHH------HHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEESSSSTTCC
T ss_pred             CEEEEEEEcCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCc-----hHHEEEecCCCCCC
Confidence            137889999975 544444      233457888999999999999999 99999999999     999999532  357


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. ........++|++|+||
T Consensus       163 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  192 (486)
T 3mwu_A          163 IKIIDFGLSTCFQQNTKMKDRIGTAYYIAP  192 (486)
T ss_dssp             EEECSCSCTTTBCCC----CCTTGGGGCCG
T ss_pred             EEEEECCcCeECCCCCccCCCcCCCCCCCH
Confidence            999999999743 33445677899999998

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.27  E-value=3.4e-13  Score=142.88  Aligned_cols=149  Identities=17%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...+   
T Consensus        25 g~V~~~~~~~~~~-------~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----------~~~~---   83 (444)
T 3soa_A           25 SVVRRCVKVLAGQ-------EYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI-----------SEEG---   83 (444)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE-----------ECSS---
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE-----------EECC---
Confidence            7788888888887       8888877542211111111 233  68889999999876655           2221   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--CCCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--SKLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--~~~~  483 (512)
                       .++.++++|.. ++..++      ..+...+...+..++.|++.++.| |..+|+|||||     |+||++..  ..+.
T Consensus        84 -~~~lv~E~~~gg~L~~~i------~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlK-----p~NIll~~~~~~~~  151 (444)
T 3soa_A           84 -HHYLIFDLVTGGELFEDI------VAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLK-----PENLLLASKLKGAA  151 (444)
T ss_dssp             -EEEEEECCCBCCBHHHHH------HHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS-----STTEEESBSSTTCC
T ss_pred             -EEEEEEEeCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEEeccCCCCc
Confidence             27889999975 554444      334457888999999999999999 99999999999     99999974  2368


Q ss_pred             EEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...  ......++||++|+||
T Consensus       152 vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~AP  182 (444)
T 3soa_A          152 VKLADFGLAIEVEGEQQAWFGFAGTPGYLSP  182 (444)
T ss_dssp             EEECCCSSCBCCCTTCCBCCCSCSCGGGCCH
T ss_pred             EEEccCceeEEecCCCceeecccCCcccCCH
Confidence            9999999997432  3345678999999998

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.27  E-value=5.4e-13  Score=138.14  Aligned_cols=148  Identities=17%  Similarity=0.111  Sum_probs=107.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.++.       .+|+|.+.+...  ........+|   +++.++||||+++...|.           ..+ 
T Consensus        52 g~V~~~~~~~~~~-------~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~-----------~~~-  112 (373)
T 2r5t_A           52 GKVLLARHKAEEV-------FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ-----------TAD-  112 (373)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEE-----------CSS-
T ss_pred             eEEEEEEEcCCCC-------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEE-----------eCC-
Confidence            6677777777776       789998865432  1111111233   356788999998766661           111 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..++.      .....+...++.++.|++.+|.+ |..+|+|||||     |+||++.. .+.
T Consensus       113 ---~~~lv~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk-----p~NIll~~-~g~  177 (373)
T 2r5t_A          113 ---KLYFVLDYINGGELFYHLQ------RERCFLEPRARFYAAEIASALGYLHSLNIVYRDLK-----PENILLDS-QGH  177 (373)
T ss_dssp             ---EEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSC
T ss_pred             ---EEEEEEeCCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----HHHEEECC-CCC
Confidence               38899999985 5555543      23347788899999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.  ........++||+.|+||
T Consensus       178 ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  208 (373)
T 2r5t_A          178 IVLTDFGLCKENIEHNSTTSTFCGTPEYLAP  208 (373)
T ss_dssp             EEECCCCBCGGGBCCCCCCCSBSCCCCCCCH
T ss_pred             EEEeeCccccccccCCCccccccCCccccCH
Confidence            99999999974  233445678999999998

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.27  E-value=6.2e-13  Score=136.72  Aligned_cols=146  Identities=18%  Similarity=0.111  Sum_probs=101.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+....   ..... .+|  +++.++||||++..+.|.           ..+   
T Consensus        34 g~V~~~~~~~~~~-------~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----------~~~---   89 (361)
T 3uc3_A           34 GVARLMRDKLTKE-------LVAVKYIERGA---AIDENVQREIINHRSLRHPNIVRFKEVIL-----------TPT---   89 (361)
T ss_dssp             SSEEEEEETTTCC-------EEEEEEEESST---TSCHHHHHHHHHHHHCCCTTBCCEEEEEE-----------CSS---
T ss_pred             EEEEEEEECCCCc-------EEEEEEEecCc---cccHHHHHHHHHHHhCCCCCCCcEEEEEe-----------eCC---
Confidence            6677888887777       89999876432   22233 344  688899999998766651           111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC-CCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES-KLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~-~~~~  484 (512)
                       .++.++++|.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++... .+.+
T Consensus        90 -~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlk-----p~Nill~~~~~~~~  157 (361)
T 3uc3_A           90 -HLAIIMEYASGGELYERIC------NAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLK-----LENTLLDGSPAPRL  157 (361)
T ss_dssp             -EEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCC-----GGGEEECSSSSCCE
T ss_pred             -EEEEEEEeCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEEcCCCCceE
Confidence             27899999964 5555543      33457888999999999999999 99999999999     999999643 2359


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. ........++|++|+||
T Consensus       158 kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  186 (361)
T 3uc3_A          158 KICDFGYSKSSVLHSQPKSTVGTPAYIAP  186 (361)
T ss_dssp             EECCCCCC---------------CTTSCH
T ss_pred             EEeecCccccccccCCCCCCcCCCCcCCh
Confidence            99999999732 23334567899999998

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.26  E-value=3.1e-13  Score=133.78  Aligned_cols=148  Identities=20%  Similarity=0.262  Sum_probs=104.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+ .+|.       .+|+|.+............ .+|  +++.++||||++..+.|.           ..+   
T Consensus        16 g~V~~~~~-~~~~-------~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~---   73 (288)
T 1ob3_A           16 GVVYKAQN-NYGE-------TFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----------TKK---   73 (288)
T ss_dssp             EEEEEEEE-TTSC-------EEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----------CSS---
T ss_pred             EEEEEEEc-CCCC-------EEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----------cCC---
Confidence            56677665 4555       7899987654333333344 455  688899999998766551           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.+++++..++..++...     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        74 -~~~lv~e~~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl  141 (288)
T 1ob3_A           74 -RLVLVFEHLDQDLKKLLDVC-----EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK-----PQNLLINR-EGELKI  141 (288)
T ss_dssp             -CEEEEEECCSEEHHHHHHTS-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSCEEE
T ss_pred             -eEEEEEEecCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEEcC-CCCEEE
Confidence             27889999987766665421     2347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.  .+....+..++|++|+||
T Consensus       142 ~Dfg~~~~~~~~~~~~~~~~~t~~y~aP  169 (288)
T 1ob3_A          142 ADFGLARAFGIPVRKYTHEIVTLWYRAP  169 (288)
T ss_dssp             CCTTHHHHHCC---------CCCTTCCH
T ss_pred             eECccccccCccccccccccccccccCc
Confidence            99999863  223345667889999998

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.26  E-value=1.1e-12  Score=136.74  Aligned_cols=153  Identities=17%  Similarity=0.214  Sum_probs=106.4

Q ss_pred             cchhhhccc--cCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKD--ENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~--~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++  .++.       .+|+|.+..    ...... .+|  +|+.++||||+...+.|.          ..   
T Consensus        35 g~Vy~~~~~~~~~~~-------~vaiK~~~~----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~----------~~---   90 (405)
T 3rgf_A           35 GHVYKAKRKDGKDDK-------DYALKQIEG----TGISMSACREIALLRELKHPNVISLQKVFL----------SH---   90 (405)
T ss_dssp             -EEEEEEESSSSCCC-------CEEEEECSS----SSCCHHHHHHHHHHHHCCCTTBCCCCEEEE----------ET---
T ss_pred             eEEEEEEEccCCCCe-------EEEEEEECC----CCCCHHHHHHHHHHHhcCCCCeeeEeeEEe----------cC---
Confidence            778888755  3455       789998753    233333 455  789999999998776662          11   


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhh---ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc---
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRD---QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN---  478 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~---ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~---  478 (512)
                      ....++.+++++..++..++........   ....+...++.++.|++.+|.| |..+|+|+|||     |+||++.   
T Consensus        91 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlk-----p~NIll~~~~  165 (405)
T 3rgf_A           91 ADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLK-----PANILVMGEG  165 (405)
T ss_dssp             TTTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECCSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcC-----HHHeEEecCC
Confidence            1123788999999888888765443211   1237888999999999999999 99999999999     9999993   


Q ss_pred             CCCCeEEEecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        479 ESKLVLKLCDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~~~~~~Kl~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      ...+.+|++|||+++...     ......+++|++|+||
T Consensus       166 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aP  204 (405)
T 3rgf_A          166 PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP  204 (405)
T ss_dssp             TTTTCEEECCTTCCC----------------CCCTTCCH
T ss_pred             CCCCcEEEEECCCceecCCCCcccccCCCceecCcccCc
Confidence            234789999999997422     1335678999999998

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.26  E-value=2.8e-13  Score=137.02  Aligned_cols=149  Identities=18%  Similarity=0.220  Sum_probs=102.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...+   
T Consensus        48 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~---  106 (329)
T 3gbz_A           48 GEVYKAIDTVTNE-------TVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVI-----------HHNH---  106 (329)
T ss_dssp             SEEEEEEETTTTE-------EEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEE-----------EETT---
T ss_pred             eEEEEEEECCCCc-------eEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEE-----------ecCC---
Confidence            5677777777776       8999988654333333233 344  68889999999776655           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC----CCC
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE----SKL  482 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~----~~~  482 (512)
                       .++.++|++..++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++..    ..+
T Consensus       107 -~~~lv~e~~~~~L~~~~~------~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~~  174 (329)
T 3gbz_A          107 -RLHLIFEYAENDLKKYMD------KNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLK-----PQNLLLSVSDASETP  174 (329)
T ss_dssp             -EEEEEEECCSEEHHHHHH------HCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEEEC-----CC
T ss_pred             -EEEEEEecCCCCHHHHHh------hcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCC-----HHHEEEecCCCCccc
Confidence             278899999877666653      33357888999999999999999 99999999999     99999952    235


Q ss_pred             eEEEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++.  .+....+..++|.+|+||
T Consensus       175 ~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  206 (329)
T 3gbz_A          175 VLKIGDFGLARAFGIPIRQFTHEIITLWYRPP  206 (329)
T ss_dssp             EEEECCTTHHHHHC-----------CCTTCCH
T ss_pred             eEEECcCCCccccCCcccccCCCcCCccccCH
Confidence            699999999873  233345667889999998

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.26  E-value=8.2e-13  Score=136.12  Aligned_cols=149  Identities=17%  Similarity=0.200  Sum_probs=112.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC----CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT----VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~----i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++.+|.       .+|+|.+........    .... .+|  +|+.++||||+...+.|           ...
T Consensus        26 g~V~~~~~~~~~~-------~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----------~~~   87 (361)
T 2yab_A           26 AIVKKCREKSTGL-------EYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY-----------ENR   87 (361)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECS
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE-----------EeC
Confidence            6788888888888       889998875432211    1122 244  68889999999877665           111


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                          -.++.+++++. .++..++      ..+...+...+..++.|++.++.| |..+|+|+|||     |+||++....
T Consensus        88 ----~~~~lv~e~~~gg~L~~~l------~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlk-----p~NIll~~~~  152 (361)
T 2yab_A           88 ----TDVVLILELVSGGELFDFL------AQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLK-----PENIMLLDKN  152 (361)
T ss_dssp             ----SEEEEEEECCCSCBHHHHH------TTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESCTT
T ss_pred             ----CEEEEEEEcCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEEeCCC
Confidence                13789999996 5665554      334457888999999999999999 99999999999     9999997543


Q ss_pred             C---eEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 L---VLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~---~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      .   .+|++|||+++.. ........+||+.|+||
T Consensus       153 ~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aP  187 (361)
T 2yab_A          153 IPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAP  187 (361)
T ss_dssp             SSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCH
T ss_pred             CCccCEEEEecCCceEcCCCCccccCCCCccEECc
Confidence            2   7999999999743 33445678899999998

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.26  E-value=1.6e-12  Score=132.44  Aligned_cols=158  Identities=25%  Similarity=0.323  Sum_probs=112.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+...  ........++  .+..++||||++..+.|+..        ........
T Consensus        37 g~V~~~~~~~~~~-------~vavK~~~~~--~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~--------~~~~~~~~   99 (360)
T 3e3p_A           37 GTVQLGKEKSTGM-------SVAIKKVIQD--PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTL--------GERDRRDI   99 (360)
T ss_dssp             --CEEEEETTTCC-------EEEEEEEECC--TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEE--------CSSCTTCE
T ss_pred             eEEEEEEECCCCC-------EEEEEEEecC--ccccHHHHHHHHHHHhcCCCCcccHHHhhhcc--------ccccccce
Confidence            7788888888887       8999987432  1222233333  35667999999877665311        00111222


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-C--CCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P--SSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h--~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .++.++++|..++...+  ...+......+...+..++.|++.++.+ |  ..+|+|+|||     |+||++....+.+|
T Consensus       100 ~~~lv~e~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlk-----p~NIll~~~~~~~k  172 (360)
T 3e3p_A          100 YLNVVMEYVPDTLHRCC--RNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIK-----PHNVLVNEADGTLK  172 (360)
T ss_dssp             EEEEEEECCSCBHHHHH--HHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCC-----GGGEEEETTTTEEE
T ss_pred             eEEEEeecccccHHHHH--HHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCC-----HHHEEEeCCCCcEE
Confidence            36789999998765544  3444555667888999999999999999 8  9999999999     99999986568999


Q ss_pred             EecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.. .......+++|++|+||
T Consensus       173 l~Dfg~a~~~~~~~~~~~~~gt~~y~aP  200 (360)
T 3e3p_A          173 LCDFGSAKKLSPSEPNVAYICSRYYRAP  200 (360)
T ss_dssp             ECCCTTCBCCCTTSCCCSTTSCGGGCCH
T ss_pred             EeeCCCceecCCCCCcccccCCcceeCH
Confidence            9999999843 33345567889999998

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.26  E-value=7.7e-13  Score=136.16  Aligned_cols=149  Identities=18%  Similarity=0.129  Sum_probs=110.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...+   
T Consensus        43 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----------~~~~---  101 (362)
T 2bdw_A           43 SVVRRCVHKTTGL-------EFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI-----------QEES---  101 (362)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS---
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EeCC---
Confidence            6788888888887       8899987643211111111 233  68889999999876655           1111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~  483 (512)
                       .++.++++|.. ++..++      ..+...+...+..++.|++.++.| |..+|+|+|||     |+||++...  .+.
T Consensus       102 -~~~lv~e~~~gg~L~~~l------~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlk-----p~NIll~~~~~~~~  169 (362)
T 2bdw_A          102 -FHYLVFDLVTGGELFEDI------VAREFYSEADASHCIQQILESIAYCHSNGIVHRNLK-----PENLLLASKAKGAA  169 (362)
T ss_dssp             -EEEEEECCCCSCBHHHHH------TTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS-----GGGEEESCSSTTCC
T ss_pred             -EEEEEEecCCCCCHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCc-----hHHEEEecCCCCCC
Confidence             27889999975 554444      333457888999999999999999 99999999999     999999753  246


Q ss_pred             EEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++... ......+++|++|+||
T Consensus       170 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aP  199 (362)
T 2bdw_A          170 VKLADFGLAIEVNDSEAWHGFAGTPGYLSP  199 (362)
T ss_dssp             EEECCCTTCBCCTTCCSCCCSCSCTTTCCH
T ss_pred             EEEeecCcceEecCCcccccCCCCccccCH
Confidence            9999999997433 3345678999999998

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.25  E-value=9.1e-13  Score=131.55  Aligned_cols=155  Identities=23%  Similarity=0.283  Sum_probs=111.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC---CCCCchH-HHH--HH---hhCCCCCCCcCCchhhhhHHhhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI---PTTVPSS-VAS--IL---NDNACVNLTSKSEPFWILAKAVKDFVD  401 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~---~~~i~~~-~~e--ll---~~~~~~ni~~~~~~fw~l~~alk~F~~  401 (512)
                      +.|+++.+..+|.       .+|+|.+.....   ....+.. .+|  ++   +.++||||++..+.|.          .
T Consensus        23 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~----------~   85 (308)
T 3g33_A           23 GTVYKARDPHSGH-------FVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCA----------T   85 (308)
T ss_dssp             CCEEEEECTTTCC-------EEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEE----------E
T ss_pred             eEEEEEEECCCCc-------EEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeee----------c
Confidence            6788888887777       899998864331   1223333 333  33   4445999998766551          1


Q ss_pred             cCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC
Q psy17422        402 NEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       402 ~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      ........++.+++++..++..++.-..    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. 
T Consensus        86 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk-----p~Nil~~~-  155 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVDQDLRTYLDKAP----PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLK-----PENILVTS-  155 (308)
T ss_dssp             CCSSSEEEEEEEEECCCCBHHHHHHTCC----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----TTTEEECT-
T ss_pred             cCCCCceeEEEEehhhhcCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEEcC-
Confidence            1112223477889999888777664211    1237888999999999999999 99999999999     99999975 


Q ss_pred             CCeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      .+.+|++|||+++.. .....+..++|++|+||
T Consensus       156 ~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  188 (308)
T 3g33_A          156 GGTVKLADFGLARIYSYQMALTPVVVTLWYRAP  188 (308)
T ss_dssp             TSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCH
T ss_pred             CCCEEEeeCccccccCCCcccCCccccccccCc
Confidence            488999999999843 33345678899999998

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.25  E-value=9.2e-13  Score=132.29  Aligned_cols=154  Identities=15%  Similarity=0.101  Sum_probs=111.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.............+|  +++.++||||++..+.|.          .   .+..
T Consensus        23 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~---~~~~   82 (319)
T 4euu_A           23 ANVFRGRHKKTGD-------LFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEE----------E---TTTR   82 (319)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEE----------C---TTTC
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEee----------c---CCCc
Confidence            6788888888787       8999987654322222222445  688899999997765541          1   1112


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc---CCCCe
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN---ESKLV  483 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~---~~~~~  483 (512)
                      .++.+++++. .++..++.-..   .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.   ...+.
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~~  154 (319)
T 4euu_A           83 HKVLIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIK-----PGNIMRVIGEDGQSV  154 (319)
T ss_dssp             CEEEEEECCTTCBHHHHHHSGG---GTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEEECTTSCEE
T ss_pred             eEEEEEeCCCCCCHHHHHHHhc---cccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----HHHEEEeccCCCCce
Confidence            3678999997 57666664221   12237888999999999999999 99999999999     9999972   23467


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. ........++|..|+||
T Consensus       155 ~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aP  184 (319)
T 4euu_A          155 YKLTDFGAARELEDDEQFVSLYGTEEYLHP  184 (319)
T ss_dssp             EEECCCTTCEECCTTCCBCCCCSCGGGCCH
T ss_pred             EEEccCCCceecCCCCceeecccCCCccCH
Confidence            999999999743 33445567899999998

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.25  E-value=6.3e-13  Score=136.59  Aligned_cols=148  Identities=16%  Similarity=0.069  Sum_probs=109.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+.+.++.+|.       .+|+|.+.+..  .........+|  ++..+ +||||+.+...|           +..+ 
T Consensus        34 g~V~~~~~~~~~~-------~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----------~~~~-   94 (353)
T 2i0e_A           34 GKVMLSERKGTDE-------LYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----------QTMD-   94 (353)
T ss_dssp             EEEEEEEETTEEE-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----------ECSS-
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----------EcCC-
Confidence            6677777777776       78999876532  22222222333  56655 799999877666           1211 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..++.      .....+...++.++.|++.+|.+ |..+|+|||||     |+||++.. .+.
T Consensus        95 ---~~~lv~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk-----p~NIll~~-~g~  159 (353)
T 2i0e_A           95 ---RLYFVMEYVNGGDLMYHIQ------QVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLK-----LDNVMLDS-EGH  159 (353)
T ss_dssp             ---EEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSC
T ss_pred             ---EEEEEEeCCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCC-----HHHEEEcC-CCc
Confidence               38899999974 6655553      23457888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .......++||+.|+||
T Consensus       160 vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  190 (353)
T 2i0e_A          160 IKIADFGMCKENIWDGVTTKTFCGTPDYIAP  190 (353)
T ss_dssp             EEECCCTTCBCCCCTTCCBCCCCSCGGGCCH
T ss_pred             EEEEeCCcccccccCCcccccccCCccccCh
Confidence            999999999742  23345678999999998

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.25  E-value=8.3e-13  Score=134.46  Aligned_cols=157  Identities=23%  Similarity=0.192  Sum_probs=112.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|..-...   |..    ..
T Consensus        31 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~---~~~----~~   96 (351)
T 3mi9_A           31 GEVFKARHRKTGQ-------KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASP---YNR----CK   96 (351)
T ss_dssp             TSEEEEEETTTCC-------EEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC---------------
T ss_pred             cEEEEEEECCCCC-------EEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccc---ccc----CC
Confidence            6788888888887       8999988655444444433 455  68889999999876655210000   000    01


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      --++.++++|..++..++.     ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        97 ~~~~lv~e~~~~~l~~~l~-----~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk-----p~NIl~~~-~~~~kl  165 (351)
T 3mi9_A           97 GSIYLVFDFCEHDLAGLLS-----NVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMK-----AANVLITR-DGVLKL  165 (351)
T ss_dssp             CEEEEEEECCSEEHHHHHH-----CTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCEEE
T ss_pred             ceEEEEEeccCCCHHHHHh-----hccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----HHHEEEcC-CCCEEE
Confidence            1277899999876655442     222347889999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC------CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~------~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..      .....+..++|++|+||
T Consensus       166 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (351)
T 3mi9_A          166 ADFGLARAFSLAKNSQPNRYTNRVVTLWYRPP  197 (351)
T ss_dssp             CCCTTCEECCCCSSSSCCCCCSSCSCGGGCCH
T ss_pred             ccchhcccccccccccccccCCcccccCccCc
Confidence            999998621      22345677899999998

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.24  E-value=1.2e-12  Score=140.14  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=109.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.+.......... .+|  +++.++||||++..+.|           ...+   
T Consensus        51 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----------~~~~---  109 (494)
T 3lij_A           51 GEVLLCRDKVTHV-------ERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFF-----------EDKR---  109 (494)
T ss_dssp             -EEEEEEETTTCC-------EEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSS---
T ss_pred             EEEEEEEECCCCc-------EEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EeCC---
Confidence            6788888888887       8899988754432222333 444  68899999999876655           1111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~  483 (512)
                       .++.++++|.. ++..++      ..+...+...+..++.|++.++.| |..+|+|+|||     |+||++...  .+.
T Consensus       110 -~~~lv~e~~~~g~L~~~~------~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----p~Nil~~~~~~~~~  177 (494)
T 3lij_A          110 -NYYLVMECYKGGELFDEI------IHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLK-----PENLLLESKEKDAL  177 (494)
T ss_dssp             -EEEEEEECCCSCBHHHHH------HHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEESCSSTTCC
T ss_pred             -EEEEEEecCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC-----hhhEEEeCCCCCCc
Confidence             27889999975 444443      233457888999999999999999 99999999999     999999643  356


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. ........++|++|+||
T Consensus       178 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aP  207 (494)
T 3lij_A          178 IKIVDFGLSAVFENQKKMKERLGTAYYIAP  207 (494)
T ss_dssp             EEECCCTTCEECBTTBCBCCCCSCTTTCCH
T ss_pred             EEEEECCCCeECCCCccccccCCCcCeeCH
Confidence            999999998732 33446678899999998

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.23  E-value=5.6e-13  Score=136.02  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=112.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.+.. ........ .+|  +++.++||||++..+.|           ...+  
T Consensus        23 g~V~~a~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~-----------~~~~--   82 (336)
T 3h4j_B           23 GKVKLATHYKTQQ-------KVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVI-----------TTPT--   82 (336)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EeCC--
Confidence            6788888888888       89999875432 12222223 344  68889999999876655           1111  


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        .++.+++++..++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        83 --~~~lv~E~~~g~l~~~l~------~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlk-----p~NIll~~-~~~~k  148 (336)
T 3h4j_B           83 --DIVMVIEYAGGELFDYIV------EKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLK-----PENLLLDD-NLNVK  148 (336)
T ss_dssp             --EEEEEECCCCEEHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCS-----TTTEEECT-TCCEE
T ss_pred             --EEEEEEECCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCc-----hhhEEEcC-CCCEE
Confidence              378999999777665553      23457888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.. ........++|++|+||
T Consensus       149 l~DFG~s~~~~~~~~~~~~~gt~~y~aP  176 (336)
T 3h4j_B          149 IADFGLSNIMTDGNFLKTSCGSPNYAAP  176 (336)
T ss_dssp             ECCSSCTBTTTTSBTTCCCTTSTTTSCG
T ss_pred             EEEeccceeccCCcccccccCCcCcCCH
Confidence            9999999743 34445677899999998

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.23  E-value=1e-12  Score=134.72  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=110.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+.+..  ....+....+|  +++.++||||+.....|           ...+  
T Consensus        55 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~--  114 (350)
T 1rdq_E           55 GRVMLVKHKESGN-------HYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----------KDNS--  114 (350)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             cEEEEEEECCCCC-------EEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EcCC--
Confidence            6677888777777       88998875432  11222222344  78889999999876655           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|+++. .++..++.      .....+...++.++.|++.+|.+ |..+|+|||||     |+||++.. .+.+
T Consensus       115 --~~~lv~e~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~g~~  180 (350)
T 1rdq_E          115 --NLYMVMEYVAGGEMFSHLR------RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLK-----PENLLIDQ-QGYI  180 (350)
T ss_dssp             --EEEEEEECCTTCBHHHHHH------HHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCE
T ss_pred             --EEEEEEcCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCc-----cceEEECC-CCCE
Confidence              2789999997 46655553      33457888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..... ...++||+.|+||
T Consensus       181 kL~DFg~a~~~~~~-~~~~~gt~~y~aP  207 (350)
T 1rdq_E          181 QVTDFGFAKRVKGR-TWTLCGTPEALAP  207 (350)
T ss_dssp             EECCCTTCEECSSC-BCCCEECGGGCCH
T ss_pred             EEcccccceeccCC-cccccCCccccCH
Confidence            99999999844332 3457899999998

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.23  E-value=9.5e-13  Score=138.17  Aligned_cols=149  Identities=17%  Similarity=0.115  Sum_probs=109.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCc--hHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVP--SSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~--~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+.+..  ....+.  ...++++...+|+||+.....|           ...+  
T Consensus        75 G~V~~~~~~~~~~-------~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~-----------~~~~--  134 (412)
T 2vd5_A           75 SEVAVVKMKQTGQ-------VYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF-----------QDEN--  134 (412)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE-----------eeCC--
Confidence            5677777777777       88999875421  111111  1233478888999999876665           1221  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|++|. .++..++.-.     ....+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus       135 --~~~lVmE~~~gg~L~~~l~~~-----~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLK-----p~NILld~-~g~v  201 (412)
T 2vd5_A          135 --YLYLVMEYYVGGDLLTLLSKF-----GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIK-----PDNILLDR-CGHI  201 (412)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCE
T ss_pred             --EEEEEEcCCCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccC-----HHHeeecC-CCCE
Confidence              2889999996 5776665421     2357888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCC-CC--CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-EN--EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~--~~t~yv~tr~YraP  512 (512)
                      |++|||+++... ..  .....+||+.|+||
T Consensus       202 kL~DFGla~~~~~~~~~~~~~~~Gt~~Y~AP  232 (412)
T 2vd5_A          202 RLADFGSCLKLRADGTVRSLVAVGTPDYLSP  232 (412)
T ss_dssp             EECCCTTCEECCTTSCEECSSCCSCGGGCCH
T ss_pred             EEeechhheeccCCCccccceeccccCcCCH
Confidence            999999987332 21  23457899999998

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.23  E-value=8.6e-13  Score=135.93  Aligned_cols=151  Identities=22%  Similarity=0.206  Sum_probs=100.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC-CCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE-GNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~-~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|.          ... ...
T Consensus        39 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~----------~~~~~~~  101 (371)
T 2xrw_A           39 GIVCAAYDAILER-------NVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFT----------PQKSLEE  101 (371)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----------SCCSTTT
T ss_pred             EEEEEEEECCCCc-------eEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeec----------ccccccc
Confidence            5677777777776       8899988654322211122 344  688899999998776652          100 011


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.++++|..++..++.        ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       102 ~~~~~lv~e~~~~~l~~~~~--------~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk-----p~NIl~~~-~~~~k  167 (371)
T 2xrw_A          102 FQDVYIVMELMDANLCQVIQ--------MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLK  167 (371)
T ss_dssp             CCEEEEEEECCSEEHHHHHH--------SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSCEE
T ss_pred             ccceEEEEEcCCCCHHHHHh--------hccCHHHHHHHHHHHHHHHHHHHHCCeecccCC-----HHHEEEcC-CCCEE
Confidence            12378999999877655542        237888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++... ....+.+++|++|+||
T Consensus       168 l~Dfg~a~~~~~~~~~~~~~gt~~y~aP  195 (371)
T 2xrw_A          168 ILDFGLARTAGTSFMMTPYVVTRYYRAP  195 (371)
T ss_dssp             ECCCCC----------------CTTCCH
T ss_pred             EEEeecccccccccccCCceecCCccCH
Confidence            99999998433 2345678999999998

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.23  E-value=1e-12  Score=137.84  Aligned_cols=147  Identities=15%  Similarity=0.098  Sum_probs=109.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCch--HHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPS--SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~--~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  .......  ...+++..++||||+++...|           ....  
T Consensus        83 G~V~~~~~~~~~~-------~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-----------~~~~--  142 (410)
T 3v8s_A           83 GEVQLVRHKSTRK-------VYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF-----------QDDR--  142 (410)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS--
T ss_pred             EEEEEEEECCCCc-------EEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EECC--
Confidence            6777888877777       88999875421  1112211  233478899999999876665           1221  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|++|.. ++..+++       +...+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus       143 --~~~lV~E~~~gg~L~~~l~-------~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLK-----p~NILl~~-~g~i  207 (410)
T 3v8s_A          143 --YLYMVMEYMPGGDLVNLMS-------NYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVK-----PDNMLLDK-SGHL  207 (410)
T ss_dssp             --EEEEEECCCTTEEHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCE
T ss_pred             --EEEEEEeCCCCCcHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC-----HHHeeECC-CCCE
Confidence              27899999964 6555542       2247888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      |++|||+++.....   .....+||+.|+||
T Consensus       208 kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~AP  238 (410)
T 3v8s_A          208 KLADFGTCMKMNKEGMVRCDTAVGTPDYISP  238 (410)
T ss_dssp             EECCCTTCEECCTTSEEECCSCCSCGGGCCH
T ss_pred             EEeccceeEeeccCCcccccCCcCCccccCH
Confidence            99999999743221   23467999999998

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.22  E-value=1.2e-12  Score=132.31  Aligned_cols=147  Identities=18%  Similarity=0.134  Sum_probs=109.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+.+.++.+|.       .+|+|.+.+...  ........+|  ++..++||||++....|           ...   
T Consensus        20 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~-----------~~~---   78 (318)
T 1fot_A           20 GRVHLIRSRHNGR-------YYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF-----------QDA---   78 (318)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE-----------ECS---
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEE-----------EeC---
Confidence            5677777777777       889988764321  1112111233  78889999999876655           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.+|+++.. ++..++.      .....+...++.++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        79 -~~~~lv~e~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~g~~  145 (318)
T 1fot_A           79 -QQIFMIMDYIEGGELFSLLR------KSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLK-----PENILLDK-NGHI  145 (318)
T ss_dssp             -SEEEEEECCCCSCBHHHHHH------HTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----GGGEEECT-TSCE
T ss_pred             -CEEEEEEeCCCCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----hheEEEcC-CCCE
Confidence             138899999974 6655553      33457888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..... ....++|+.|+||
T Consensus       146 kL~Dfg~a~~~~~~-~~~~~gt~~y~aP  172 (318)
T 1fot_A          146 KITDFGFAKYVPDV-TYTLCGTPDYIAP  172 (318)
T ss_dssp             EECCCSSCEECSSC-BCCCCSCTTTCCH
T ss_pred             EEeecCcceecCCc-cccccCCccccCH
Confidence            99999999754332 3456899999998

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.22  E-value=3.1e-12  Score=134.25  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-------CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-------TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVD  401 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-------~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~  401 (512)
                      +.|+++.++.+|.       .+|+|.+......       .....-.+|  +|..++||||++..+.|           +
T Consensus       149 g~V~~a~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~-----------~  210 (419)
T 3i6u_A          149 GEVKLAFERKTCK-------KVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF-----------D  210 (419)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEE-----------E
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEE-----------e
Confidence            7888999988888       8999987643211       011111234  68889999999876654           1


Q ss_pred             cCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC
Q psy17422        402 NEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       402 ~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      .  .   .++.++++|...+     |.+........+...+..++.|++.++.| |..+|+|+|||     |+||++...
T Consensus       211 ~--~---~~~lv~e~~~~g~-----L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlk-----p~NIll~~~  275 (419)
T 3i6u_A          211 A--E---DYYIVLELMEGGE-----LFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLK-----PENVLLSSQ  275 (419)
T ss_dssp             S--S---EEEEEEECCTTCB-----GGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEESSS
T ss_pred             c--C---ceEEEEEcCCCCc-----HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----hHhEEEecC
Confidence            1  1   1678999997532     33333444568889999999999999999 99999999999     999999643


Q ss_pred             --CCeEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        481 --KLVLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 --~~~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                        ...+|++|||+++... ......+++|+.|+||
T Consensus       276 ~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  310 (419)
T 3i6u_A          276 EEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAP  310 (419)
T ss_dssp             SSSCCEEECCSSTTTSCC-----------CTTCCT
T ss_pred             CCcceEEEeecccceecCCCccccccCCCCCccCc
Confidence              2359999999998543 3345678999999998

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.22  E-value=1.4e-12  Score=130.15  Aligned_cols=145  Identities=17%  Similarity=0.236  Sum_probs=108.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+......  -... .+|  +++.++||||++..+.|.           ..+   
T Consensus        34 g~V~~~~~~~~~~-------~vaiK~~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------~~~---   90 (297)
T 3fxz_A           34 GTVYTAMDVATGQ-------EVAIRQMNLQQQP--KKELIINEILVMRENKNPNIVNYLDSYL-----------VGD---   90 (297)
T ss_dssp             EEEEEEEBTTTCC-------EEEEEEEEGGGCS--CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------ETT---
T ss_pred             eEEEEEEECCCCc-------EEEEEEeeccccc--HHHHHHHHHHHHhcCCCCCCCeEeEEEE-----------ECC---
Confidence            6778888777777       8899987543221  1222 344  688899999998766551           111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++|+|. .++..++.      . ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        91 -~~~lv~e~~~~~~L~~~~~------~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlk-----p~Nil~~~-~~~~k  156 (297)
T 3fxz_A           91 -ELWVVMEYLAGGSLTDVVT------E-TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----SDNILLGM-DGSVK  156 (297)
T ss_dssp             -EEEEEEECCTTCBHHHHHH------H-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEE
T ss_pred             -EEEEEEECCCCCCHHHHHh------h-cCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCC-----HHHEEECC-CCCEE
Confidence             2789999996 45555543      2 247888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..  ........++|+.|+||
T Consensus       157 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  185 (297)
T 3fxz_A          157 LTDFGFCAQITPEQSKRSTMVGTPYWMAP  185 (297)
T ss_dssp             ECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred             EeeCCCceecCCcccccCCccCCcCccCh
Confidence            9999998732  23345567899999998

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.22  E-value=1.2e-12  Score=133.42  Aligned_cols=149  Identities=21%  Similarity=0.228  Sum_probs=108.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC---CCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP---TTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~---~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.+..+|.       .+|+|.+......   ..+... .+|  ++..++||||+...+.|.           ..+
T Consensus        24 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~   85 (346)
T 1ua2_A           24 ATVYKARDKNTNQ-------IVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG-----------HKS   85 (346)
T ss_dssp             EEEEEEECSSCCS-------EEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC-----------CTT
T ss_pred             EEEEEEEECCCCc-------EEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe-----------eCC
Confidence            6788888888887       8899987643221   112222 344  688899999998766651           111


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                          .++.++++|..++..++.-     .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.
T Consensus        86 ----~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-----p~Nil~~~-~~~  150 (346)
T 1ua2_A           86 ----NISLVFDFMETDLEVIIKD-----NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK-----PNNLLLDE-NGV  150 (346)
T ss_dssp             ----CCEEEEECCSEEHHHHHTT-----CCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TCC
T ss_pred             ----ceEEEEEcCCCCHHHHHHh-----cCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC-----HHHEEEcC-CCC
Confidence                2778999998776555432     22346778899999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .....+..++|++|+||
T Consensus       151 ~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  181 (346)
T 1ua2_A          151 LKLADFGLAKSFGSPNRAYTHQVVTRWYRAP  181 (346)
T ss_dssp             EEECCCGGGSTTTSCCCCCCCSCCCCTTCCH
T ss_pred             EEEEecccceeccCCcccCCcccccccccCc
Confidence            999999998743  33445677899999998

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.22  E-value=1.5e-12  Score=144.88  Aligned_cols=148  Identities=16%  Similarity=0.059  Sum_probs=109.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  ....+....+|  ++..+ +|+||+.+...|           +..+ 
T Consensus       355 G~V~~~~~~~~~~-------~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~-----------~~~~-  415 (674)
T 3pfq_A          355 GKVMLSERKGTDE-------LYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----------QTMD-  415 (674)
T ss_dssp             BCEEEEEESSSCC-------EEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEEC-----------BCSS-
T ss_pred             EEEEEEEECCCCc-------EEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEE-----------EeCC-
Confidence            5566666666666       78999876532  23333333444  56554 689998776665           2211 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..++.      .....+...++.|+.|++.+|.| |..+|+|||||     |+||++.. .+.
T Consensus       416 ---~~~lV~E~~~gg~L~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLK-----p~NILl~~-~g~  480 (674)
T 3pfq_A          416 ---RLYFVMEYVNGGDLMYHIQ------QVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLK-----LDNVMLDS-EGH  480 (674)
T ss_dssp             ---EEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCC-----STTEEECS-SSC
T ss_pred             ---EEEEEEeCcCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCC-----hhhEEEcC-CCc
Confidence               38899999974 6555543      33457888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +||+|||+++.  ........++||++|+||
T Consensus       481 ikL~DFGla~~~~~~~~~~~~~~GT~~Y~AP  511 (674)
T 3pfq_A          481 IKIADFGMCKENIWDGVTTKTFCGTPDYIAP  511 (674)
T ss_dssp             EEECCCTTCEECCCTTCCBCCCCSCSSSCCH
T ss_pred             EEEeecceeeccccCCcccccccCCCcccCH
Confidence            99999999973  233445678999999998

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.22  E-value=1.5e-12  Score=129.65  Aligned_cols=148  Identities=18%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .+|  ++..++||||++..+.+           ...+  
T Consensus        25 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~-----------~~~~--   84 (294)
T 4eqm_A           25 STVYLAEDTILNI-------KVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVD-----------EEDD--   84 (294)
T ss_dssp             EEEEEEEETTTCS-------EEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEE-----------ECSS--
T ss_pred             EEEEEEEECCCCC-------eEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEee-----------eeCC--
Confidence            5677777777776       88999875432211 01111 233  57888999999766554           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++|++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        85 --~~~lv~e~~~g~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlk-----p~Nil~~~-~~~~  150 (294)
T 4eqm_A           85 --CYYLVMEYIEGPTLSEYIE------SHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIK-----PQNILIDS-NKTL  150 (294)
T ss_dssp             --EEEEEEECCCSCBHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCE
T ss_pred             --eEEEEEeCCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCCE
Confidence              27889999975 6666553      33457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....   ......++|..|+||
T Consensus       151 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aP  181 (294)
T 4eqm_A          151 KIFDFGIAKALSETSLTQTNHVLGTVQYFSP  181 (294)
T ss_dssp             EECCCSSSTTC-------------CCSSCCH
T ss_pred             EEEeCCCccccccccccccCccccCccccCH
Confidence            9999999974322   223456899999998

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.22  E-value=3.3e-13  Score=136.23  Aligned_cols=148  Identities=20%  Similarity=0.205  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC---CCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT---TVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~---~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.......   .+..+ .++++.++||||+...+.|           ...+   
T Consensus        16 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~E-~~~l~~l~h~~iv~~~~~~-----------~~~~---   73 (324)
T 3mtl_A           16 ATVYKGKSKLTDN-------LVALKEIRLEHEEGAPCTAIRE-VSLLKDLKHANIVTLHDII-----------HTEK---   73 (324)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECC------CCCCCCC-HHHHSCCCCTTBCCEEEEE-----------ECSS---
T ss_pred             EEEEEEEECCCCc-------EEEEEEEecccccccchhHHHH-HHHHHhcCCCCCCeeeeEE-----------eeCC---
Confidence            6788888887777       88999875432211   11122 2368889999999776655           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|..++..++.-.     ....+...++.++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        74 -~~~lv~e~~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dik-----p~NIl~~~-~~~~kl  141 (324)
T 3mtl_A           74 -SLTLVFEYLDKDLKQYLDDC-----GNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLK-----PQNLLINE-RGELKL  141 (324)
T ss_dssp             -CEEEEEECCSEEHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCC-----GGGEEECT-TCCEEE
T ss_pred             -EEEEEecccccCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcC-----HHHEEECC-CCCEEE
Confidence             27899999988776665421     2347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  +.......++|++|+||
T Consensus       142 ~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  169 (324)
T 3mtl_A          142 ADFGLARAKSIPTKTYDNEVVTLWYRPP  169 (324)
T ss_dssp             CSSSEEECC------------CGGGCCH
T ss_pred             ccCcccccccCCccccccccCcccccCh
Confidence            999998733  23345567899999998

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.21  E-value=6.8e-13  Score=138.47  Aligned_cols=152  Identities=16%  Similarity=0.151  Sum_probs=102.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.++.+|.       .+|+|.+...   .....++..+++..+|+||+...+.|..       +.    .+.-.+
T Consensus        76 g~V~~~~~~~~~~-------~vAiK~~~~~---~~~~~E~~~~~~~~~hp~iv~l~~~~~~-------~~----~~~~~~  134 (400)
T 1nxk_A           76 GKVLQIFNKRTQE-------KFALKMLQDC---PKARREVELHWRASQCPHIVRIVDVYEN-------LY----AGRKCL  134 (400)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECS---HHHHHHHHHHHHHTTSTTBCCEEEEEEE-------EE----TTEEEE
T ss_pred             eEEEEEEECCCCC-------EEEEEEeCcc---hhHHHHHHHHHHhcCCCCcceEeEEEee-------cc----cCCcEE
Confidence            6788888888887       8899987531   1111122224466789999987666521       00    111237


Q ss_pred             eEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEE
Q psy17422        411 RGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKL  486 (512)
Q Consensus       411 ~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl  486 (512)
                      +.++++|.. ++..++.-.    .....+...+..++.|++.+|.| |..+|+|||||     |+||++...  .+.+|+
T Consensus       135 ~lv~E~~~gg~L~~~l~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~Nill~~~~~~~~~kl  205 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDR----GDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK-----PENLLYTSKRPNAILKL  205 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSSSTTCCEEE
T ss_pred             EEEEEeCCCCcHHHHHHHh----CCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcC-----cceEEEecCCCCccEEE
Confidence            889999975 666665421    11247888999999999999999 99999999999     999999753  478999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.. .....+..++|++|+||
T Consensus       206 ~DFG~a~~~~~~~~~~~~~gt~~y~aP  232 (400)
T 1nxk_A          206 TDFGFAKETTSHNSLTTPCYTPYYVAP  232 (400)
T ss_dssp             CCCTTCEECC-----------CTTCCG
T ss_pred             EecccccccCCCCccccCCCCCCccCH
Confidence            999999843 23445678999999998

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.21  E-value=2e-12  Score=132.06  Aligned_cols=147  Identities=14%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  .....+++.+.+..+||||+...+.|           ...    -.+
T Consensus        36 g~V~~~~~~~~~~-------~~avK~~~~~~--~~~~~E~~~l~~~~~hp~iv~~~~~~-----------~~~----~~~   91 (342)
T 2qr7_A           36 SVCKRCIHKATNM-------EFAVKIIDKSK--RDPTEEIEILLRYGQHPNIITLKDVY-----------DDG----KYV   91 (342)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEETTT--CCCHHHHHHHHHHTTSTTBCCEEEEE-----------ECS----SEE
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEccc--CChHHHHHHHHHhcCCCCcCeEEEEE-----------EcC----CEE
Confidence            6788888888887       88999886532  12223333344445899999876665           111    137


Q ss_pred             eEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC---CeEE
Q psy17422        411 RGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK---LVLK  485 (512)
Q Consensus       411 ~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~---~~~K  485 (512)
                      +.+|++|.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|||||     |+||++....   +.+|
T Consensus        92 ~lv~E~~~gg~L~~~i~------~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlk-----p~NIl~~~~~~~~~~~k  160 (342)
T 2qr7_A           92 YVVTELMKGGELLDKIL------RQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLK-----PSNILYVDESGNPESIR  160 (342)
T ss_dssp             EEEECCCCSCBHHHHHH------TCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEESSSSCSGGGEE
T ss_pred             EEEEeCCCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCC-----HHHEEEecCCCCcCeEE
Confidence            899999974 5555443      33457888999999999999999 99999999999     9999985443   3599


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..  ........++|+.|+||
T Consensus       161 l~Dfg~a~~~~~~~~~~~~~~gt~~y~aP  189 (342)
T 2qr7_A          161 ICDFGFAKQLRAENGLLMTPCYTANFVAP  189 (342)
T ss_dssp             ECCCTTCEECBCTTCCBCCSSCCSSCCCH
T ss_pred             EEECCCcccCcCCCCceeccCCCccccCH
Confidence            9999998732  23345567899999998

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.21  E-value=9.5e-13  Score=133.11  Aligned_cols=148  Identities=18%  Similarity=0.083  Sum_probs=106.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+....... .... .+|  +++.++||||++..+.+           ...+   
T Consensus        21 g~V~~~~~~~~~~-------~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~hpnIv~~~~~~-----------~~~~---   78 (323)
T 3tki_A           21 GEVQLAVNRVTEE-------AVAVKIVDMKRAVD-CPENIKKEICINKMLNHENVVKFYGHR-----------REGN---   78 (323)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS---
T ss_pred             EEEEEEEECCCCc-------EEEEEEEEcccccc-hHHHHHHHHHHHHhCCCCCCCeEEEEE-----------ecCC---
Confidence            6677888777777       88999875322111 1122 233  68889999999766544           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|...+     |....+.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        79 -~~~lv~e~~~~~~-----L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlk-----p~NIll~~-~~~~kl  146 (323)
T 3tki_A           79 -IQYLFLEYCSGGE-----LFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK-----PENLLLDE-RDNLKI  146 (323)
T ss_dssp             -EEEEEEECCTTEE-----GGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCEEE
T ss_pred             -eEEEEEEcCCCCc-----HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccc-----hHHEEEeC-CCCEEE
Confidence             2678899997522     33333444457888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..    .......+++|+.|+||
T Consensus       147 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aP  176 (323)
T 3tki_A          147 SDFGLATVFRYNNRERLLNKMCGTLPYVAP  176 (323)
T ss_dssp             CCCTTCEECEETTEECCBCSCCSCGGGSCH
T ss_pred             EEeeccceeccCCcccccCCCccCcCccCc
Confidence            999998732    22335578899999998

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.21  E-value=1.8e-12  Score=131.15  Aligned_cols=149  Identities=18%  Similarity=0.194  Sum_probs=111.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC---Cc-hH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT---VP-SS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~---i~-~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++.+|.       .+|+|.+........   .. .. .+|  +++.++||||+...+.|.           ..
T Consensus        25 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------~~   86 (326)
T 2y0a_A           25 AVVKKCREKSTGL-------QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE-----------NK   86 (326)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------CS
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----------eC
Confidence            6788888888888       899998865432211   11 22 244  688899999998766551           11


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      .    .++.+++++. .++..++      ..+...+...+..++.|++.++.+ |..+|+|+|||     |+||++....
T Consensus        87 ~----~~~lv~e~~~~~~L~~~l------~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk-----p~NIll~~~~  151 (326)
T 2y0a_A           87 T----DVILILELVAGGELFDFL------AEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLK-----PENIMLLDRN  151 (326)
T ss_dssp             S----EEEEEEECCCSCBHHHHH------TTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESCSS
T ss_pred             C----EEEEEEEcCCCCCHHHHH------HhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCC-----HHHEEEecCC
Confidence            1    2788999997 4655554      334457888999999999999999 99999999999     9999997542


Q ss_pred             ---CeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 ---LVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ---~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                         ..+|++|||+++.. ........++|+.|+||
T Consensus       152 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  186 (326)
T 2y0a_A          152 VPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAP  186 (326)
T ss_dssp             SSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCH
T ss_pred             CCCCCEEEEECCCCeECCCCCccccccCCcCcCCc
Confidence               17999999999743 33445667899999998

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.21  E-value=1.7e-12  Score=132.80  Aligned_cols=153  Identities=20%  Similarity=0.141  Sum_probs=110.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCC-chH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTV-PSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i-~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.++.+|.       .+|+|.+....  ..... ... .+|  +++.++||||++..+.|           ...+
T Consensus        38 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~-----------~~~~   99 (351)
T 3c0i_A           38 SVVRRCINRETGQ-------QFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETY-----------SSDG   99 (351)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------EETT
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EeCC
Confidence            6788888888888       89999875432  11111 122 344  78889999999877655           1211


Q ss_pred             CCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--
Q psy17422        405 NGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--  480 (512)
Q Consensus       405 ~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--  480 (512)
                          .++.+||+|. .++..++.-..  ......+...+..++.|++.++.| |.++|+|+|||     |+||++...  
T Consensus       100 ----~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlk-----p~NIl~~~~~~  168 (351)
T 3c0i_A          100 ----MLYMVFEFMDGADLCFEIVKRA--DAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVK-----PHCVLLASKEN  168 (351)
T ss_dssp             ----EEEEEEECCSSCBHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECSSST
T ss_pred             ----EEEEEEeCCCCCCHHHHHHHhc--ccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC-----hHHeEEecCCC
Confidence                2789999998 56655553221  122346888999999999999999 99999999999     999999653  


Q ss_pred             CCeEEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      .+.+|++|||+++...  .......++|++|+||
T Consensus       169 ~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aP  202 (351)
T 3c0i_A          169 SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAP  202 (351)
T ss_dssp             TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCH
T ss_pred             CCcEEEecCcceeEecCCCeeecCCcCCcCccCH
Confidence            2359999999987432  2234567899999998

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.21  E-value=1.5e-12  Score=142.11  Aligned_cols=150  Identities=18%  Similarity=0.115  Sum_probs=111.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+..  .........+|  +|..++||||+.....|           ...+  
T Consensus       198 G~Vy~a~~~~tg~-------~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----------~~~~--  257 (576)
T 2acx_A          198 GEVCACQVRATGK-------MYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY-----------ETKD--  257 (576)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS--
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEE-----------eeCC--
Confidence            5677777777777       88999875432  11222122334  78899999999876655           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|++|. .++..++...    .+...+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.+
T Consensus       258 --~l~lVmEy~~gg~L~~~l~~~----~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLK-----PeNILld~-~g~v  325 (576)
T 2acx_A          258 --ALCLVLTLMNGGDLKFHIYHM----GQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLK-----PENILLDD-HGHI  325 (576)
T ss_dssp             --EEEEEECCCCSCBHHHHHHSS----SSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TSCE
T ss_pred             --EEEEEEEcCCCCcHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCc-----hheEEEeC-CCCe
Confidence              3889999997 5665554321    12347888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. .....+..+||+.|+||
T Consensus       326 KL~DFGla~~~~~~~~~~~~~GT~~Y~AP  354 (576)
T 2acx_A          326 RISDLGLAVHVPEGQTIKGRVGTVGYMAP  354 (576)
T ss_dssp             EECCCTTCEECCTTCCEECCCSCGGGCCH
T ss_pred             EEEecccceecccCccccccCCCccccCH
Confidence            99999999743 33345667999999998

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.20  E-value=1.9e-12  Score=130.93  Aligned_cols=135  Identities=21%  Similarity=0.169  Sum_probs=93.3

Q ss_pred             HhHHHHhhhhcC--CC-CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHH
Q psy17422        351 EEAMKAVNFALI--PT-TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRY  424 (512)
Q Consensus       351 ~eAik~v~~~~~--~~-~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~y  424 (512)
                      .+|+|.+.+...  .. ......+|  +++.++||||+.....|           ...+    .++.++++|.. ++..+
T Consensus        47 ~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~----~~~lv~e~~~~~~L~~~  111 (327)
T 3a62_A           47 IFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAF-----------QTGG----KLYLILEYLSGGELFMQ  111 (327)
T ss_dssp             EEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEE-----------ECSS----CEEEEEECCTTEEHHHH
T ss_pred             EEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEE-----------EcCC----EEEEEEeCCCCCcHHHH
Confidence            789998765321  11 11111233  78889999999776655           1111    27899999974 55444


Q ss_pred             HHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC--CCCCcc
Q psy17422        425 IALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS--HENEIT  501 (512)
Q Consensus       425 v~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~--~~~~~t  501 (512)
                      +.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..  ......
T Consensus       112 l~------~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlk-----p~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~  179 (327)
T 3a62_A          112 LE------REGIFMEDTACFYLAEISMALGHLHQKGIIYRDLK-----PENIMLNH-QGHVKLTDFGLCKESIHDGTVTH  179 (327)
T ss_dssp             HH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----TTTEEECT-TSCEEECCCSCC----------C
T ss_pred             HH------hCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCC-----HHHeEECC-CCcEEEEeCCcccccccCCcccc
Confidence            43      33446788899999999999999 99999999999     99999975 489999999998742  233345


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      .+++|.+|+||
T Consensus       180 ~~~gt~~y~aP  190 (327)
T 3a62_A          180 TFCGTIEYMAP  190 (327)
T ss_dssp             TTSSCCTTSCH
T ss_pred             ccCCCcCccCH
Confidence            67899999998

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.20  E-value=1e-12  Score=134.74  Aligned_cols=152  Identities=22%  Similarity=0.211  Sum_probs=108.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..++.       .+|+|.+...........-.+|  ++..++||||+...+.|.          ........
T Consensus        41 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~----------~~~~~~~~  103 (364)
T 3qyz_A           41 GMVCSAYDNLNKV-------RVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIR----------APTIEQMK  103 (364)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEEC----------CSSTTTCC
T ss_pred             eEEEEEEECCCCe-------EEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEe----------cCCccccc
Confidence            5667777666666       7899987532110000111344  688899999998776552          11101112


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.++++|..++..+++-       ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++
T Consensus       104 ~~~iv~e~~~~~L~~~l~~-------~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----p~NIl~~~-~~~~kl~  170 (364)
T 3qyz_A          104 DVYIVQDLMETDLYKLLKT-------QHLSNDHICYFLYQILRGLKYIHSANVLHRDLK-----PSNLLLNT-TCDLKIC  170 (364)
T ss_dssp             CEEEEEECCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEEEC
T ss_pred             eEEEEEcccCcCHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----hHhEEECC-CCCEEEE
Confidence            3788999998876665531       247888999999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        488 DFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      |||+++...     ....+.+++|++|+||
T Consensus       171 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aP  200 (364)
T 3qyz_A          171 DFGLARVADPDHDHTGFLTEYVATRWYRAP  200 (364)
T ss_dssp             CCTTCEECCGGGCBCCTTCCCCSCGGGCCH
T ss_pred             eCcceEecCCCCCccccccccccccCCCCC
Confidence            999987321     1224677999999998

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.20  E-value=1.4e-12  Score=139.03  Aligned_cols=149  Identities=17%  Similarity=0.182  Sum_probs=110.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+...... ...... .+|  +++.++||||++..+.|           ...+  
T Consensus        40 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----------~~~~--   99 (484)
T 3nyv_A           40 GEVILCKDKITGQ-------ECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFF-----------EDKG--   99 (484)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             EEEEEEEECCCCC-------EEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EeCC--
Confidence            6788888888888       8999988654322 122222 344  68889999999876655           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--CCC
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--SKL  482 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--~~~  482 (512)
                        .++.+++++.. ++..++      ..+...+...+..++.|++.++.| |..+|+|+|||     |+||++..  ..+
T Consensus       100 --~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----p~Nil~~~~~~~~  166 (484)
T 3nyv_A          100 --YFYLVGEVYTGGELFDEI------ISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLK-----PENLLLESKSKDA  166 (484)
T ss_dssp             --EEEEEECCCCSCBHHHHH------HTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEESSSSTTC
T ss_pred             --EEEEEEecCCCCCHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----HHHEEEecCCCCC
Confidence              37888999874 443433      334457888999999999999999 99999999999     99999952  347


Q ss_pred             eEEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++. .........++|++|+||
T Consensus       167 ~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  197 (484)
T 3nyv_A          167 NIRIIDFGLSTHFEASKKMKDKIGTAYYIAP  197 (484)
T ss_dssp             CEEECCTTHHHHBCCCCSHHHHTTGGGTCCH
T ss_pred             cEEEEeeeeeEEcccccccccCCCCccccCc
Confidence            899999999873 233345667899999998

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.20  E-value=2.7e-12  Score=126.83  Aligned_cols=153  Identities=15%  Similarity=0.120  Sum_probs=109.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+............ .+|  +++.++||||++..+.|.           ....+.
T Consensus        40 g~Vy~~~~~~~~~-------~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----------~~~~~~  101 (290)
T 1t4h_A           40 KTVYKGLDTETTV-------EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWE-----------STVKGK  101 (290)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----------EESSSC
T ss_pred             eEEEEeEecCCce-------EEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeec-----------cccCCC
Confidence            6778887777776       7888876543221111111 233  688899999997665441           111122


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      ..++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+  |+|+|||     |+||++....+.
T Consensus       102 ~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dik-----p~Nil~~~~~~~  170 (290)
T 1t4h_A          102 KCIVLVTELMTSGTLKTYLK------RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK-----CDNIFITGPTGS  170 (290)
T ss_dssp             EEEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCC-----GGGEEESSTTSC
T ss_pred             ceEEEEEEecCCCCHHHHHH------HccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCC-----HHHEEEECCCCC
Confidence            337889999974 6666653      23447888999999999999999 9998  9999999     999999745689


Q ss_pred             EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..........++|..|+||
T Consensus       171 ~kl~Dfg~~~~~~~~~~~~~~~t~~y~aP  199 (290)
T 1t4h_A          171 VKIGDLGLATLKRASFAKAVIGTPEFMAP  199 (290)
T ss_dssp             EEECCTTGGGGCCTTSBEESCSSCCCCCG
T ss_pred             EEEeeCCCcccccccccccccCCcCcCCH
Confidence            99999999975444444566789999998

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.19  E-value=1.7e-12  Score=138.69  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=111.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.... ........ .+|  +++.++||||++..+.|           ...+  
T Consensus        30 g~V~~a~~~~~g~-------~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~-----------~~~~--   89 (476)
T 2y94_A           30 GKVKVGKHELTGH-------KVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVI-----------STPS--   89 (476)
T ss_dssp             SCEEEEEETTTCC-------EEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EECC--
Confidence            6677888887787       89999875432 11122222 344  68889999999876655           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++      ......+...+..++.|++.++.+ |..+|+|||||     |+||++.. .+.+
T Consensus        90 --~~~lv~E~~~gg~L~~~l------~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLk-----p~NIll~~-~~~v  155 (476)
T 2y94_A           90 --DIFMVMEYVSGGELFDYI------CKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLK-----PENVLLDA-HMNA  155 (476)
T ss_dssp             --EEEEEEECCSSEEHHHHT------TSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCS-----GGGEEECT-TCCE
T ss_pred             --EEEEEEeCCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCccccc-----HHHEEEec-CCCe
Confidence              37899999964 554444      344457889999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. ........++|++|+||
T Consensus       156 kL~DFG~a~~~~~~~~~~~~~gt~~y~aP  184 (476)
T 2y94_A          156 KIADFGLSNMMSDGEFLRTSCGSPNYAAP  184 (476)
T ss_dssp             EECCCSSCEECCTTCCBCCCCSCSTTCCH
T ss_pred             EEEeccchhhccccccccccCCCcCeECh
Confidence            99999999743 33445678999999998

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.19  E-value=1.5e-12  Score=131.80  Aligned_cols=157  Identities=10%  Similarity=0.011  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC------CCCchH-HHH--HHhhC---------CCCCCCcCCchh---
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP------TTVPSS-VAS--ILNDN---------ACVNLTSKSEPF---  389 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~------~~i~~~-~~e--ll~~~---------~~~ni~~~~~~f---  389 (512)
                      +.|+++.+  +|.       .+|+|.+......      ...... .+|  +++.+         .|+||+.+.+.+   
T Consensus        34 g~V~~~~~--~~~-------~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~  104 (336)
T 2vuw_A           34 GEVFQTIA--DHT-------PVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQ  104 (336)
T ss_dssp             EEEEEEEE--TTE-------EEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEE
T ss_pred             eEEEEEEe--CCc-------eEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEec
Confidence            66777765  455       8999998764321      111122 344  44444         388998765432   


Q ss_pred             ----hhhHHhhhhhhhcCCC--------CCcceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-
Q psy17422        390 ----WILAKAVKDFVDNEGN--------GNLPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-  455 (512)
Q Consensus       390 ----w~l~~alk~F~~~~~~--------~~lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-  455 (512)
                          -.+++.+..|....+.        +.-.++.+||+|... +...+     . + ...+...++.++.|++.||.| 
T Consensus       105 ~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~-----~-~-~~~~~~~~~~i~~qi~~aL~~l  177 (336)
T 2vuw_A          105 GSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM-----R-T-KLSSLATAKSILHQLTASLAVA  177 (336)
T ss_dssp             SSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGG-----T-T-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHH-----H-h-cCCCHHHHHHHHHHHHHHHHHH
Confidence                1244445555531100        122489999998753 32221     1 1 346889999999999999999 


Q ss_pred             C-CCCCChHHHHhhccccccccccCCCC--------------------eEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        456 P-SSAITEAQVKLFCRNASFIHVNESKL--------------------VLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       456 h-~~~I~hrdIK~Fc~n~~nIll~~~~~--------------------~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      | ..+|+|||||     |+||++... +                    .+|++|||+|+....   .+.+||+.|+||
T Consensus       178 H~~~~ivHrDlK-----p~NILl~~~-~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~---~~~~gt~~y~aP  246 (336)
T 2vuw_A          178 EASLRFEHRDLH-----WGNVLLKKT-SLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD---GIVVFCDVSMDE  246 (336)
T ss_dssp             HHHHCCBCSCCC-----GGGEEEEEC-SCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET---TEEECCCCTTCS
T ss_pred             HHhCCEeECCCC-----HHHEEEecc-CCcceeeeccCccccccCCCceEEEeeccccEecCC---CcEEEeecccCh
Confidence            9 8999999999     999999754 4                    899999999985432   246899999998

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.18  E-value=1.2e-12  Score=130.47  Aligned_cols=149  Identities=22%  Similarity=0.254  Sum_probs=101.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..++||||++..+.|           ...+   
T Consensus        17 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~~---   75 (311)
T 4agu_A           17 GVVFKCRNRDTGQ-------IVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVF-----------RRKR---   75 (311)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------EETT---
T ss_pred             eEEEEEEeCCCCc-------EEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhhee-----------ecCC---
Confidence            6778888888887       8898876443211111111 233  68889999999776655           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.++++|..++     |....+.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        76 -~~~lv~e~~~~~~-----l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~kl  143 (311)
T 4agu_A           76 -RLHLVFEYCDHTV-----LHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVK-----PENILITK-HSVIKL  143 (311)
T ss_dssp             -EEEEEEECCSEEH-----HHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCEEE
T ss_pred             -eEEEEEEeCCCch-----HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----hhhEEEcC-CCCEEE
Confidence             2678899998654     22333334457888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  ........++|.+|+||
T Consensus       144 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  171 (311)
T 4agu_A          144 CDFGFARLLTGPSDYYDDEVATRWYRSP  171 (311)
T ss_dssp             CCCTTCEECC------------GGGCCH
T ss_pred             eeCCCchhccCcccccCCCcCCccccCh
Confidence            999998732  23345567899999998

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.18  E-value=2.6e-12  Score=129.94  Aligned_cols=145  Identities=14%  Similarity=0.157  Sum_probs=95.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.....    ....+|  ++..+. ||||++..+.|           ...    
T Consensus        25 g~V~~~~~~~~~~-------~vavK~~~~~~~----~~~~~e~~~l~~l~~h~niv~~~~~~-----------~~~----   78 (325)
T 3kn6_A           25 SICRKCVHKKSNQ-------AFAVKIISKRME----ANTQKEITALKLCEGHPNIVKLHEVF-----------HDQ----   78 (325)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGH----HHHHHHHHHHHHTTTCTTBCCEEEEE-----------ECS----
T ss_pred             eEEEEEEECCCCC-------EEEEEEEChhhh----hhHHHHHHHHHHhcCCCCeeEEEEEE-----------EcC----
Confidence            7888999888888       889998754311    111233  466665 99999877665           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC--Ce
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK--LV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~--~~  483 (512)
                      -.++.++++|.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++....  ..
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~  147 (325)
T 3kn6_A           79 LHTFLVMELLNGGELFERIK------KKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLK-----PENLLFTDENDNLE  147 (325)
T ss_dssp             SEEEEEECCCCSCBHHHHHH------HCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEEEC----CE
T ss_pred             CEEEEEEEccCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCC-----HHHEEEecCCCccc
Confidence            127889999975 6555543      34457889999999999999999 99999999999     9999996532  27


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  ........++|++|+||
T Consensus       148 ~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  178 (325)
T 3kn6_A          148 IKIIDFGFARLKPPDNQPLKTPCFTLHYAAP  178 (325)
T ss_dssp             EEECCCTTCEECCC-----------------
T ss_pred             EEEeccccceecCCCCCcccccCCCcCccCH
Confidence            999999999732  23345677899999998

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.18  E-value=1.8e-12  Score=129.97  Aligned_cols=149  Identities=16%  Similarity=0.065  Sum_probs=105.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCc-hHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVP-SSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~-~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.......... ..+++   +....+|+||+...+.|           ...+  
T Consensus        71 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~-----------~~~~--  130 (311)
T 3p1a_A           71 GEVFKVRSKEDGR-------LYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAW-----------EEGG--  130 (311)
T ss_dssp             EEEEEEEETTTSC-------EEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------EETT--
T ss_pred             eEEEEEEECCCCe-------EEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEE-----------EeCC--
Confidence            6788888887777       88999765432211100 11222   34445899999776655           1111  


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        .++.++++|..++..++.-.     +...+...+..++.|++.+|.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       131 --~~~lv~e~~~~~L~~~~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----p~NIll~~-~~~~k  197 (311)
T 3p1a_A          131 --ILYLQTELCGPSLQQHCEAW-----GASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVK-----PANIFLGP-RGRCK  197 (311)
T ss_dssp             --EEEEEEECCCCBHHHHHHHH-----CSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECG-GGCEE
T ss_pred             --EEEEEEeccCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----HHHEEECC-CCCEE
Confidence              27889999988776665422     3357889999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.. .....+...+|..|+||
T Consensus       198 l~DFG~a~~~~~~~~~~~~~gt~~y~aP  225 (311)
T 3p1a_A          198 LGDFGLLVELGTAGAGEVQEGDPRYMAP  225 (311)
T ss_dssp             ECCCTTCEECC------CCCCCGGGCCG
T ss_pred             EccceeeeecccCCCCcccCCCccccCH
Confidence            9999998743 22334566799999998

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.18  E-value=1.8e-12  Score=129.90  Aligned_cols=165  Identities=13%  Similarity=0.125  Sum_probs=106.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhh---------------
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWIL---------------  392 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l---------------  392 (512)
                      +.|+++.++.+|.       .+|+|.+..... ...... .+|  +++.++||||++..+.|+.-               
T Consensus        20 g~V~~a~~~~~~~-------~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~   91 (332)
T 3qd2_B           20 GVVFEAKNKVDDC-------NYAIKRIRLPNR-ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLK   91 (332)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEECCST-TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC----
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeecCCc-hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhc
Confidence            6788888887887       899998864321 111122 344  68889999999875544210               


Q ss_pred             --------------------HHhhhhhhhc-------CCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHH
Q psy17422        393 --------------------AKAVKDFVDN-------EGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYR  444 (512)
Q Consensus       393 --------------------~~alk~F~~~-------~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~  444 (512)
                                          .+....|...       .......++.+++++.. ++..++.-...   ....+...+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~  168 (332)
T 3qd2_B           92 DESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS---LEDREHGVCLH  168 (332)
T ss_dssp             ----------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS---GGGSCHHHHHH
T ss_pred             cccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC---ccchhhHHHHH
Confidence                                0000000000       00111226889999974 66666643221   12245556888


Q ss_pred             HHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--------------CCccCeeeeeee
Q psy17422        445 RAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--------------NEITPYLVSRFY  509 (512)
Q Consensus       445 ~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--------------~~~t~yv~tr~Y  509 (512)
                      ++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....              ...+..++|+.|
T Consensus       169 i~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  242 (332)
T 3qd2_B          169 IFIQIAEAVEFLHSKGLMHRDLK-----PSNIFFTM-DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLY  242 (332)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEEECCCTTCEECSCC--------------CCCSCC-CGGG
T ss_pred             HHHHHHHHHHHHHhCCeeecCCC-----cccEEEeC-CCCEEEeecCcccccccchhhccccccccccccccccCCCcCc
Confidence            99999999999 99999999999     99999975 48999999999873211              223557899999


Q ss_pred             ccC
Q psy17422        510 RAP  512 (512)
Q Consensus       510 raP  512 (512)
                      +||
T Consensus       243 ~aP  245 (332)
T 3qd2_B          243 MSP  245 (332)
T ss_dssp             SCH
T ss_pred             cCh
Confidence            998

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.18  E-value=2e-12  Score=134.40  Aligned_cols=154  Identities=15%  Similarity=0.100  Sum_probs=110.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.............+|  +++.++||||+...+.+.          .   .+..
T Consensus        23 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----------~---~~~~   82 (396)
T 4eut_A           23 ANVFRGRHKKTGD-------LFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEE----------E---TTTR   82 (396)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEE----------C---TTTC
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeec----------c---CCCC
Confidence            6788888888887       8999987654322222222344  788999999997765541          1   1112


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc---CCCCe
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN---ESKLV  483 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~---~~~~~  483 (512)
                      .++.++++|.. ++..+++-.   ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.   ...+.
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~---~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~~  154 (396)
T 4eut_A           83 HKVLIMEFCPCGSLYTVLEEP---SNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIK-----PGNIMRVIGEDGQSV  154 (396)
T ss_dssp             CEEEEECCCTTEEHHHHTTSG---GGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEEEECTTSCEE
T ss_pred             eeEEEEecCCCCCHHHHHHhh---hcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcC-----HHHEEEeecCCCcee
Confidence            36789999974 655554321   112237888999999999999999 99999999999     9999972   23467


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. ........++|..|+||
T Consensus       155 ~kL~DFG~a~~~~~~~~~~~~~gt~~y~aP  184 (396)
T 4eut_A          155 YKLTDFGAARELEDDEQFVSLYGTEEYLHP  184 (396)
T ss_dssp             EEECCGGGCEECCCGGGSSCSSSCCTTCCH
T ss_pred             EEEecCCCceEccCCCccccccCCccccCH
Confidence            999999999743 33345567899999998

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.17  E-value=3.1e-12  Score=130.82  Aligned_cols=148  Identities=17%  Similarity=0.130  Sum_probs=97.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.++.++.       .+|+|.+........+..+ .+++..++||||++..+.|.           ..    -.+
T Consensus        67 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~E-~~~l~~l~h~niv~~~~~~~-----------~~----~~~  123 (349)
T 2w4o_A           67 SIVYRCKQKGTQK-------PYALKVLKKTVDKKIVRTE-IGVLLRLSHPNIIKLKEIFE-----------TP----TEI  123 (349)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEC-----------CHHHHHCCCTTBCCEEEEEE-----------CS----SEE
T ss_pred             EEEEEEEECCCCc-------EEEEEEeccchhHHHHHHH-HHHHHhCCCCCCcceeeeEe-----------cC----CeE
Confidence            6777777777776       7899987653322222111 12688899999998766551           11    137


Q ss_pred             eEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--CCCeEEE
Q psy17422        411 RGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--SKLVLKL  486 (512)
Q Consensus       411 ~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--~~~~~Kl  486 (512)
                      +.+++++.. ++..++      ..+...+...+..++.|++.++.+ |..+|+|+|||     |+||++..  ..+.+|+
T Consensus       124 ~lv~e~~~~~~L~~~l------~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dik-----p~NIll~~~~~~~~~kl  192 (349)
T 2w4o_A          124 SLVLELVTGGELFDRI------VEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLK-----PENLLYATPAPDAPLKI  192 (349)
T ss_dssp             EEEECCCCSCBHHHHH------TTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEESSSSTTCCEEE
T ss_pred             EEEEEeCCCCCHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----cccEEEecCCCCCCEEE
Confidence            889999974 554444      334457888999999999999999 99999999999     99999964  2478999


Q ss_pred             ecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      +|||+++... .......++|+.|+||
T Consensus       193 ~Dfg~a~~~~~~~~~~~~~gt~~y~aP  219 (349)
T 2w4o_A          193 ADFGLSKIVEHQVLMKTVCGTPGYCAP  219 (349)
T ss_dssp             CCCC----------------CGGGSCH
T ss_pred             ccCccccccCcccccccccCCCCccCH
Confidence            9999988433 2334567899999998

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.17  E-value=1.2e-12  Score=132.46  Aligned_cols=147  Identities=18%  Similarity=0.132  Sum_probs=108.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...   ..-... .+|  +++.++||||++..+.|           ...+   
T Consensus        19 g~Vy~~~~~~~~~-------~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~-----------~~~~---   74 (321)
T 1tki_A           19 GIVHRCVETSSKK-------TYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESF-----------ESME---   74 (321)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEE-----------EETT---
T ss_pred             eEEEEEEECCCCc-------EEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEE-----------ecCC---
Confidence            6778888887777       7788876421   100111 233  68889999999876655           1211   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC-CCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES-KLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~-~~~~  484 (512)
                       .++.++++|.. ++..++.     ......+...+..++.|++.++.+ |..+|+|+|||     |+||++... .+.+
T Consensus        75 -~~~lv~e~~~g~~L~~~l~-----~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlk-----p~NIl~~~~~~~~~  143 (321)
T 1tki_A           75 -ELVMIFEFISGLDIFERIN-----TSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIR-----PENIIYQTRRSSTI  143 (321)
T ss_dssp             -EEEEEECCCCCCBHHHHHT-----SSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSSSCCCE
T ss_pred             -EEEEEEEeCCCCCHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCC-----HHHEEEccCCCCCE
Confidence             27889999975 6555542     122357888999999999999999 99999999999     999999753 4789


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. +.......++|+.|+||
T Consensus       144 kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  172 (321)
T 1tki_A          144 KIIEFGQARQLKPGDNFRLLFTAPEYYAP  172 (321)
T ss_dssp             EECCCTTCEECCTTCEEEEEESCGGGSCH
T ss_pred             EEEECCCCeECCCCCccccccCChhhcCc
Confidence            99999999743 34445677899999998

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.17  E-value=2.8e-12  Score=139.17  Aligned_cols=152  Identities=16%  Similarity=0.135  Sum_probs=110.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+...  ......-.+|  ++..++||||+.....|           ....  
T Consensus       199 G~Vy~a~~~~tg~-------~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----------~~~~--  258 (543)
T 3c4z_A          199 GEVFACQMKATGK-------LYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF-----------ETKT--  258 (543)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE-----------eeCC--
Confidence            5677777777776       889998764321  1222222334  78889999999876655           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|++|. .++..++.-  .-......+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.+
T Consensus       259 --~l~lVmE~~~gg~L~~~l~~--~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLK-----P~NILl~~-~g~v  328 (543)
T 3c4z_A          259 --DLCLVMTIMNGGDIRYHIYN--VDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLK-----PENVLLDD-DGNV  328 (543)
T ss_dssp             --EEEEEECCCTTCBHHHHHHT--SSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TSCE
T ss_pred             --EEEEEEEeccCCCHHHHHHH--hhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCC-----hHHEEEeC-CCCE
Confidence              2889999998 466555431  11123357888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++...  ......++||++|+||
T Consensus       329 kL~DFGla~~~~~~~~~~~~~~GT~~Y~AP  358 (543)
T 3c4z_A          329 RISDLGLAVELKAGQTKTKGYAGTPGFMAP  358 (543)
T ss_dssp             EECCCTTCEECCTTCCCBCCCCSCTTTSCH
T ss_pred             EEeecceeeeccCCCcccccccCCccccCh
Confidence            999999997432  2234567999999998

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.17  E-value=1.8e-12  Score=134.10  Aligned_cols=150  Identities=15%  Similarity=0.060  Sum_probs=109.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH-HH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV-AS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~-~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............+ +|  +++.++||||++..+.|.           ..+   
T Consensus        41 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----------~~~---   99 (389)
T 3gni_B           41 MTVNLARYKPTGE-------YVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI-----------ADN---   99 (389)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------ETT---
T ss_pred             eEEEEEEEcCCCC-------EEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE-----------ECC---
Confidence            5688888888887       89999986543322222222 23  688899999998766651           111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++++|. .++..++.-.    .....+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.+|
T Consensus       100 -~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk-----p~NIll~~-~~~~k  168 (389)
T 3gni_B          100 -ELWVVTSFMAYGSAKDLICTH----FMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVK-----ASHILISV-DGKVY  168 (389)
T ss_dssp             -EEEEEEECCTTCBHHHHHHHT----CTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEE
T ss_pred             -EEEEEEEccCCCCHHHHHhhh----cccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEcC-CCCEE
Confidence             3789999998 5666665421    11347888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC---------CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS---------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~---------~~~~~t~yv~tr~YraP  512 (512)
                      ++|||++...         ........++|.+|+||
T Consensus       169 l~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  204 (389)
T 3gni_B          169 LSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSP  204 (389)
T ss_dssp             ECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCH
T ss_pred             EcccccceeeccccccccccccccccccccccccCH
Confidence            9999987521         11122345889999998

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.17  E-value=5.4e-12  Score=128.84  Aligned_cols=153  Identities=20%  Similarity=0.206  Sum_probs=102.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCc---------hH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVP---------SS-VAS--ILNDNACVNLTSKSEPFWILAKAVKD  398 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~---------~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~  398 (512)
                      +.|+++.+.. |.       .+|+|.+..........         .. .+|  +++.++||||++..+.|.        
T Consensus        36 g~V~~~~~~~-~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--------   99 (362)
T 3pg1_A           36 GAVCAGVDSE-GI-------PVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFV--------   99 (362)
T ss_dssp             EEEEEEECTT-SC-------EEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEE--------
T ss_pred             EEEEEEECCC-CC-------eEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEE--------
Confidence            5666666543 55       78999886543322110         12 344  688899999998777652        


Q ss_pred             hhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        399 FVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       399 F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                        ..+......++.++++|..++..++.     ..+...+...+..++.|++.++.+ |..+|+|+|||     |+||++
T Consensus       100 --~~~~~~~~~~~lv~e~~~~~l~~~~~-----~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-----p~NIl~  167 (362)
T 3pg1_A          100 --HFEEPAMHKLYLVTELMRTDLAQVIH-----DQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLH-----PGNILL  167 (362)
T ss_dssp             --ECCTTTCCEEEEEEECCSEEHHHHHH-----CTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEE
T ss_pred             --eccCCCcceEEEEEccCCCCHHHHHH-----hcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCC-----hHHEEE
Confidence              11111222378899999987766654     223357888999999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      .. .+.+|++|||+++.. .....+.+++|++|+||
T Consensus       168 ~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aP  202 (362)
T 3pg1_A          168 AD-NNDITICDFNLAREDTADANKTHYVTHRWYRAP  202 (362)
T ss_dssp             CT-TCCEEECCTTC---------------CGGGCCH
T ss_pred             cC-CCCEEEEecCcccccccccccceecccceecCc
Confidence            75 488999999999743 23335567899999998

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.16  E-value=2.4e-12  Score=132.60  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=104.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC-CC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG-NG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~-~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||+...+.|.          .... ..
T Consensus        56 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~----------~~~~~~~  118 (371)
T 4exu_A           56 GSVCSAIDKRSGE-------KVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFT----------PASSLRN  118 (371)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEC----------SCSSSTT
T ss_pred             eEEEEEEECCCCC-------EEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhhee----------ccCCccc
Confidence            5677777777776       8899987653322211122 234  688899999998777662          1100 01


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..-.+.++|+|..++..++      .  ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       119 ~~~~~lv~e~~~~~l~~~~------~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----p~NIll~~-~~~~k  184 (371)
T 4exu_A          119 FYDFYLVMPFMQTDLQKIM------G--MEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLK-----PGNLAVNE-DCELK  184 (371)
T ss_dssp             CCCCEEEEECCCEEHHHHT------T--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEE
T ss_pred             ceeEEEEEccccccHHHHh------h--cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcC-----HHHeEECC-CCCEE
Confidence            1124788999987654443      2  237888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.... ..+.+++|++|+||
T Consensus       185 L~Dfg~a~~~~~-~~~~~~~t~~y~aP  210 (371)
T 4exu_A          185 ILDFGLARHADA-EMTGYVVTRWYRAP  210 (371)
T ss_dssp             ECSTTCC---------CTTCCCTTSCH
T ss_pred             EEecCccccccc-CcCCcccCccccCH
Confidence            999999984332 24567889999998

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.16  E-value=7.3e-12  Score=123.77  Aligned_cols=153  Identities=17%  Similarity=0.210  Sum_probs=106.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+...........-.+|  +++.++||||++..+.|           ....    
T Consensus        36 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~----   93 (285)
T 3is5_A           36 GDVHLVEERSSGL-------ERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVF-----------EDYH----   93 (285)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEE-----------ECSS----
T ss_pred             eEEEEEEEccCCc-------eEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhe-----------ecCC----
Confidence            6777777777777       8899887654432222222344  68889999999776655           1111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVL  484 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~  484 (512)
                      .++.+++++.. ++..++.-..  ......+...+..++.|++.++.+ |..+|+|+|||     |+||++...  .+.+
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dik-----p~NIl~~~~~~~~~~  166 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQ--ARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLK-----PENILFQDTSPHSPI  166 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHH--HHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----GGGEEESSSSTTCCE
T ss_pred             eEEEEEEeCCCCcHHHHHHhhh--hcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCC-----HHHEEEecCCCCCCE
Confidence            27889999975 6666653221  223457888999999999999999 99999999999     999999532  3679


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. ........++|..|+||
T Consensus       167 kl~Dfg~a~~~~~~~~~~~~~~t~~y~aP  195 (285)
T 3is5_A          167 KIIDFGLAELFKSDEHSTNAAGTALYMAP  195 (285)
T ss_dssp             EECCCCCCCC----------CTTGGGCCH
T ss_pred             EEEeeecceecCCcccCcCcccccCcCCh
Confidence            99999999743 23334567789999998

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.16  E-value=4.8e-12  Score=135.81  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=109.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-----------CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-----------TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAV  396 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-----------~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~al  396 (512)
                      +.|+++.++.++.       .+|+|.+.......           ..... .+|  +++.++||||++..+.|       
T Consensus        50 g~V~~~~~~~~~~-------~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-------  115 (504)
T 3q5i_A           50 GEVLLCKEKNGHS-------EKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVF-------  115 (504)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEE-------
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-------
Confidence            6777888777777       88999886543211           12222 334  68889999999877665       


Q ss_pred             hhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccc
Q psy17422        397 KDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASF  474 (512)
Q Consensus       397 k~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~n  474 (512)
                          ...    -.++.++++|.. ++..++      ..+...+...+..++.|++.++.| |..+|+|+|||     |+|
T Consensus       116 ----~~~----~~~~lv~e~~~gg~L~~~l------~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----p~N  176 (504)
T 3q5i_A          116 ----EDK----KYFYLVTEFYEGGELFEQI------INRHKFDECDAANIMKQILSGICYLHKHNIVHRDIK-----PEN  176 (504)
T ss_dssp             ----ECS----SEEEEEEECCTTCBHHHHH------HHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGG
T ss_pred             ----EcC----CEEEEEEecCCCCcHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCc-----HHH
Confidence                111    137889999975 554444      233457888999999999999999 99999999999     999


Q ss_pred             ccccCCCC--eEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        475 IHVNESKL--VLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       475 Ill~~~~~--~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++.....  .+|++|||+++.. ........++|++|+||
T Consensus       177 il~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  217 (504)
T 3q5i_A          177 ILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAP  217 (504)
T ss_dssp             EEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCH
T ss_pred             EEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCH
Confidence            99975432  6999999999733 33445678899999998

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.16  E-value=3.4e-12  Score=130.87  Aligned_cols=149  Identities=12%  Similarity=0.017  Sum_probs=103.7

Q ss_pred             cchhhh-----ccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC---CCCCCcCCchhhhhHHhhhhh
Q psy17422        331 SSVARI-----RKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA---CVNLTSKSEPFWILAKAVKDF  399 (512)
Q Consensus       331 ~~v~~~-----~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~---~~ni~~~~~~fw~l~~alk~F  399 (512)
                      +.|+++     .+..+|.       .+|+|.+...     ...+ .++  +++.++   |+|++.....+.         
T Consensus        79 g~Vy~~~~~~~~~~~~~~-------~vavK~~~~~-----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~---------  137 (365)
T 3e7e_A           79 AQVYEATQGDLNDAKNKQ-------KFVLKVQKPA-----NPWEFYIGTQLMERLKPSMQHMFMKFYSAHL---------  137 (365)
T ss_dssp             EEEEEEEC-------CCC-------CEEEEEESSC-----CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEE---------
T ss_pred             EEEEEEEecCCcccccCc-------EEEEEEeCCC-----ChhHHHHHHHHHHHhhhhhhhhhhhhheeee---------
Confidence            567777     3445555       7888887532     1222 222  445554   788886555441         


Q ss_pred             hhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        400 VDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       400 ~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                        .. .   ..+.+|++|. .++..++...... .....+...+..++.|++.+|.| |..+|+|||||     |+||++
T Consensus       138 --~~-~---~~~lv~e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiK-----p~NIll  205 (365)
T 3e7e_A          138 --FQ-N---GSVLVGELYSYGTLLNAINLYKNT-PEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIK-----PDNFIL  205 (365)
T ss_dssp             --CS-S---CEEEEECCCCSCBHHHHHHHHHTS-TTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS-----GGGEEE
T ss_pred             --cC-C---CcEEEEeccCCCcHHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCC-----HHHEEe
Confidence              11 1   2689999997 6777777644322 22347888999999999999999 99999999999     999999


Q ss_pred             cCC----------CCeEEEecCCCCCC----CCCCCccCeeeeeeeccC
Q psy17422        478 NES----------KLVLKLCDFGSASW----SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~----------~~~~Kl~DfGlar~----~~~~~~t~yv~tr~YraP  512 (512)
                      ...          .+.+|++|||+|+.    ......+..+||.+|+||
T Consensus       206 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aP  254 (365)
T 3e7e_A          206 GNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCV  254 (365)
T ss_dssp             CGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCH
T ss_pred             cccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCCh
Confidence            751          47899999999962    223446778999999998

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.16  E-value=3.3e-12  Score=126.80  Aligned_cols=150  Identities=16%  Similarity=0.117  Sum_probs=105.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-------------------------CCchHHHH--HHhhCCCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-------------------------TVPSSVAS--ILNDNACVNLT  383 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-------------------------~i~~~~~e--ll~~~~~~ni~  383 (512)
                      +.|+++.+..+|.       .+|+|.+.......                         ....-.+|  +++.++||||+
T Consensus        27 g~Vy~a~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   99 (298)
T 2zv2_A           27 GVVKLAYNENDNT-------YYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVV   99 (298)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTBC
T ss_pred             EEEEEEEECCCCc-------EEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCCC
Confidence            5677777777776       78888875432100                         11112344  68889999999


Q ss_pred             cCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCCh
Q psy17422        384 SKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITE  462 (512)
Q Consensus       384 ~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~h  462 (512)
                      +..+.|.          ..   ..-.++.+++++...+     |..+ ......+...+..++.|++.++.+ |..+|+|
T Consensus       100 ~~~~~~~----------~~---~~~~~~lv~e~~~~~~-----l~~~-~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH  160 (298)
T 2zv2_A          100 KLVEVLD----------DP---NEDHLYMVFELVNQGP-----VMEV-PTLKPLSEDQARFYFQDLIKGIEYLHYQKIIH  160 (298)
T ss_dssp             CEEEEEE----------CS---SSSEEEEEEECCTTCB-----SCCS-SCSSCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             eEEEEEE----------cC---CCCEEEEEEecCCCCc-----HHHH-hhcCCCCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            8766551          11   1123788999987432     2222 223357888999999999999999 9999999


Q ss_pred             HHHHhhccccccccccCCCCeEEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        463 AQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       463 rdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||     |+||++.. .+.+|++|||+++...  .......++|+.|+||
T Consensus       161 ~Dlk-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  206 (298)
T 2zv2_A          161 RDIK-----PSNLLVGE-DGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAP  206 (298)
T ss_dssp             CCCC-----GGGEEECT-TSCEEECCCTTCEECSSSSCEECCCCSCGGGCCG
T ss_pred             cCCC-----HHHEEECC-CCCEEEecCCCccccccccccccCCcCCccccCh
Confidence            9999     99999975 4889999999987432  2334567899999998

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.15  E-value=1.9e-12  Score=127.49  Aligned_cols=152  Identities=17%  Similarity=0.230  Sum_probs=100.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+..............+   +++..+||||+...+.|.           ..+   
T Consensus        21 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----------~~~---   79 (290)
T 3fme_A           21 GVVEKMRHVPSGQ-------IMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----------REG---   79 (290)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----------CSS---
T ss_pred             eEEEEEEecCCCe-------EEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----------ccC---
Confidence            5677777777777       8899987543211111111222   467789999997766551           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++|+|..++..++.  .........+...+..++.|++.++.+ |.+ +|+|+|||     |+||++.. .+.+|
T Consensus        80 -~~~lv~e~~~~~l~~~l~--~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlk-----p~Nil~~~-~~~~k  150 (290)
T 3fme_A           80 -DVWICMELMDTSLDKFYK--QVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVK-----PSNVLINA-LGQVK  150 (290)
T ss_dssp             -SEEEEEECCSEEHHHHHH--HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCS-----GGGCEECT-TCCEE
T ss_pred             -CEEEEEehhccchHHHHH--HHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCC-----HHHEEECC-CCCEE
Confidence             278999999877666653  333344568889999999999999999 998 99999999     99999975 48899


Q ss_pred             EecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++... ........+|+.|+||
T Consensus       151 l~Dfg~~~~~~~~~~~~~~~~t~~y~aP  178 (290)
T 3fme_A          151 MCDFGISGYLVDDVAKDIDAGCKPYMAP  178 (290)
T ss_dssp             BCCC---------------CCCCCCSCH
T ss_pred             EeecCCcccccccccccccCCCccccCh
Confidence            99999987432 2223445789999998

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.14  E-value=3.3e-12  Score=129.06  Aligned_cols=149  Identities=22%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..++||||+...+.|           ...+   
T Consensus        39 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~---   97 (331)
T 4aaa_A           39 GMVMKCRNKDTGR-------IVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVC-----------KKKK---   97 (331)
T ss_dssp             SSEEEEEETTTCC-------EEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------EETT---
T ss_pred             EEEEEEEECCCCc-------eEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEe-----------ecCC---
Confidence            5677777777777       7899877543211111111 234  68889999999776655           1111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.+++++..++...+     .......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        98 -~~~lv~e~~~~~~l~~~-----~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk-----p~Nil~~~-~~~~kl  165 (331)
T 4aaa_A           98 -RWYLVFEFVDHTILDDL-----ELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIK-----PENILVSQ-SGVVKL  165 (331)
T ss_dssp             -EEEEEEECCSEEHHHHH-----HHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCEEE
T ss_pred             -EEEEEEecCCcchHHHH-----HhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcC-----hheEEEcC-CCcEEE
Confidence             26789999986553322     2223457889999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..  ........++|.+|+||
T Consensus       166 ~Dfg~~~~~~~~~~~~~~~~~t~~y~aP  193 (331)
T 4aaa_A          166 CDFGFARTLAAPGEVYDDEVATRWYRAP  193 (331)
T ss_dssp             CCCTTC------------CCCCCTTCCH
T ss_pred             EeCCCceeecCCccccCCCcCCccccCc
Confidence            999999742  23344567889999998

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.14  E-value=5.1e-12  Score=125.14  Aligned_cols=150  Identities=23%  Similarity=0.274  Sum_probs=108.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  +++.++||||++..+.|.           .++   
T Consensus        17 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~---   75 (299)
T 2r3i_A           17 GVVYKARNKLTGE-------VVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-----------TEN---   75 (299)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEE-----------ETT---
T ss_pred             eeEEEEEEcCCCc-------eEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEe-----------cCC---
Confidence            5677777777777       8899987654433333334 344  688899999998766552           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                       .++.+++++..++..++....    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        76 -~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~kl  144 (299)
T 2r3i_A           76 -KLYLVFEFLHQDLKKFMDASA----LTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK-----PQNLLINT-EGAIKL  144 (299)
T ss_dssp             -EEEEEEECCSEEHHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCEEE
T ss_pred             -ceEEEEEcccCCHHHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC-----HHHeEEcC-CCCEEE
Confidence             278899999877766664321    1346788899999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.  .+.......++|.+|+||
T Consensus       145 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (299)
T 2r3i_A          145 ADFGLARAFGVPVRTYTHEVVTLWYRAP  172 (299)
T ss_dssp             CSTTHHHHHCCCSBCTTSCBCCCTTCCH
T ss_pred             CcchhhhhccCCccccCcccccccccCc
Confidence            99999863  223344567889999998

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.14  E-value=3.9e-12  Score=129.68  Aligned_cols=150  Identities=23%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC-CC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG-NG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~-~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||+...+.|.          .... ..
T Consensus        38 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~~~~  100 (353)
T 3coi_A           38 GSVCSAIDKRSGE-------KVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFT----------PASSLRN  100 (353)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEC----------SCSSGGG
T ss_pred             eEEEEEEECCCCC-------EEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEe----------ccccccc
Confidence            6777888777777       8899987654322211122 234  688899999998776652          1000 00


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...++.++|++..++..++      ..  ..+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       101 ~~~~~lv~e~~~~~l~~~~------~~--~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlk-----p~NIl~~~-~~~~k  166 (353)
T 3coi_A          101 FYDFYLVMPFMQTDLQKIM------GL--KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLK-----PGNLAVNE-DCELK  166 (353)
T ss_dssp             CCCCEEEEECCSEEGGGTT------TS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC-----GGGEEECT-TCCEE
T ss_pred             ceeEEEEeccccCCHHHHh------cC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEeECC-CCcEE
Confidence            1225788999986554433      22  37888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.... ..+.+++|++|+||
T Consensus       167 l~Dfg~~~~~~~-~~~~~~~t~~y~aP  192 (353)
T 3coi_A          167 ILDFGLARHADA-EMTGYVVTRWYRAP  192 (353)
T ss_dssp             ECSTTCTTC---------CCSBCCSCH
T ss_pred             EeecccccCCCC-CccccccCcCcCCH
Confidence            999999985332 24567899999998

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.14  E-value=5.6e-12  Score=128.17  Aligned_cols=148  Identities=20%  Similarity=0.235  Sum_probs=109.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-------CCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-------TVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVD  401 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-------~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~  401 (512)
                      +.|+++.+..+|.       .+|+|.+.......       ....-.+|  +++.++||||++..+.|           .
T Consensus        38 g~Vy~a~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~-----------~   99 (335)
T 3dls_A           38 GFVWTAVDKEKNK-------EVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF-----------E   99 (335)
T ss_dssp             CSEEEEEETTTTE-------EEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE-----------E
T ss_pred             EEEEEEEECCCCc-------EEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------e
Confidence            6788888887777       89999876542211       11111223  68889999999876655           1


Q ss_pred             cCCCCCcceeEEeccccC--ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc
Q psy17422        402 NEGNGNLPLRGSLPDMTA--DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN  478 (512)
Q Consensus       402 ~~~~~~lPl~~~lpdm~~--d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~  478 (512)
                      ..+    .++.+++++..  ++..++      +.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.
T Consensus       100 ~~~----~~~lv~e~~~~g~~l~~~~------~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll~  164 (335)
T 3dls_A          100 NQG----FFQLVMEKHGSGLDLFAFI------DRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIK-----DENIVIA  164 (335)
T ss_dssp             CSS----EEEEEEECCTTSCBHHHHH------HTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEC
T ss_pred             eCC----EEEEEEEeCCCCccHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccC-----HHHEEEc
Confidence            111    26788898864  444443      344457888999999999999999 99999999999     9999997


Q ss_pred             CCCCeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        479 ESKLVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~~~~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      . .+.+|++|||+++.. .......+++|..|+||
T Consensus       165 ~-~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aP  198 (335)
T 3dls_A          165 E-DFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAP  198 (335)
T ss_dssp             T-TSCEEECCCTTCEECCTTCCBCEECSCGGGCCH
T ss_pred             C-CCcEEEeecccceECCCCCceeccCCCccccCh
Confidence            5 489999999999743 33345567899999998

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.14  E-value=3.5e-12  Score=130.49  Aligned_cols=147  Identities=18%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .+|  ++..++||||+...+.|.           ..+  
T Consensus        68 g~Vy~a~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----------~~~--  127 (348)
T 1u5q_A           68 GAVYFARDVRNSE-------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL-----------REH--  127 (348)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------ETT--
T ss_pred             EEEEEEEEccCCe-------EEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----------ECC--
Confidence            6677777777776       88999875421110 00011 234  688899999997766551           111  


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        .++.++++|..++..++..     .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       128 --~~~lv~e~~~g~l~~~l~~-----~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~k  194 (348)
T 1u5q_A          128 --TAWLVMEYCLGSASDLLEV-----HKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK-----AGNILLSE-PGLVK  194 (348)
T ss_dssp             --EEEEEEECCSEEHHHHHHH-----HTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS-----GGGEEEET-TTEEE
T ss_pred             --eEEEEEecCCCCHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----HHHEEECC-CCCEE
Confidence              3788999998776655532     23457888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....  ...+++|++|+||
T Consensus       195 L~DfG~a~~~~~--~~~~~gt~~y~aP  219 (348)
T 1u5q_A          195 LGDFGSASIMAP--ANSFVGTPYWMAP  219 (348)
T ss_dssp             ECCCTTCBSSSS--BCCCCSCGGGCCH
T ss_pred             EeeccCceecCC--CCcccCCcceeCH
Confidence            999999875432  2457899999998

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.12  E-value=2.8e-12  Score=128.36  Aligned_cols=152  Identities=12%  Similarity=0.042  Sum_probs=100.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .+|  ++..++||||++..+.+.          ... ..
T Consensus        26 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----------~~~-~~   87 (311)
T 3ork_A           26 SEVHLARDLRDHR-------DVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGE----------AET-PA   87 (311)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEE----------EEE-TT
T ss_pred             EEEEEEEECCCCc-------eEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeee----------ccC-CC
Confidence            5677777777776       88999876532211 11111 233  467788999997665541          111 11


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      ..-++.+++++. .++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~  155 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVH------TEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK-----PANIMISA-TNAV  155 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEEET-TSCE
T ss_pred             CcccEEEEecCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCC-----HHHEEEcC-CCCE
Confidence            112478899996 46666554      33357888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCC-----CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE-----NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~-----~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....     ......++|..|+||
T Consensus       156 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aP  188 (311)
T 3ork_A          156 KVMDFGIARAIADSGNSVTQTAAVIGTAQYLSP  188 (311)
T ss_dssp             EECCCSCC------------------CCTTCCH
T ss_pred             EEeeccCcccccccccccccccccCcCcccCCH
Confidence            9999999873211     123456899999998

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.11  E-value=5.6e-12  Score=123.85  Aligned_cols=148  Identities=16%  Similarity=0.088  Sum_probs=103.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.++.       .+|+|.+.... ........ .+|  +++.++||||+...+.|           ...   
T Consensus        23 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~---   81 (279)
T 3fdn_A           23 GNVYLAREKQSKF-------ILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF-----------HDA---   81 (279)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECS---
T ss_pred             eEEEEEEEccCCc-------EEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheE-----------ecC---
Confidence            5677888877777       78888764322 11122222 233  68888999999766655           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.+++++.. ++..++      +.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        82 -~~~~lv~e~~~~~~l~~~l------~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlk-----p~Nili~~-~~~~  148 (279)
T 3fdn_A           82 -TRVYLILEYAPLGTVYREL------QKLSKFDEQRTATYITELANALSYCHSKRVIHRDIK-----PENLLLGS-AGEL  148 (279)
T ss_dssp             -SEEEEEECCCTTEEHHHHH------HHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCC-----GGGEEECT-TSCE
T ss_pred             -CEEEEEEecCCCCcHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCC-----hHhEEEcC-CCCE
Confidence             127788999974 444444      233457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||++...........++|..|+||
T Consensus       149 ~l~Dfg~~~~~~~~~~~~~~~~~~y~aP  176 (279)
T 3fdn_A          149 KIADFGWSVHAPSSRRTDLCGTLDYLPP  176 (279)
T ss_dssp             EECSCCEESCC--------CCCCTTCCH
T ss_pred             EEEeccccccCCcccccccCCCCCccCH
Confidence            9999999875544445667889999987

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.10  E-value=4.1e-12  Score=126.86  Aligned_cols=147  Identities=12%  Similarity=0.078  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...-  ...... .+|  ++..++||||++..+.|.           ..    
T Consensus        24 g~V~~~~~~~~~~-------~va~K~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------~~----   79 (310)
T 3s95_A           24 GQAIKVTHRETGE-------VMVMKELIRFD--EETQRTFLKEVKVMRCLEHPNVLKFIGVLY-----------KD----   79 (310)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEESCCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----------ET----
T ss_pred             EEEEEEEECCCCc-------EEEEEEeccCC--HHHHHHHHHHHHHHHhCCCcCcccEEEEEe-----------cC----
Confidence            6678888877777       78888763310  011111 233  688899999998766552           11    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.++++|.. ++..+++-.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlk-----p~Nil~~~-~~~~k  148 (310)
T 3s95_A           80 KRLNFITEYIKGGTLRGIIKSM-----DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLN-----SHNCLVRE-NKNVV  148 (310)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHC-----CTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----TTSEEECT-TSCEE
T ss_pred             CeeEEEEEecCCCcHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC-----cCeEEECC-CCCEE
Confidence            127789999975 666665421     2347888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCC----------------CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE----------------NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~----------------~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....                ......+||..|+||
T Consensus       149 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (310)
T 3s95_A          149 VADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAP  191 (310)
T ss_dssp             ECCCTTCEECC--------------------CCCCSCGGGCCH
T ss_pred             EeecccceecccccccccccccccccccccccccCCCcceeCH
Confidence            999999862211                111257899999998

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.10  E-value=1e-11  Score=121.60  Aligned_cols=147  Identities=14%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.++.       .+|+|.+.......  ... .+|  +++.++||||+...+.|           ...    
T Consensus        23 g~V~~~~~~~~~~-------~~a~k~~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~----   78 (277)
T 3f3z_A           23 GEVKIAVQKGTRI-------RRAAKKIPKYFVED--VDRFKQEIEIMKSLDHPNIIRLYETF-----------EDN----   78 (277)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGCSC--HHHHHHHHHHHHTCCCTTBCCEEEEE-----------ECS----
T ss_pred             EEEEEEEeCCCCc-------EEEEEeehhhccch--HHHHHHHHHHHHhCCCCCEeeEEEEE-----------ecC----
Confidence            6677787777776       78888876543221  122 334  68889999999776655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc--CCCCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN--ESKLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~--~~~~~  483 (512)
                      -.++.+++++.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.  ...+.
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~------~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlk-----p~Nil~~~~~~~~~  147 (277)
T 3f3z_A           79 TDIYLVMELCTGGELFERVV------HKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLK-----PENFLFLTDSPDSP  147 (277)
T ss_dssp             SEEEEEEECCCSCBHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESSSSTTCC
T ss_pred             CeEEEEEeccCCCcHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC-----HHHEEEecCCCCCc
Confidence            127789999975 5544443      33447888999999999999999 99999999999     9999983  23478


Q ss_pred             EEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++. .+.......++|+.|+||
T Consensus       148 ~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aP  177 (277)
T 3f3z_A          148 LKLIDFGLAARFKPGKMMRTKVGTPYYVSP  177 (277)
T ss_dssp             EEECCCTTCEECCTTSCBCCCCSCTTTCCH
T ss_pred             EEEEecccceeccCccchhccCCCCCccCh
Confidence            99999999873 333445567899999998

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.10  E-value=2.4e-12  Score=131.51  Aligned_cols=147  Identities=18%  Similarity=0.331  Sum_probs=104.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+...... ..... .+|  ++..++||||+...+.|.           ..+   
T Consensus        47 g~V~~~~~~~~~~-------~va~K~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~---  104 (360)
T 3eqc_A           47 GVVFKVSHKPSGL-------VMARKLIHLEIKP-AIRNQIIRELQVLHECNSPYIVGFYGAFY-----------SDG---  104 (360)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEECCCCH-HHHHHHHHHHGGGGGCCCTTBCCEEEEEE-----------ETT---
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccccCH-HHHHHHHHHHHHHHHCCCCCEEEEeEEEE-----------ECC---
Confidence            5677777777776       7888877543211 11111 344  578889999998766551           111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       .++.++++|.. ++..++.      .....+...+..++.|++.++.+ |.. +|+|+|||     |+||++.. .+.+
T Consensus       105 -~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlk-----p~Nil~~~-~~~~  171 (360)
T 3eqc_A          105 -EISICMEHMDGGSLDQVLK------KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK-----PSNILVNS-RGEI  171 (360)
T ss_dssp             -EEEEEECCCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCS-----GGGEEECT-TCCE
T ss_pred             -EEEEEEECCCCCCHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCcc-----HHHEEECC-CCCE
Confidence             27889999975 6665553      33357888999999999999999 985 99999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.........+++|+.|+||
T Consensus       172 kl~Dfg~~~~~~~~~~~~~~gt~~y~aP  199 (360)
T 3eqc_A          172 KLCDFGVSGQLIDSMANSFVGTRSYMSP  199 (360)
T ss_dssp             EECCCCCCHHHHHHC----CCCCTTCCH
T ss_pred             EEEECCCCcccccccccCCCCCCCeECH
Confidence            9999999873322334567899999998

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.09  E-value=1.4e-11  Score=123.93  Aligned_cols=149  Identities=18%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC---C-chH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT---V-PSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~---i-~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++.+|.       .+|+|.+........   . ... .+|  ++..++||||+...+.|           ...
T Consensus        26 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~   87 (321)
T 2a2a_A           26 AIVKKCREKSTGL-------EYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVY-----------ENR   87 (321)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECS
T ss_pred             EEEEEEEECCCCe-------EEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEE-----------ecC
Confidence            6788888888887       889998765432211   1 122 234  68889999999766655           111


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                          -.++.+++++. .++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++....
T Consensus        88 ----~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dik-----p~NIl~~~~~  152 (321)
T 2a2a_A           88 ----TDVVLILELVSGGELFDFLA------QKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLK-----PENIMLLDKN  152 (321)
T ss_dssp             ----SEEEEEECCCCSCBHHHHHH------TCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESCTT
T ss_pred             ----CEEEEEEEcCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----hHHEEEecCC
Confidence                12788999996 56666553      33446788999999999999999 99999999999     9999997542


Q ss_pred             C---eEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 L---VLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~---~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      .   .+|++|||+++.. ........++|+.|+||
T Consensus       153 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aP  187 (321)
T 2a2a_A          153 IPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAP  187 (321)
T ss_dssp             SSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCH
T ss_pred             CCcCCEEEccCccceecCccccccccCCCCCccCc
Confidence            2   7999999998743 23345567899999998

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.09  E-value=1e-11  Score=122.00  Aligned_cols=149  Identities=18%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.|           ...    
T Consensus        20 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~----   77 (284)
T 3kk8_A           20 SVVRRCVHKTTGL-------EFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI-----------QEE----   77 (284)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECS----
T ss_pred             eEEEEEEEcCCCc-------eEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEE-----------EcC----
Confidence            5678888888887       8898887543221111111 233  68889999999766554           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~  483 (512)
                      -..+.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++...  .+.
T Consensus        78 ~~~~~v~e~~~~~~l~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik-----p~Nil~~~~~~~~~  146 (284)
T 3kk8_A           78 SFHYLVFDLVTGGELFEDIV------AREFYSEADASHCIQQILESIAYCHSNGIVHRNLK-----PENLLLASKAKGAA  146 (284)
T ss_dssp             SEEEEEECCCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEESSSSTTCC
T ss_pred             CEEEEEEecCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCC-----HHHEEEecCCCCCc
Confidence            126788999975 4444443      33447888999999999999999 99999999999     999999643  235


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. .......+.+|+.|+||
T Consensus       147 ~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aP  176 (284)
T 3kk8_A          147 VKLADFGLAIEVNDSEAWHGFAGTPGYLSP  176 (284)
T ss_dssp             EEECCCTTCEECCSSCBCCCSCSCGGGCCH
T ss_pred             EEEeeceeeEEcccCccccCCCCCcCCcCc
Confidence            999999998733 23334567899999998

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.09  E-value=9.9e-12  Score=125.45  Aligned_cols=148  Identities=11%  Similarity=-0.051  Sum_probs=107.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      +.|+++.+..+|.       .+|+|.+........+..+ .++++.+ +|+||+.....+           ....    .
T Consensus        23 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~E-~~~l~~l~~h~~i~~~~~~~-----------~~~~----~   79 (330)
T 2izr_A           23 GELRLGKNLYTNE-------YVAIKLEPMKSRAPQLHLE-YRFYKQLGSGDGIPQVYYFG-----------PCGK----Y   79 (330)
T ss_dssp             TSEEEEEETTTTE-------EEEEEEEETTCSSCCHHHH-HHHHHHHCSCTTSCCEEEEE-----------EETT----E
T ss_pred             ceEEEEEECCCCc-------EEEEEEeccccchHHHHHH-HHHHHHhhCCCCCCEEEEEE-----------ecCC----c
Confidence            6677777777776       8899977543222222122 1257777 899999765544           1111    2


Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe-----
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV-----  483 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~-----  483 (512)
                      ++.+++++..++..++...     ....+...+..++.|++.++.+ |..+|+|||||     |+||++... +.     
T Consensus        80 ~~lv~e~~~~~L~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlk-----p~Nill~~~-~~~~~~~  148 (330)
T 2izr_A           80 NAMVLELLGPSLEDLFDLC-----DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVK-----PENFLIGRP-GNKTQQV  148 (330)
T ss_dssp             EEEEEECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECCG-GGTCTTS
T ss_pred             cEEEEEeCCCCHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----HHHeeeccC-CCCCCce
Confidence            6789999977877776532     2357889999999999999999 99999999999     999999754 44     


Q ss_pred             EEEecCCCCCCC--CC-------CCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HE-------NEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~-------~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  ..       ......+||..|+||
T Consensus       149 ~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  186 (330)
T 2izr_A          149 IHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSI  186 (330)
T ss_dssp             EEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCH
T ss_pred             EEEEEcccceeeecCCCCccccccccCCcCCCccccCh
Confidence            999999998732  11       113567899999998

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.09  E-value=7.2e-12  Score=129.35  Aligned_cols=149  Identities=17%  Similarity=0.139  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++..+.+|.       .+|+|.+...........-.+|  +|+.++||||++....+           ..    .-
T Consensus       128 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----------~~----~~  185 (377)
T 3cbl_A          128 GEVFSGRLRADNT-------LVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC-----------TQ----KQ  185 (377)
T ss_dssp             EEEEEEEETTTCC-------EEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEE-----------CS----SS
T ss_pred             CeEEEEEEecCCe-------EEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-----------ec----CC
Confidence            5677777776666       8899987543211000011233  68889999999776655           11    12


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      +++.++|+|. .++..+++-.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus       186 ~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk-----p~Nil~~~-~~~~kl  254 (377)
T 3cbl_A          186 PIYIVMELVQGGDFLTFLRTE-----GARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLA-----ARNCLVTE-KNVLKI  254 (377)
T ss_dssp             SCEEEEECCTTCBHHHHHHHH-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccC-----HHHEEEcC-CCcEEE
Confidence            4889999997 5777776422     2347888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCCCCCc----cCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEI----TPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~----t~yv~tr~YraP  512 (512)
                      +|||+++......+    ....++..|+||
T Consensus       255 ~DfG~s~~~~~~~~~~~~~~~~~~~~y~aP  284 (377)
T 3cbl_A          255 SDFGMSREEADGVYAASGGLRQVPVKWTAP  284 (377)
T ss_dssp             CCGGGCEECTTSEEECCSSCCEEEGGGSCH
T ss_pred             CcCCCceecCCCceeecCCCCCCCcCcCCH
Confidence            99999874332211    223456678887

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.09  E-value=4.6e-12  Score=131.78  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=107.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.......  ... .+|  +|..++||||+...+.|           ...    
T Consensus        65 g~Vy~~~~~~~~~-------~~a~K~~~~~~~~~--~~~~~~E~~il~~l~hpnIv~~~~~~-----------~~~----  120 (387)
T 1kob_A           65 GVVHRCVEKATGR-------VFVAKFINTPYPLD--KYTVKNEISIMNQLHHPKLINLHDAF-----------EDK----  120 (387)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECCSHHH--HHHHHHHHHHHTTCCSTTBCCEEEEE-----------ECS----
T ss_pred             EEEEEEEECCCCC-------EEEEEEecccchhh--HHHHHHHHHHHHhCCCcCCCeEEEEE-----------EeC----
Confidence            6788888888887       78888765321100  011 233  68889999999876665           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC-CCCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE-SKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~-~~~~~  484 (512)
                      -.++.++++|.. ++..++.     ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. ..+.+
T Consensus       121 ~~~~lv~E~~~gg~L~~~l~-----~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlk-----p~NIll~~~~~~~v  190 (387)
T 1kob_A          121 YEMVLILEFLSGGELFDRIA-----AEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIK-----PENIMCETKKASSV  190 (387)
T ss_dssp             SEEEEEEECCCCCBHHHHTT-----CTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSTTCCCE
T ss_pred             CEEEEEEEcCCCCcHHHHHH-----hhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccc-----hHHeEEecCCCCce
Confidence            137889999975 5544432     122347888999999999999999 99999999999     99999964 34679


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. ........++|..|+||
T Consensus       191 kL~DFG~a~~~~~~~~~~~~~gt~~y~aP  219 (387)
T 1kob_A          191 KIIDFGLATKLNPDEIVKVTTATAEFAAP  219 (387)
T ss_dssp             EECCCTTCEECCTTSCEEEECSSGGGCCH
T ss_pred             EEEecccceecCCCcceeeeccCCCccCc
Confidence            99999999743 33344567899999998

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.09  E-value=3.6e-12  Score=131.25  Aligned_cols=142  Identities=13%  Similarity=0.020  Sum_probs=98.1

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++||||++..+.|.          + .    -+++.++++|.. ++..+++-
T Consensus       103 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----------~-~----~~~~lv~e~~~~g~L~~~l~~  167 (367)
T 3l9p_A          103 QVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----------Q-S----LPRFILLELMAGGDLKSFLRE  167 (367)
T ss_dssp             EEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----------S-S----SSCEEEEECCTTEEHHHHHHH
T ss_pred             eEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe----------c-C----CCCEEEEEeCCCCCHHHHHHh
Confidence            7899987532211111111344  688899999997766551          1 1    236789999964 77777754


Q ss_pred             HHhh-hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEEecCCCCCCC----CCCC
Q psy17422        428 QQLY-RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKLCDFGSASWS----HENE  499 (512)
Q Consensus       428 ~~iy-~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl~DfGlar~~----~~~~  499 (512)
                      .... ......+...+..++.|++.++.+ |..+|+|||||     |+||++...  ...+|++|||+++..    ....
T Consensus       168 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~  242 (367)
T 3l9p_A          168 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIA-----ARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRK  242 (367)
T ss_dssp             HSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTT
T ss_pred             hccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----hhhEEEecCCCCceEEECCCcccccccccccccc
Confidence            3321 122347888899999999999999 99999999999     999999742  236999999998621    1122


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      ....++|..|+||
T Consensus       243 ~~~~~~t~~y~aP  255 (367)
T 3l9p_A          243 GGCAMLPVKWMPP  255 (367)
T ss_dssp             CCGGGSCGGGCCH
T ss_pred             CCCcCCcccEECH
Confidence            3345678899998

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.09  E-value=1.4e-11  Score=124.38  Aligned_cols=145  Identities=16%  Similarity=0.193  Sum_probs=106.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.....  ..... .+|  ++..++|+||+.....|.           ..+   
T Consensus        59 g~V~~a~~~~~g~-------~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----------~~~---  115 (321)
T 2c30_A           59 GIVCLAREKHSGR-------QVAVKMMDLRKQ--QRRELLFNEVVIMRDYQHFNVVEMYKSYL-----------VGE---  115 (321)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEETTTC--CSHHHHHHHHHHHTTCCCTTBCCEEEEEE-----------ETT---
T ss_pred             eEEEEEEECCCCc-------EEEEEEEeccch--hHHHHHHHHHHHHHhCCCCCcceEEEEEE-----------ECC---
Confidence            5677777777776       899998754321  11122 344  688899999997665541           111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++++|.. ++..++.       +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       116 -~~~lv~e~~~~~~L~~~l~-------~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll~~-~~~~k  181 (321)
T 2c30_A          116 -ELWVLMEFLQGGALTDIVS-------QVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIK-----SDSILLTL-DGRVK  181 (321)
T ss_dssp             -EEEEEECCCCSCBHHHHHT-------TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEE
T ss_pred             -EEEEEEecCCCCCHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEECC-CCcEE
Confidence             27889999975 4444432       2357888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...  ......+++|+.|+||
T Consensus       182 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  210 (321)
T 2c30_A          182 LSDFGFCAQISKDVPKRKSLVGTPYWMAP  210 (321)
T ss_dssp             ECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred             EeeeeeeeecccCccccccccCCccccCH
Confidence            99999987322  2234567899999998

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.09  E-value=1.7e-11  Score=122.40  Aligned_cols=147  Identities=18%  Similarity=0.110  Sum_probs=103.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....  ...... .+|  ++.. .+||||++..+.|.           ..+  
T Consensus        27 g~V~~~~~~~~~~-------~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----------~~~--   84 (316)
T 2ac3_A           27 ARVQTCINLITSQ-------EYAVKIIEKQP--GHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----------EED--   84 (316)
T ss_dssp             EEEEEEECSSSCC-------EEEEEEEECCS--SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------ETT--
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEeeCc--chhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----------eCC--
Confidence            6788888888887       89999876431  222222 344  4555 57999998766551           111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC--C
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK--L  482 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~--~  482 (512)
                        .++.++++|. .++..++.-      ....+...+..++.|++.++.+ |..+|+|+|||     |+||++....  .
T Consensus        85 --~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk-----p~Nil~~~~~~~~  151 (316)
T 2ac3_A           85 --RFYLVFEKMRGGSILSHIHK------RRHFNELEASVVVQDVASALDFLHNKGIAHRDLK-----PENILCEHPNQVS  151 (316)
T ss_dssp             --EEEEEEECCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEESCSSSSC
T ss_pred             --EEEEEEEcCCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCC-----HHHEEEccCCCcC
Confidence              2789999997 566666542      2347888999999999999999 99999999999     9999997542  2


Q ss_pred             eEEEecCCCCCCCC---------CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH---------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~---------~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++...         .......++|+.|+||
T Consensus       152 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  190 (316)
T 2ac3_A          152 PVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAP  190 (316)
T ss_dssp             SEEECCTTCCC-------------------CCSGGGCCH
T ss_pred             ceEEEEccCccccccCCccccccccccccccCCcCccCh
Confidence            38999999987321         1123456799999998

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.08  E-value=6.1e-12  Score=130.02  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=107.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.....  .-... .+|  ++..++||||+...+.|           ...    
T Consensus       103 g~Vy~a~~~~~g~-------~vavK~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~-----------~~~----  158 (373)
T 2x4f_A          103 GQVHKCEETATGL-------KLAAKIIKTRGM--KDKEEVKNEISVMNQLDHANLIQLYDAF-----------ESK----  158 (373)
T ss_dssp             -CEEEEEETTTCC-------EEEEEEEECCSH--HHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECS----
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEccccc--ccHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EEC----
Confidence            6778887777777       888887754210  01112 233  68889999999876655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc-CCCCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN-ESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~-~~~~~~  484 (512)
                      -.++.++|+|.. ++..++.     ......+...+..++.|++.++.+ |..+|+|+|||     |+||++. ...+.+
T Consensus       159 ~~~~lv~E~~~~~~L~~~l~-----~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~  228 (373)
T 2x4f_A          159 NDIVLVMEYVDGGELFDRII-----DESYNLTELDTILFMKQICEGIRHMHQMYILHLDLK-----PENILCVNRDAKQI  228 (373)
T ss_dssp             SEEEEEEECCTTCEEHHHHH-----HTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEEEETTTTEE
T ss_pred             CEEEEEEeCCCCCcHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----HHHEEEecCCCCcE
Confidence            137899999974 5555543     222347788899999999999999 99999999999     9999984 234789


Q ss_pred             EEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++. .+.......++|++|+||
T Consensus       229 kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  257 (373)
T 2x4f_A          229 KIIDFGLARRYKPREKLKVNFGTPEFLAP  257 (373)
T ss_dssp             EECCCSSCEECCTTCBCCCCCSSCTTCCH
T ss_pred             EEEeCCCceecCCccccccccCCCcEeCh
Confidence            9999999974 333445667899999998

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.08  E-value=1.6e-11  Score=124.46  Aligned_cols=148  Identities=15%  Similarity=0.053  Sum_probs=107.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC-CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+........ .... .+|  +++.++|+||++..+.|.           ..+  
T Consensus        55 g~Vy~~~~~~~~~-------~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~--  114 (335)
T 2owb_A           55 AKCFEISDADTKE-------VFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----------DND--  114 (335)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------CSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----------cCC--
Confidence            5677787777776       788887754322111 1111 233  688899999998766551           111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.++++|.. ++..++      +.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus       115 --~~~lv~e~~~~~~L~~~~------~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-----p~NIl~~~-~~~~  180 (335)
T 2owb_A          115 --FVFVVLELCRRRSLLELH------KRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLK-----LGNLFLNE-DLEV  180 (335)
T ss_dssp             --EEEEEECCCTTCBHHHHH------HHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECT-TCCE
T ss_pred             --eEEEEEecCCCCCHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCC-----chhEEEcC-CCCE
Confidence              27889999984 554443      333457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  ........++|..|+||
T Consensus       181 kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  210 (335)
T 2owb_A          181 KIGDFGLATKVEYDGERKKVLCGTPNYIAP  210 (335)
T ss_dssp             EECCCTTCEECCSTTCCBCCCCSCCSSCCH
T ss_pred             EEeeccCceecccCcccccccCCCccccCH
Confidence            99999998732  23334567889999987

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.08  E-value=9.1e-12  Score=128.43  Aligned_cols=142  Identities=15%  Similarity=0.119  Sum_probs=97.6

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      ..+|+|.+...........-.+|  +++.+ +||||++..+.|           ...    -.++.+++++.. ++..++
T Consensus       114 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~-----------~~~----~~~~lv~e~~~~g~L~~~l  178 (370)
T 2psq_A          114 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC-----------TQD----GPLYVIVEYASKGNLREYL  178 (370)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEE-----------CSS----SSCEEEEECCTTCBHHHHH
T ss_pred             eeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE-----------ccC----CCEEEEEEcCCCCCHHHHH
Confidence            35888887543211111111344  67778 899999876655           111    137899999974 777777


Q ss_pred             HhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        426 ALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       426 ~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .-....          ......+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.+|++|||+++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~~~~kl~DFG~a~~  252 (370)
T 2psq_A          179 RARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLA-----ARNVLVTE-NNVMKIADFGLARD  252 (370)
T ss_dssp             HHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECT-TCCEEECCCSSCEE
T ss_pred             HhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccc-----hhhEEECC-CCCEEEccccCCcc
Confidence            532210          011236788899999999999999 99999999999     99999975 48999999999873


Q ss_pred             CCC----CCccCeeeeeeeccC
Q psy17422        495 SHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       495 ~~~----~~~t~yv~tr~YraP  512 (512)
                      ...    .......+|..|+||
T Consensus       253 ~~~~~~~~~~~~~~~t~~y~aP  274 (370)
T 2psq_A          253 INNIDYYKKTTNGRLPVKWMAP  274 (370)
T ss_dssp             TTCCCTTCTTTTTTSCGGGCCH
T ss_pred             cCcccceecccCCCcccceECH
Confidence            211    122344667889987

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.08  E-value=1.6e-11  Score=123.79  Aligned_cols=152  Identities=7%  Similarity=0.021  Sum_probs=99.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|..++   ..+|+|.+.............+|  ++..++||||++..+.+           .. +    
T Consensus        27 g~Vy~~~~~~~~~~~~---~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-----------~~-~----   87 (325)
T 3kex_A           27 GTVHKGVWIPEGESIK---IPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLC-----------PG-S----   87 (325)
T ss_dssp             CEEEEEEECCTTCSCC---EEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEE-----------CB-S----
T ss_pred             ceEEEEEEcCCCceEE---EEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEE-----------cC-C----
Confidence            5677777766665210   11455554332222222222233  57888999999765543           11 1    


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.++++|. .++..++.-     .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        88 ~~~~v~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik-----p~Nil~~~-~~~~kl  156 (325)
T 3kex_A           88 SLQLVTQYLPLGSLLDHVRQ-----HRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLA-----ARNVLLKS-PSQVQV  156 (325)
T ss_dssp             SEEEEEECCTTCBSHHHHHS-----SGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCS-----STTEEESS-SSCEEE
T ss_pred             ccEEEEEeCCCCCHHHHHHH-----ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccc-----hheEEECC-CCeEEE
Confidence            2678899987 566555532     12346778899999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...    ....+...+|..|+||
T Consensus       157 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  186 (325)
T 3kex_A          157 ADFGVADLLPPDDKQLLYSEAKTPIKWMAL  186 (325)
T ss_dssp             CSCSGGGGSCCCTTCCC-----CCTTTSCH
T ss_pred             CCCCcccccCcccccccccCCCCcccccCh
Confidence            9999987321    2234556777789987

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.08  E-value=1.8e-11  Score=122.92  Aligned_cols=151  Identities=18%  Similarity=0.039  Sum_probs=104.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++..+ +|.       .+|+|.+...........-.+|  ++..++||||+...+.|.           ..+    
T Consensus        44 g~V~~~~~~-~~~-------~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----------~~~----  100 (326)
T 3uim_A           44 GKVYKGRLA-DGT-------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM-----------TPT----  100 (326)
T ss_dssp             SEEEEECCS-SSC-------CEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC-----------CSS----
T ss_pred             cEEEEEEec-CCC-------EEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe-----------cCC----
Confidence            556666432 344       7899988654332222222344  678889999998776551           111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC---CCChHHHHhhccccccccccCCCCe
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS---AITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~---~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      ..+.++++|.. ++..++.-.  .......+...+..++.|++.++.+ |..   +|+|+|||     |+||++.. .+.
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlk-----p~Nil~~~-~~~  172 (326)
T 3uim_A          101 ERLLVYPYMANGSVASCLRER--PESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK-----AANILLDE-EFE  172 (326)
T ss_dssp             CCEEEEECCTTCBHHHHHHCC--STTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCS-----GGGEEECT-TCC
T ss_pred             ceEEEEEeccCCCHHHHHHhc--cccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCc-----hhhEEECC-CCC
Confidence            26788999975 666665421  1222347888999999999999999 998   99999999     99999975 478


Q ss_pred             EEEecCCCCCCC---CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS---HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~---~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..   .......+++|..|+||
T Consensus       173 ~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aP  204 (326)
T 3uim_A          173 AVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAP  204 (326)
T ss_dssp             EEECCCSSCEECCSSSSCEECCCCSCGGGCCH
T ss_pred             EEeccCccccccCcccccccccccCCcCccCH
Confidence            999999998732   22234566799999998

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.08  E-value=2.2e-11  Score=121.27  Aligned_cols=147  Identities=15%  Similarity=0.118  Sum_probs=106.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.....  .-... .+|  ++..++||||+...+.|           ...    
T Consensus        23 g~V~~~~~~~~~~-------~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~----   78 (304)
T 2jam_A           23 SEVFLVKQRLTGK-------LFALKCIKKSPA--FRDSSLENEIAVLKKIKHENIVTLEDIY-----------EST----   78 (304)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEE-----------ECS----
T ss_pred             ceEEEEEECCCCC-------EEEEEEEecccc--cchHHHHHHHHHHHhCCCCCeeehhhhc-----------ccC----
Confidence            6677888777777       889988764321  11122 233  68889999999766554           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc--CCCCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN--ESKLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~--~~~~~  483 (512)
                      -.++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.  ...+.
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dik-----p~NIl~~~~~~~~~  147 (304)
T 2jam_A           79 THYYLVMQLVSGGELFDRIL------ERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLK-----PENLLYLTPEENSK  147 (304)
T ss_dssp             SEEEEEECCCCSCBHHHHHH------HHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCC-----GGGCEESSSSTTCC
T ss_pred             CEEEEEEEcCCCccHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----HHHEEEecCCCCCC
Confidence            137889999974 5555543      33457888999999999999999 99999999999     9999983  23478


Q ss_pred             EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..........++|..|+||
T Consensus       148 ~kl~Dfg~~~~~~~~~~~~~~~~~~y~aP  176 (304)
T 2jam_A          148 IMITDFGLSKMEQNGIMSTACGTPGYVAP  176 (304)
T ss_dssp             EEBCSCSTTCCCCCBTTHHHHSCCCBCCT
T ss_pred             EEEccCCcceecCCCccccccCCCCccCh
Confidence            99999999985544445566789999998

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.07  E-value=1.9e-11  Score=122.86  Aligned_cols=144  Identities=17%  Similarity=0.148  Sum_probs=103.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...    ....-.+|  +++.++ |+||+...+.+.          ..   ..
T Consensus        50 g~V~~~~~~~~~~-------~vavK~~~~~----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~----------~~---~~  105 (330)
T 3nsz_A           50 SEVFEAINITNNE-------KVVVKILKPV----KKKKIKREIKILENLRGGPNIITLADIVK----------DP---VS  105 (330)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECSC----CHHHHHHHHHHHHHHTTSTTBCCEEEEEE----------CT---TT
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccc----chHHHHHHHHHHHHcCCCCCEEEeeeeec----------cC---CC
Confidence            6777777777777       8898886521    11111344  577776 999997766551          11   11


Q ss_pred             cceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ...+.+++++... +..++      +   ..+...+..++.|++.++.+ |..+|+|+|||     |+||++......+|
T Consensus       106 ~~~~lv~e~~~~~~l~~~~------~---~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik-----p~Nil~~~~~~~~k  171 (330)
T 3nsz_A          106 RTPALVFEHVNNTDFKQLY------Q---TLTDYDIRFYMYEILKALDYCHSMGIMHRDVK-----PHNVMIDHEHRKLR  171 (330)
T ss_dssp             CCEEEEEECCCCCCHHHHG------G---GCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEETTTTEEE
T ss_pred             CceEEEEeccCchhHHHHH------H---hCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----HHHEEEcCCCCEEE
Confidence            2267889998754 33332      1   26778899999999999999 99999999999     99999976545899


Q ss_pred             EecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++. .........++|++|+||
T Consensus       172 l~Dfg~a~~~~~~~~~~~~~~~~~y~aP  199 (330)
T 3nsz_A          172 LIDWGLAEFYHPGQEYNVRVASRYFKGP  199 (330)
T ss_dssp             ECCCTTCEECCTTCCCCSCCSCGGGCCH
T ss_pred             EEeCCCceEcCCCCccccccccccccCh
Confidence            999999973 334445677899999998

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.07  E-value=5.8e-12  Score=128.48  Aligned_cols=147  Identities=20%  Similarity=0.190  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC-----CCCCCcCCchhhhhHHhhhhhhhc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA-----CVNLTSKSEPFWILAKAVKDFVDN  402 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~-----~~ni~~~~~~fw~l~~alk~F~~~  402 (512)
                      +.|+++.+..+|.       .+|+|.+....   ..... .+|  +++.+.     |+||+...+.|.           .
T Consensus        49 g~V~~~~~~~~~~-------~vavK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~-----------~  107 (360)
T 3llt_A           49 GRVLLCQHIDNKK-------YYAVKVVRNIK---KYTRSAKIEADILKKIQNDDINNNNIVKYHGKFM-----------Y  107 (360)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECSCH---HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEE-----------E
T ss_pred             eEEEEEEECCCCe-------EEEEEEeccch---hhhhhhHHHHHHHHHhcccCCCCCCeecccceee-----------E
Confidence            5677777776666       88998875311   00111 222  566665     899997766551           1


Q ss_pred             CCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--
Q psy17422        403 EGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--  479 (512)
Q Consensus       403 ~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--  479 (512)
                      .+    .++.+++++..++..++.-..    ....+...+..++.|++.+|.+ |..+|+|+|||     |+||++..  
T Consensus       108 ~~----~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~~~  174 (360)
T 3llt_A          108 YD----HMCLIFEPLGPSLYEIITRNN----YNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLK-----PENILLDDPY  174 (360)
T ss_dssp             TT----EEEEEECCCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEESCTT
T ss_pred             CC----eeEEEEcCCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----cccEEEcccc
Confidence            11    278899999878777765221    2247888999999999999999 99999999999     99999963  


Q ss_pred             ----------------------CCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        480 ----------------------SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       480 ----------------------~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                                            ..+.+|++|||+++.... .....++|+.|+||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~-~~~~~~gt~~y~aP  228 (360)
T 3llt_A          175 FEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD-YHGSIINTRQYRAP  228 (360)
T ss_dssp             CCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS-CCCSCCSCGGGCCH
T ss_pred             ccccccchhcccccccccccccCCCCEEEEeccCceecCC-CCcCccCcccccCc
Confidence                                  257899999999974322 23467889999998

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.06  E-value=1.5e-11  Score=127.69  Aligned_cols=146  Identities=16%  Similarity=0.090  Sum_probs=99.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC--CCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA--CVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~--~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+.. |.       .+|+|.+............ .+|  +|..++  |+||+...+.+.           .+. 
T Consensus        70 g~Vy~~~~~~-~~-------~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~-----------~~~-  129 (390)
T 2zmd_A           70 SKVFQVLNEK-KQ-------IYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----------TDQ-  129 (390)
T ss_dssp             EEEEEEECTT-CC-------EEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----------CSS-
T ss_pred             eEEEEEEcCC-CC-------EEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe-----------cCC-
Confidence            5566665543 54       7899887543211111111 233  566665  589997655441           111 


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         .++.+|+.+..++..++.      .+...+...+..++.|++.+|.| |..+|+|||||     |+||++.  .+.+
T Consensus       130 ---~~~lv~E~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlk-----p~NIll~--~~~~  193 (390)
T 2zmd_A          130 ---YIYMVMECGNIDLNSWLK------KKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK-----PANFLIV--DGML  193 (390)
T ss_dssp             ---EEEEEEECCSEEHHHHHH------HCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCC-----GGGEEES--SSCE
T ss_pred             ---EEEEEEecCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----HHHEEEE--CCeE
Confidence               278888865566666553      33357788899999999999999 99999999999     9999995  4789


Q ss_pred             EEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....    ......++|++|+||
T Consensus       194 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aP  225 (390)
T 2zmd_A          194 KLIDFGIANQMQPDTTSVVKDSQVGAVNYMPP  225 (390)
T ss_dssp             EECCCSSSCCC---------CCSCCCGGGCCH
T ss_pred             EEEecCccccccCCCccccCCCCCcCCCccCh
Confidence            9999999984321    123567899999998

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.06  E-value=7.6e-12  Score=127.02  Aligned_cols=152  Identities=22%  Similarity=0.216  Sum_probs=105.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.............+|  +++.++||||+.....+..     ..|     ....
T Consensus        25 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~-----~~~~   87 (353)
T 2b9h_A           25 GVVCSATHKPTGE-------IVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRP-----DSF-----ENFN   87 (353)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCC-----SCS-----TTCC
T ss_pred             eEEEEEEECCCCc-------EEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecc-----ccc-----Cccc
Confidence            5677777777776       8899887432110000111244  6888999999976543310     001     1112


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.+++++..++..++.-       ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++
T Consensus        88 ~~~lv~e~~~~~L~~~~~~-------~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlk-----p~Nil~~~-~~~~kl~  154 (353)
T 2b9h_A           88 EVYIIQELMQTDLHRVIST-------QMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLK-----PSNLLINS-NCDLKVC  154 (353)
T ss_dssp             CEEEEECCCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECT-TCCEEEC
T ss_pred             eEEEEEeccCccHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEEcC-CCcEEEE
Confidence            3788999998776655531       247888999999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCCC------------CCCccCeeeeeeeccC
Q psy17422        488 DFGSASWSH------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~------------~~~~t~yv~tr~YraP  512 (512)
                      |||+++...            ......+++|++|+||
T Consensus       155 Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (353)
T 2b9h_A          155 DFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAP  191 (353)
T ss_dssp             CCTTCEECC----------------CCCCCCGGGCCH
T ss_pred             ecccccccccccccccCccccccchhhccccccccCC
Confidence            999986221            0124457899999998

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.06  E-value=1.6e-11  Score=123.20  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+............ .+|  +++.++||||+...+.|           ...+    .++.++++|.. ++..++.
T Consensus        62 ~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~----~~~lv~e~~~~~~L~~~l~  126 (309)
T 3p86_A           62 DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV-----------TQPP----NLSIVTEYLSRGSLYRLLH  126 (309)
T ss_dssp             EEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSTT----CCEEEEECCTTCBHHHHHH
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------EECC----ceEEEEecCCCCcHHHHHh
Confidence            6888876532111110011 234  68889999999776655           1111    26789999975 6666664


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC--CCcc
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE--NEIT  501 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~--~~~t  501 (512)
                      -..   .....+...+..++.|++.++.+ |..+  |+|+|||     |+||++.. .+.+|++|||+++....  ....
T Consensus       127 ~~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dik-----p~NIll~~-~~~~kL~Dfg~a~~~~~~~~~~~  197 (309)
T 3p86_A          127 KSG---AREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLK-----SPNLLVDK-KYTVKVCDFGLSRLKASTFLSSK  197 (309)
T ss_dssp             STT---HHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCC-----GGGEEECT-TCCEEECCCC-------------
T ss_pred             hcC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCC-----hhhEEEeC-CCcEEECCCCCCccccccccccc
Confidence            221   11127788899999999999999 9999  9999999     99999975 48999999999874322  2234


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ..++|..|+||
T Consensus       198 ~~~gt~~y~aP  208 (309)
T 3p86_A          198 SAAGTPEWMAP  208 (309)
T ss_dssp             ----CCTTSCH
T ss_pred             cCCCCccccCh
Confidence            67899999998

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.06  E-value=1.6e-11  Score=120.90  Aligned_cols=148  Identities=15%  Similarity=0.070  Sum_probs=107.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..++.       .+|+|.+.... ........ .+|  ++..++|+||++..+.|.           ..   
T Consensus        28 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~---   86 (284)
T 2vgo_A           28 GNVYLAREKQNKF-------IMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----------DR---   86 (284)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------CS---
T ss_pred             eEEEEEEEcCCCc-------EEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----------cC---
Confidence            5667777766665       78888775432 11222222 233  688899999997665551           11   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        87 -~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~  153 (284)
T 2vgo_A           87 -KRIYLMLEFAPRGELYKELQ------KHGRFDEQRSATFMEELADALHYCHERKVIHRDIK-----PENLLMGY-KGEL  153 (284)
T ss_dssp             -SEEEEEECCCTTEEHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS-----GGGEEECT-TCCE
T ss_pred             -CEEEEEEEeCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----HHHEEEcC-CCCE
Confidence             137889999975 6655553      23347888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||++...........++|..|+||
T Consensus       154 kl~Dfg~~~~~~~~~~~~~~~~~~y~aP  181 (284)
T 2vgo_A          154 KIADFGWSVHAPSLRRRTMCGTLDYLPP  181 (284)
T ss_dssp             EECCCTTCEECSSSCBCCCCSCGGGCCH
T ss_pred             EEecccccccCcccccccccCCCCcCCH
Confidence            9999999874433334567889999987

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.05  E-value=2.4e-11  Score=120.17  Aligned_cols=148  Identities=15%  Similarity=0.068  Sum_probs=106.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCC-chH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTV-PSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i-~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.++.       .+|+|.+......... ... .+|  +++.++|+||++..+.|           ...+  
T Consensus        29 g~Vy~~~~~~~~~-------~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-----------~~~~--   88 (294)
T 2rku_A           29 AKCFEISDADTKE-------VFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFF-----------EDND--   88 (294)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             EEEEEEEECCCCc-------eEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeee-----------ccCC--
Confidence            6678888877777       7788877543221111 111 233  68889999999776555           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++      +.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        89 --~~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~  154 (294)
T 2rku_A           89 --FVFVVLELCRRRSLLELH------KRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLK-----LGNLFLNE-DLEV  154 (294)
T ss_dssp             --EEEEEEECCTTCBHHHHH------HHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCE
T ss_pred             --EEEEEEecCCCCCHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----hHhEEEcC-CCCE
Confidence              27889999984 544443      333457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  ........++|..|+||
T Consensus       155 kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  184 (294)
T 2rku_A          155 KIGDFGLATKVEYDGERKKVLCGTPNYIAP  184 (294)
T ss_dssp             EECCCTTCEECCSTTCCBCCCCSCCSSCCH
T ss_pred             EEEeccCceecccCccccccccCCCCcCCc
Confidence            99999998732  23334567889999987

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.05  E-value=2.2e-11  Score=119.18  Aligned_cols=151  Identities=14%  Similarity=0.058  Sum_probs=106.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..+ +||||++..+.|           ...+  
T Consensus        25 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~-----------~~~~--   84 (289)
T 1x8b_A           25 GSVFKCVKRLDGC-------IYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAW-----------AEDD--   84 (289)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEE-----------EETT--
T ss_pred             eEEEEEEEcCCCc-------eEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeee-----------ecCC--
Confidence            6788888887777       8899987653322211111 333  34555 899999776554           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC----
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES----  480 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~----  480 (512)
                        .++.++|++.. ++..++.-.  .......+...+..++.|++.++.+ |..+|+|+|||     |+||++...    
T Consensus        85 --~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dik-----p~NIl~~~~~~~~  155 (289)
T 1x8b_A           85 --HMLIQNEYCNGGSLADAISEN--YRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIK-----PSNIFISRTSIPN  155 (289)
T ss_dssp             --EEEEEEECCTTCBHHHHHHHH--HHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEC------
T ss_pred             --eEEEEEEecCCCcHHHHHHhh--cccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCC-----HHHEEEcCCCCCc
Confidence              37889999974 887777532  2223457888999999999999999 99999999999     999999632    


Q ss_pred             --------------CCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        481 --------------KLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 --------------~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                                    ...+|++|||+++.....  ....+|..|+||
T Consensus       156 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~gt~~y~aP  199 (289)
T 1x8b_A          156 AASEEGDEDDWASNKVMFKIGDLGHVTRISSP--QVEEGDSRFLAN  199 (289)
T ss_dssp             --------------CCCEEECCCTTCEETTCS--CCCCCCGGGCCH
T ss_pred             ccccccccccccCCceEEEEcccccccccCCc--cccCCCccccCh
Confidence                          246899999998743222  234588999987

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.05  E-value=1.1e-11  Score=126.00  Aligned_cols=152  Identities=17%  Similarity=0.138  Sum_probs=97.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.++.+|.       .+|+|.+...   .....++...++..+|+||+...+.|.           ....+.-.+
T Consensus        43 g~V~~~~~~~~~~-------~vavK~~~~~---~~~~~e~~~~~~~~~h~~i~~~~~~~~-----------~~~~~~~~~  101 (336)
T 3fhr_A           43 GKVLECFHRRTGQ-------KCALKLLYDS---PKARQEVDHHWQASGGPHIVCILDVYE-----------NMHHGKRCL  101 (336)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEESS---HHHHHHHHHHHHHTTSTTBCCEEEEEE-----------EEETTEEEE
T ss_pred             eEEEEEEECCCCC-------EEEEEEecCc---HHHHHHHHHHHHhcCCCChHHHHHHHh-----------hccCCCceE
Confidence            6788888888887       8899987431   111122333567789999997766552           111112236


Q ss_pred             eEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEE
Q psy17422        411 RGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKL  486 (512)
Q Consensus       411 ~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl  486 (512)
                      +.++++|.. ++..++.-.    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++...  .+.+|+
T Consensus       102 ~lv~e~~~gg~L~~~l~~~----~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlk-----p~NIll~~~~~~~~~kl  172 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQER----GDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVK-----PENLLYTSKEKDAVLKL  172 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-----CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEESCSSTTCCEEE
T ss_pred             EEEEeccCCCCHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEEecCCCceEEE
Confidence            788999976 666665421    11247888999999999999999 99999999999     999999643  356999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..........++|+.|+||
T Consensus       173 ~Dfg~~~~~~~~~~~~~~~t~~y~aP  198 (336)
T 3fhr_A          173 TDFGFAKETTQNALQTPCYTPYYVAP  198 (336)
T ss_dssp             CCCTTCEEC-----------------
T ss_pred             eccccceeccccccccCCCCcCccCh
Confidence            99999985444445567889999998

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.05  E-value=2.4e-11  Score=125.59  Aligned_cols=161  Identities=14%  Similarity=0.103  Sum_probs=104.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++..-......+|+|.+...........-.+|  ++..+ +||||++..+.|           ...    
T Consensus        83 g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~-----------~~~----  147 (382)
T 3tt0_A           83 GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC-----------TQD----  147 (382)
T ss_dssp             EEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----
T ss_pred             eEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeee-----------ccC----
Confidence            455555543333211122235788877543211111111334  56666 899999776655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHh----------hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQL----------YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~i----------y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                      -.++.++|++.. ++..++.-...          .......+...+..++.|++.+|.+ |..+|+|+|||     |+||
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----p~NI  222 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLA-----ARNV  222 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGE
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----cceE
Confidence            137899999975 77777653221          0011247888999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      ++.. .+.+|++|||+++....    .......+|..|+||
T Consensus       223 ll~~-~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  262 (382)
T 3tt0_A          223 LVTE-DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  262 (382)
T ss_dssp             EECT-TCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCH
T ss_pred             EEcC-CCcEEEcccCcccccccccccccccCCCCCcceeCH
Confidence            9975 48899999999874321    223455677889987

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.04  E-value=1.2e-11  Score=124.54  Aligned_cols=137  Identities=14%  Similarity=0.037  Sum_probs=97.5

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      ..+|+|.+.....  ......+|  ++..++||||++..+.|.           ........++.++++|.. ++..+++
T Consensus        48 ~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~-----------~~~~~~~~~~lv~e~~~~g~L~~~l~  114 (322)
T 3soc_A           48 EYVAVKIFPIQDK--QSWQNEYEVYSLPGMKHENILQFIGAEK-----------RGTSVDVDLWLITAFHEKGSLSDFLK  114 (322)
T ss_dssp             EEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEE-----------EECSSSEEEEEEEECCTTCBHHHHHH
T ss_pred             CEEEEEEeecCch--HHHHHHHHHHHHhcCCCCCchhhcceec-----------cCCCCCceEEEEEecCCCCCHHHHHH
Confidence            3788888743210  00011234  477789999998766551           111112336889999975 7767663


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC----------CCChHHHHhhccccccccccCCCCeEEEecCCCCCCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS----------AITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS  495 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~----------~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~  495 (512)
                      -       ...+...+..++.|++.++.+ |..          +|+|+|||     |+||++.. .+.+|++|||+++..
T Consensus       115 ~-------~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlk-----p~Nill~~-~~~~kL~DFg~a~~~  181 (322)
T 3soc_A          115 A-------NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIK-----SKNVLLKN-NLTACIADFGLALKF  181 (322)
T ss_dssp             H-------CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCS-----GGGEEECT-TCCEEECCCTTCEEE
T ss_pred             h-------cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCC-----hHhEEECC-CCeEEEccCCccccc
Confidence            2       237788899999999999999 999          99999999     99999975 489999999999632


Q ss_pred             ----CCCCccCeeeeeeeccC
Q psy17422        496 ----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       496 ----~~~~~t~yv~tr~YraP  512 (512)
                          ........++|..|+||
T Consensus       182 ~~~~~~~~~~~~~gt~~y~aP  202 (322)
T 3soc_A          182 EAGKSAGDTHGQVGTRRYMAP  202 (322)
T ss_dssp             CTTSCCCCCTTCCCCGGGCCH
T ss_pred             ccccCccccccCccCccccCH
Confidence                12224457899999998

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.04  E-value=1.5e-11  Score=123.77  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=96.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+.............++   +++.++||||++..+.|.           ..+   
T Consensus        36 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~-----------~~~---   94 (327)
T 3aln_A           36 GSVNKMVHKPSGQ-------IMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALF-----------REG---   94 (327)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE-----------CSS---
T ss_pred             EEEEEEEEcCCCC-------EEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEE-----------eCC---
Confidence            5677777777776       8899987643211111111222   567789999997766551           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+++++..++..++..... ..+...+...+..++.|++.++.+ |.. +|+|+|||     |+||++.. .+.+|
T Consensus        95 -~~~lv~e~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlk-----p~NIll~~-~~~~k  166 (327)
T 3aln_A           95 -DCWICMELMSTSFDKFYKYVYS-VLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIK-----PSNILLDR-SGNIK  166 (327)
T ss_dssp             -EEEEEECCCSEEHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCC-----GGGEEEET-TTEEE
T ss_pred             -ceEEEEeecCCChHHHHHHHHh-hhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCC-----HHHEEEcC-CCCEE
Confidence             3778999998877666643211 113457888899999999999999 998 99999999     99999975 48999


Q ss_pred             EecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++... ....+...+|+.|+||
T Consensus       167 l~Dfg~~~~~~~~~~~~~~~gt~~y~aP  194 (327)
T 3aln_A          167 LCDFGISGQLVDSIAKTRDAGCRPYMAP  194 (327)
T ss_dssp             ECCCSSSCC-------------------
T ss_pred             EccCCCceecccccccccCCCCccccCc
Confidence            99999997432 2233455899999998

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.04  E-value=2.7e-11  Score=124.53  Aligned_cols=148  Identities=16%  Similarity=0.205  Sum_probs=107.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC---C---chH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT---V---PSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~---i---~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~  400 (512)
                      +.|+++.++.+|.       .+|+|.+........   .   ... .+|  ++..+ +||||+...+.|           
T Consensus       108 g~Vy~a~~~~~g~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~-----------  169 (365)
T 2y7j_A          108 SVVRRCVHRATGH-------EFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY-----------  169 (365)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE-----------
T ss_pred             EEEEEEEECCCCc-------EEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE-----------
Confidence            6788888888887       889997654321110   0   011 122  46665 799999766544           


Q ss_pred             hcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc
Q psy17422        401 DNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN  478 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~  478 (512)
                      ...    -.++.++++|.. ++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.
T Consensus       170 ~~~----~~~~lv~e~~~g~~L~~~l~------~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlk-----p~NIl~~  234 (365)
T 2y7j_A          170 ESS----SFMFLVFDLMRKGELFDYLT------EKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLK-----PENILLD  234 (365)
T ss_dssp             EBS----SEEEEEECCCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEC
T ss_pred             eeC----CEEEEEEEeCCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----HHHEEEC
Confidence            111    137889999985 6555553      33457888999999999999999 99999999999     9999997


Q ss_pred             CCCCeEEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        479 ESKLVLKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~~~~~~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      . .+.+|++|||++.. .+.......++|..|+||
T Consensus       235 ~-~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aP  268 (365)
T 2y7j_A          235 D-NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAP  268 (365)
T ss_dssp             T-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCH
T ss_pred             C-CCCEEEEecCcccccCCCcccccCCCCCCccCh
Confidence            5 48899999999873 333445678899999998

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.04  E-value=3.8e-12  Score=131.23  Aligned_cols=167  Identities=11%  Similarity=0.054  Sum_probs=103.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-CCCchH-HHH-----HHhhCCCCCCCcCCchhhhhHHhhh------
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-TTVPSS-VAS-----ILNDNACVNLTSKSEPFWILAKAVK------  397 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-~~i~~~-~~e-----ll~~~~~~ni~~~~~~fw~l~~alk------  397 (512)
                      +.|+++.+..+|.       .+|+|.+...... ...... .+|     +|..++||||++....|+.......      
T Consensus        87 g~V~~a~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~  159 (377)
T 3byv_A           87 YAYLEATDQETGE-------SFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKK  159 (377)
T ss_dssp             EEEEEEEC-CCCC-------EEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCS
T ss_pred             EEEEEEEECCCCc-------EEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCcc
Confidence            5677777777776       8999998743221 111122 244     2455579998754322210000000      


Q ss_pred             ---hhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhh-ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccc
Q psy17422        398 ---DFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRD-QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNA  472 (512)
Q Consensus       398 ---~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~-ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~  472 (512)
                         .|.+.........+.+||+|..++..++.-...+.. ....+...+..++.|++.+|.| |..+|+|||||     |
T Consensus       160 ~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDik-----p  234 (377)
T 3byv_A          160 MIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLR-----P  234 (377)
T ss_dssp             EEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----G
T ss_pred             ccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----H
Confidence               000100000113678899998888888765433221 1112236777899999999999 99999999999     9


Q ss_pred             ccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        473 SFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       473 ~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +||++... +.+|++|||+++.... ..+..++ +.|+||
T Consensus       235 ~NIll~~~-~~~kL~DFG~a~~~~~-~~~~~~g-~~y~aP  271 (377)
T 3byv_A          235 VDIVLDQR-GGVFLTGFEHLVRDGA-RVVSSVS-RGFEPP  271 (377)
T ss_dssp             GGEEECTT-CCEEECCGGGCEETTC-EEECCCC-TTCCCH
T ss_pred             HHEEEcCC-CCEEEEechhheecCC-cccCCCC-cCccCh
Confidence            99999754 8999999999984322 3456677 999998

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.04  E-value=3e-11  Score=121.16  Aligned_cols=146  Identities=12%  Similarity=0.089  Sum_probs=89.7

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc-ceeEEeccccC-ChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL-PLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l-Pl~~~lpdm~~-d~~~yv  425 (512)
                      .+|+|.+........-... .+|  +++.++||||++..+.+.          .....+.. .++.+++++.. ++..++
T Consensus        53 ~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~~~~~~~~~~v~e~~~~~~L~~~l  122 (323)
T 3qup_A           53 KVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSL----------RSRAKGRLPIPMVILPFMKHGDLHAFL  122 (323)
T ss_dssp             EEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEE----------CC-------CEEEEEECCTTCBHHHHH
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceee----------ccccccCCCccEEEEEeccCCcHHHHH
Confidence            4688776543221111122 344  688899999998776552          11111111 23788999975 777777


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCc
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEI  500 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~  500 (512)
                      .-...-......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....    ...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dik-----p~NIli~~-~~~~kl~Dfg~a~~~~~~~~~~~~  196 (323)
T 3qup_A          123 LASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLA-----ARNCMLAE-DMTVCVADFGLSRKIYSGDYYRQG  196 (323)
T ss_dssp             HHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECT-TSCEEECCCCC-------------
T ss_pred             HhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCC-----cceEEEcC-CCCEEEeecccccccccccccccc
Confidence            544433333357888999999999999999 99999999999     99999975 48999999999873221    112


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      ....+|..|+||
T Consensus       197 ~~~~~~~~y~aP  208 (323)
T 3qup_A          197 CASKLPVKWLAL  208 (323)
T ss_dssp             ----CCGGGCCH
T ss_pred             ccccCcccccCc
Confidence            234456678887

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.04  E-value=1.4e-11  Score=122.71  Aligned_cols=161  Identities=20%  Similarity=0.199  Sum_probs=105.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+...- ......-.+|  +++.++||||++..+.+..-...+...... ....-
T Consensus        25 g~V~~~~~~~~~~-------~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~-~~~~~   95 (320)
T 2i6l_A           25 GLVFSAVDNDCDK-------RVAIKKIVLTD-PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS-LTELN   95 (320)
T ss_dssp             -CEEEEEETTTTE-------EEEEEEEECCS-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-----CCSCS
T ss_pred             eEEEEEEECCCCe-------EEEEEEEecCC-hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc-ccccC
Confidence            5677888777777       88988764310 0001111234  688899999997655441100000000000 01112


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .++.+++++..++.++++       +...+...+..++.|++.++.+ |..+|+|+|||     |+||++....+.+|++
T Consensus        96 ~~~lv~e~~~~~L~~~~~-------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nil~~~~~~~~kl~  163 (320)
T 2i6l_A           96 SVYIVQEYMETDLANVLE-------QGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLK-----PANLFINTEDLVLKIG  163 (320)
T ss_dssp             EEEEEEECCSEEHHHHHT-------TCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS-----GGGEEEETTTTEEEEC
T ss_pred             ceeEEeeccCCCHHHHhh-------cCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEEcCCCCeEEEc
Confidence            478899999877666553       2347788899999999999999 99999999999     9999997555789999


Q ss_pred             cCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        488 DFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      |||+++...     ........+|++|+||
T Consensus       164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (320)
T 2i6l_A          164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSP  193 (320)
T ss_dssp             CCTTCBCC--------CCCGGGSCCTTCCH
T ss_pred             cCccccccCCCcccccccccccccccccCc
Confidence            999987421     1223455778999987

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.04  E-value=1.4e-11  Score=124.40  Aligned_cols=152  Identities=13%  Similarity=0.077  Sum_probs=101.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.    .+..+|+|.+...........-.+|  ++..++||||+...+.|           ...+    
T Consensus        63 g~V~~~~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~----  123 (325)
T 3kul_A           63 GEVCYGRLRVPGQ----RDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV-----------TRGR----  123 (325)
T ss_dssp             EEEEEEEECCTTS----CCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------CGGG----
T ss_pred             cEEEEEEEecCCC----CCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EeCC----
Confidence            5566666665554    1224888887643211111111234  68889999999776654           1111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.++++|.. ++..+++-     .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus       124 ~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll~~-~~~~kl  192 (325)
T 3kul_A          124 LAMIVTEYMENGSLDTFLRT-----HDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLA-----ARNVLVDS-NLVCKV  192 (325)
T ss_dssp             CCEEEEECCTTCBHHHHHHT-----TTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCEEE
T ss_pred             ccEEEeeCCCCCcHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----cceEEECC-CCCEEE
Confidence            26789999975 76666532     22357888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCCCC-----CccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHEN-----EITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~-----~~t~yv~tr~YraP  512 (512)
                      +|||+++.....     ......+|..|+||
T Consensus       193 ~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aP  223 (325)
T 3kul_A          193 SDFGLSRVLEDDPDAAYTTTGGKIPIRWTAP  223 (325)
T ss_dssp             CCCSSCEECC----CCEECC---CCGGGSCH
T ss_pred             CCCCcccccccCccceeeccCCCCcccccCH
Confidence            999998732211     12233456679887

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.04  E-value=1.4e-11  Score=126.07  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=96.8

Q ss_pred             hHhHHHHhhhhcC------CCCCchHHHHHHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-Ch
Q psy17422        350 FEEAMKAVNFALI------PTTVPSSVASILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DT  421 (512)
Q Consensus       350 ~~eAik~v~~~~~------~~~i~~~~~ell~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~  421 (512)
                      ..+|+|.+.....      ...+..+ .+++..+ +|+||+.....|           ..++    .++.++++|.. ++
T Consensus        83 ~~vavK~~~~~~~~~~~~~~~~~~~E-~~~l~~l~~h~~iv~~~~~~-----------~~~~----~~~lv~e~~~~~~L  146 (355)
T 1vzo_A           83 KLYAMKVLKKATIVQKAKTTEHTRTE-RQVLEHIRQSPFLVTLHYAF-----------QTET----KLHLILDYINGGEL  146 (355)
T ss_dssp             CEEEEEEESEEEEEEEESSGGGCCCH-HHHHHHHHTCTTBCCEEEEE-----------EETT----EEEEEECCCCSCBH
T ss_pred             eEEEEEEEeHHHhhhhhhHHHHHHHH-HHHHHHccCCCceeEEEEEE-----------eeCc----eEEEEeecCCCCCH
Confidence            3889998764321      1112222 2356666 699999766554           1111    27889999974 66


Q ss_pred             HHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC---CC
Q psy17422        422 TRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS---HE  497 (512)
Q Consensus       422 ~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~---~~  497 (512)
                      ..++.      .+...+...+..++.|++.+|.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..   ..
T Consensus       147 ~~~l~------~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~kl~DfG~a~~~~~~~~  214 (355)
T 1vzo_A          147 FTHLS------QRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK-----LENILLDS-NGHVVLTDFGLSKEFVADET  214 (355)
T ss_dssp             HHHHH------HHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCEEESCSSEEEECCGGGG
T ss_pred             HHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEECC-CCcEEEeeCCCCeecccCCC
Confidence            55553      23357888999999999999999 99999999999     99999975 489999999998732   12


Q ss_pred             CCccCeeeeeeeccC
Q psy17422        498 NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 ~~~t~yv~tr~YraP  512 (512)
                      .....+++|..|+||
T Consensus       215 ~~~~~~~gt~~y~aP  229 (355)
T 1vzo_A          215 ERAYDFCGTIEYMAP  229 (355)
T ss_dssp             GGGCGGGSCCTTCCH
T ss_pred             CcccCcccCcCccCh
Confidence            234457899999998

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.04  E-value=2.1e-11  Score=120.89  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      ..+|+|.+...........-.+|  ++..++|+||++..+.|.          ..   +.-.++.+++++.. ++..++.
T Consensus        51 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----------~~---~~~~~~lv~e~~~~~~L~~~l~  117 (302)
T 4e5w_A           51 EQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICT----------ED---GGNGIKLIMEFLPSGSLKEYLP  117 (302)
T ss_dssp             EEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEE----------C------CCEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEe----------cC---CCceEEEEEEeCCCCcHHHHHH
Confidence            38899987654322222222344  688899999997766552          11   11237789999975 7666663


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC-----CCc
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE-----NEI  500 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~-----~~~  500 (512)
                      -     .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....     ...
T Consensus       118 ~-----~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~  186 (302)
T 4e5w_A          118 K-----NKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLA-----ARNVLVES-EHQVKIGDFGLTKAIETDKEYYTVK  186 (302)
T ss_dssp             H-----HTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEEE-TTEEEECCCTTCEECCTTCCEEECC
T ss_pred             h-----ccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCc-----hheEEEcC-CCCEEECcccccccccCCCcceecc
Confidence            2     22347888999999999999999 99999999999     99999975 48999999999873221     123


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      ....+|..|+||
T Consensus       187 ~~~~~~~~y~aP  198 (302)
T 4e5w_A          187 DDRDSPVFWYAP  198 (302)
T ss_dssp             CCTTCCGGGCCH
T ss_pred             CCCCCCccccCC
Confidence            355677788887

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.03  E-value=2.9e-11  Score=118.65  Aligned_cols=149  Identities=20%  Similarity=0.207  Sum_probs=105.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC----CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT----VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~----i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.++.+|.       .+|+|.+........    .... .+|  +++.++||||++..+.|.           ..
T Consensus        19 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----------~~   80 (283)
T 3bhy_A           19 AIVRKCRQKGTGK-------EYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE-----------NK   80 (283)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------CS
T ss_pred             eEEEEEEEcCCCC-------eeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----------CC
Confidence            6788888887887       889988765432111    1122 233  688899999997766551           11


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                          -.++.+++++. .++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++....
T Consensus        81 ----~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~Nil~~~~~  145 (283)
T 3bhy_A           81 ----TDVVLILELVSGGELFDFLA------EKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLK-----PENIMLLDKN  145 (283)
T ss_dssp             ----SEEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEESCSS
T ss_pred             ----CeEEEEEeecCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC-----hHHEEEecCC
Confidence                13788999996 56666653      23457888999999999999999 99999999999     9999997542


Q ss_pred             ---CeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 ---LVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ---~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                         ..+|++|||+++.. ........++|..|+||
T Consensus       146 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aP  180 (283)
T 3bhy_A          146 VPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAP  180 (283)
T ss_dssp             SSSCCEEECCCTTCEECC--------CCCGGGCCH
T ss_pred             CCCCceEEEecccceeccCCCcccccCCCcCccCc
Confidence               27999999998733 23344566789999988

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.03  E-value=3.7e-12  Score=130.95  Aligned_cols=167  Identities=11%  Similarity=0.026  Sum_probs=92.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCch-HH-HH-----HHhhCCCCCCCcCCchhhhh---H--Hhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPS-SV-AS-----ILNDNACVNLTSKSEPFWIL---A--KAVKD  398 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~-~~-~e-----ll~~~~~~ni~~~~~~fw~l---~--~alk~  398 (512)
                      +.|+++.+..+|.       .+|+|.+........... .+ +|     +|+. +||||+.....|...   .  .....
T Consensus        76 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~~~~  147 (371)
T 3q60_A           76 SVVFLVRDVERLE-------DFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQSQPP  147 (371)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEETTSCS
T ss_pred             EEEEEEEECCCCc-------eeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCCCCC
Confidence            5667777766666       889998765322111111 12 22     4555 799988643333100   0  00000


Q ss_pred             hhhcC----CCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHH-HHHHHHHHHHhCC-CCCCCChHHHHhhcccc
Q psy17422        399 FVDNE----GNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVI-YRRAQQLLHQLGQ-PSSAITEAQVKLFCRNA  472 (512)
Q Consensus       399 F~~~~----~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v-~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~  472 (512)
                      |..-.    ......++.+||+|..++..++.-..............+ ..++.|++.++.| |..+|+|||||     |
T Consensus       148 ~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDik-----p  222 (371)
T 3q60_A          148 FAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFT-----P  222 (371)
T ss_dssp             SSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTCS-----G
T ss_pred             eeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcCC-----H
Confidence            00000    000123789999999888888865422111100011123 3445999999999 99999999999     9


Q ss_pred             ccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        473 SFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       473 ~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +||++.. .+.+|++|||+++..... .....+|+.|+||
T Consensus       223 ~NIll~~-~~~~kL~DFG~a~~~~~~-~~~~~~t~~y~aP  260 (371)
T 3q60_A          223 DNLFIMP-DGRLMLGDVSALWKVGTR-GPASSVPVTYAPR  260 (371)
T ss_dssp             GGEEECT-TSCEEECCGGGEEETTCE-EEGGGSCGGGCCH
T ss_pred             HHEEECC-CCCEEEEecceeeecCCC-ccCccCCcCCcCh
Confidence            9999975 489999999998844322 1245667999998

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.03  E-value=4.2e-11  Score=118.16  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=108.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.+.           ..    
T Consensus        36 g~V~~~~~~~~~~-------~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~----   93 (287)
T 2wei_A           36 GEVLKCKDRITQQ-------EYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----------DS----   93 (287)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------CS----
T ss_pred             EEEEEEEEcCCCc-------EEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----------CC----
Confidence            6788888887777       8899988655433332233 344  688899999997665541           11    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~  483 (512)
                      -.++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++...  .+.
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~-----p~NIlv~~~~~~~~  162 (287)
T 2wei_A           94 SSFYIVGELYTGGELFDEII------KRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLK-----PENILLESKEKDCD  162 (287)
T ss_dssp             SEEEEEECCCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEESCSSTTCC
T ss_pred             CeEEEEEEccCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----hhhEEEecCCCccc
Confidence            137788999864 5544442      23357888999999999999999 99999999999     999999653  247


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. .........+|..|+||
T Consensus       163 ~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aP  192 (287)
T 2wei_A          163 IKIIDFGLSTCFQQNTKMKDRIGTAYYIAP  192 (287)
T ss_dssp             EEECSTTGGGTBCCCSSCSCHHHHHTTCCH
T ss_pred             EEEeccCcceeecCCCccccccCcccccCh
Confidence            999999998743 23334556788889887

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.03  E-value=1.2e-11  Score=125.92  Aligned_cols=70  Identities=21%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             CChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC----CCCccCeeeeeeecc
Q psy17422        437 RDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH----ENEITPYLVSRFYRA  511 (512)
Q Consensus       437 ~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~----~~~~t~yv~tr~Yra  511 (512)
                      .+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++...    ........+|..|+|
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dik-----p~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~a  263 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASRKCIHRDLA-----ARNILLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  263 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----hhhEEEcC-CCcEEEEeccceeeecccccchhccccCCCceeEC
Confidence            6788899999999999999 99999999999     99999975 4889999999987321    112345678889999


Q ss_pred             C
Q psy17422        512 P  512 (512)
Q Consensus       512 P  512 (512)
                      |
T Consensus       264 P  264 (359)
T 3vhe_A          264 P  264 (359)
T ss_dssp             H
T ss_pred             h
Confidence            8

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.03  E-value=3.3e-11  Score=120.31  Aligned_cols=146  Identities=11%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+............ .+|  ++..++||||++..+.+.          .....+....+.+++++. .++..++.
T Consensus        64 ~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----------~~~~~~~~~~~~v~e~~~~~~L~~~l~  133 (313)
T 3brb_A           64 KVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI----------EMSSQGIPKPMVILPFMKYGDLHTYLL  133 (313)
T ss_dssp             EEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE----------C-------CEEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe----------eccccCCcccEEEEecccCCCHHHHHH
Confidence            6788877543211111111 233  688899999998766552          111122223578899997 47777775


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----CCcc
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----NEIT  501 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t  501 (512)
                      ....-......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....    ....
T Consensus       134 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dik-----p~NIli~~-~~~~kl~Dfg~~~~~~~~~~~~~~~  207 (313)
T 3brb_A          134 YSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLA-----ARNCMLRD-DMTVCVADFGLSKKIYSGDYYRQGR  207 (313)
T ss_dssp             HTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCS-----GGGEEECT-TSCEEECSCSCC-------------
T ss_pred             HhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----cceEEEcC-CCcEEEeecCcceecccccccCccc
Confidence            44433344568889999999999999999 99999999999     99999975 47899999999873221    1123


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ...++..|+||
T Consensus       208 ~~~~~~~y~aP  218 (313)
T 3brb_A          208 IAKMPVKWIAI  218 (313)
T ss_dssp             ---CCGGGSCH
T ss_pred             ccCCCccccCc
Confidence            34566778887

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.02  E-value=2.4e-11  Score=118.67  Aligned_cols=147  Identities=18%  Similarity=0.077  Sum_probs=105.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+...... ..... .+|  +++.++||||++..+.+           ...+   
T Consensus        21 g~V~~~~~~~~~~-------~vavK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~~---   78 (276)
T 2yex_A           21 GEVQLAVNRVTEE-------AVAVKIVDMKRAV-DCPENIKKEICINKMLNHENVVKFYGHR-----------REGN---   78 (276)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEEGGGCT-THHHHHHHHHHHHHTCCCTTBCCEEEEE-----------EETT---
T ss_pred             cEEEEEEECCCCc-------EEEEEEeeeccch-hhhHHHHHHHHHHHhcCCCCceeeeeEE-----------EcCC---
Confidence            5677777777777       8888887543221 11222 233  67888999999765544           1111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+++++.. ++..+      .......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        79 -~~~lv~e~~~~~~L~~~------l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~k  145 (276)
T 2yex_A           79 -IQYLFLEYCSGGELFDR------IEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK-----PENLLLDE-RDNLK  145 (276)
T ss_dssp             -EEEEEEECCTTEEGGGG------SBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCEE
T ss_pred             -EEEEEEEecCCCcHHHH------HhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----hHHEEEcc-CCCEE
Confidence             26788999875 44333      3333457888999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..    ........++|..|+||
T Consensus       146 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  176 (276)
T 2yex_A          146 ISDFGLATVFRYNNRERLLNKMCGTLPYVAP  176 (276)
T ss_dssp             ECCCTTCEECEETTEECCBCCCCSCGGGCCG
T ss_pred             EeeCCCccccCCCcchhcccCCccccCccCh
Confidence            9999998632    12234567889999998

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.02  E-value=2.2e-11  Score=123.75  Aligned_cols=146  Identities=16%  Similarity=0.080  Sum_probs=97.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCC--CCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNAC--VNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~--~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.++ ++.       .+|+|.+............ .+|  ++..++|  +||+...+.+           ...+ 
T Consensus        23 g~Vy~~~~~-~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~-----------~~~~-   82 (343)
T 3dbq_A           23 SKVFQVLNE-KKQ-------IYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE-----------ITDQ-   82 (343)
T ss_dssp             EEEEEEECT-TSC-------EEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE-----------ECSS-
T ss_pred             eEEEEEEeC-CCC-------EEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeE-----------eeCC-
Confidence            556666553 344       7888887543211111111 233  5666665  8998766544           1111 


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         .++.+|+.+..++..++.      .+...+...+..++.|++.++.+ |..+|+|||||     |+||++.  .+.+
T Consensus        83 ---~~~lv~e~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDik-----p~NIll~--~~~~  146 (343)
T 3dbq_A           83 ---YIYMVMECGNIDLNSWLK------KKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK-----PANFLIV--DGML  146 (343)
T ss_dssp             ---EEEEEECCCSEEHHHHHH------HSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEEE--TTEE
T ss_pred             ---EEEEEEeCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----cceEEEE--CCcE
Confidence               277888866666666553      34457888999999999999999 99999999999     9999995  4789


Q ss_pred             EEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....    ......++|++|+||
T Consensus       147 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aP  178 (343)
T 3dbq_A          147 KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP  178 (343)
T ss_dssp             EECCCSSSCCC------------CCCCSSCCH
T ss_pred             EEeecccccccCcccccccCCCCcCCcCcCCH
Confidence            9999999984321    123467899999998

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.02  E-value=3.1e-11  Score=121.83  Aligned_cols=151  Identities=13%  Similarity=0.073  Sum_probs=94.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|..+   ...+|+|.+....... .... .+|  ++..++||||+...+.+.            ++.  
T Consensus        29 g~Vy~~~~~~~~~~~---~~~vaiK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~------------~~~--   90 (327)
T 3poz_A           29 GTVYKGLWIPEGEKV---KIPVAIKELREATSPK-ANKEILDEAYVMASVDNPHVCRLLGICL------------TST--   90 (327)
T ss_dssp             EEEEEEEECC----C---CEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEE------------SSS--
T ss_pred             eEEEEEEEcCCCceE---EEEEEEeecccccCHH-HHHHHHHHHHHHHhCCCCCEeEEEEEEe------------cCC--
Confidence            566677666666511   0123666554322211 1122 344  688899999997766551            111  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        ...++++|. .++..++.-     .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        91 --~~~v~e~~~~g~L~~~l~~-----~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dik-----p~NIll~~-~~~~k  157 (327)
T 3poz_A           91 --VQLITQLMPFGCLLDYVRE-----HKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA-----ARNVLVKT-PQHVK  157 (327)
T ss_dssp             --EEEEEECCTTCBHHHHHHH-----STTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEEEE-TTEEE
T ss_pred             --eEEEEEecCCCcHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCC-----hheEEECC-CCCEE
Confidence              557788877 455555432     23457888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC--C--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--H--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..  .  ........+|..|+||
T Consensus       158 l~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  188 (327)
T 3poz_A          158 ITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL  188 (327)
T ss_dssp             ECCTTHHHHHTTTCC-------CCCGGGSCH
T ss_pred             EccCcceeEccCCcccccccCCCccccccCh
Confidence            9999998621  1  1122344557789887

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.02  E-value=3.5e-11  Score=120.42  Aligned_cols=148  Identities=16%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC-CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+........ .... .+|  ++..++||||+...+.|.           ..+  
T Consensus        48 g~Vy~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----------~~~--  107 (309)
T 2h34_A           48 GDVYEAEDTVRER-------IVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGE-----------IDG--  107 (309)
T ss_dssp             SEEEEEEETTTTE-------EEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----------ETT--
T ss_pred             eeEEEEEEcCCCe-------EEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEe-----------eCC--
Confidence            5677777776666       789988765432111 1112 233  678889999997666541           111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus       108 --~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk-----p~NIl~~~-~~~~  173 (309)
T 2h34_A          108 --QLYVDMRLINGVDLAAMLR------RQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVK-----PENILVSA-DDFA  173 (309)
T ss_dssp             --EEEEEEECCCCEEHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSCE
T ss_pred             --eEEEEEEecCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCC-----hHHEEEcC-CCCE
Confidence              27788999975 6655554      33457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....   ......++|..|+||
T Consensus       174 kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  204 (309)
T 2h34_A          174 YLVDFGIASATTDEKLTQLGNTVGTLYYMAP  204 (309)
T ss_dssp             EECSCCC----------------CCGGGCCG
T ss_pred             EEecCccCccccccccccccccCCCcCccCH
Confidence            9999999874321   234567889999998

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.01  E-value=3.9e-11  Score=118.50  Aligned_cols=149  Identities=10%  Similarity=0.034  Sum_probs=104.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      +.|+++.+..+|.       .+|+|.+........+..+++ ++..+ +|+|+......+           ...    ..
T Consensus        24 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~e~~-~~~~l~~~~~i~~~~~~~-----------~~~----~~   80 (298)
T 1csn_A           24 GVIFEGTNLLNNQ-------QVAIKFEPRRSDAPQLRDEYR-TYKLLAGCTGIPNVYYFG-----------QEG----LH   80 (298)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEECCTTSCCHHHHHH-HHHHTTTCTTCCCEEEEE-----------EET----TE
T ss_pred             EEEEEEEECCCCc-------EEEEEEeccCCccHHHHHHHH-HHHHHhcCCCCCeEEeec-----------CCC----ce
Confidence            5677777776776       889997754322222322232 45555 688887544332           111    12


Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC----CCeE
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES----KLVL  484 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~----~~~~  484 (512)
                      .+.+++++..++..++...     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++...    .+.+
T Consensus        81 ~~lv~e~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----p~NIl~~~~~~~~~~~~  150 (298)
T 1csn_A           81 NVLVIDLLGPSLEDLLDLC-----GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIK-----PDNFLIGRPNSKNANMI  150 (298)
T ss_dssp             EEEEEECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----GGGEEECCSSSTTTTCE
T ss_pred             eEEEEEecCCCHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHEEeccCCCCCCCeE
Confidence            6789999977877776532     2247888999999999999999 99999999999     999999643    1249


Q ss_pred             EEecCCCCCCCCC---------CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE---------NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~---------~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....         ......++|..|+||
T Consensus       151 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  187 (298)
T 1csn_A          151 YVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSI  187 (298)
T ss_dssp             EECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCH
T ss_pred             EEEECccccccccccccccccccCccCCCCCcccCCc
Confidence            9999999872211         124567899999998

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.01  E-value=4.2e-11  Score=119.99  Aligned_cols=155  Identities=23%  Similarity=0.260  Sum_probs=106.9

Q ss_pred             cchhhhccc-cCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HH---hhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKD-ENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--IL---NDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~-~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll---~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.+. ..|.       .+|+|.+............ .+|  ++   ..++||||++..+.|+.          ..
T Consensus        25 g~V~~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~----------~~   87 (326)
T 1blx_A           25 GKVFKARDLKNGGR-------FVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV----------SR   87 (326)
T ss_dssp             EEEEEEEETTTTTE-------EEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEE----------EE
T ss_pred             EEEEEEEecCCCCE-------EEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeee----------cc
Confidence            456666653 4444       7899987654433322222 333  33   44589999977665520          00


Q ss_pred             CCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        404 GNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                      ......++.+++++..++..++.-.    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+
T Consensus        88 ~~~~~~~~lv~e~~~~~L~~~l~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlk-----p~Nili~~-~~  157 (326)
T 1blx_A           88 TDRETKLTLVFEHVDQDLTTYLDKV----PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK-----PQNILVTS-SG  157 (326)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHS----CTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TC
T ss_pred             cCCCceEEEEEecCCCCHHHHHHhc----ccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC-----HHHeEEcC-CC
Confidence            0112237788999988777766421    12237788999999999999999 99999999999     99999975 48


Q ss_pred             eEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++... .......++|..|+||
T Consensus       158 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aP  188 (326)
T 1blx_A          158 QIKLADFGLARIYSFQMALTSVVVTLWYRAP  188 (326)
T ss_dssp             CEEECSCCSCCCCCGGGGGCCCCCCCTTCCH
T ss_pred             CEEEecCcccccccCCCCccccccccceeCH
Confidence            89999999987432 3345567889999998

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.01  E-value=1.1e-11  Score=130.44  Aligned_cols=146  Identities=21%  Similarity=0.287  Sum_probs=102.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC------CCCCCCcCCchhhhhHHhhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN------ACVNLTSKSEPFWILAKAVKDFVD  401 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~------~~~ni~~~~~~fw~l~~alk~F~~  401 (512)
                      +.|+++.+..+|.       .+|+|.+....   ..... .+|  +++.+      +|+||+...+.|.           
T Consensus       111 g~V~~a~~~~~~~-------~vAvK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~-----------  169 (429)
T 3kvw_A          111 GQVVKAYDHKVHQ-------HVALKMVRNEK---RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFT-----------  169 (429)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSCH---HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEE-----------
T ss_pred             EEEEEEEECCCCc-------EEEEEEECCcc---chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecc-----------
Confidence            5677777766666       88999875321   11111 122  33332      5678886655541           


Q ss_pred             cCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC
Q psy17422        402 NEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       402 ~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      ..    -.++.++++|..++..++....    ....+...+..++.|++.+|.| |..+|+|||||     |+||++...
T Consensus       170 ~~----~~~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK-----p~NILl~~~  236 (429)
T 3kvw_A          170 FR----NHICMTFELLSMNLYELIKKNK----FQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLK-----PENILLKQQ  236 (429)
T ss_dssp             ET----TEEEEEECCCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCS-----GGGEEESST
T ss_pred             cC----CeEEEEEeccCCCHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeEEccC
Confidence            11    1278899999887776664321    1237888999999999999999 99999999999     999999754


Q ss_pred             CCe--EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        481 KLV--LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~--~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                       +.  +|++|||+++.... ....+++|++|+||
T Consensus       237 -~~~~vkL~DFG~a~~~~~-~~~~~~gt~~y~aP  268 (429)
T 3kvw_A          237 -GRSGIKVIDFGSSCYEHQ-RVYTYIQSRFYRAP  268 (429)
T ss_dssp             -TSCCEEECCCTTCEETTC-CCCSSCSCGGGCCH
T ss_pred             -CCcceEEeecccceecCC-cccccCCCCCccCh
Confidence             44  99999999974433 24467999999998

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.01  E-value=6.3e-11  Score=119.77  Aligned_cols=151  Identities=13%  Similarity=0.069  Sum_probs=96.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|..++   ..+|+|.+...... ..... .+|  ++..++||||+...+.|.           . +.  
T Consensus        29 g~Vy~~~~~~~~~~~~---~kv~iK~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------~-~~--   90 (327)
T 3lzb_A           29 GTVYKGLWIPEGEKVK---IPVAIKELREATSP-KANKEILDEAYVMASVDNPHVCRLLGICL-----------T-ST--   90 (327)
T ss_dssp             EEEEEEEECCTTCSCC---EEEEEEEECCCSSC-CCHHHHHHHHHHHTTCCBTTBCCCCEEEE-----------S-SS--
T ss_pred             eEEEEEEEcCCCceEE---EEEEEEeeccccCH-HHHHHHHHHHHHHHhCCCCCeeEEEEEEe-----------c-CC--
Confidence            5677777776666110   01244444322221 12222 344  688899999998776652           1 11  


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        ...++++|. .++..++.-     .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        91 --~~~v~~~~~~g~L~~~l~~-----~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----p~NIl~~~-~~~~k  157 (327)
T 3lzb_A           91 --VQLITQLMPFGCLLDYVRE-----HKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA-----ARNVLVKT-PQHVK  157 (327)
T ss_dssp             --EEEEECCCSSCBHHHHHHH-----TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEEEE-TTEEE
T ss_pred             --ceEEEEecCCCcHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCC-----HHHEEEcC-CCCEE
Confidence              567788876 455555432     23347888999999999999999 99999999999     99999965 48999


Q ss_pred             EecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...    ........+|..|+||
T Consensus       158 L~DfG~a~~~~~~~~~~~~~~~~~t~~y~aP  188 (327)
T 3lzb_A          158 ITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL  188 (327)
T ss_dssp             ECCTTC----------------CCCGGGSCH
T ss_pred             EccCcceeEccCccccccccCCCccccccCH
Confidence            99999987321    1122344567788887

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.00  E-value=4e-11  Score=117.47  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=95.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.... ........ .+|  ++..++||||++..+.|           ...   
T Consensus        25 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~---   83 (278)
T 3cok_A           25 AGVYRAESIHTGL-------EVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYF-----------EDS---   83 (278)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEE-----------ECS---
T ss_pred             eEEEEEEEccCCc-------eEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEE-----------ccC---
Confidence            5677777777777       88988875432 11122222 233  67888999999766655           111   


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       -.++.++|++.. ++..++.-     .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        84 -~~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~Nili~~-~~~~  151 (278)
T 3cok_A           84 -NYVYLVLEMCHNGEMNRYLKN-----RVKPFSENEARHFMHQIITGMLYLHSHGILHRDLT-----LSNLLLTR-NMNI  151 (278)
T ss_dssp             -SEEEEEEECCTTEEHHHHHHT-----CSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCC-----GGGEEECT-TCCE
T ss_pred             -CeEEEEEecCCCCcHHHHHhh-----ccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHEEEcC-CCCE
Confidence             127788999974 55555431     12347888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..  +.......++|..|+||
T Consensus       152 kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  181 (278)
T 3cok_A          152 KIADFGLATQLKMPHEKHYTLCGTPNYISP  181 (278)
T ss_dssp             EECCCTTCEECC------------------
T ss_pred             EEEeecceeeccCCCCcceeccCCCCcCCc
Confidence            99999998732  22233456889999998

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.00  E-value=4.3e-11  Score=123.54  Aligned_cols=136  Identities=13%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++||||++..+.+           ...    -+++.++|+|. .++..+++-
T Consensus        75 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-----------~~~----~~~~lv~e~~~~~sL~~~l~~  139 (373)
T 2qol_A           75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-----------TKS----KPVMIVTEYMENGSLDSFLRK  139 (373)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------CSS----SSCEEEEECCTTCBHHHHHHT
T ss_pred             eEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------eeC----CceEEEEeCCCCCcHHHHHHh
Confidence            6888887543211110011234  68889999999776655           111    23789999996 577666642


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---Ccc--
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EIT--  501 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t--  501 (512)
                           .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....   ..+  
T Consensus       140 -----~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~  208 (373)
T 2qol_A          140 -----HDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLA-----ARNILINS-NLVCKVSDFGLGRVLEDDPEAAYTTR  208 (373)
T ss_dssp             -----TTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEEECCC-----------------
T ss_pred             -----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----cceEEEcC-CCCEEECcCccccccccCCccceecc
Confidence                 22347888899999999999999 99999999999     99999975 488999999998743211   111  


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ...+|..|+||
T Consensus       209 ~~~~~~~y~aP  219 (373)
T 2qol_A          209 GGKIPIRWTSP  219 (373)
T ss_dssp             -----CTTSCH
T ss_pred             CCCcCCCccCh
Confidence            22345678887

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=98.99  E-value=6.5e-11  Score=115.72  Aligned_cols=148  Identities=15%  Similarity=0.103  Sum_probs=98.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+.... ........ .+|  +++.++||||+...+.|           ...+  
T Consensus        25 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~~~--   84 (276)
T 2h6d_A           25 GKVKIGEHQLTGH-------KVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVI-----------STPT--   84 (276)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCc-------eEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEE-----------ecCC--
Confidence            5677777777776       88888775432 11122222 233  67888999999766554           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++. .++..++.-      ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        85 --~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~  150 (276)
T 2h6d_A           85 --DFFMVMEYVSGGELFDYICK------HGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLK-----PENVLLDA-HMNA  150 (276)
T ss_dssp             --EEEEEEECCCSCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCC-----GGGEEECT-TSCE
T ss_pred             --eEEEEEeccCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC-----hhhEEECC-CCCE
Confidence              2778999997 466666542      2347788999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++... .......++|..|+||
T Consensus       151 ~l~dfg~~~~~~~~~~~~~~~~~~~y~aP  179 (276)
T 2h6d_A          151 KIADFGLSNMMSDGEFLRTSCGSPNYAAP  179 (276)
T ss_dssp             EECCCCGGGCCCC-------------CCT
T ss_pred             EEeecccccccCCCcceecccCCccccCH
Confidence            999999987432 2334466889999998

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=98.99  E-value=3.2e-11  Score=133.36  Aligned_cols=150  Identities=11%  Similarity=0.050  Sum_probs=101.6

Q ss_pred             hhccccCCCCCCC------cChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        335 RIRKDENGIPLSE------ENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       335 ~~~~~~~~~~~~~------~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      ++..+..|..|..      .+..+|+|.+............ .+|  +|..++||||+++...+           +.  .
T Consensus       376 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----------~~--~  442 (635)
T 4fl3_A          376 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-----------EA--E  442 (635)
T ss_dssp             EEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ES--S
T ss_pred             EeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------ec--C
Confidence            3555566655533      2347899987654333222233 344  78899999999766543           21  1


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.++++|.. ++..++.      .....+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.
T Consensus       443 ---~~~lv~E~~~~g~L~~~l~------~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLk-----p~NILl~~-~~~  507 (635)
T 4fl3_A          443 ---SWMLVMEMAELGPLNKYLQ------QNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLA-----ARNVLLVT-QHY  507 (635)
T ss_dssp             ---SEEEEEECCTTEEHHHHHH------HCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEEE-TTE
T ss_pred             ---CEEEEEEccCCCCHHHHHh------hCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCC-----hHhEEEeC-CCC
Confidence               26789999974 5555553      33457888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCCC--C---CCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH--E---NEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~--~---~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...  .   ...+...+|..|+||
T Consensus       508 ~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~AP  541 (635)
T 4fl3_A          508 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAP  541 (635)
T ss_dssp             EEECCTTHHHHTTC-------------CGGGSCH
T ss_pred             EEEEEcCCccccccCccccccccCCCCceeeeCh
Confidence            9999999987321  1   122334556778887

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=98.99  E-value=5e-11  Score=118.43  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=105.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+...........-.+|  ++..++||||+.....|.           ...    
T Consensus        36 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~----   93 (303)
T 3a7i_A           36 GEVFKGIDNRTQK-------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYL-----------KDT----   93 (303)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------ETT----
T ss_pred             eEEEEEEECCCCc-------EEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEe-----------cCC----
Confidence            5666666666666       8899887543222221111333  688899999997666551           111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++.       +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        94 ~~~lv~e~~~~~~L~~~~~-------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~kl  160 (303)
T 3a7i_A           94 KLWIIMEYLGGGSALDLLE-------PGPLDETQIATILREILKGLDYLHSEKKIHRDIK-----AANVLLSE-HGEVKL  160 (303)
T ss_dssp             EEEEEEECCTTEEHHHHHT-------TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCEEE
T ss_pred             eEEEEEEeCCCCcHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC-----hheEEECC-CCCEEE
Confidence            27889999975 5544442       2357888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ......+++|..|+||
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  188 (303)
T 3a7i_A          161 ADFGVAGQLTDTQIKRNTFVGTPFWMAP  188 (303)
T ss_dssp             CCCTTCEECBTTBCCBCCCCSCGGGCCH
T ss_pred             eecccceecCccccccCccCCCcCccCH
Confidence            9999987322  2234567889999998

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=98.99  E-value=2.3e-11  Score=122.24  Aligned_cols=148  Identities=14%  Similarity=0.097  Sum_probs=104.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC-------CCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP-------TTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVD  401 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~-------~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~  401 (512)
                      +.|+++.+..+|.       .+|+|.+......       .....-.+|  +++.++||||+...+.|           .
T Consensus        24 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~   85 (322)
T 2ycf_A           24 GEVKLAFERKTCK-------KVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF-----------D   85 (322)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEE-----------E
T ss_pred             EEEEEEEEcCCCc-------EEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEE-----------c
Confidence            6778888887777       8899987543210       001111233  68889999999765544           1


Q ss_pred             cCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC
Q psy17422        402 NEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE  479 (512)
Q Consensus       402 ~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~  479 (512)
                      . ..    .+.+++++.. ++..++      ......+...+..++.|++.++.+ |..+|+|+|||     |+||++..
T Consensus        86 ~-~~----~~lv~e~~~~~~L~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----p~NIl~~~  149 (322)
T 2ycf_A           86 A-ED----YYIVLELMEGGELFDKV------VGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLK-----PENVLLSS  149 (322)
T ss_dssp             S-SS----EEEEEECCTTEETHHHH------STTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESS
T ss_pred             C-Cc----eEEEEecCCCCcHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HHHEEEec
Confidence            1 11    6789999975 554444      333457888999999999999999 99999999999     99999975


Q ss_pred             CC--CeEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        480 SK--LVLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       480 ~~--~~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ..  ..+|++|||+++... .......++|+.|+||
T Consensus       150 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aP  185 (322)
T 2ycf_A          150 QEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAP  185 (322)
T ss_dssp             SSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCH
T ss_pred             CCCCCeEEEccCccceecccccccccccCCcCccCc
Confidence            32  359999999987432 2223456788999987

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.99  E-value=3.1e-11  Score=121.83  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=104.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+............ .+|  ++..+ +||||+...+.|           ...+  
T Consensus        43 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~-----------~~~~--  102 (327)
T 3lm5_A           43 AVVRQCISKSTGQ-------EYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY-----------ENTS--  102 (327)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEE-----------EeCC--
Confidence            6788888888888       8999988654433222223 344  45555 579999776655           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--CCC
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--SKL  482 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--~~~  482 (512)
                        .++.++++|.. ++..++.-    ......+...+..++.|++.++.+ |..+|+|+|||     |+||++..  ..+
T Consensus       103 --~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dik-----p~NIl~~~~~~~~  171 (327)
T 3lm5_A          103 --EIILILEYAAGGEIFSLCLP----ELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLK-----PQNILLSSIYPLG  171 (327)
T ss_dssp             --EEEEEEECCTTEEGGGGGSS----CC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEESCBTTBC
T ss_pred             --eEEEEEEecCCCcHHHHHHH----hcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCC-----hHHEEEecCCCCC
Confidence              27889999975 44333210    112457888999999999999999 99999999999     99999975  247


Q ss_pred             eEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        483 VLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 ~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      .+|++|||+++.. ........++|+.|+||
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aP  202 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACELREIMGTPEYLAP  202 (327)
T ss_dssp             CEEECCGGGCEEC---------CCCGGGCCH
T ss_pred             cEEEeeCccccccCCccccccccCCcCccCC
Confidence            8999999999743 22334567899999998

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=98.98  E-value=5.8e-11  Score=120.13  Aligned_cols=142  Identities=14%  Similarity=0.075  Sum_probs=96.6

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      ..+|+|.+...........-.+|  ++..+ +||||+...+.|.           ..    -+++.++|++. .++..++
T Consensus        76 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----------~~----~~~~lv~e~~~~g~L~~~l  140 (344)
T 1rjb_A           76 IQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT-----------LS----GPIYLIFEYCCYGDLLNYL  140 (344)
T ss_dssp             EEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------SS----SSCEEEEECCTTCBHHHHH
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe-----------eC----CccEEEEecCCCCcHHHHH
Confidence            36889887643322222222344  57777 8999997766551           11    13788999997 4777777


Q ss_pred             HhHHhh-----------------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        426 ALQQLY-----------------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       426 ~L~~iy-----------------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      .-....                 ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----p~NIll~~-~~~~kL~  214 (344)
T 1rjb_A          141 RSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA-----ARNVLVTH-GKVVKIC  214 (344)
T ss_dssp             HTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS-----GGGEEEET-TTEEEEC
T ss_pred             hhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----hhhEEEcC-CCcEEeC
Confidence            532210                 001125778899999999999999 99999999999     99999975 4899999


Q ss_pred             cCCCCCCCC-C---CCccCeeeeeeeccC
Q psy17422        488 DFGSASWSH-E---NEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~-~---~~~t~yv~tr~YraP  512 (512)
                      |||+++... .   .......+|..|+||
T Consensus       215 Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  243 (344)
T 1rjb_A          215 DFGLARDIMSDSNYVVRGNARLPVKWMAP  243 (344)
T ss_dssp             CCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             CCccCcccccCccceeccCccCccCccCH
Confidence            999987321 1   123456778889998

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.98  E-value=5.4e-11  Score=119.71  Aligned_cols=148  Identities=20%  Similarity=0.228  Sum_probs=108.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC--------CCCchHHHHHHhhCC--CCCCCcCCchhhhhHHhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP--------TTVPSSVASILNDNA--CVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~--------~~i~~~~~ell~~~~--~~ni~~~~~~fw~l~~alk~F~  400 (512)
                      +.|+++.+..+|.       .+|+|.+......        ..+..++ ++++.++  |+||+...+.|.          
T Consensus        57 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~E~-~~l~~l~~~~~~i~~~~~~~~----------  118 (320)
T 3a99_A           57 GSVYSGIRVSDNL-------PVAIKHVEKDRISDWGELPNGTRVPMEV-VLLKKVSSGFSGVIRLLDWFE----------  118 (320)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEEGGGCCCEEECTTCCEEEHHH-HHHHHHCSSSCSBCCEEEEEE----------
T ss_pred             eEEEEEEECCCCc-------EEEEEEEecccchhhhhhhhhhHHHHHH-HHHHhhccCCCCceEEEEEEe----------
Confidence            6777777777776       8999988654321        1122222 2566654  599987766551          


Q ss_pred             hcCCCCCcceeEEecccc--CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        401 DNEGNGNLPLRGSLPDMT--ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~--~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                       ..+    ....+++++.  .++..++.      .+...+...+..++.|++.+|.+ |..+|+|+|||     |+||++
T Consensus       119 -~~~----~~~lv~e~~~~~~~L~~~l~------~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll  182 (320)
T 3a99_A          119 -RPD----SFVLILERPEPVQDLFDFIT------ERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIK-----DENILI  182 (320)
T ss_dssp             -CSS----EEEEEEECCSSEEEHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEE
T ss_pred             -cCC----cEEEEEEcCCCCccHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCC-----HHHEEE
Confidence             111    2677888876  45555553      33457888999999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ....+.+|++|||+++.........+.+|+.|+||
T Consensus       183 ~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aP  217 (320)
T 3a99_A          183 DLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPP  217 (320)
T ss_dssp             ETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCH
T ss_pred             eCCCCCEEEeeCccccccccccccCCCCCccCCCh
Confidence            75568999999999985555556677899999998

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.98  E-value=4.3e-11  Score=119.38  Aligned_cols=148  Identities=19%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--------CCCCchHHHHHHhhC----CCCCCCcCCchhhhhHHhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--------PTTVPSSVASILNDN----ACVNLTSKSEPFWILAKAVKD  398 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--------~~~i~~~~~ell~~~----~~~ni~~~~~~fw~l~~alk~  398 (512)
                      +.|+++.+..+|.       .+|+|.+.....        ...+..+++ ++..+    +|+||+...+.|.        
T Consensus        45 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~e~~-~l~~l~~~~~h~~i~~~~~~~~--------  108 (312)
T 2iwi_A           45 GTVFAGHRLTDRL-------QVAIKVIPRNRVLGWSPLSDSVTCPLEVA-LLWKVGAGGGHPGVIRLLDWFE--------  108 (312)
T ss_dssp             EEEEEEECTTTCC-------EEEEEECCSTTTC--------CCCCHHHH-HHHHHHSSCCCSSBCCEEEEC---------
T ss_pred             EEEEEEEEccCCe-------EEEEEEEecccccccccchhhHHHHHHHH-HHHhhcccCCCCCeeeEEEEEe--------
Confidence            6788888877777       889998754311        112222222 34444    8999998766551        


Q ss_pred             hhhcCCCCCcceeEEecc-cc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        399 FVDNEGNGNLPLRGSLPD-MT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       399 F~~~~~~~~lPl~~~lpd-m~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                        . .+    ..+.++++ +. .++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||
T Consensus       109 --~-~~----~~~~v~e~~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Ni  170 (312)
T 2iwi_A          109 --T-QE----GFMLVLERPLPAQDLFDYIT------EKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIK-----DENI  170 (312)
T ss_dssp             -----------CEEEEECCSSEEEHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCS-----GGGE
T ss_pred             --c-CC----eEEEEEEecCCCCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----hhhE
Confidence              1 11    15677777 43 56655553      23357888999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++....+.+|++|||+++.........+.+|..|+||
T Consensus       171 l~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aP  207 (312)
T 2iwi_A          171 LIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPP  207 (312)
T ss_dssp             EEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCH
T ss_pred             EEeCCCCeEEEEEcchhhhcccCcccccCCcccccCc
Confidence            9974568999999999885544556677899999987

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=98.98  E-value=8e-11  Score=117.34  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=98.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .+|  +++.++|+||+.....|.          . .+  
T Consensus        46 g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----------~-~~--  105 (310)
T 2wqm_A           46 SEVYRAACLLDGV-------PVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFI----------E-DN--  105 (310)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE----------E-TT--
T ss_pred             ceEEEEEEcCCCc-------eEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE----------c-CC--
Confidence            5677777766666       88998775421111 11111 233  688899999997665541          1 11  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+++++.. ++..++.-..  ..+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus       106 --~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~-----p~NIl~~~-~~~~  175 (310)
T 2wqm_A          106 --ELNIVLELADAGDLSRMIKHFK--KQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIK-----PANVFITA-TGVV  175 (310)
T ss_dssp             --EEEEEEECCCSCBHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCE
T ss_pred             --cEEEEEecCCCCCHHHHHHHhc--ccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCc-----HHHEEEcC-CCCE
Confidence              37789999985 7777664321  223457888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++...  ......+.+|..|+||
T Consensus       176 kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  205 (310)
T 2wqm_A          176 KLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  205 (310)
T ss_dssp             EECCC------------------CCSSCCH
T ss_pred             EEEeccceeeecCCCccccccCCCeeEeCh
Confidence            999999987432  2233456889999987

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=98.97  E-value=7.9e-11  Score=116.42  Aligned_cols=148  Identities=16%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCc-------hH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVP-------SS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDF  399 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~-------~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F  399 (512)
                      +.|+++.++.+|.       .+|+|.+........-.       .. .+|  ++..+ +||||++..+.|          
T Consensus        31 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~----------   93 (298)
T 1phk_A           31 SVVRRCIHKPTCK-------EYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY----------   93 (298)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE----------
T ss_pred             eEEEEEEEcCcCc-------eEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee----------
Confidence            6788888887777       78888875432111000       11 233  56666 499999776655          


Q ss_pred             hhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        400 VDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       400 ~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                       ...    -.++.+++++. .++..++.      .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++
T Consensus        94 -~~~----~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~  157 (298)
T 1phk_A           94 -ETN----TFFFLVFDLMKKGELFDYLT------EKVTLSEKETRKIMRALLEVICALHKLNIVHRDLK-----PENILL  157 (298)
T ss_dssp             -ECS----SEEEEEEECCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEE
T ss_pred             -ccC----CeEEEEEeccCCCcHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----cceEEE
Confidence             111    13788999997 56666654      33457888999999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      .. .+.+|++|||+++. .........++|..|+||
T Consensus       158 ~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aP  192 (298)
T 1phk_A          158 DD-DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAP  192 (298)
T ss_dssp             CT-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCH
T ss_pred             cC-CCcEEEecccchhhcCCCcccccccCCccccCH
Confidence            75 48899999999873 233345567889999987

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=98.97  E-value=3.3e-11  Score=121.64  Aligned_cols=158  Identities=12%  Similarity=0.024  Sum_probs=102.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+.....  ..++..+|+|.+...... ..... .+|  ++..++||||++..+.|.           ..    
T Consensus        61 g~Vy~~~~~~~~~--~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------~~----  122 (343)
T 1luf_A           61 GRVFQARAPGLLP--YEPFTMVAVKMLKEEASA-DMQADFQREAALMAEFDNPNIVKLLGVCA-----------VG----  122 (343)
T ss_dssp             CEEEEEEEETSST--TSSEEEEEEEECCTTCCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----------SS----
T ss_pred             eeEEEEEecCcCC--CCCceeEEEEEeccccCH-HHHHHHHHHHHHHHhCCCCCEEEEEEEEc-----------cC----
Confidence            4555555543221  011236888887542211 11111 233  688899999998766551           11    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhh------------------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHh
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLY------------------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKL  467 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy------------------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~  467 (512)
                      -.++.++|++.. ++..++.-....                  ......+...+..++.|++.++.+ |..+|+|+||| 
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk-  201 (343)
T 1luf_A          123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA-  201 (343)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-
T ss_pred             CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-
Confidence            137889999974 777777532100                  001357888999999999999999 99999999999 


Q ss_pred             hccccccccccCCCCeEEEecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        468 FCRNASFIHVNESKLVLKLCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       468 Fc~n~~nIll~~~~~~~Kl~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                          |+||++.. .+.+|++|||+++...    ........+|..|+||
T Consensus       202 ----p~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  245 (343)
T 1luf_A          202 ----TRNCLVGE-NMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  245 (343)
T ss_dssp             ----GGGEEECG-GGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             ----cceEEECC-CCeEEEeecCCCcccccCccccccCCCcccceecCh
Confidence                99999975 4889999999986211    1122345678889887

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.97  E-value=3.7e-11  Score=128.79  Aligned_cols=147  Identities=15%  Similarity=0.108  Sum_probs=104.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.++.       .+|+|.+....  .. ... .+|  +|..++||||++....+           ..    .
T Consensus       234 g~Vy~~~~~~~~~-------~vavK~~~~~~--~~-~~~~~~E~~~l~~l~hpniv~l~~~~-----------~~----~  288 (495)
T 1opk_A          234 GEVYEGVWKKYSL-------TVAVKTLKEDT--ME-VEEFLKEAAVMKEIKHPNLVQLLGVC-----------TR----E  288 (495)
T ss_dssp             SSEEEEEEGGGTE-------EEEEEECCSSS--SC-HHHHHHHHHHHHHCCCTTBCCEEEEE-----------CS----S
T ss_pred             eEEEEEEEcCCCe-------EEEEEEecCcc--cc-hHHHHHHHHHHHhcCCCCEeeEEEEE-----------ec----C
Confidence            5566666665555       78999875421  11 122 344  78889999999776655           11    1


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -+++.++++|. .++..+++-.    .+...+...+..++.|++.++.| |.++|+|||||     |+||++.. .+.+|
T Consensus       289 ~~~~lv~E~~~~g~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk-----p~NIll~~-~~~~k  358 (495)
T 1opk_A          289 PPFYIITEFMTYGNLLDYLREC----NRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLA-----ARNCLVGE-NHLVK  358 (495)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHS----CTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECG-GGCEE
T ss_pred             CcEEEEEEccCCCCHHHHHHhc----CcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----hhhEEECC-CCcEE
Confidence            24889999998 5777776421    12346788889999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCCCC---ccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENE---ITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~---~t~yv~tr~YraP  512 (512)
                      ++|||+++......   .....++..|+||
T Consensus       359 l~DFG~a~~~~~~~~~~~~~~~~~~~y~aP  388 (495)
T 1opk_A          359 VADFGLSRLMTGDTYTAHAGAKFPIKWTAP  388 (495)
T ss_dssp             ECCTTCEECCTTCCEECCTTCCCCGGGCCH
T ss_pred             EeecccceeccCCceeecCCCcCCcceeCH
Confidence            99999987433222   2233455678887

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=98.97  E-value=8.3e-11  Score=117.29  Aligned_cols=146  Identities=21%  Similarity=0.194  Sum_probs=108.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.++.+|.       .+|+|.+...   .....-.+|  ++..++||||+...+.++           ..+    
T Consensus        43 g~Vy~~~~~~~~~-------~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~----   97 (314)
T 3com_A           43 GSVYKAIHKETGQ-------IVAIKQVPVE---SDLQEIIKEISIMQQCDSPHVVKYYGSYF-----------KNT----   97 (314)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEETT---SCCHHHHHHHHHHHTCCCTTBCCEEEEEE-----------ETT----
T ss_pred             eEEEEEEECCCCC-------EEEEEecCch---HHHHHHHHHHHHHHhCCCCCCccEEEEEE-----------eCC----
Confidence            6788888887787       8899887542   222222444  688899999997766552           111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+++++.. ++..++...     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        98 ~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~kl  166 (314)
T 3com_A           98 DLWIVMEYCGAGSVSDIIRLR-----NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIK-----AGNILLNT-EGHAKL  166 (314)
T ss_dssp             EEEEEEECCTTEEHHHHHHHH-----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEEE
T ss_pred             EEEEEeecCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcC-----HHHEEECC-CCCEEE
Confidence            27889999975 666666422     3357888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...  ........+|..|+||
T Consensus       167 ~dfg~~~~~~~~~~~~~~~~~~~~y~aP  194 (314)
T 3com_A          167 ADFGVAGQLTDTMAKRNTVIGTPFWMAP  194 (314)
T ss_dssp             CCCTTCEECBTTBSCBCCCCSCGGGCCH
T ss_pred             eecccchhhhhhccccCccCCCCCccCh
Confidence            9999986322  2234456789999987

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=98.97  E-value=3.1e-11  Score=120.14  Aligned_cols=142  Identities=13%  Similarity=0.111  Sum_probs=95.7

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      ..+|+|.+...........-.+|  +++.++||||++..+.|           ...+    .++.+++++. .++..++.
T Consensus        54 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~~~----~~~lv~e~~~~~~L~~~l~  118 (314)
T 2ivs_A           54 TTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-----------SQDG----PLLLIVEYAKYGSLRGFLR  118 (314)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------CSSS----SCEEEEECCTTCBHHHHHH
T ss_pred             ceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEE-----------ecCC----ceEEEEeecCCCCHHHHHH
Confidence            36788877532211111111233  68888999999766554           1111    2778999997 67777765


Q ss_pred             hHHhh------------------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        427 LQQLY------------------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       427 L~~iy------------------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      -....                  ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dik-----p~NIli~~-~~~~kl~  192 (314)
T 2ivs_A          119 ESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLA-----ARNILVAE-GRKMKIS  192 (314)
T ss_dssp             HTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEET-TTEEEEC
T ss_pred             HHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccc-----hheEEEcC-CCCEEEc
Confidence            32210                  011236778899999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCCC--CC--CccCeeeeeeeccC
Q psy17422        488 DFGSASWSH--EN--EITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~--~~--~~t~yv~tr~YraP  512 (512)
                      |||+++...  ..  ......+|..|+||
T Consensus       193 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  221 (314)
T 2ivs_A          193 DFGLSRDVYEEDSYVKRSQGRIPVKWMAI  221 (314)
T ss_dssp             CCTTCEECTTTSCEECSSCCCSCGGGCCH
T ss_pred             cccccccccccccceeccCCCCcccccCh
Confidence            999987321  11  12344567778887

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=98.96  E-value=1.7e-10  Score=113.55  Aligned_cols=147  Identities=14%  Similarity=0.093  Sum_probs=104.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCc-----hH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVP-----SS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDN  402 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~-----~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~  402 (512)
                      +.|+++.+..++.       .+|+|.+..........     .. .+|  +++.++||||++..+.|           ..
T Consensus        33 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~   94 (287)
T 4f0f_A           33 GLVHKGRLVKDKS-------VVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLM-----------HN   94 (287)
T ss_dssp             SCEEEEEETTTCC-------EEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEE-----------TT
T ss_pred             eeEEEEEEcCCce-------EEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheee-----------cC
Confidence            5677777766666       78999875432221111     22 234  68889999999776554           11


Q ss_pred             CCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhcccccccccc
Q psy17422        403 EGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVN  478 (512)
Q Consensus       403 ~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~  478 (512)
                        .    -+.+++++. .++..++.     +.....+...+..++.|++.++.+ |..+  |+|+|||     |+||++.
T Consensus        95 --~----~~lv~e~~~~~~L~~~l~-----~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dik-----p~Nil~~  158 (287)
T 4f0f_A           95 --P----PRMVMEFVPCGDLYHRLL-----DKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLR-----SPNIFLQ  158 (287)
T ss_dssp             --T----TEEEEECCTTCBHHHHHH-----CTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCS-----GGGEEES
T ss_pred             --C----CeEEEEecCCCCHHHHHh-----cccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCC-----cceEEEe
Confidence              1    257889987 45544442     233457888999999999999999 9999  9999999     9999996


Q ss_pred             CCCC----eEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        479 ESKL----VLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~~~~----~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ....    .+|++|||+++.... .....++|..|+||
T Consensus       159 ~~~~~~~~~~kl~Dfg~~~~~~~-~~~~~~g~~~y~aP  195 (287)
T 4f0f_A          159 SLDENAPVCAKVADFGLSQQSVH-SVSGLLGNFQWMAP  195 (287)
T ss_dssp             CCCTTCSCCEEECCCTTCBCCSS-CEECCCCCCTTSCG
T ss_pred             ccCCCCceeEEeCCCCccccccc-cccccCCCccccCc
Confidence            5321    389999999984332 34567889999998

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=98.96  E-value=5.7e-11  Score=118.92  Aligned_cols=141  Identities=16%  Similarity=0.134  Sum_probs=97.8

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  +++.++|+||++..+.|           ...    -.++.+++++. .++..++.-
T Consensus        57 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~~  121 (322)
T 1p4o_A           57 RVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV-----------SQG----QPTLVIMELMTRGDLKSYLRS  121 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE-----------CSS----SSCEEEEECCTTCBHHHHHHH
T ss_pred             EEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE-----------ccC----CccEEEEEeCCCCcHHHHHHH
Confidence            6788877542111000011233  68889999999766554           111    13678999997 588888764


Q ss_pred             HHhhhh----ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC----C
Q psy17422        428 QQLYRD----QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE----N  498 (512)
Q Consensus       428 ~~iy~~----ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~----~  498 (512)
                      ......    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....    .
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik-----p~NIli~~-~~~~kl~Dfg~~~~~~~~~~~~  195 (322)
T 1p4o_A          122 LRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLA-----ARNCMVAE-DFTVKIGDFGMTRDIYETDYYR  195 (322)
T ss_dssp             HHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCS-----GGGEEECT-TCCEEECCTTCCCGGGGGGCEE
T ss_pred             hchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCc-----cceEEEcC-CCeEEECcCccccccccccccc
Confidence            332111    1235788999999999999999 99999999999     99999975 48899999999873221    1


Q ss_pred             CccCeeeeeeeccC
Q psy17422        499 EITPYLVSRFYRAP  512 (512)
Q Consensus       499 ~~t~yv~tr~YraP  512 (512)
                      .....++|..|+||
T Consensus       196 ~~~~~~~~~~y~aP  209 (322)
T 1p4o_A          196 KGGKGLLPVRWMSP  209 (322)
T ss_dssp             GGGSSEECGGGCCH
T ss_pred             cccCCCCCCCccCh
Confidence            22345778889987

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.96  E-value=3.4e-11  Score=123.44  Aligned_cols=118  Identities=11%  Similarity=0.017  Sum_probs=87.1

Q ss_pred             HhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHh
Q psy17422        374 LNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQL  453 (512)
Q Consensus       374 l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l  453 (512)
                      +..++|+||+.....++          .. ..+..-++.+|++|..++..++.-     .....+...+..++.|++.+|
T Consensus       102 ~~~l~h~~iv~~~~~~~----------~~-~~~~~~~~lv~e~~g~~L~~~~~~-----~~~~l~~~~~~~i~~qi~~~l  165 (364)
T 3op5_A          102 TRKLKYLGVPKYWGSGL----------HD-KNGKSYRFMIMDRFGSDLQKIYEA-----NAKRFSRKTVLQLSLRILDIL  165 (364)
T ss_dssp             HTTCSCCCSCCEEEEEE----------EE-ETTEEEEEEEEECEEEEHHHHHHH-----TTSCCCHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCCeEEeeee----------ec-cCCcceEEEEEeCCCCCHHHHHHh-----ccCCCCHHHHHHHHHHHHHHH
Confidence            55678999997665542          11 111123678999997776666542     123578899999999999999


Q ss_pred             CC-CCCCCChHHHHhhccccccccccC-CCCeEEEecCCCCCCCC---------CCCccCeeeeeeeccC
Q psy17422        454 GQ-PSSAITEAQVKLFCRNASFIHVNE-SKLVLKLCDFGSASWSH---------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       454 ~~-h~~~I~hrdIK~Fc~n~~nIll~~-~~~~~Kl~DfGlar~~~---------~~~~t~yv~tr~YraP  512 (512)
                      .| |..+|+|||||     |+||++.. ..+.+|++|||+++...         .......++|..|+||
T Consensus       166 ~~lH~~~iiHrDlk-----p~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  230 (364)
T 3op5_A          166 EYIHEHEYVHGDIK-----ASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSI  230 (364)
T ss_dssp             HHHHHTTEECCCCC-----GGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCH
T ss_pred             HHHHHCCeEEecCC-----HHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCH
Confidence            99 99999999999     99999972 34789999999986211         1223456799999998

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=98.96  E-value=4.2e-11  Score=118.42  Aligned_cols=134  Identities=16%  Similarity=0.083  Sum_probs=94.1

Q ss_pred             HhHHHHhhhhcCCCCCchHH--HHHHhh--CCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSV--ASILND--NACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~--~ell~~--~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      .+|+|.+....    .....  .+++..  ++||||++....++          .. ......++.+++++.. ++..++
T Consensus        33 ~vavK~~~~~~----~~~~~~e~~~~~~~~l~h~niv~~~~~~~----------~~-~~~~~~~~lv~e~~~~g~L~~~l   97 (301)
T 3q4u_A           33 NVAVKIFSSRD----EKSWFRETELYNTVMLRHENILGFIASDM----------TS-RHSSTQLWLITHYHEMGSLYDYL   97 (301)
T ss_dssp             EEEEEEECGGG----HHHHHHHHHHHHHTCCCCTTBCCEEEEEE----------EE-ETTEEEEEEEECCCTTCBHHHHH
T ss_pred             EEEEEEecccc----chhhHHHHHHHHHhhccCcCeeeEEEeec----------cc-cCCCceeEEehhhccCCCHHHHH
Confidence            78888764321    11112  235554  78999997655431          11 0112237789999975 666666


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-C--------CCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P--------SSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH  496 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h--------~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~  496 (512)
                      +       +...+...+..++.|++.++.+ |        ..+|+|+|||     |+||++.. .+.+|++|||+++...
T Consensus        98 ~-------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlk-----p~Nill~~-~~~~kl~Dfg~a~~~~  164 (301)
T 3q4u_A           98 Q-------LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLK-----SKNILVKK-NGQCCIADLGLAVMHS  164 (301)
T ss_dssp             T-------TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCC-----GGGEEECT-TSCEEECCCTTCEEEE
T ss_pred             h-------hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCC-----hHhEEEcC-CCCEEEeeCCCeeecc
Confidence            3       2347888899999999999999 9        9999999999     99999975 4899999999986321


Q ss_pred             C------CCccCeeeeeeeccC
Q psy17422        497 E------NEITPYLVSRFYRAP  512 (512)
Q Consensus       497 ~------~~~t~yv~tr~YraP  512 (512)
                      .      ......++|+.|+||
T Consensus       165 ~~~~~~~~~~~~~~gt~~y~aP  186 (301)
T 3q4u_A          165 QSTNQLDVGNNPRVGTKRYMAP  186 (301)
T ss_dssp             TTTTEEECCCCCCCCCGGGCCH
T ss_pred             cccccccccccccccccceeCh
Confidence            1      113456899999998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.96  E-value=3e-11  Score=134.56  Aligned_cols=148  Identities=14%  Similarity=0.056  Sum_probs=101.2

Q ss_pred             cchhhhcccc-CCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDE-NGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~-~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+.. +|.       .+|+|.+...........-.+|  ++..++||||++..+.|.          .....+.
T Consensus        94 g~Vy~a~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----------~~~~~~~  156 (681)
T 2pzi_A           94 GWIYLALDRNVNGR-------PVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVE----------HTDRHGD  156 (681)
T ss_dssp             EEEEEEEEGGGTTE-------EEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEE----------EECTTSC
T ss_pred             eEEEEEEEcCCCCc-------EEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEe----------ecCCCCC
Confidence            5677776654 455       7888876432110000011234  688899999998766551          1111122


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      .-++.+|++|.. ++..++      ..  ..+...+..++.|++.+|.| |..+|+|||||     |+||++..  +.+|
T Consensus       157 ~~~~lv~E~~~g~~L~~~~------~~--~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlk-----p~NIll~~--~~~k  221 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSK------GQ--KLPVAEAIAYLLEILPALSYLHSIGLVYNDLK-----PENIMLTE--EQLK  221 (681)
T ss_dssp             EEEEEEEECCCCEECC----------C--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECS--SCEE
T ss_pred             ceeEEEEEeCCCCcHHHHH------hC--CCCHHHHHHHHHHHHHHHHHHHHCCCeecccC-----hHHeEEeC--CcEE
Confidence            225899999975 333322      22  47888999999999999999 99999999999     99999974  4789


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.....  +..++|+.|+||
T Consensus       222 l~DFG~a~~~~~~--~~~~gt~~y~aP  246 (681)
T 2pzi_A          222 LIDLGAVSRINSF--GYLYGTPGFQAP  246 (681)
T ss_dssp             ECCCTTCEETTCC--SCCCCCTTTSCT
T ss_pred             EEecccchhcccC--CccCCCccccCH
Confidence            9999998743322  556899999998

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=98.95  E-value=7.4e-11  Score=116.32  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=105.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+....  ...... .+|  ++..++||||+...+.|           ...+   
T Consensus        36 g~Vy~~~~~~~~~-------~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-----------~~~~---   92 (295)
T 2clq_A           36 GIVYAGRDLSNQV-------RIAIKEIPERD--SRYSQPLHEEIALHKHLKHKNIVQYLGSF-----------SENG---   92 (295)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEECCC--C---HHHHHHHHHHHTCCCTTBCCEEEEE-----------EETT---
T ss_pred             EEEEEEEECCCCe-------EEEEEEccCCc--hHHHHHHHHHHHHHHhCCCCCEeeEeeEE-----------EeCC---
Confidence            6677777777776       88998875431  222222 333  68889999999766554           1111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+++++. .++..++.-.   ......+...+..++.|++.++.+ |..+|+|+|||     |+||++....+.+|
T Consensus        93 -~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~~~~~~~~k  163 (295)
T 2clq_A           93 -FIKIFMEQVPGGSLSALLRSK---WGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIK-----GDNVLINTYSGVLK  163 (295)
T ss_dssp             -EEEEEEECCSEEEHHHHHHHT---TCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEETTTCCEE
T ss_pred             -cEEEEEEeCCCCCHHHHHHhh---ccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCC-----hhhEEEECCCCCEE
Confidence             3678899986 5666665421   112235677888899999999999 99999999999     99999976568999


Q ss_pred             EecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...  ......+.+|..|+||
T Consensus       164 l~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  192 (295)
T 2clq_A          164 ISDFGTSKRLAGINPCTETFTGTLQYMAP  192 (295)
T ss_dssp             ECCTTTCEESCC-----CCCCCCGGGCCH
T ss_pred             EeecccccccCCCCCcccccCCCccccCh
Confidence            99999987322  2223466889999998

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.95  E-value=8.4e-11  Score=117.89  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=96.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+..... .....-.+|  ++..+. ||||++....|..-     .  .....+.
T Consensus        42 g~V~~~~~~~~~~-------~vavK~~~~~~~-~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~-----~--~~~~~~~  106 (337)
T 3ll6_A           42 AFVYEAQDVGSGR-------EYALKRLLSNEE-EKNRAIIQEVCFMKKLSGHPNIVQFCSAASIG-----K--EESDTGQ  106 (337)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEESSH-HHHHHHHHHHHHHHHHTTSTTBCCEEEEEEEC-----T--TTSTTSS
T ss_pred             eEEEEEEECCCCc-------EEEEEEecCCch-HHHHHHHHHHHHHHHhccCCChhhcccccccc-----c--cccccCC
Confidence            5677777777777       889997633110 000111233  456664 99999765544100     0  0001122


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      -.++.+++++..++..++.-   ...+...+...+..++.|++.++.+ |..+  |+|+|||     |+||++.. .+.+
T Consensus       107 ~~~~lv~e~~~g~L~~~l~~---~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dik-----p~NIl~~~-~~~~  177 (337)
T 3ll6_A          107 AEFLLLTELCKGQLVEFLKK---MESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLK-----VENLLLSN-QGTI  177 (337)
T ss_dssp             EEEEEEEECCSEEHHHHHHH---HHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCC-----GGGCEECT-TSCE
T ss_pred             ceEEEEEEecCCCHHHHHHH---hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCC-----cccEEECC-CCCE
Confidence            34778899998887777642   2233457888999999999999999 9999  9999999     99999975 4789


Q ss_pred             EEecCCCCCCCCCC--------------CccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHEN--------------EITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~--------------~~t~yv~tr~YraP  512 (512)
                      |++|||+++.....              .....++|..|+||
T Consensus       178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aP  219 (337)
T 3ll6_A          178 KLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTP  219 (337)
T ss_dssp             EBCCCTTCBCCSSCC---------------------------
T ss_pred             EEecCccceeccccCcccccccccccchhhccccCCCCcCCh
Confidence            99999998732211              11256789999998

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.95  E-value=3e-11  Score=127.44  Aligned_cols=134  Identities=14%  Similarity=0.030  Sum_probs=90.9

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~  426 (512)
                      ..+|+|.+....    .....+|  +|+.+ +||||++....+           ....    .++.++++|..++..++.
T Consensus        49 ~~vAvK~~~~~~----~~~~~~E~~~l~~l~~HpnIv~l~~~~-----------~~~~----~~~lv~E~~~g~L~~~l~  109 (432)
T 3p23_A           49 RDVAVKRILPEC----FSFADREVQLLRESDEHPNVIRYFCTE-----------KDRQ----FQYIAIELCAATLQEYVE  109 (432)
T ss_dssp             SEEEEEEECTTT----EEECHHHHHHHHHSCCCTTBCCEEEEE-----------EETT----EEEEEEECCSEEHHHHHH
T ss_pred             eEEEEEEECHHH----HHHHHHHHHHHHhccCCCCcCeEEEEE-----------ecCC----EEEEEEECCCCCHHHHHH
Confidence            389999875421    1112333  67777 799999765444           1111    278999999888777765


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC----CCeEEEecCCCCCCCCC----
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES----KLVLKLCDFGSASWSHE----  497 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~----~~~~Kl~DfGlar~~~~----  497 (512)
                      -..     .......+..++.|++.|+.| |..+|+|||||     |+||++...    ...+|++|||+++....    
T Consensus       110 ~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK-----p~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~  179 (432)
T 3p23_A          110 QKD-----FAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLK-----PHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS  179 (432)
T ss_dssp             SSS-----CCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCS-----TTSEEECCCBTTTBCCEEECCTTEEECC------
T ss_pred             hcC-----CCccchhHHHHHHHHHHHHHHHHHCcCEeCCCC-----HHHEEEecCCCCCceeEEEecccceeeccCCCcc
Confidence            322     123333456789999999999 99999999999     999999532    23578999999873321    


Q ss_pred             -CCccCeeeeeeeccC
Q psy17422        498 -NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 -~~~t~yv~tr~YraP  512 (512)
                       ...+.+++|++|+||
T Consensus       180 ~~~~~~~~gt~~y~AP  195 (432)
T 3p23_A          180 FSRRSGVPGTEGWIAP  195 (432)
T ss_dssp             ------CCSCTTSCCG
T ss_pred             eeeccccCCCcCccCh
Confidence             234567899999998

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.95  E-value=9.5e-11  Score=117.62  Aligned_cols=149  Identities=17%  Similarity=0.043  Sum_probs=101.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++ +|.       .+|+|.+....  ...... .+|  ++..++||||++..+.|           ...+   
T Consensus        53 g~Vy~~~~~-~~~-------~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~~---  108 (321)
T 2qkw_B           53 GKVYKGVLR-DGA-------KVALKRRTPES--SQGIEEFETEIETLSFCRHPHLVSLIGFC-----------DERN---  108 (321)
T ss_dssp             SEEEEEECT-TCC-------EEEEEECCSCC--SSHHHHHHHHHHGGGSCCCTTBCCEEEEC-----------CCTT---
T ss_pred             eeEEEEEEC-CCC-------EEEEEEecccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------cCCC---
Confidence            556666543 344       78888764321  111112 334  57888999999776655           1111   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.++++|.. ++..++.-..  ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       109 -~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlk-----p~Nil~~~-~~~~k  179 (321)
T 2qkw_B          109 -EMILIYKYMENGNLKRHLYGSD--LPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVK-----SINILLDE-NFVPK  179 (321)
T ss_dssp             -CCEEEEECCTTCBTGGGSSSSC--CCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----STTEEECT-TCCEE
T ss_pred             -eEEEEEEcCCCCcHHHHHhccC--CCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCC-----HHHEEECC-CCCEE
Confidence             26788999974 5544432111  111246788899999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..    .....+...+|..|+||
T Consensus       180 l~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aP  210 (321)
T 2qkw_B          180 ITDFGISKKGTELDQTHLSTVVKGTLGYIDP  210 (321)
T ss_dssp             ECCCTTCEECSSSSCCCCBCCCEEETTTCCH
T ss_pred             EeecccccccccccccccccccCCCccccCH
Confidence            9999998732    12234567899999998

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=98.95  E-value=4.5e-11  Score=118.29  Aligned_cols=149  Identities=16%  Similarity=0.161  Sum_probs=100.0

Q ss_pred             cchhhhc----cccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIR----KDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~----~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.    ++.+|.       .+|+|.+....  ...... .+|  ++..++||||++..+.|+.         ...
T Consensus        24 g~V~~~~~~~~~~~~~~-------~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---------~~~   85 (295)
T 3ugc_A           24 GSVEMCRYDPLQDNTGE-------VVAVKKLQHST--EEHLRDFEREIEILKSLQHDNIVKYKGVCYS---------AGR   85 (295)
T ss_dssp             EEEEEEEECTTCSSCCE-------EEEEEEESCCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEECH---------HHH
T ss_pred             EEEEEEEEecccCCCCc-------EEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---------CCC
Confidence            4565555    445555       88998765321  000011 233  6888999999987665521         111


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      .    .++.++++|. .++..++.-.     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .
T Consensus        86 ~----~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik-----p~Nil~~~-~  150 (295)
T 3ugc_A           86 R----NLKLIMEYLPYGSLRDYLQKH-----KERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA-----TRNILVEN-E  150 (295)
T ss_dssp             T----SCEEEEECCTTCBHHHHHHHC-----GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEEE-T
T ss_pred             C----ceEEEEEeCCCCCHHHHHHhc-----ccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCC-----HhhEEEcC-C
Confidence            1    2678999996 4776666422     2237888899999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCC-----CCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHE-----NEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~-----~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++....     .......+|..|+||
T Consensus       151 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  186 (295)
T 3ugc_A          151 NRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAP  186 (295)
T ss_dssp             TEEEECCCCSCC-------------CTTCGGGGCCH
T ss_pred             CeEEEccCcccccccCCcceeeeccCCCCccceeCc
Confidence            8999999999874321     112334566778887

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=98.95  E-value=5.8e-11  Score=116.76  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||++..+.|           . ++    .++.+++++.. ++..++...     +...+...+..++.|++.
T Consensus        69 ~l~~l~h~~iv~~~~~~-----------~-~~----~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~  127 (281)
T 1mp8_A           69 TMRQFDHPHIVKLIGVI-----------T-EN----PVWIIMELCTLGELRSFLQVR-----KYSLDLASLILYAYQLST  127 (281)
T ss_dssp             HHHTCCCTTBCCEEEEE-----------C-SS----SCEEEEECCTTEEHHHHHHHT-----TTTSCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCccceEEEEE-----------c-cC----ccEEEEecCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHH
Confidence            57888999999765543           1 11    26789999975 666665422     234788899999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....   ......+|..|+||
T Consensus       128 ~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  186 (281)
T 1mp8_A          128 ALAYLESKRFVHRDIA-----ARNVLVSS-NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP  186 (281)
T ss_dssp             HHHHHHHTTCCCSCCS-----GGGEEEEE-TTEEEECC-------------------CCGGGCCH
T ss_pred             HHHHHHhCCeeccccc-----HHHEEECC-CCCEEECccccccccCcccccccccCCCcccccCh
Confidence            9999 99999999999     99999975 489999999998743221   12234556678887

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=98.94  E-value=1e-10  Score=114.48  Aligned_cols=160  Identities=14%  Similarity=0.095  Sum_probs=107.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhh-hhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDF-VDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F-~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+....  .   ...+|  +++.++||||+.....|......-... ........
T Consensus        25 g~V~~~~~~~~~~-------~vavK~~~~~~--~---~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (284)
T 2a19_B           25 GQVFKAKHRIDGK-------TYVIKRVKYNN--E---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKT   92 (284)
T ss_dssp             CCEEEEEETTTCC-------EEEEEEEECCS--G---GGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEE
T ss_pred             eEEEEEEEcCCCe-------EEEEEEecccc--H---HHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCc
Confidence            5677777777776       88888875321  1   11233  688899999997665441100000000 00000011


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..++.++|++.. ++..++.-.    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        93 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~k  162 (284)
T 2a19_B           93 KCLFIQMEFCDKGTLEQWIEKR----RGEKLDKVLALELFEQITKGVDYIHSKKLINRDLK-----PSNIFLVD-TKQVK  162 (284)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHG----GGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEEE-TTEEE
T ss_pred             ceEEEEEeccCCCCHHHHHhhc----cCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCC-----HHHEEEcC-CCCEE
Confidence            236788999985 777776532    12357888899999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.. .........+|..|+||
T Consensus       163 l~Dfg~~~~~~~~~~~~~~~~~~~y~aP  190 (284)
T 2a19_B          163 IGDFGLVTSLKNDGKRTRSKGTLRYMSP  190 (284)
T ss_dssp             ECCCTTCEESSCCSCCCCCCSCCTTSCH
T ss_pred             ECcchhheeccccccccccCCcccccCh
Confidence            9999998733 22334566789999988

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=98.94  E-value=7.8e-11  Score=116.58  Aligned_cols=115  Identities=20%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||++..+.++          +.++    ..+.+++++.. ++..+++-     .....+...+..++.|++.
T Consensus        79 ~l~~l~h~~iv~~~~~~~----------~~~~----~~~~v~e~~~~~~L~~~l~~-----~~~~~~~~~~~~i~~ql~~  139 (298)
T 3f66_A           79 IMKDFSHPNVLSLLGICL----------RSEG----SPLVVLPYMKHGDLRNFIRN-----ETHNPTVKDLIGFGLQVAK  139 (298)
T ss_dssp             HHHTCCCTTBCCCCEEEC----------CSSS----CCEEEEECCTTCBHHHHHHC-----TTCCCCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCEeeeeeEEE----------cCCC----ceEEEEeCCCCCCHHHHHHh-----cccCCCHHHHHHHHHHHHH
Confidence            688899999998766541          2221    25688999985 76666632     2334678889999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC------CCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE------NEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~------~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....      ...+...+|..|+||
T Consensus       140 ~l~~lH~~~i~H~dik-----p~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (298)
T 3f66_A          140 GMKYLASKKFVHRDLA-----ARNCMLDE-KFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMAL  201 (298)
T ss_dssp             HHHHHHHTTCCCSCCS-----GGGEEECT-TCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCH
T ss_pred             HHHHHHhCCccCCCCc-----hheEEECC-CCCEEECcccccccccccchhccccccCCCCCccccCh
Confidence            9999 99999999999     99999975 48999999999873211      123455677789887

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=98.94  E-value=5.5e-11  Score=117.27  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=100.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhh---HHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWIL---AKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l---~~alk~F~~~~~~  405 (512)
                      +.|+++.+..+|.       .+|+|.+....  .....-.+|  +++.++||||++..+.|..-   ...+..+     .
T Consensus        20 g~V~~~~~~~~~~-------~vaiK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~-----~   85 (303)
T 1zy4_A           20 GQVVKARNALDSR-------YYAIKKIRHTE--EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV-----K   85 (303)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEEEH--HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----------
T ss_pred             EEEEEEEEcCCCe-------EEEEEEEeccH--HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc-----c
Confidence            6677888777777       88888874321  011111233  68888999999765544100   0000000     1


Q ss_pred             CCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      ..-.++.++|++. .++..++.-.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlk-----p~Nil~~~-~~~  154 (303)
T 1zy4_A           86 KKSTLFIQMEYCENGTLYDLIHSE-----NLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLK-----PMNIFIDE-SRN  154 (303)
T ss_dssp             CEEEEEEEEECCCSCBHHHHHHHS-----CGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSC
T ss_pred             cCCceEEEEecCCCCCHHHhhhcc-----ccccchHHHHHHHHHHHHHHHHHHhCCeecccCC-----HHhEEEcC-CCC
Confidence            1123788999997 4777776422     2235667888999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCCC----------------CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH----------------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~----------------~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...                .......++|..|+||
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  199 (303)
T 1zy4_A          155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVAT  199 (303)
T ss_dssp             EEECCCCCCSCTTC-------------------------CTTSCH
T ss_pred             EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCc
Confidence            9999999987321                1234567899999998

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=98.94  E-value=6e-11  Score=119.41  Aligned_cols=156  Identities=13%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|..+     .+|+|.+...........-.+|  ++..+ +||||++..+.|           ...+   
T Consensus        39 g~Vy~~~~~~~~~~~-----~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~-----------~~~~---   99 (327)
T 1fvr_A           39 GQVLKARIKKDGLRM-----DAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC-----------EHRG---   99 (327)
T ss_dssp             CEEEEEEEEETTEEE-----EEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEE-----------EETT---
T ss_pred             ceEEEEEEccCCccc-----ceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceee-----------eeCC---
Confidence            567777776666511     3478877643332232222344  67777 899999776655           1211   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                       .++.++|++. .++..++.-....          ......+...+..++.|++.++.+ |..+|+|+|||     |+||
T Consensus       100 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-----p~NI  173 (327)
T 1fvr_A          100 -YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA-----ARNI  173 (327)
T ss_dssp             -EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGE
T ss_pred             -ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc-----cceE
Confidence             2788999996 4787777543321          112357888999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCC-CCCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSH-ENEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~-~~~~t~yv~tr~YraP  512 (512)
                      ++.. .+.+|++|||+++... ........++..|+||
T Consensus       174 l~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aP  210 (327)
T 1fvr_A          174 LVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAI  210 (327)
T ss_dssp             EECG-GGCEEECCTTCEESSCEECCC----CCTTTCCH
T ss_pred             EEcC-CCeEEEcccCcCccccccccccCCCCCccccCh
Confidence            9975 4789999999987332 1122334556678877

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=98.94  E-value=1.4e-10  Score=113.11  Aligned_cols=135  Identities=19%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             HhHHHHhhhhcCCC--CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHH
Q psy17422        351 EEAMKAVNFALIPT--TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRY  424 (512)
Q Consensus       351 ~eAik~v~~~~~~~--~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~y  424 (512)
                      .+|+|.+.......  ..... .+|  +++.++||||++..+.|.           ..+    .++.++|++.. ++..+
T Consensus        32 ~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~----~~~lv~e~~~~~~L~~~   96 (271)
T 3dtc_A           32 EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----------KEP----NLCLVMEFARGGPLNRV   96 (271)
T ss_dssp             EEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------CC------CEEEEECCTTEEHHHH
T ss_pred             eEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----------cCC----ceEEEEEcCCCCCHHHH
Confidence            67888765432211  11122 233  688899999997766551           111    26789999974 44433


Q ss_pred             HHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC---CChHHHHhhccccccccccC-------CCCeEEEecCCCCC
Q psy17422        425 IALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA---ITEAQVKLFCRNASFIHVNE-------SKLVLKLCDFGSAS  493 (512)
Q Consensus       425 v~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~---I~hrdIK~Fc~n~~nIll~~-------~~~~~Kl~DfGlar  493 (512)
                      +      + +...+...+..++.|++.++.+ |..+   |+|+|||     |+||++..       ..+.+|++|||+++
T Consensus        97 ~------~-~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dik-----p~Nil~~~~~~~~~~~~~~~kl~Dfg~~~  164 (271)
T 3dtc_A           97 L------S-GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK-----SSNILILQKVENGDLSNKILKITDFGLAR  164 (271)
T ss_dssp             H------T-SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCS-----GGGEEESSCCSSSCCSSCCEEECCCCC--
T ss_pred             h------h-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCc-----hHHEEEecccccccccCcceEEccCCccc
Confidence            3      2 2357888999999999999999 9988   8999999     99999975       25779999999998


Q ss_pred             CCCCCCccCeeeeeeeccC
Q psy17422        494 WSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~~~~~~~t~yv~tr~YraP  512 (512)
                      ...........+|..|+||
T Consensus       165 ~~~~~~~~~~~~~~~y~aP  183 (271)
T 3dtc_A          165 EWHRTTKMSAAGAYAWMAP  183 (271)
T ss_dssp             -----------CCGGGSCH
T ss_pred             ccccccccCCCCccceeCH
Confidence            5433334456889999998

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=98.94  E-value=6.2e-11  Score=117.90  Aligned_cols=141  Identities=15%  Similarity=0.083  Sum_probs=96.2

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+...........-.+|  ++..+ +||||++..+.|.           ..    -.++.++|++.. ++..++.
T Consensus        55 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~l~  119 (313)
T 1t46_A           55 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT-----------IG----GPTLVITEYCCYGDLLNFLR  119 (313)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------SS----SSCEEEEECCTTEEHHHHHH
T ss_pred             hhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe-----------cC----CCcEEEEecCCCCCHHHHHH
Confidence            7888887542110000011233  56777 8999997766551           11    136789999975 7777765


Q ss_pred             hHHhh------------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        427 LQQLY------------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       427 L~~iy------------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      -..-.            ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl~Dfg~~~  193 (313)
T 1t46_A          120 RKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLA-----ARNILLTH-GRITKICDFGLAR  193 (313)
T ss_dssp             HTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEET-TTEEEECCCGGGS
T ss_pred             hcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCc-----cceEEEcC-CCCEEEccccccc
Confidence            32210            111247888999999999999999 99999999999     99999975 4899999999987


Q ss_pred             CCCCC----CccCeeeeeeeccC
Q psy17422        494 WSHEN----EITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~~~~~----~~t~yv~tr~YraP  512 (512)
                      .....    ......+|..|+||
T Consensus       194 ~~~~~~~~~~~~~~~~~~~y~aP  216 (313)
T 1t46_A          194 DIKNDSNYVVKGNARLPVKWMAP  216 (313)
T ss_dssp             CTTSCTTSEECSSSEECGGGCCH
T ss_pred             cccccccceeccCCCCcceeeCh
Confidence            43211    12345677889988

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=98.94  E-value=5.2e-11  Score=117.76  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+...........-.+|  ++..++||||++..+.|.           ..+    
T Consensus        29 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~----   86 (303)
T 2vwi_A           29 AVVQAAYCAPKKE-------KVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFV-----------VKD----   86 (303)
T ss_dssp             CCEEEEEC----C-------EEEEECCC----------------CCCCCCCTTBCCEEEEEE-----------SSS----
T ss_pred             eEEEEEEECCCCc-------EEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEe-----------ecC----
Confidence            4566666666666       7888887543222222222344  467788999997665551           111    


Q ss_pred             ceeEEecccc-CChHHHHHhHHhh--hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLY--RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy--~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                      .++.+++++. .++..++.-...-  ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~-----p~Nil~~~-~~~~  160 (303)
T 2vwi_A           87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVK-----AGNILLGE-DGSV  160 (303)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----GGGEEECT-TCCE
T ss_pred             CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-----hhhEEEcC-CCCE
Confidence            2788999996 5777776532111  112347888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC-------CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-------~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..       .......+++|+.|+||
T Consensus       161 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (303)
T 2vwi_A          161 QIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAP  195 (303)
T ss_dssp             EECCCHHHHHCC---------------CCCTTCCH
T ss_pred             EEEeccchheeccCCCccchhhhcccCCCccccCH
Confidence            99999987521       11223456889999998

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=98.93  E-value=6.3e-11  Score=116.52  Aligned_cols=147  Identities=16%  Similarity=0.115  Sum_probs=103.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..++.       .+|+|.+...   ..-... .+|  +++.++||||+...+.|           ...    
T Consensus        27 g~V~~~~~~~~~~-------~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~----   81 (288)
T 3kfa_A           27 GEVYEGVWKKYSL-------TVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVC-----------TRE----   81 (288)
T ss_dssp             CSEEEEEEGGGTE-------EEEEEEECSC---STHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----
T ss_pred             eeEEEeEecCCCE-------EEEEEecCcC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------ccC----
Confidence            4566666666665       6888876531   111112 334  68889999999766554           111    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+++++. .++..++.-.    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus        82 ~~~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dik-----p~Nil~~~-~~~~~  151 (288)
T 3kfa_A           82 PPFYIITEFMTYGNLLDYLREC----NRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA-----ARNCLVGE-NHLVK  151 (288)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHC----CTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCS-----GGGEEECG-GGCEE
T ss_pred             CCEEEEEEcCCCCcHHHHHHhc----ccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCC-----cceEEEcC-CCCEE
Confidence            13788999998 5666665321    12347788899999999999999 99999999999     99999975 47899


Q ss_pred             EecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....   .......+|..|+||
T Consensus       152 l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  181 (288)
T 3kfa_A          152 VADFGLSRLMTGDTYTAHAGAKFPIKWTAP  181 (288)
T ss_dssp             ECCCCGGGTSCSSSSEEETTEEECGGGCCH
T ss_pred             EccCccceeccCCccccccCCccccCcCCh
Confidence            999999874322   223445667789887

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=98.93  E-value=8e-11  Score=116.79  Aligned_cols=152  Identities=13%  Similarity=0.084  Sum_probs=107.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC--CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI--PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~--~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+..+|.       .+|+|.+.....  ....... .+|  +++.++|+||++..+.|+          ..+  
T Consensus        19 g~V~~~~~~~~~~-------~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----------~~~--   79 (305)
T 2wtk_C           19 GKVKEVLDSETLC-------RRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLY----------NEE--   79 (305)
T ss_dssp             CEEEEEEBTTTCC-------EEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE----------CC---
T ss_pred             eEEEEEEECCCCc-------EEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEE----------cCC--
Confidence            6678888887777       788887754321  0111112 233  688899999997766552          111  


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                       .-.++.++++|..++..++...    .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+
T Consensus        80 -~~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlk-----p~NIl~~~-~~~~  148 (305)
T 2wtk_C           80 -KQKMYMVMEYCVCGMQEMLDSV----PEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIK-----PGNLLLTT-GGTL  148 (305)
T ss_dssp             ---CEEEEEECCSEEHHHHHHHS----TTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCE
T ss_pred             -CCeEEEEehhccCCHHHHHHhC----cccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----cccEEEcC-CCcE
Confidence             1137889999987765554321    13357888999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++..    .........+|..|+||
T Consensus       149 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  180 (305)
T 2wtk_C          149 KISALGVAEALHPFAADDTCRTSQGSPAFQPP  180 (305)
T ss_dssp             EECCCTTCEECCTTCSSCEECCCCSCGGGCCH
T ss_pred             EeeccccccccCccccccccccCCCCCCCcCh
Confidence            99999998632    12233456789999987

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.93  E-value=6e-11  Score=118.30  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+..............+   +++.++||||+...+.|.           ..+   
T Consensus        39 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----------~~~---   97 (318)
T 2dyl_A           39 GQVWKMRFRKTGH-------VIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----------TNT---   97 (318)
T ss_dssp             -CEEEEEETTTCC-------EEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----------CSS---
T ss_pred             eeEEEEEEecCCe-------EEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----------cCC---
Confidence            5677777777777       8899887543211111111222   577789999997766551           111   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+++++......+..     ......+...+..++.|++.++.+ |.. +|+|+|||     |+||++.. .+.+|
T Consensus        98 -~~~lv~e~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlk-----p~Nil~~~-~~~~k  165 (318)
T 2dyl_A           98 -DVFIAMELMGTCAEKLKK-----RMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVK-----PSNILLDE-RGQIK  165 (318)
T ss_dssp             -EEEEEECCCSEEHHHHHH-----HHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----GGGEEECT-TSCEE
T ss_pred             -cEEEEEeccCCcHHHHHH-----HhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCC-----HHHEEECC-CCCEE
Confidence             378899999544333322     113457888999999999999999 985 99999999     99999975 48899


Q ss_pred             EecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.. .........+|..|+||
T Consensus       166 l~dfg~~~~~~~~~~~~~~~~~~~y~aP  193 (318)
T 2dyl_A          166 LCDFGISGRLVDDKAKDRSAGCAAYMAP  193 (318)
T ss_dssp             ECCCTTC--------------CCTTCCH
T ss_pred             EEECCCchhccCCccccccCCCccccCh
Confidence            9999998743 22334456789999987

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.93  E-value=4.8e-11  Score=116.47  Aligned_cols=133  Identities=13%  Similarity=0.152  Sum_probs=94.5

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+.....   -... .+|  ++..++||||++..+.|           ...    -+++.++|++.. ++..++.
T Consensus        36 ~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~   97 (269)
T 4hcu_A           36 KVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVC-----------LEQ----APICLVFEFMEHGCLSDYLR   97 (269)
T ss_dssp             EEEEEEECTTSB---CHHHHHHHHHHHHTCCCTTBCCEEEEE-----------CSS----SSEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEeccccc---CHHHHHHHHHHHHhCCCCCEeeEEEEE-----------ecC----CceEEEEEeCCCCcHHHHHH
Confidence            578887754321   1122 344  68889999999766655           111    137899999974 5655553


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC---CCccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE---NEITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~---~~~t~  502 (512)
                      -     .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....   .....
T Consensus        98 ~-----~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dik-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~  166 (269)
T 4hcu_A           98 T-----QRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA-----ARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTG  166 (269)
T ss_dssp             T-----TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECG-GGCEEECCTTGGGGBCCHHHHSTTS
T ss_pred             h-----cCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcc-----hheEEEcC-CCCEEeccccccccccccccccccC
Confidence            2     22347888999999999999999 99999999999     99999965 48899999999873221   11233


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       167 ~~~~~~y~aP  176 (269)
T 4hcu_A          167 TKFPVKWASP  176 (269)
T ss_dssp             TTCCGGGCCH
T ss_pred             cccccccCCH
Confidence            4456778887

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=98.93  E-value=7.6e-11  Score=118.71  Aligned_cols=159  Identities=13%  Similarity=0.068  Sum_probs=104.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|..  .....+|+|.+...........-.+|  ++..+ +||||++..+.|           ...    
T Consensus        60 g~Vy~~~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~-----------~~~----  122 (333)
T 2i1m_A           60 GKVVEATAFGLGKE--DAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC-----------THG----  122 (333)
T ss_dssp             EEEEEEEETTCSSS--CCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----
T ss_pred             cceEEEEecCCCcc--cchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE-----------ecC----
Confidence            55666666555541  11124677765432110011111233  57777 899999776655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhh--------ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRD--------QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~--------ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                      -+++.++|++.. ++..++.-......        ....+...+..++.|++.++.+ |..+|+|+|||     |+||++
T Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-----p~NIl~  197 (333)
T 2i1m_A          123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVA-----ARNVLL  197 (333)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGCEE
T ss_pred             CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcc-----cceEEE
Confidence            137889999975 88777764332211        2236788899999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCCCC-CC---CccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASWSH-EN---EITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~~~-~~---~~t~yv~tr~YraP  512 (512)
                      .. .+.+|++|||+++... ..   ......+|..|+||
T Consensus       198 ~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  235 (333)
T 2i1m_A          198 TN-GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAP  235 (333)
T ss_dssp             EG-GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCH
T ss_pred             CC-CCeEEECccccccccccccceeecCCCCCCccccCH
Confidence            75 4899999999987321 11   12345677889987

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=98.92  E-value=4.4e-11  Score=117.73  Aligned_cols=152  Identities=13%  Similarity=-0.013  Sum_probs=104.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.........+|+|.+.....  ..... .+|  ++..++||||+...+.|.           ..+   
T Consensus        22 g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~~---   85 (289)
T 4fvq_A           22 TKIFKGVRREVGDYGQLHETEVLLKVLDKAHR--NYSESFFEAASMMSKLSHKHLVLNYGVCV-----------CGD---   85 (289)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEEEEEEECGGGG--GGHHHHHHHHHHHHTSCCTTBCCEEEEEC-----------CTT---
T ss_pred             ceEEEEEEecccccccccchhhhhhhcccccH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEE-----------eCC---
Confidence            56777777776642222333577777643221  11122 333  688899999997666551           111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe--
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV--  483 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~--  483 (512)
                       ..+.++|++. .++..++.-.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++... +.  
T Consensus        86 -~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----p~NIll~~~-~~~~  153 (289)
T 4fvq_A           86 -ENILVQEFVKFGSLDTYLKKN-----KNCINILWKLEVAKQLAAAMHFLEENTLIHGNVC-----AKNILLIRE-EDRK  153 (289)
T ss_dssp             -CCEEEEECCTTCBHHHHHHHT-----GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEEEEC-CBGG
T ss_pred             -CCEEEEECCCCCCHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcC-----cceEEEecC-Cccc
Confidence             2678999997 5777776532     2237888899999999999999 99999999999     999999754 33  


Q ss_pred             ------EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 ------LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ------~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                            +|++|||+++.....  ....+|..|+||
T Consensus       154 ~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aP  186 (289)
T 4fvq_A          154 TGNPPFIKLSDPGISITVLPK--DILQERIPWVPP  186 (289)
T ss_dssp             GTBCCEEEECCCCSCTTTSCH--HHHHHTTTTSCH
T ss_pred             ccccceeeeccCcccccccCc--cccCCcCcccCH
Confidence                  999999998743221  224566778887

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=98.92  E-value=3.8e-11  Score=121.61  Aligned_cols=119  Identities=16%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHhHHhhhh--ccCCChHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIALQQLYRD--QAGRDADVIYRRAQQL  449 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~--ka~~d~~~v~~~~~ql  449 (512)
                      ++..++||||+...+.|.           ..    -.++.++|+|.. ++..+++-......  ....+...+..++.|+
T Consensus        96 ~l~~l~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi  160 (348)
T 2pml_X           96 IITDIKNEYCLTCEGIIT-----------NY----DEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSV  160 (348)
T ss_dssp             HHTTCCCTTBCCCSEEEE-----------SS----SEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHH
T ss_pred             HHHhCCCCCcceEEEEEe-----------eC----CeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHH
Confidence            688899999998776652           11    137889999985 65555221111222  3457888999999999


Q ss_pred             HHHhCC-CC-CCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        450 LHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       450 L~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +.++.+ |. .+|+|+|||     |+||++.. .+.+|++|||+++...........+|..|+||
T Consensus       161 ~~~l~~lH~~~~i~H~dl~-----p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aP  219 (348)
T 2pml_X          161 LNSFSYIHNEKNICHRDVK-----PSNILMDK-NGRVKLSDFGESEYMVDKKIKGSRGTYEFMPP  219 (348)
T ss_dssp             HHHHHHHHHTSCEECCCCC-----GGGEEECT-TSCEEECCCTTCEECBTTEECSSCSCGGGCCG
T ss_pred             HHHHHHHhccCCEeecCCC-----hHhEEEcC-CCcEEEeccccccccccccccCCCCCcCccCc
Confidence            999999 98 999999999     99999975 48899999999875433345667889999998

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=98.92  E-value=5e-11  Score=118.75  Aligned_cols=142  Identities=16%  Similarity=0.075  Sum_probs=94.9

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+...........-.+|  ++..+ +||||+...+.|.          ..    .-+++.+++++.. ++..++.
T Consensus        59 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~----------~~----~~~~~lv~e~~~~~~L~~~l~  124 (316)
T 2xir_A           59 TVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT----------KP----GGPLMVIVEFCKFGNLSTYLR  124 (316)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----------CT----TSCCEEEEECCTTEEHHHHHH
T ss_pred             EEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEe----------cC----CCceEEEEEcCCCCcHHHHHH
Confidence            7888877543211100011233  46666 6899997666541          11    1237788999974 6666664


Q ss_pred             hHHhhh----------hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC
Q psy17422        427 LQQLYR----------DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS  495 (512)
Q Consensus       427 L~~iy~----------~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~  495 (512)
                      -...-.          .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dik-----p~Nil~~~-~~~~kl~Dfg~~~~~  198 (316)
T 2xir_A          125 SKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA-----ARNILLSE-KNVVKICDFGLARDI  198 (316)
T ss_dssp             TCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEECCCGGGSCT
T ss_pred             hcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCc-----cceEEECC-CCCEEECCCcccccc
Confidence            321100          01115778899999999999999 99999999999     99999975 488999999998742


Q ss_pred             CC----CCccCeeeeeeeccC
Q psy17422        496 HE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       496 ~~----~~~t~yv~tr~YraP  512 (512)
                      ..    .......+|..|+||
T Consensus       199 ~~~~~~~~~~~~~~t~~y~aP  219 (316)
T 2xir_A          199 YKDPDYVRKGDARLPLKWMAP  219 (316)
T ss_dssp             TTCTTSEEETTEEECGGGCCH
T ss_pred             ccCccceeccCCCcceeecCc
Confidence            21    123456788899998

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=98.91  E-value=8.3e-11  Score=115.53  Aligned_cols=133  Identities=12%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.....   -... .+|  ++..++|+||++..+.|           ...    -.++.+++++. .++..++.
T Consensus        50 ~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~  111 (283)
T 3gen_A           50 DVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC-----------TKQ----RPIFIITEYMANGCLLNYLR  111 (283)
T ss_dssp             EEEEEEECTTSB---CHHHHHHHHHHHHTCCCTTBCCEEEEE-----------CSS----SSEEEEECCCTTCBHHHHHH
T ss_pred             eEEEEEecCCCC---CHHHHHHHHHHHhcCCCCCEeeEEEEE-----------ecC----CCeEEEEeccCCCcHHHHHH
Confidence            678887754221   1122 344  68889999999766554           111    13789999996 56666653


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---CccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t~  502 (512)
                      -     .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....   ....
T Consensus       112 ~-----~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik-----p~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~  180 (283)
T 3gen_A          112 E-----MRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA-----ARNCLVND-QGVVKVSDFGLSRYVLDDEYTSSVG  180 (283)
T ss_dssp             C-----GGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCS-----GGGEEECT-TSCEEECSTTGGGGBCCHHHHSTTS
T ss_pred             H-----hccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCc-----cceEEEcC-CCCEEEccccccccccccccccccC
Confidence            2     13357888999999999999999 99999999999     99999975 488999999998732211   1223


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       181 ~~~~~~y~aP  190 (283)
T 3gen_A          181 SKFPVRWSPP  190 (283)
T ss_dssp             TTSCGGGCCH
T ss_pred             CccCcccCCH
Confidence            3456678887

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.91  E-value=4.6e-11  Score=120.12  Aligned_cols=145  Identities=16%  Similarity=0.033  Sum_probs=98.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHH--HHHHhh--CCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSV--ASILND--NACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~--~ell~~--~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++  |.       .+|+|.+....    .....  .+++..  ++|+||++....+.          . ....
T Consensus        51 g~V~~~~~~--~~-------~vavK~~~~~~----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~----------~-~~~~  106 (337)
T 3mdy_A           51 GEVWMGKWR--GE-------KVAVKVFFTTE----EASWFRETEIYQTVLMRHENILGFIAADI----------K-GTGS  106 (337)
T ss_dssp             EEEEEEEET--TE-------EEEEEEEEGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEE----------E-SCGG
T ss_pred             eEEEEEEEC--Cc-------eEEEEEEeccc----cchhhhHHHHHHHHhhcCCCeeeEEEEEc----------c-CCCC
Confidence            556666543  44       78888764321    11112  234443  48999997655441          1 1011


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC--------CCChHHHHhhcccccccc
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS--------AITEAQVKLFCRNASFIH  476 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~--------~I~hrdIK~Fc~n~~nIl  476 (512)
                      ...++.++++|.. ++..+++       +...+...+..++.|++.++.+ |..        +|+|+|||     |+||+
T Consensus       107 ~~~~~lv~e~~~~g~L~~~l~-------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dik-----p~Nil  174 (337)
T 3mdy_A          107 WTQLYLITDYHENGSLYDYLK-------STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLK-----SKNIL  174 (337)
T ss_dssp             GCEEEEEECCCTTCBHHHHHH-------HCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCC-----GGGEE
T ss_pred             CCceEEEEeccCCCcHHHHhh-------ccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccc-----hHHEE
Confidence            1237889999975 7777663       1247888999999999999999 988        99999999     99999


Q ss_pred             ccCCCCeEEEecCCCCCCCCC------CCccCeeeeeeeccC
Q psy17422        477 VNESKLVLKLCDFGSASWSHE------NEITPYLVSRFYRAP  512 (512)
Q Consensus       477 l~~~~~~~Kl~DfGlar~~~~------~~~t~yv~tr~YraP  512 (512)
                      +.. .+.+|++|||+++....      ......++|..|+||
T Consensus       175 l~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aP  215 (337)
T 3mdy_A          175 VKK-NGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPP  215 (337)
T ss_dssp             ECT-TSCEEECCCTTCEECC---------CCSSCSCGGGCCH
T ss_pred             ECC-CCCEEEEeCCCceeeccccccccCCCCCCccCcceeCh
Confidence            975 48899999999863211      112356899999998

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=98.91  E-value=1.9e-10  Score=126.58  Aligned_cols=150  Identities=9%  Similarity=0.045  Sum_probs=100.8

Q ss_pred             hccccCCCCCCC------cChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        336 IRKDENGIPLSE------ENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       336 ~~~~~~~~~~~~------~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +..+..|..|..      ++..+|+|.+...........-.+|  +|..++||||++....+           ..  .  
T Consensus       344 LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~-----------~~--~--  408 (613)
T 2ozo_A          344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-----------QA--E--  408 (613)
T ss_dssp             EEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ES--S--
T ss_pred             EecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEe-----------cc--C--
Confidence            455555555432      2346899988654222222122444  78889999999776654           11  1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       +++.++++|.. ++..++.     ......+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.+|
T Consensus       409 -~~~lv~E~~~~g~L~~~l~-----~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlk-----p~NILl~~-~~~vk  476 (613)
T 2ozo_A          409 -ALMLVMEMAGGGPLHKFLV-----GKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLA-----ARNVLLVN-RHYAK  476 (613)
T ss_dssp             -SEEEEEECCTTCBHHHHHT-----TCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEEE-TTEEE
T ss_pred             -CeEEEEEeCCCCcHHHHHh-----hccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCC-----HHHEEEcC-CCcEE
Confidence             27899999975 5655553     123347888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCC--CCCc---cCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH--ENEI---TPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~--~~~~---t~yv~tr~YraP  512 (512)
                      ++|||+++...  ....   ..-.+|..|+||
T Consensus       477 L~DFGla~~~~~~~~~~~~~~~~~~~~~y~AP  508 (613)
T 2ozo_A          477 ISDFGLSKALGADDSYYTARSAGKWPLKWYAP  508 (613)
T ss_dssp             ECCCSTTTTCC--------------CCTTSCH
T ss_pred             EeeccCcccccCCCceeeeccCCCCccceeCH
Confidence            99999998432  1111   122334678887

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=98.91  E-value=6.5e-11  Score=118.88  Aligned_cols=136  Identities=17%  Similarity=0.111  Sum_probs=94.8

Q ss_pred             hHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      ..+|+|.+....... .... .+|  +++.++||||+...+.|.           .  .+...++.+++++.. ++..++
T Consensus        61 ~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~--~~~~~~~lv~e~~~~~~L~~~l  126 (318)
T 3lxp_A           61 EMVAVKALKADAGPQ-HRSGWKQEIDILRTLYHEHIIKYKGCCE-----------D--AGAASLQLVMEYVPLGSLRDYL  126 (318)
T ss_dssp             EEEEEEEECTTCCHH-HHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------E--TTTTEEEEEECCCTTCBHHHHG
T ss_pred             cEEEEEEeccccChH-HHHHHHHHHHHHHhCCCcchhhEEEEEe-----------c--CCCceEEEEEecccCCcHHHHH
Confidence            378999876431110 0111 233  688899999997666552           1  112247889999975 555554


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC-----CC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE-----NE  499 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~-----~~  499 (512)
                      .      . ...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....     ..
T Consensus       127 ~------~-~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dik-----p~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~  193 (318)
T 3lxp_A          127 P------R-HSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLA-----ARNVLLDN-DRLVKIGDFGLAKAVPEGHEYYRV  193 (318)
T ss_dssp             G------G-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCEEECCGGGCEECCTTCSEEEC
T ss_pred             h------h-CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc-----hheEEEcC-CCCEEECCcccccccccccccccc
Confidence            2      2 237888999999999999999 99999999999     99999975 48899999999873221     11


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....+|..|+||
T Consensus       194 ~~~~~~~~~y~aP  206 (318)
T 3lxp_A          194 REDGDSPVFWYAP  206 (318)
T ss_dssp             ---CCCCGGGCCH
T ss_pred             ccCCCCCceeeCh
Confidence            2345677788887

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.91  E-value=1.6e-10  Score=115.79  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCC-C
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEG-N  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~-~  405 (512)
                      +.|+++.+..+|.       .+|+|.+....  .. ... .+|  ++..+ +||||+...+.|.          .... .
T Consensus        38 g~Vy~~~~~~~~~-------~vaiK~~~~~~--~~-~~~~~~e~~~l~~l~~h~~i~~~~~~~~----------~~~~~~   97 (326)
T 2x7f_A           38 GQVYKGRHVKTGQ-------LAAIKVMDVTG--DE-EEEIKQEINMLKKYSHHRNIATYYGAFI----------KKNPPG   97 (326)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECCS--ST-THHHHHHHHHHHHHCCSTTBCCEEEEEE----------ECC--C
T ss_pred             EEEEEEEECCCCC-------eEEEEEEecCc--cc-HHHHHHHHHHHHhccCCCCeeeeeeEEe----------eccCcc
Confidence            5677777777776       78888875321  11 122 333  45555 7999997766552          1100 0


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      ..-.++.++|++.. ++..++.-.    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk-----p~NIl~~~-~~~  167 (326)
T 2x7f_A           98 MDDQLWLVMEFCGAGSVTDLIKNT----KGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIK-----GQNVLLTE-NAE  167 (326)
T ss_dssp             CCCEEEEEEECCTTEEHHHHHHHS----GGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----GGGEEECT-TCC
T ss_pred             ccceEEEEEEcCCCCcHHHHHHhc----ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc-----HHHEEEcC-CCC
Confidence            01237889999975 776666432    12357888899999999999999 99999999999     99999975 488


Q ss_pred             EEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++...  ......+++|..|+||
T Consensus       168 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  198 (326)
T 2x7f_A          168 VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAP  198 (326)
T ss_dssp             EEECCCTTTC-------------CCGGGCCH
T ss_pred             EEEeeCcCceecCcCccccccccCCccccCh
Confidence            9999999987432  2234466889999998

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=98.90  E-value=7.7e-11  Score=119.14  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC---CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI---PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~---~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      +.|+++.++.++.       .+|+|.+.....   ....... .+|  +++.++||||++..+.|           ... 
T Consensus        40 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----------~~~-  100 (345)
T 3hko_A           40 GVVRVAIENQTRA-------IRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVY-----------EDE-  100 (345)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECS-
T ss_pred             eEEEEEEECCCCc-------eEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhh-----------ccC-
Confidence            6778888877777       889887654321   1111122 334  68889999999776655           111 


Q ss_pred             CCCcceeEEecccc-CChHHHHHhHHh--------------------------------hhh--ccCCChHHHHHHHHHH
Q psy17422        405 NGNLPLRGSLPDMT-ADTTRYIALQQL--------------------------------YRD--QAGRDADVIYRRAQQL  449 (512)
Q Consensus       405 ~~~lPl~~~lpdm~-~d~~~yv~L~~i--------------------------------y~~--ka~~d~~~v~~~~~ql  449 (512)
                         -.++.++|+|. .++..++.....                                ++.  ....+...+..++.|+
T Consensus       101 ---~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  177 (345)
T 3hko_A          101 ---QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI  177 (345)
T ss_dssp             ---SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred             ---CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence               13788999996 465555421000                                000  0012456788899999


Q ss_pred             HHHhCC-CCCCCChHHHHhhccccccccccCCC-CeEEEecCCCCCCC---C---CCCccCeeeeeeeccC
Q psy17422        450 LHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK-LVLKLCDFGSASWS---H---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       450 L~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~-~~~Kl~DfGlar~~---~---~~~~t~yv~tr~YraP  512 (512)
                      +.++.+ |..+|+|+|||     |+||++.... ..+|++|||+++..   .   .......++|+.|+||
T Consensus       178 ~~~l~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aP  243 (345)
T 3hko_A          178 FSALHYLHNQGICHRDIK-----PENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAP  243 (345)
T ss_dssp             HHHHHHHHHTTEECCCCC-----GGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCH
T ss_pred             HHHHHHHHHCCccccCCC-----hhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCc
Confidence            999999 99999999999     9999997542 27999999998721   1   1124567899999998

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=98.90  E-value=1.8e-10  Score=113.69  Aligned_cols=137  Identities=15%  Similarity=0.108  Sum_probs=93.6

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  +++.++||||+...+.|.          ..+ .  . .+.+++++. .++..++.-
T Consensus        51 ~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~-~--~-~~~v~e~~~~~~L~~~~~~  116 (298)
T 3pls_A           51 QCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIML----------PPE-G--L-PHVLLPYMCHGDLLQFIRS  116 (298)
T ss_dssp             EEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEC----------CSS-S--C-CEEEECCCTTCBHHHHHHC
T ss_pred             eeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEe----------cCC-C--C-cEEEEecccCCCHHHHHhc
Confidence            4677776542111111111233  688899999998776551          111 1  1 357888885 566665532


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC------CCCc
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH------ENEI  500 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~------~~~~  500 (512)
                           .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++...      ....
T Consensus       117 -----~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dik-----p~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~  185 (298)
T 3pls_A          117 -----PQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLA-----ARNCMLDE-SFTVKVADFGLARDILDREYYSVQQH  185 (298)
T ss_dssp             -----TTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECT-TCCEEECCTTSSCTTTTGGGGCSCCS
T ss_pred             -----cccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----cceEEEcC-CCcEEeCcCCCcccccCCcccccccC
Confidence                 13346788899999999999999 99999999999     99999975 4899999999987321      1223


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      ....+|..|+||
T Consensus       186 ~~~~~~~~y~aP  197 (298)
T 3pls_A          186 RHARLPVKWTAL  197 (298)
T ss_dssp             SCTTCGGGGSCH
T ss_pred             cCCCCCccccCh
Confidence            445677788887

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.90  E-value=2e-11  Score=125.52  Aligned_cols=151  Identities=21%  Similarity=0.237  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC--------CCCCCcCCchhhhhHHhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA--------CVNLTSKSEPFWILAKAVKDF  399 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~--------~~ni~~~~~~fw~l~~alk~F  399 (512)
                      +.|+++.+..+|.       .+|+|.+....   ..... .+|  +++.++        |+||+...+.|..        
T Consensus        51 g~V~~~~~~~~~~-------~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~--------  112 (397)
T 1wak_A           51 STVWLSWDIQGKK-------FVAMKVVKSAE---HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI--------  112 (397)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSCH---HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE--------
T ss_pred             eeEEEEEecCCCe-------EEEEEEEecCC---cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee--------
Confidence            5677777777776       88999875321   01111 233  344333        6778766655520        


Q ss_pred             hhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhccccccccc
Q psy17422        400 VDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       400 ~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~nIll  477 (512)
                         .+.....++.++++|..++..++.-.    .....+...++.++.|++.+|.+ |.+ +|+|||||     |+||++
T Consensus       113 ---~~~~~~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDik-----p~NIll  180 (397)
T 1wak_A          113 ---SGVNGTHICMVFEVLGHHLLKWIIKS----NYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIK-----PENILL  180 (397)
T ss_dssp             ---EETTEEEEEEEECCCCCBHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCS-----GGGEEE
T ss_pred             ---cCCCCceEEEEEeccCccHHHHHHhc----ccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCC-----HHHeeE
Confidence               00111237889999988876665321    11347889999999999999999 998 99999999     999999


Q ss_pred             cCCC------------------------------------------------CeEEEecCCCCCCCCCCCccCeeeeeee
Q psy17422        478 NESK------------------------------------------------LVLKLCDFGSASWSHENEITPYLVSRFY  509 (512)
Q Consensus       478 ~~~~------------------------------------------------~~~Kl~DfGlar~~~~~~~t~yv~tr~Y  509 (512)
                      ....                                                ..+|++|||+++.... ..+..++|++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~-~~~~~~gt~~y  259 (397)
T 1wak_A          181 SVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK-HFTEDIQTRQY  259 (397)
T ss_dssp             CCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB-CSCSCCSCGGG
T ss_pred             eccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc-cCccCCCCCcc
Confidence            7432                                                2799999999874332 24567899999


Q ss_pred             ccC
Q psy17422        510 RAP  512 (512)
Q Consensus       510 raP  512 (512)
                      +||
T Consensus       260 ~aP  262 (397)
T 1wak_A          260 RSL  262 (397)
T ss_dssp             CCH
T ss_pred             cCC
Confidence            998

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=98.89  E-value=7e-11  Score=117.02  Aligned_cols=148  Identities=16%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.... ......-.+|  ++..++||||++..+.|.           ..+    
T Consensus        33 g~V~~~~~~~~~~-------~~aiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~~----   89 (302)
T 2j7t_A           33 GKVYKAKNKETGA-------LAAAKVIETKS-EEELEDYIVEIEILATCDHPYIVKLLGAYY-----------HDG----   89 (302)
T ss_dssp             CCEEEEEETTTCC-------EEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----------CC-----
T ss_pred             eEEEEEEEcCCCc-------EEEEEEecCCC-HHHHHHHHHHHHHHhcCCCCCEeeeeeeee-----------eCC----
Confidence            5667777766666       77888765321 1112122344  688899999997766552           111    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.++++|.. ++..++.     +.....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|+
T Consensus        90 ~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl  158 (302)
T 2j7t_A           90 KLWIMIEFCPGGAVDAIML-----ELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLK-----AGNVLMTL-EGDIRL  158 (302)
T ss_dssp             CEEEEEECCTTEEHHHHHH-----HHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----GGGEEECT-TSCEEE
T ss_pred             eEEEEEEeCCCCcHHHHHH-----hhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC-----HHHEEECC-CCCEEE
Confidence            37889999975 4444432     123347888999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||++...  .......+++|..|+||
T Consensus       159 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  186 (302)
T 2j7t_A          159 ADFGVSAKNLKTLQKRDSFIGTPYWMAP  186 (302)
T ss_dssp             CCCHHHHHHHHHHHC-----CCGGGCCH
T ss_pred             EECCCCccccccccccccccCChhhcCC
Confidence            999987521  11123456788999987

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=98.89  E-value=1.1e-10  Score=120.58  Aligned_cols=137  Identities=20%  Similarity=0.145  Sum_probs=87.2

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  +++.++||||++..+.++          +.++    ..+.++|+|.. ++..+++-
T Consensus       119 ~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----------~~~~----~~~lv~e~~~~g~L~~~l~~  184 (373)
T 3c1x_A          119 HCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----------RSEG----SPLVVLPYMKHGDLRNFIRN  184 (373)
T ss_dssp             EEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEEC----------CCSS----CCEEEEECCTTCBHHHHHHC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEE----------cCCC----CeEEEEECCCCCCHHHHHhh
Confidence            4677776542111111111344  578889999998766541          1111    25789999974 77666632


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC------CCc
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE------NEI  500 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~------~~~  500 (512)
                           .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....      ...
T Consensus       185 -----~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----p~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~~~~  253 (373)
T 3c1x_A          185 -----ETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA-----ARNCMLDE-KFTVKVADFGLARDMYDKEFDSVHNK  253 (373)
T ss_dssp             -----TTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEEECCC-----------------
T ss_pred             -----cccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccc-----hheEEECC-CCCEEEeecccccccccccccccccc
Confidence                 22346778889999999999999 99999999999     99999975 48899999999873211      112


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      +...+|..|+||
T Consensus       254 ~~~~~~~~y~aP  265 (373)
T 3c1x_A          254 TGAKLPVKWMAL  265 (373)
T ss_dssp             ----CCGGGSCH
T ss_pred             CCCCCcccccCh
Confidence            345667789887

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=98.89  E-value=1.3e-10  Score=117.30  Aligned_cols=142  Identities=15%  Similarity=0.119  Sum_probs=94.7

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      ..+|+|.+...........-.+|  ++..+ +||||++..+.|           ...    -.++.+++++.. ++..++
T Consensus        68 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l  132 (334)
T 2pvf_A           68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC-----------TQD----GPLYVIVEYASKGNLREYL  132 (334)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----SCCEEEEECCTTCBHHHHH
T ss_pred             eEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE-----------ccC----CceEEEEECCCCCcHHHHH
Confidence            36788877542211111111233  56666 899999766554           111    137889999974 777776


Q ss_pred             HhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        426 ALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       426 ~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      .-....          ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----p~NIll~~-~~~~kL~Dfg~~~~  206 (334)
T 2pvf_A          133 RARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLA-----ARNVLVTE-NNVMKIADFGLARD  206 (334)
T ss_dssp             HTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TCCEEECCCTTCEE
T ss_pred             HHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCc-----cceEEEcC-CCCEEEcccccccc
Confidence            532110          001236788899999999999999 99999999999     99999975 48899999999873


Q ss_pred             CCC----CCccCeeeeeeeccC
Q psy17422        495 SHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       495 ~~~----~~~t~yv~tr~YraP  512 (512)
                      ...    .......+|..|+||
T Consensus       207 ~~~~~~~~~~~~~~~~~~y~aP  228 (334)
T 2pvf_A          207 INNIDYYKKTTNGRLPVKWMAP  228 (334)
T ss_dssp             CTTTSSEECCSCCCCCGGGCCH
T ss_pred             ccccccccccCCCCcccceeCh
Confidence            221    122344567788887

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=98.89  E-value=5.3e-11  Score=119.78  Aligned_cols=142  Identities=12%  Similarity=0.017  Sum_probs=94.8

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++||||++..+.|.           ..    ..++.+++++. .++..++.-
T Consensus        62 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~l~~  126 (327)
T 2yfx_A           62 QVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL-----------QS----LPRFILMELMAGGDLKSFLRE  126 (327)
T ss_dssp             EEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------SS----SSCEEEEECCTTEEHHHHHHH
T ss_pred             eEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc-----------CC----CCcEEEEecCCCCcHHHHHHh
Confidence            6888887532111111111233  678889999997766551           11    13678999996 577777653


Q ss_pred             HHhh-hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEEecCCCCCCC----CCCC
Q psy17422        428 QQLY-RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKLCDFGSASWS----HENE  499 (512)
Q Consensus       428 ~~iy-~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl~DfGlar~~----~~~~  499 (512)
                      .... ......+...+..++.|++.++.+ |..+|+|+|||     |+||++...  ...+|++|||+++..    ....
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlk-----p~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~  201 (327)
T 2yfx_A          127 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIA-----ARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRK  201 (327)
T ss_dssp             TSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEESCSSTTCCEEECCCHHHHHHHC------
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCC-----HhHEEEecCCCcceEEECcccccccccccccccc
Confidence            3211 111347788899999999999999 99999999999     999999732  246999999997621    1112


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      ....++|..|+||
T Consensus       202 ~~~~~~~~~y~aP  214 (327)
T 2yfx_A          202 GGCAMLPVKWMPP  214 (327)
T ss_dssp             CCGGGSCGGGCCH
T ss_pred             CCCcCCCcceeCH
Confidence            2334667889887

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.88  E-value=1.7e-10  Score=116.79  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++||||++..+.+           ...    -.++.++|++.. ++..++.-
T Consensus        75 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~~  139 (333)
T 1mqb_A           75 PVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI-----------SKY----KPMMIITEYMENGALDKFLRE  139 (333)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------CSS----SSEEEEEECCTTEEHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------ecC----CCcEEEEeCCCCCcHHHHHHh
Confidence            3788876532211000011233  68889999999766554           111    237899999985 66666542


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---C--cc
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---E--IT  501 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~--~t  501 (512)
                           .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....   .  ..
T Consensus       140 -----~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----p~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~  208 (333)
T 1mqb_A          140 -----KDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLA-----ARNILVNS-NLVCKVSDFGLSRVLEDDPEATYTTS  208 (333)
T ss_dssp             -----TTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEEECCCCC---------------
T ss_pred             -----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----hheEEECC-CCcEEECCCCcchhhccccccccccC
Confidence                 22357888999999999999999 99999999999     99999975 489999999998743211   1  12


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ...+|..|+||
T Consensus       209 ~~~~~~~y~aP  219 (333)
T 1mqb_A          209 GGKIPIRWTAP  219 (333)
T ss_dssp             --CCCGGGSCH
T ss_pred             CCCccccccCc
Confidence            23446678887

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=98.88  E-value=1.1e-10  Score=113.58  Aligned_cols=133  Identities=13%  Similarity=0.156  Sum_probs=93.8

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.....   -... .+|  ++..++||||++..+.+           ...    -.++.+++++. .++..++.
T Consensus        34 ~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~----~~~~lv~e~~~~~~L~~~l~   95 (268)
T 3sxs_A           34 DVAVKMIKEGSM---SEDEFFQEAQTMMKLSHPKLVKFYGVC-----------SKE----YPIYIVTEYISNGCLLNYLR   95 (268)
T ss_dssp             EEEEEEECBTTB---CHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----SSEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEeccCCC---cHHHHHHHHHHHHhCCCCCEeeEEEEE-----------ccC----CceEEEEEccCCCcHHHHHH
Confidence            578887654211   1122 344  68889999999766554           111    13788999996 55666664


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC---ccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE---ITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~---~t~  502 (512)
                      -.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++......   ...
T Consensus        96 ~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik-----p~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~  164 (268)
T 3sxs_A           96 SH-----GKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLA-----ARNCLVDR-DLCVKVSDFGMTRYVLDDQYVSSVG  164 (268)
T ss_dssp             HH-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCS-----GGGEEECT-TCCEEECCTTCEEECCTTCEEECCS
T ss_pred             Hc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcC-----cceEEECC-CCCEEEccCccceecchhhhhcccC
Confidence            32     1237888999999999999999 99999999999     99999975 4889999999987322211   223


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       165 ~~~~~~y~aP  174 (268)
T 3sxs_A          165 TKFPVKWSAP  174 (268)
T ss_dssp             CCCCGGGCCH
T ss_pred             CCcCcccCCH
Confidence            3455678887

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.88  E-value=2.1e-10  Score=121.30  Aligned_cols=133  Identities=14%  Similarity=0.148  Sum_probs=94.5

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+...    ..... .+|  +|..++||||++....+.          +.    .-+++.++++|.. ++..|++
T Consensus       218 ~vavK~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~----------~~----~~~~~iv~e~~~~g~L~~~l~  279 (450)
T 1k9a_A          218 KVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIV----------EE----KGGLYIVTEYMAKGSLVDYLR  279 (450)
T ss_dssp             EEEEEEESSC----TTSHHHHHHHHHHHTCCCTTBCCEEEEEE----------CT----TSCEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEeCCc----hHHHHHHHHHHHHHhccCCCEEEEEEEEE----------cC----CCceEEEEEecCCCcHHHHHH
Confidence            7888887542    22233 444  789999999997665541          11    1248899999974 7777765


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeee
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLV  505 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~  505 (512)
                      -.    .....+...+..++.|++.++.| |.++|+|||||     |+||++.. .+.+|++|||+++..... .....+
T Consensus       280 ~~----~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk-----p~Nill~~-~~~~kl~DfG~a~~~~~~-~~~~~~  348 (450)
T 1k9a_A          280 SR----GRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA-----ARNVLVSE-DNVAKVSDFGLTKEASST-QDTGKL  348 (450)
T ss_dssp             HH----CTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECT-TSCEEECCCTTCEECC-------CC
T ss_pred             hc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----HhhEEECC-CCCEEEeeCCCccccccc-ccCCCC
Confidence            22    11225778899999999999999 99999999999     99999975 489999999998743221 122355


Q ss_pred             eeeeccC
Q psy17422        506 SRFYRAP  512 (512)
Q Consensus       506 tr~YraP  512 (512)
                      +..|+||
T Consensus       349 ~~~y~aP  355 (450)
T 1k9a_A          349 PVKWTAP  355 (450)
T ss_dssp             CTTTSCH
T ss_pred             CcceeCH
Confidence            6678887

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=98.87  E-value=4.5e-11  Score=117.05  Aligned_cols=154  Identities=18%  Similarity=0.259  Sum_probs=105.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +++.++||||++..+.|+          ...   .
T Consensus        20 g~V~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----------~~~---~   79 (279)
T 2w5a_A           20 GRCQKIRRKSDGK-------ILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRII----------DRT---N   79 (279)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE----------EGG---G
T ss_pred             cEEEEEEECCCCc-------EEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEe----------cCC---C
Confidence            5677777777776       7888887542211111111 233  678889999997665442          111   1


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC-----CChHHHHhhccccccccccCC
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA-----ITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~-----I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      -.++.+++++.. ++..++.-..  ..+...+...+..++.|++.++.+ |..+     |+|+|||     |+||++.. 
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~-----p~NIl~~~-  151 (279)
T 2w5a_A           80 TTLYIVMEYCEGGDLASVITKGT--KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK-----PANVFLDG-  151 (279)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCS-----GGGEEECS-
T ss_pred             ceEEEEEeCCCCCCHHHHHHhhc--ccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccc-----hhhEEEcC-
Confidence            137889999975 7777765322  223347888999999999999999 9888     9999999     99999975 


Q ss_pred             CCeEEEecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      .+.+|++|||+++...  ......+.+|..|+||
T Consensus       152 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  185 (279)
T 2w5a_A          152 KQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSP  185 (279)
T ss_dssp             SSCEEECCCCHHHHC---CHHHHHHHSCCTTCCH
T ss_pred             CCCEEEecCchheeeccccccccccCCCccccCh
Confidence            4889999999986322  1122345778888887

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.86  E-value=1.5e-10  Score=114.16  Aligned_cols=148  Identities=12%  Similarity=-0.004  Sum_probs=104.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+....   ....-.+|  +++.++|++++..-..+          ... +   -
T Consensus        23 g~V~~~~~~~~~~-------~vavK~~~~~~---~~~~~~~e~~~l~~l~~~~~i~~~~~~----------~~~-~---~   78 (296)
T 3uzp_A           23 GDIYLGTDIAAGE-------EVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWC----------GAE-G---D   78 (296)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEESCS---SCCHHHHHHHHHHHHTTSTTCCCEEEE----------EEE-T---T
T ss_pred             eEEEEEEEcCCCc-------EEEEEEecCCc---chhHHHHHHHHHHHhhcCCCCCccccc----------cCC-C---C
Confidence            5677888777777       88999765422   12222333  67777887765432222          111 1   1


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc--CCCCeEE
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN--ESKLVLK  485 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~--~~~~~~K  485 (512)
                      .++.+++++..++..++...     +...+...+..++.|++.++.+ |.++|+|+|||     |+||++.  ...+.+|
T Consensus        79 ~~~lv~e~~~~~L~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk-----p~NIl~~~~~~~~~~k  148 (296)
T 3uzp_A           79 YNVMVMELLGPSLEDLFNFC-----SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK-----PDNFLMGLGKKGNLVY  148 (296)
T ss_dssp             EEEEEEECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECCGGGTTCEE
T ss_pred             ceEEEEEecCCCHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----HHHeEEecCCCCCeEE
Confidence            36789999977777776421     2347888999999999999999 99999999999     9999995  2347899


Q ss_pred             EecCCCCCCCCC---------CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE---------NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~---------~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....         .......+|..|+||
T Consensus       149 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  184 (296)
T 3uzp_A          149 IIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI  184 (296)
T ss_dssp             ECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCH
T ss_pred             EeeCCCcccccccccccccccccccccccccccCCh
Confidence            999999873211         123567899999998

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.86  E-value=5.5e-10  Score=110.94  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             HhHHHHhhhhcC--CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHH
Q psy17422        351 EEAMKAVNFALI--PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRY  424 (512)
Q Consensus       351 ~eAik~v~~~~~--~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~y  424 (512)
                      .+|+|.+.....  ....... .+|  +++.++||||++..+.+           ...+    .++.+++++. .++..+
T Consensus        56 ~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~~~----~~~lv~e~~~~~~L~~~  120 (307)
T 2nru_A           56 TVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS-----------SDGD----DLCLVYVYMPNGSLLDR  120 (307)
T ss_dssp             EEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSSS----SCEEEEECCTTCBHHHH
T ss_pred             eEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEE-----------ecCC----ceEEEEEecCCCcHHHH
Confidence            788887754322  1111222 233  68889999999766554           1111    2678899996 566666


Q ss_pred             HHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC---C-CC
Q psy17422        425 IALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH---E-NE  499 (512)
Q Consensus       425 v~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~---~-~~  499 (512)
                      +..   .......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++...   . ..
T Consensus       121 l~~---~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~  191 (307)
T 2nru_A          121 LSC---LDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIK-----SANILLDE-AFTAKISDFGLARASEKFAQTVM  191 (307)
T ss_dssp             HHT---GGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECT-TCCEEECCCTTCEECCSCSSCEE
T ss_pred             HHh---ccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCC-----HHHEEEcC-CCcEEEeeccccccccccccccc
Confidence            542   1223347888899999999999999 99999999999     99999975 4889999999987321   1 12


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      ....++|..|+||
T Consensus       192 ~~~~~g~~~y~aP  204 (307)
T 2nru_A          192 TSRIVGTTAYMAP  204 (307)
T ss_dssp             CSSCCSCGGGCCH
T ss_pred             ccccCCCcCcCCh
Confidence            3456789999998

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.86  E-value=3e-10  Score=125.68  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+.....+.....-.+|  ++..++||||+...+.+.    ....+.     ..-
T Consensus        28 G~Vyla~~~~tg~-------~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~----~~~~~~-----~~~   91 (676)
T 3qa8_A           28 GYVLRWIHQDTGE-------QVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPD----GLQKLA-----PND   91 (676)
T ss_dssp             SBCCCCCCTTTTC-------CEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCT----TTCCCC-----TTS
T ss_pred             eEEEEEEECCCCc-------EEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeec----cccccc-----CCC
Confidence            6677777777777       7899987543211111111233  688899999997655431    001111     011


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC--CeE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK--LVL  484 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~--~~~  484 (512)
                      ..+.++++|. .++..++.-.   ......+...+..++.|++.++.+ |..+|+|+|||     |+||++....  ..+
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~---~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLK-----P~NILl~~~g~~~~v  163 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQF---ENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLK-----PENIVLQPGPQRLIH  163 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSS---SCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCC-----STTEEEECCSSSCEE
T ss_pred             eEEEEEEeCCCCCHHHHHHhc---ccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC-----HHHeEeecCCCceeE
Confidence            2578899996 5666665421   112246778899999999999999 99999999999     9999997542  258


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+++.. .......+++|..|+||
T Consensus       164 KL~DFG~a~~~~~~~~~~~~~gt~~Y~AP  192 (676)
T 3qa8_A          164 KIIDLGYAKELDQGELCTEFVGTLQYLAP  192 (676)
T ss_dssp             EECSCCCCCBTTSCCCCCCCCSCCTTCSS
T ss_pred             EEcccccccccccccccccccCCcccCCh
Confidence            99999999843 33445678899999998

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.86  E-value=1e-10  Score=117.77  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=91.4

Q ss_pred             HhHHHHhhhhcCCCCCchH--HHHH--HhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS--VASI--LNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~--~~el--l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      .+|+|.+.....    ...  .+++  +..++|+||++....+.          .....+...++.++|+|. .++..++
T Consensus        38 ~vavK~~~~~~~----~~~~~e~~~~~~~~~~h~~i~~~~~~~~----------~~~~~~~~~~~lv~e~~~~g~L~~~l  103 (336)
T 3g2f_A           38 PVAVKVFSFANR----QNFINEKNIYRVPLMEHDNIARFIVGDE----------RVTADGRMEYLLVMEYYPNGSLXKYL  103 (336)
T ss_dssp             EEEEEEEEGGGH----HHHHHHHHHHTSTTCCCTTBCCEEEEEE----------EECTTSCEEEEEEECCCTTCBHHHHH
T ss_pred             EEEEEEeeccch----hhHHHHHHHHHHHhccCcchhhheeccc----------ccccCCCceEEEEEecCCCCcHHHHH
Confidence            788888753211    111  1234  33478999996543220          000122234678999996 4776666


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC---------CCChHHHHhhccccccccccCCCCeEEEecCCCCCCC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS---------AITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS  495 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~---------~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~  495 (512)
                      +-       ...+...+..++.|++.+|.+ |..         +|+|+|||     |+||++.. .+.+|++|||+++..
T Consensus       104 ~~-------~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dik-----p~Nill~~-~~~~kL~DFG~a~~~  170 (336)
T 3g2f_A          104 SL-------HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLN-----SRNVLVKN-DGTCVISDFGLSMRL  170 (336)
T ss_dssp             HH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCS-----GGGEEECT-TSCEEECCCTTCEEC
T ss_pred             hh-------cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccc-----cceEEEcC-CCcEEEeeccceeec
Confidence            32       234677888899999999999 999         99999999     99999975 489999999998622


Q ss_pred             C----------CCCccCeeeeeeeccC
Q psy17422        496 H----------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       496 ~----------~~~~t~yv~tr~YraP  512 (512)
                      .          .......++|..|+||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (336)
T 3g2f_A          171 TGNRLVRPGEEDNAAISEVGTIRYMAP  197 (336)
T ss_dssp             SSSSCC---------CCTTSCGGGCCH
T ss_pred             ccccccCccccccccccCCCccceeCc
Confidence            1          1223466899999998

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.86  E-value=1.1e-10  Score=120.57  Aligned_cols=147  Identities=18%  Similarity=0.193  Sum_probs=99.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC-CCC-----CCcCCchhhhhHHhhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA-CVN-----LTSKSEPFWILAKAVKDFVD  401 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~-~~n-----i~~~~~~fw~l~~alk~F~~  401 (512)
                      +.|+++.+..+|.       .+|+|.+....   ..... .+|  +++.++ |+|     ++...+.|          ..
T Consensus        68 g~V~~~~~~~~~~-------~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~----------~~  127 (382)
T 2vx3_A           68 GQVVKAYDRVEQE-------WVAIKIIKNKK---AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHF----------MF  127 (382)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSSH---HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEE----------EE
T ss_pred             EEEEEEEEcCCCc-------EEEEEEEeccH---HHHHHHHHHHHHHHHHHhcccccceeEEEeeeee----------cc
Confidence            5677777777776       78999875311   11111 122  344443 444     44333333          11


Q ss_pred             cCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-C--CCCCChHHHHhhcccccccccc
Q psy17422        402 NEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P--SSAITEAQVKLFCRNASFIHVN  478 (512)
Q Consensus       402 ~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h--~~~I~hrdIK~Fc~n~~nIll~  478 (512)
                       .+    .++.++++|..++..++.-..    ....+...+..++.|++.++.+ |  ..+|+|||||     |+||++.
T Consensus       128 -~~----~~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlk-----p~NIll~  193 (382)
T 2vx3_A          128 -RN----HLCLVFEMLSYNLYDLLRNTN----FRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLK-----PENILLC  193 (382)
T ss_dssp             -TT----EEEEEEECCCCBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCS-----GGGEEES
T ss_pred             -CC----ceEEEEecCCCCHHHHHhhcC----cCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCC-----cccEEEe
Confidence             11    278899999888776664221    1347888999999999999999 8  5799999999     9999995


Q ss_pred             C-CCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        479 E-SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       479 ~-~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      . .++.+|++|||+++.... ....+++|++|+||
T Consensus       194 ~~~~~~~kL~DFG~a~~~~~-~~~~~~~t~~y~aP  227 (382)
T 2vx3_A          194 NPKRSAIKIVDFGSSCQLGQ-RIYQYIQSRFYRSP  227 (382)
T ss_dssp             STTSCCEEECCCTTCEETTC-CCCSSCSCGGGCCH
T ss_pred             cCCCCcEEEEeccCceeccc-ccccccCCccccCh
Confidence            3 357899999999975432 34567899999998

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.85  E-value=2.8e-10  Score=112.06  Aligned_cols=150  Identities=11%  Similarity=-0.031  Sum_probs=102.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.+..+|.       .+|+|.+........+..+ .+++..++|++++.....+          ....    -..
T Consensus        23 g~V~~~~~~~~~~-------~vavK~~~~~~~~~~~~~e-~~~l~~l~~~~~i~~~~~~----------~~~~----~~~   80 (296)
T 4hgt_A           23 GDIYLGTDIAAGE-------EVAIKLECVKTKHPQLHIE-SKIYKMMQGGVGIPTIRWC----------GAEG----DYN   80 (296)
T ss_dssp             SEEEEEEETTTTE-------EEEEEEEEC---CCCHHHH-HHHHHHHTTSTTCCCEEEE----------EEET----TEE
T ss_pred             eEEEEEEEcCCCc-------eEEEEeecccccchHHHHH-HHHHHHhcCCCCCCeeeee----------cCCC----Cce
Confidence            5677777777777       8898865433222222221 2257777777766432222          1111    126


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc--CCCCeEEEe
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN--ESKLVLKLC  487 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~--~~~~~~Kl~  487 (512)
                      +.+++++..++..++..     .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.  ...+.+|++
T Consensus        81 ~lv~e~~~~~L~~~~~~-----~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk-----p~NIl~~~~~~~~~~kL~  150 (296)
T 4hgt_A           81 VMVMELLGPSLEDLFNF-----CSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK-----PDNFLMGLGKKGNLVYII  150 (296)
T ss_dssp             EEEEECCCCBHHHHHHH-----TTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECCGGGTTCEEEC
T ss_pred             EEEEEccCCCHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----HHHeeeeccCCCCeEEEe
Confidence            78899997777776642     12347888999999999999999 99999999999     9999983  234789999


Q ss_pred             cCCCCCCCCC---------CCccCeeeeeeeccC
Q psy17422        488 DFGSASWSHE---------NEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~~---------~~~t~yv~tr~YraP  512 (512)
                      |||+++....         .......+|..|+||
T Consensus       151 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  184 (296)
T 4hgt_A          151 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASI  184 (296)
T ss_dssp             CCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCH
T ss_pred             cCccceeccCcccCccCCCCcccccCCCccccch
Confidence            9999873211         123467899999997

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.85  E-value=1.1e-10  Score=118.62  Aligned_cols=118  Identities=10%  Similarity=0.011  Sum_probs=87.5

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQ  452 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~  452 (512)
                      ++..++|+||+...+.+.          . +..+...++.++++|..++..++.      .....+...+..++.|++.+
T Consensus       101 ~~~~l~h~ni~~~~~~~~----------~-~~~~~~~~~lv~e~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~a  163 (345)
T 2v62_A          101 ERKQLDYLGIPLFYGSGL----------T-EFKGRSYRFMVMERLGIDLQKISG------QNGTFKKSTVLQLGIRMLDV  163 (345)
T ss_dssp             HHHTCSCCCCCCEEEEEE----------E-ESSSCEEEEEEEECEEEEHHHHCB------GGGBCCHHHHHHHHHHHHHH
T ss_pred             hhccccccCcceeecccc----------c-ccCCCcEEEEEEeccCCCHHHHHH------hcCCCCHHHHHHHHHHHHHH
Confidence            467789999997666552          1 001122378899999666655543      22357888999999999999


Q ss_pred             hCC-CCCCCChHHHHhhccccccccccCCC-CeEEEecCCCCCCC---------CCCCccCeeeeeeeccC
Q psy17422        453 LGQ-PSSAITEAQVKLFCRNASFIHVNESK-LVLKLCDFGSASWS---------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       453 l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~-~~~Kl~DfGlar~~---------~~~~~t~yv~tr~YraP  512 (512)
                      +.+ |..+|+|+|||     |+||++.... +.+|++|||+++..         ........++|..|+||
T Consensus       164 L~~LH~~~ivH~Dlk-----p~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  229 (345)
T 2v62_A          164 LEYIHENEYVHGDIK-----AANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSL  229 (345)
T ss_dssp             HHHHHHTTEECSCCS-----GGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCH
T ss_pred             HHHHHhCCeeCCCcC-----HHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCH
Confidence            999 99999999999     9999997541 38999999998622         11223567899999998

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=98.85  E-value=1.5e-10  Score=114.38  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=90.6

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+............ .+|  ++..++||||++..+.+           +. +    .++.+++++. .++..++.
T Consensus        46 ~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----------~~-~----~~~lv~e~~~~~~L~~~l~  109 (291)
T 1xbb_A           46 TVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-----------EA-E----SWMLVMEMAELGPLNKYLQ  109 (291)
T ss_dssp             EEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------ES-S----SEEEEEECCTTEEHHHHHH
T ss_pred             eEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-----------CC-C----CcEEEEEeCCCCCHHHHHH
Confidence            7888877543222211222 233  68888999999765543           11 1    2678899997 45555553


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CC---Cc
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--EN---EI  500 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~---~~  500 (512)
                            .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++...  ..   ..
T Consensus       110 ------~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dik-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~  177 (291)
T 1xbb_A          110 ------QNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLA-----ARNVLLVT-QHYAKISDFGLSKALRADENYYKAQ  177 (291)
T ss_dssp             ------HCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEEE-TTEEEECCCTTCEECCTTCSEEEC-
T ss_pred             ------hCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCC-----cceEEEeC-CCcEEEccCCcceeeccCCCccccc
Confidence                  33447888999999999999999 99999999999     99999975 4899999999987321  11   11


Q ss_pred             cCeeeeeeeccC
Q psy17422        501 TPYLVSRFYRAP  512 (512)
Q Consensus       501 t~yv~tr~YraP  512 (512)
                      ....+|..|+||
T Consensus       178 ~~~~~~~~y~aP  189 (291)
T 1xbb_A          178 THGKWPVKWYAP  189 (291)
T ss_dssp             ---CCCGGGCCH
T ss_pred             ccCCCCceeeCh
Confidence            223445678887

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.85  E-value=1.6e-10  Score=113.54  Aligned_cols=135  Identities=11%  Similarity=0.112  Sum_probs=91.7

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  +++.++||||++..+.|           .. +    ..+.+++++. .++..++.-
T Consensus        42 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~-~----~~~~v~e~~~~~~L~~~l~~  105 (281)
T 3cc6_A           42 NVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGII-----------EE-E----PTWIIMELYPYGELGHYLER  105 (281)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEE-----------CS-S----SCEEEEECCTTCBHHHHHHH
T ss_pred             eEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEE-----------cC-C----CCEEEEecCCCCCHHHHHHh
Confidence            4788776542111011111233  57888999999765544           11 1    2568899987 566666542


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---CccCe
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EITPY  503 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t~y  503 (512)
                           .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....   .....
T Consensus       106 -----~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~  174 (281)
T 3cc6_A          106 -----NKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIA-----VRNILVAS-PECVKLGDFGLSRYIEDEDYYKASVT  174 (281)
T ss_dssp             -----HTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----GGGEEEEE-TTEEEECCCCGGGCC---------CC
T ss_pred             -----ccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc-----cceEEECC-CCcEEeCccCCCcccccccccccccC
Confidence                 22347888899999999999999 99999999999     99999975 489999999998743211   12334


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      .+|..|+||
T Consensus       175 ~~~~~y~aP  183 (281)
T 3cc6_A          175 RLPIKWMSP  183 (281)
T ss_dssp             CCCGGGCCH
T ss_pred             CCCcceeCc
Confidence            566778887

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=98.84  E-value=1.5e-10  Score=116.52  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             cchhhhc----cccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIR----KDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~----~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.    ++.+|.       .+|+|.+....  ...... .+|  ++..++|+||+.....++          .. 
T Consensus        37 g~V~~~~~~~~~~~~~~-------~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----------~~-   96 (327)
T 3lxl_A           37 GSVELCRYDPLGDNTGA-------LVAVKQLQHSG--PDQQRDFQREIQILKALHSDFIVKYRGVSY----------GP-   96 (327)
T ss_dssp             EEEEEEEECTTSSSCSE-------EEEEEEESSCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEE----------CS-
T ss_pred             eEEEEEEeccCCCCcce-------EEEEEEeccCC--HHHHHHHHHHHHHHHhcCCCceeEEEEEEe----------cC-
Confidence            5566665    444554       78888875321  000111 233  688899999997665552          11 


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                        +.-.++.+++++. .++..++.-.     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .
T Consensus        97 --~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dik-----p~NIl~~~-~  163 (327)
T 3lxl_A           97 --GRQSLRLVMEYLPSGCLRDFLQRH-----RARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA-----ARNILVES-E  163 (327)
T ss_dssp             --SSCEEEEEEECCTTCBHHHHHHHH-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEEE-T
T ss_pred             --CCceEEEEEeecCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC-----hhhEEECC-C
Confidence              1123778999995 5666666422     2347888999999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCC-----CCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHE-----NEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~-----~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++....     .......+|..|+||
T Consensus       164 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  199 (327)
T 3lxl_A          164 AHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAP  199 (327)
T ss_dssp             TEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCH
T ss_pred             CCEEEcccccceecccCCccceeeccCCccccccCH
Confidence            8999999999873221     123345678889887

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=98.84  E-value=1.2e-10  Score=116.40  Aligned_cols=154  Identities=15%  Similarity=0.016  Sum_probs=106.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+...-  ...... .+|  +++.++||||++..+.+.          . +....
T Consensus        43 g~V~~~~~~~~~~-------~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~-~~~~~  102 (317)
T 2buj_A           43 SYVDLVEGLHDGH-------FYALKRILCHE--QQDREEAQREADMHRLFNHPNILRLVAYCL----------R-ERGAK  102 (317)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEESS--HHHHHHHHHHHHHHHTCCCTTBCCCCEEEE----------E-EETTE
T ss_pred             eEEEEEEecCCCc-------EEEEEEEecCC--HHHHHHHHHHHHHHhhcCCCCeeeEEEEEE----------e-ccCCC
Confidence            5677777777776       88998764310  111111 233  688899999998766552          1 11112


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..++.+++++.. ++..++.-.  .......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|
T Consensus       103 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlk-----p~NIl~~~-~~~~k  174 (317)
T 2buj_A          103 HEAWLLLPFFKRGTLWNEIERL--KDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLK-----PTNILLGD-EGQPV  174 (317)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHH--HTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TSCEE
T ss_pred             ceeEEEEEeCCCCcHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEEcC-CCCEE
Confidence            236788999985 777776532  2233457889999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCCC-----------CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE-----------NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~-----------~~~t~yv~tr~YraP  512 (512)
                      ++|||+++....           .......+|..|+||
T Consensus       175 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  212 (317)
T 2buj_A          175 LMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAP  212 (317)
T ss_dssp             ECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCG
T ss_pred             EEecCcchhcccccccccccccccccccccCCcccCCH
Confidence            999999763210           012334568888887

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.84  E-value=3.4e-10  Score=119.85  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=92.0

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+.....   -... .+|  +|+.++||||++....+           ..     -+++.++++|. .++..+++
T Consensus       210 ~vavK~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~-----------~~-----~~~~iv~e~~~~gsL~~~l~  270 (452)
T 1fmk_A          210 RVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV-----------SE-----EPIYIVTEYMSKGSLLDFLK  270 (452)
T ss_dssp             EEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CS-----SSCEEEECCCTTCBHHHHHS
T ss_pred             eEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEE-----------cC-----CceEEEehhhcCCCHHHHHH
Confidence            588888754211   1222 344  78999999999765543           11     24789999997 47777764


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCc---cC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEI---TP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~---t~  502 (512)
                      -.    .....+...+..++.|++.++.+ |..+|+|||||     |+||++.. .+.+|++|||+++......+   ..
T Consensus       271 ~~----~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlk-----p~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~  340 (452)
T 1fmk_A          271 GE----TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR-----AANILVGE-NLVCKVADFGLARLIEDNEYTARQG  340 (452)
T ss_dssp             HH----HHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEECCCCTTC------------
T ss_pred             hc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----hhhEEECC-CCCEEECCCccceecCCCceecccC
Confidence            21    12236788899999999999999 99999999999     99999975 48899999999984332221   23


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..++..|+||
T Consensus       341 ~~~~~~y~aP  350 (452)
T 1fmk_A          341 AKFPIKWTAP  350 (452)
T ss_dssp             --CCGGGSCH
T ss_pred             CcccccccCH
Confidence            3455678887

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.83  E-value=1.1e-10  Score=123.02  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=86.8

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhh-CCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccCChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILND-NACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTADTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~-~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L  427 (512)
                      .+|+|.+.....    ....+|  ++.. .+||||++....+           ...+    .++.++++|..++..++.-
T Consensus        41 ~vAvK~~~~~~~----~~~~~E~~~l~~l~~HpnIv~~~~~~-----------~~~~----~~~lv~E~~~gsL~~~l~~  101 (434)
T 2rio_A           41 PVAVKRMLIDFC----DIALMEIKLLTESDDHPNVIRYYCSE-----------TTDR----FLYIALELCNLNLQDLVES  101 (434)
T ss_dssp             EEEEEEEEGGGH----HHHHHHHHHHHHHTTSTTBCCEEEEE-----------ECSS----EEEEEECCCSEEHHHHHHT
T ss_pred             EEEEEEEcHHHH----HHHHHHHHHHHhccCCCCcCeEEEEE-----------ecCC----eEEEEEecCCCCHHHHHhc
Confidence            889998754221    111334  4554 4899999765443           1111    2788999998888777764


Q ss_pred             HHhhhhcc-CCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC------------CCeEEEecCCCCC
Q psy17422        428 QQLYRDQA-GRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES------------KLVLKLCDFGSAS  493 (512)
Q Consensus       428 ~~iy~~ka-~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~------------~~~~Kl~DfGlar  493 (512)
                      ........ ......+..++.|++.|+.+ |..+|+|+|||     |+||++...            ...+|++|||+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLk-----p~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~  176 (434)
T 2rio_A          102 KNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLK-----PQNILVSTSSRFTADQQTGAENLRILISDFGLCK  176 (434)
T ss_dssp             C------------CCHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCE
T ss_pred             cCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCC-----hHhEEEecCcccccccccCCCceEEEEcccccce
Confidence            33221110 11223456789999999999 99999999999     999999642            2479999999987


Q ss_pred             CCCC------CCccCeeeeeeeccC
Q psy17422        494 WSHE------NEITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~~~~------~~~t~yv~tr~YraP  512 (512)
                      ....      ......++|++|+||
T Consensus       177 ~~~~~~~~~~~~~~~~~gt~~y~aP  201 (434)
T 2rio_A          177 KLDSGQSSFRTNLNNPSGTSGWRAP  201 (434)
T ss_dssp             ECCC--------------CCTTSCH
T ss_pred             ecCCCCccceeeecCCCCCCCccCH
Confidence            3221      123456899999998

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.83  E-value=3.5e-10  Score=125.50  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             hccccCCCCCCCc-------ChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        336 IRKDENGIPLSEE-------NFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       336 ~~~~~~~~~~~~~-------n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +..+..|..|...       ...+|+|.+..... ...... .+|  ++..++||||++..+.+           . ++ 
T Consensus       398 LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~~~~-----------~-~~-  463 (656)
T 2j0j_A          398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHIVKLIGVI-----------T-EN-  463 (656)
T ss_dssp             EECCSSCCEEEEEECCSSSCCEEEEEEECSSTTC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------C-SS-
T ss_pred             EeeCCCEEEEEEEEecCCCccEEEEEEEecccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----------e-cC-
Confidence            5555555554322       22467776543211 011111 233  68889999999765543           1 11 


Q ss_pred             CCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         +++.++++|. .++..+++..     +...+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.
T Consensus       464 ---~~~lv~E~~~~g~L~~~l~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDik-----p~NILl~~-~~~  529 (656)
T 2j0j_A          464 ---PVWIIMELCTLGELRSFLQVR-----KFSLDLASLILYAYQLSTALAYLESKRFVHRDIA-----ARNVLVSS-NDC  529 (656)
T ss_dssp             ---SCEEEEECCTTCBHHHHHHHT-----TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEEE-TTE
T ss_pred             ---ceEEEEEcCCCCcHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCccccccc-----hHhEEEeC-CCC
Confidence               2788999998 5776666422     2347888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.....   ..+...+|..|+||
T Consensus       530 vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aP  561 (656)
T 2j0j_A          530 VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP  561 (656)
T ss_dssp             EEECCCCCCCSCCC----------CCGGGCCH
T ss_pred             EEEEecCCCeecCCCcceeccCCCCCcceeCH
Confidence            999999999843222   12234556789998

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.83  E-value=3.4e-10  Score=121.10  Aligned_cols=148  Identities=11%  Similarity=-0.021  Sum_probs=102.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++.+..+|.       .+|+|.+........   -.+|  ++..++|.+.+..-..|          ....    -
T Consensus        21 G~Vy~a~~~~~~~-------~vAvK~~~~~~~~~~---~~~E~~il~~L~~~~~i~~i~~~----------~~~~----~   76 (483)
T 3sv0_A           21 GEIYLGTNIQTNE-------EVAIKLENVKTKHPQ---LLYESKIYRILQGGTGIPNVRWF----------GVEG----D   76 (483)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEETTCSSCC---HHHHHHHHHHTTTSTTCCCEEEE----------EEET----T
T ss_pred             EEEEEEEECCCCc-------EEEEEEeccccccHH---HHHHHHHHHHhcCCCCCCeEEEE----------EeeC----C
Confidence            6777887777777       899996554322222   2333  67777765544322222          1111    1


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhcccccccccc--CCCCeEE
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVN--ESKLVLK  485 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~--~~~~~~K  485 (512)
                      ..+.+|+++..++..++...     ....+...+..++.|++.+|.| |..+|+|+|||     |+||++.  ...+.+|
T Consensus        77 ~~~lvme~~g~sL~~ll~~~-----~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIK-----P~NILl~~~~~~~~vk  146 (483)
T 3sv0_A           77 YNVLVMDLLGPSLEDLFNFC-----SRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIK-----PDNFLMGLGRRANQVY  146 (483)
T ss_dssp             EEEEEEECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECCGGGTTCEE
T ss_pred             EEEEEEECCCCCHHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC-----cceEEEecCCCCCeEE
Confidence            26788999988877776421     2347889999999999999999 99999999999     9999994  2347899


Q ss_pred             EecCCCCCCCCC---------CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE---------NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~---------~~~t~yv~tr~YraP  512 (512)
                      |+|||+++....         .....+++|..|+||
T Consensus       147 L~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aP  182 (483)
T 3sv0_A          147 IIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASV  182 (483)
T ss_dssp             ECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCH
T ss_pred             EEeCCcceeccCCccccccccccccccCCCccccCH
Confidence            999999873211         112367899999987

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.83  E-value=1.5e-10  Score=117.88  Aligned_cols=163  Identities=13%  Similarity=0.011  Sum_probs=102.3

Q ss_pred             cchhhhccccCCCCCCC-cChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhH-Hh---hhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSE-ENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILA-KA---VKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~-~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~-~a---lk~F~~~~  403 (512)
                      +.|+++.+..++..... .+..+|+|.+...   ..   -.+|  +++.++||||+.....+...- ..   +-.+... 
T Consensus        56 g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---~~---~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~-  128 (352)
T 2jii_A           56 GILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---GR---LFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVH-  128 (352)
T ss_dssp             EEEEEEEECC-----------CEEEEEEETT---ST---HHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEE-
T ss_pred             eEEEEEeecCCccccccccCceEEEEEeccc---ch---HHHHHHHHHHhcccchhhhhhhhccCCccCccchhhcccc-
Confidence            56777777664221111 1337888876532   11   1333  678889999874211110000 00   0001001 


Q ss_pred             CCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC
Q psy17422        404 GNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL  482 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~  482 (512)
                        ..-.++.++|+|..++..++.-.    .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++... +
T Consensus       129 --~~~~~~lv~e~~~~~L~~~l~~~----~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dik-----p~NIl~~~~-~  196 (352)
T 2jii_A          129 --QDKYRFLVLPSLGRSLQSALDVS----PKHVLSERSVLQVACRLLDALEFLHENEYVHGNVT-----AENIFVDPE-D  196 (352)
T ss_dssp             --TTTEEEEEEECCCEEHHHHHHHS----GGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCC-----GGGEEEETT-E
T ss_pred             --CCcEEEEEecCCCcCHHHHHHhC----CcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC-----HHHEEEcCC-C
Confidence              01237889999977877777532    12458889999999999999999 99999999999     999999754 5


Q ss_pred             --eEEEecCCCCCCCC---------CCCccCeeeeeeeccC
Q psy17422        483 --VLKLCDFGSASWSH---------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       483 --~~Kl~DfGlar~~~---------~~~~t~yv~tr~YraP  512 (512)
                        .+|++|||+++...         ....+..++|..|+||
T Consensus       197 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  237 (352)
T 2jii_A          197 QSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISM  237 (352)
T ss_dssp             EEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCH
T ss_pred             CceEEEecCcceeeccCCCccccccccccccccCCccccCH
Confidence              89999999987321         1123456899999998

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.83  E-value=2.7e-10  Score=120.64  Aligned_cols=133  Identities=16%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+....  .. ... .+|  +|+.++||||++....+           ..     -+++.++++|. .++..++.
T Consensus       214 ~vavK~~~~~~--~~-~~~~~~E~~~l~~l~h~~iv~l~~~~-----------~~-----~~~~lv~e~~~~g~L~~~l~  274 (454)
T 1qcf_A          214 KVAVKTMKPGS--MS-VEAFLAEANVMKTLQHDKLVKLHAVV-----------TK-----EPIYIITEFMAKGSLLDFLK  274 (454)
T ss_dssp             EEEEEEECTTS--BC-HHHHHHHHHHHTTCCCTTBCCEEEEE-----------CS-----SSCEEEECCCTTCBHHHHHH
T ss_pred             EEEEEEecCCC--cc-HHHHHHHHHHHhhCCCCCEeeEEEEE-----------eC-----CccEEEEeecCCCcHHHHHH
Confidence            68888875421  11 122 344  78889999999765544           11     14789999997 57777765


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC---ccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE---ITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~---~t~  502 (512)
                      -..    ....+...+..++.|++.++.| |..+|+|||||     |+||++.. .+.+|++|||+++......   ...
T Consensus       275 ~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk-----p~Nill~~-~~~~kl~DFG~a~~~~~~~~~~~~~  344 (454)
T 1qcf_A          275 SDE----GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLR-----AANILVSA-SLVCKIADFGLARVIEDNEYTAREG  344 (454)
T ss_dssp             SHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCS-----GGGEEECT-TCCEEECSTTGGGGBCCHHHHTTCS
T ss_pred             hcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC-----HHHEEECC-CCcEEEeeCCCceEcCCCceeccCC
Confidence            321    1246778888999999999999 99999999999     99999975 4899999999998432211   122


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       345 ~~~~~~y~aP  354 (454)
T 1qcf_A          345 AKFPIKWTAP  354 (454)
T ss_dssp             SSSCGGGSCH
T ss_pred             CcccccccCH
Confidence            3345678887

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.82  E-value=8e-11  Score=117.99  Aligned_cols=93  Identities=25%  Similarity=0.292  Sum_probs=74.6

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--------
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--------  480 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--------  480 (512)
                      ++.++|+|..++..++.-..    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++...        
T Consensus        92 ~~lv~e~~~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-----p~Nil~~~~~~~~~~~~  162 (339)
T 1z57_A           92 ICIVFELLGLSTYDFIKENG----FLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLK-----PENILFVQSDYTEAYNP  162 (339)
T ss_dssp             EEEEEECCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESCCCEEEEEC-
T ss_pred             EEEEEcCCCCCHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----HHHEEEeccccccccCC
Confidence            78899999888877764321    1246788999999999999999 99999999999     999999753        


Q ss_pred             ----------CCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        481 ----------KLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ----------~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                                .+.+|++|||+++.... .....++|+.|+||
T Consensus       163 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~-~~~~~~gt~~y~aP  203 (339)
T 1z57_A          163 KIKRDERTLINPDIKVVDFGSATYDDE-HHSTLVSTRHYRAP  203 (339)
T ss_dssp             ---CEEEEESCCCEEECCCSSCEETTS-CCCSSCSCGGGCCH
T ss_pred             ccccccccccCCCceEeeCcccccCcc-ccccccCCccccCh
Confidence                      35699999999874332 23456889999998

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=98.82  E-value=3.9e-10  Score=113.70  Aligned_cols=145  Identities=17%  Similarity=0.050  Sum_probs=101.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhh--CCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILND--NACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~--~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+  +|.       .+|+|.+....    .....+|  ++..  ++||||+...+.+.           .....
T Consensus        56 g~Vy~~~~--~~~-------~vavK~~~~~~----~~~~~~e~~~~~~~~l~h~ni~~~~~~~~-----------~~~~~  111 (342)
T 1b6c_B           56 GEVWRGKW--RGE-------EVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFIAADN-----------KDNGT  111 (342)
T ss_dssp             EEEEEEEE--TTE-------EEEEEEECGGG----HHHHHHHHHHHHHSCCCCTTBCCEEEEEE-----------CCCSS
T ss_pred             cEEEEEEE--cCc-------cEEEEEeCchh----HHHHHHHHHHHHHhhcCCCcEEEEEeeec-----------ccCCc
Confidence            56666654  344       78888764321    1111233  5555  78999997655541           11111


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-C--------CCCCChHHHHhhcccccccc
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-P--------SSAITEAQVKLFCRNASFIH  476 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h--------~~~I~hrdIK~Fc~n~~nIl  476 (512)
                      ...++.++|++.. ++..+++-       ...+...+..++.|++.++.+ |        ..+|+|+|||     |+||+
T Consensus       112 ~~~~~lv~e~~~~g~L~~~l~~-------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlk-----p~NIl  179 (342)
T 1b6c_B          112 WTQLWLVSDYHEHGSLFDYLNR-------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK-----SKNIL  179 (342)
T ss_dssp             CCCEEEEECCCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCS-----GGGEE
T ss_pred             cceeEEEEeecCCCcHHHHHhc-------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCC-----HHHEE
Confidence            2247899999985 77776631       247788899999999999999 9        8999999999     99999


Q ss_pred             ccCCCCeEEEecCCCCCCCCC-C-----CccCeeeeeeeccC
Q psy17422        477 VNESKLVLKLCDFGSASWSHE-N-----EITPYLVSRFYRAP  512 (512)
Q Consensus       477 l~~~~~~~Kl~DfGlar~~~~-~-----~~t~yv~tr~YraP  512 (512)
                      +.. .+.+|++|||+++.... .     .....++|..|+||
T Consensus       180 l~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aP  220 (342)
T 1b6c_B          180 VKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP  220 (342)
T ss_dssp             ECT-TSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCH
T ss_pred             ECC-CCCEEEEECCCceeccccccccccccccCCcCcccCCH
Confidence            975 48899999999873211 1     23456899999998

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.81  E-value=3.4e-10  Score=111.82  Aligned_cols=113  Identities=16%  Similarity=0.126  Sum_probs=76.6

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++|+||+......           . ..    .+..+++++. .++..++.     ......+...+..++.|++.
T Consensus        73 ~l~~l~h~~iv~~~~~~-----------~-~~----~~~lv~e~~~~~~L~~~l~-----~~~~~~~~~~~~~i~~qi~~  131 (289)
T 3og7_A           73 VLRKTRHVNILLFMGYS-----------T-AP----QLAIVTQWCEGSSLYHHLH-----ASETKFEMKKLIDIARQTAR  131 (289)
T ss_dssp             HHTTCCCTTBCCEEEEE-----------C-SS----SCEEEEECCCEEEHHHHHT-----TC---CCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcEEEEEeec-----------c-CC----ccEEEEEecCCCcHHHHHh-----hccCCCCHHHHHHHHHHHHH
Confidence            68889999999544311           1 11    1678899987 45544442     22334788899999999999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      ++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..    .........+|..|+||
T Consensus       132 ~L~~lH~~~i~H~Dlk-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (289)
T 3og7_A          132 GMDYLHAKSIIHRDLK-----SNNIFLHE-DNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP  191 (289)
T ss_dssp             HHHHHHHTTCCCSCCC-----GGGEEEET-TTEEEECCCC------------------CCCTTCCH
T ss_pred             HHHHHHhCCcccccCc-----cceEEECC-CCCEEEccceeccccccccccccccccCCCccccCc
Confidence            9999 99999999999     99999975 489999999998732    12334567889999997

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.80  E-value=1.3e-10  Score=117.27  Aligned_cols=93  Identities=23%  Similarity=0.329  Sum_probs=74.2

Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC---------
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE---------  479 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~---------  479 (512)
                      ++.++|+|..++..++.-.    .....+...+..++.|++.+|.+ |..+|+|+|||     |+||++..         
T Consensus        97 ~~lv~e~~~~~l~~~l~~~----~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlk-----p~NIll~~~~~~~~~~~  167 (355)
T 2eu9_A           97 MCIAFELLGKNTFEFLKEN----NFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLK-----PENILFVNSEFETLYNE  167 (355)
T ss_dssp             EEEEEECCCCBHHHHHHHT----TTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----GGGEEESCCCEEEEECC
T ss_pred             EEEEEeccCCChHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----HHHEEEecccccccccc
Confidence            7889999988876665321    11347888999999999999999 99999999999     99999942         


Q ss_pred             ---------CCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        480 ---------SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       480 ---------~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                               ..+.+|++|||+++.... ..+..++|+.|+||
T Consensus       168 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~-~~~~~~gt~~y~aP  208 (355)
T 2eu9_A          168 HKSCEEKSVKNTSIRVADFGSATFDHE-HHTTIVATRHYRPP  208 (355)
T ss_dssp             C-CCCEEEESCCCEEECCCTTCEETTS-CCCSSCSCGGGCCH
T ss_pred             cccccccccCCCcEEEeecCccccccc-cccCCcCCCcccCC
Confidence                     247899999999974322 23456899999998

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=98.80  E-value=7e-10  Score=107.57  Aligned_cols=136  Identities=8%  Similarity=-0.047  Sum_probs=92.6

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+............ .+|  +++.++||||++..+.|.          ...   .-.++.++|++.. ++..++.
T Consensus        35 ~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~---~~~~~lv~e~~~~~~L~~~l~  101 (271)
T 3kmu_A           35 DIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQ----------SPP---APHPTLITHWMPYGSLYNVLH  101 (271)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEEC----------TTT---SSSCEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEc----------cCC---CCCeEeeecccCCCcHHHHHh
Confidence            6788876542211111111 233  577789999997766551          111   1126789999984 7766664


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCe
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPY  503 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~y  503 (512)
                      -.    .....+...+..++.|++.++.+ |..+  |+|+|||     |+||++.. .+..+++|||++.....   ...
T Consensus       102 ~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dik-----p~Nil~~~-~~~~~l~~~~~~~~~~~---~~~  168 (271)
T 3kmu_A          102 EG----TNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALN-----SRSVMIDE-DMTARISMADVKFSFQS---PGR  168 (271)
T ss_dssp             SC----SSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCS-----GGGEEECT-TSCEEEEGGGSCCTTSC---TTC
T ss_pred             hc----ccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCc-----cceEEEcC-CcceeEEeccceeeecc---cCc
Confidence            21    11236888999999999999999 9999  9999999     99999975 47788887777653221   235


Q ss_pred             eeeeeeccC
Q psy17422        504 LVSRFYRAP  512 (512)
Q Consensus       504 v~tr~YraP  512 (512)
                      ++|..|+||
T Consensus       169 ~~t~~y~aP  177 (271)
T 3kmu_A          169 MYAPAWVAP  177 (271)
T ss_dssp             BSCGGGSCH
T ss_pred             cCCccccCh
Confidence            678889987

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.80  E-value=8.9e-11  Score=119.86  Aligned_cols=151  Identities=19%  Similarity=0.239  Sum_probs=102.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC-----------CCCCCcCCchhhhhHHhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA-----------CVNLTSKSEPFWILAKAV  396 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~-----------~~ni~~~~~~fw~l~~al  396 (512)
                      +.|+++.+..+|.       .+|+|.+.....   .... .+|  +++.++           |+||+...+.|.      
T Consensus        33 g~V~~~~~~~~~~-------~vaiK~~~~~~~---~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~------   96 (373)
T 1q8y_A           33 STVWLAKDMVNNT-------HVAMKIVRGDKV---YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN------   96 (373)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSCHH---HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE------
T ss_pred             eEEEEEEecCCCc-------EEEEEEecCCcc---chhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh------
Confidence            5677777777776       788887652110   0011 122  333333           788887766552      


Q ss_pred             hhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCC-CCChHHHHhhcccccc
Q psy17422        397 KDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSS-AITEAQVKLFCRNASF  474 (512)
Q Consensus       397 k~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~-~I~hrdIK~Fc~n~~n  474 (512)
                           ..+.+...+..+++++..++..++.-.    .....+...+..++.|++.++.+ |.+ +|+|+|||     |+|
T Consensus        97 -----~~~~~~~~~~lv~e~~~~~L~~~~~~~----~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dik-----p~N  162 (373)
T 1q8y_A           97 -----HKGPNGVHVVMVFEVLGENLLALIKKY----EHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIK-----PEN  162 (373)
T ss_dssp             -----EEETTEEEEEEEECCCCEEHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCS-----GGG
T ss_pred             -----ccCCCCceEEEEEecCCCCHHHHHHHh----hccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCC-----hHH
Confidence                 111112236788888877776666421    12347888999999999999999 998 99999999     999


Q ss_pred             ccccC-----CCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        475 IHVNE-----SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       475 Ill~~-----~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++..     ..+.+|++|||+++.... ..+..++|+.|+||
T Consensus       163 Ill~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~t~~y~aP  204 (373)
T 1q8y_A          163 VLMEIVDSPENLIQIKIADLGNACWYDE-HYTNSIQTREYRSP  204 (373)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTCEETTB-CCCSCCSCGGGCCH
T ss_pred             eEEeccCCCcCcceEEEcccccccccCC-CCCCCCCCccccCc
Confidence            99952     224799999999874332 24456889999998

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=98.80  E-value=4.6e-10  Score=112.17  Aligned_cols=132  Identities=17%  Similarity=0.145  Sum_probs=87.8

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+...    ..... .+|  +++.++||||++..+.+.          +       +++.+++++. .++..++.
T Consensus        33 ~vavK~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----------~-------~~~lv~e~~~~~~L~~~l~   91 (307)
T 2eva_A           33 DVAIKQIESE----SERKAFIVELRQLSRVNHPNIVKLYGACL----------N-------PVCLVMEYAEGGSLYNVLH   91 (307)
T ss_dssp             EEEEEECSST----THHHHHHHHHHHHHHCCCTTBCCEEEBCT----------T-------TTEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEecCh----hHHHHHHHHHHHHhcCCCCCcCeEEEEEc----------C-------CcEEEEEcCCCCCHHHHHh
Confidence            6788876421    11122 334  688899999997655441          1       2678999997 47666654


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CC---CCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS---SAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~---~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~  502 (512)
                      -..   .....+...+..++.|++.++.+ |.   ++|+|+|||     |+||++......+|++|||+++.... ..+.
T Consensus        92 ~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlk-----p~NIll~~~~~~~kl~Dfg~~~~~~~-~~~~  162 (307)
T 2eva_A           92 GAE---PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLK-----PPNLLLVAGGTVLKICDFGTACDIQT-HMTN  162 (307)
T ss_dssp             CSS---SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCS-----GGGEEEETTTTEEEECCCCC-----------
T ss_pred             ccC---CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCC-----hhHEEEeCCCCEEEEccccccccccc-cccc
Confidence            211   11235778888999999999999 88   899999999     99999976544689999999874322 2344


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       163 ~~gt~~y~aP  172 (307)
T 2eva_A          163 NKGSAAWMAP  172 (307)
T ss_dssp             --CCTTSSCH
T ss_pred             CCCCCceECh
Confidence            5789999987

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.79  E-value=3.1e-10  Score=110.14  Aligned_cols=133  Identities=14%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+......   ... .+|  +++.++||||++..+.|.           ..    -.++.++|++. .++..++.
T Consensus        34 ~vaiK~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~~----~~~~lv~e~~~~~~L~~~~~   95 (267)
T 3t9t_A           34 KVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCL-----------EQ----APICLVTEFMEHGCLSDYLR   95 (267)
T ss_dssp             EEEEEEECTTTBC---HHHHHHHHHHHHTCCCTTBCCEEEEEC-----------SS----SSCEEEECCCTTCBHHHHHH
T ss_pred             eEEEEEccccCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEc-----------cC----CCeEEEEeCCCCCcHHHHHh
Confidence            6788876542211   122 344  688899999997666551           11    13788999997 46666664


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC---CCccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE---NEITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~---~~~t~  502 (512)
                      -.     ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++....   .....
T Consensus        96 ~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----p~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~  164 (267)
T 3t9t_A           96 TQ-----RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA-----ARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTG  164 (267)
T ss_dssp             HT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC-----GGGEEECG-GGCEEECCTTGGGGBCCHHHHSTTS
T ss_pred             hC-----cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCc-----hheEEECC-CCCEEEccccccccccccccccccc
Confidence            22     2346888899999999999999 99999999999     99999965 48899999999873321   11233


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       165 ~~~~~~y~aP  174 (267)
T 3t9t_A          165 TKFPVKWASP  174 (267)
T ss_dssp             TTCCGGGCCH
T ss_pred             ccccccccCh
Confidence            4556678877

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.79  E-value=2.8e-10  Score=112.25  Aligned_cols=135  Identities=9%  Similarity=0.049  Sum_probs=93.4

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHHh
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIAL  427 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~L  427 (512)
                      .+|+|.+...........-.+|  ++..++||||++..+.+           +. +    .++.+++++.. ++..++. 
T Consensus        39 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~-~----~~~lv~e~~~~~~L~~~l~-  101 (287)
T 1u59_A           39 DVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-----------QA-E----ALMLVMEMAGGGPLHKFLV-  101 (287)
T ss_dssp             EEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ES-S----SEEEEEECCTTEEHHHHHT-
T ss_pred             eEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-----------cC-C----CcEEEEEeCCCCCHHHHHH-
Confidence            6888877543111111111233  68888999999765544           11 1    27789999975 5555543 


Q ss_pred             HHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--CC---Ccc
Q psy17422        428 QQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--EN---EIT  501 (512)
Q Consensus       428 ~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~~---~~t  501 (512)
                          ......+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++...  ..   ...
T Consensus       102 ----~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----p~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~  171 (287)
T 1u59_A          102 ----GKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLA-----ARNVLLVN-RHYAKISDFGLSKALGADDSYYTARS  171 (287)
T ss_dssp             ----TCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEEE-TTEEEECCCTTCEECTTCSCEECCCC
T ss_pred             ----hCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCc-----hheEEEcC-CCCEEECcccceeeeccCcceeeccc
Confidence                122347888999999999999999 99999999999     99999975 4899999999987321  11   122


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ...+|..|+||
T Consensus       172 ~~~~~~~y~aP  182 (287)
T 1u59_A          172 AGKWPLKWYAP  182 (287)
T ss_dssp             SSCCCGGGCCH
T ss_pred             cccccccccCH
Confidence            33457788887

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=98.78  E-value=4.7e-10  Score=109.87  Aligned_cols=133  Identities=16%  Similarity=0.180  Sum_probs=93.3

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+....   .-... .+|  +++.++||||++..+.+           .. +    .++.+++++. .++..++.
T Consensus        39 ~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----------~~-~----~~~~v~e~~~~~~L~~~l~   99 (279)
T 1qpc_A           39 KVAVKSLKQGS---MSPDAFLAEANLMKQLQHQRLVRLYAVV-----------TQ-E----PIYIITEYMENGSLVDFLK   99 (279)
T ss_dssp             EEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CS-S----SCEEEEECCTTCBHHHHTT
T ss_pred             EEEEEEecCCc---ccHHHHHHHHHHHHhCCCcCcceEEEEE-----------cC-C----CcEEEEecCCCCCHHHHHh
Confidence            57888765321   11222 334  68889999999765543           11 1    2678999996 56666654


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---CccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---EITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---~~t~  502 (512)
                      -..    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....   ....
T Consensus       100 ~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik-----p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~  169 (279)
T 1qpc_A          100 TPS----GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR-----AANILVSD-TLSCKIADFGLARLIEDNEYTAREG  169 (279)
T ss_dssp             SHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TSCEEECCCTTCEECSSSCEECCTT
T ss_pred             cCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----HhhEEEcC-CCCEEECCCcccccccCcccccccC
Confidence            211    1247888999999999999999 99999999999     99999975 488999999998733221   1223


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       170 ~~~~~~y~aP  179 (279)
T 1qpc_A          170 AKFPIKWTAP  179 (279)
T ss_dssp             CCCCTTTSCH
T ss_pred             CCCccCccCh
Confidence            4556678887

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.76  E-value=4.1e-10  Score=121.89  Aligned_cols=133  Identities=17%  Similarity=0.173  Sum_probs=94.7

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+.....   -... .+|  +|+.++|+||++....+           ..     -+++.++++|.. ++..+++
T Consensus       293 ~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~-----------~~-----~~~~lv~e~~~~gsL~~~l~  353 (535)
T 2h8h_A          293 RVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV-----------SE-----EPIYIVTEYMSKGSLLDFLK  353 (535)
T ss_dssp             EEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CS-----SSCEEEECCCTTEEHHHHHS
T ss_pred             eEEEEEeCCCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEE-----------ee-----ccceEeeehhcCCcHHHHHh
Confidence            588888754221   1122 344  78999999999765543           11     237899999975 7777764


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCC---ccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE---ITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~---~t~  502 (512)
                      -.    .....+...+..++.|++.+|.| |.++|+|||||     |+||++.. .+.+|++|||+++......   ...
T Consensus       354 ~~----~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk-----p~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~  423 (535)
T 2h8h_A          354 GE----TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR-----AANILVGE-NLVCKVADFGLARLIEDNEYTARQG  423 (535)
T ss_dssp             HH----HHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEECCTTSTTTCCCHHHHTTCS
T ss_pred             hc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----HhhEEEcC-CCcEEEcccccceecCCCceecccC
Confidence            21    11236788899999999999999 99999999999     99999975 4789999999998433211   122


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..++..|+||
T Consensus       424 ~~~~~~y~aP  433 (535)
T 2h8h_A          424 AKFPIKWTAP  433 (535)
T ss_dssp             TTSCGGGSCH
T ss_pred             CcCcccccCH
Confidence            3345678876

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=98.76  E-value=9.1e-10  Score=110.78  Aligned_cols=149  Identities=17%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             cchhhhc----cccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIR----KDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~----~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      +.|+++.    ++.+|.       .+|+|.+....  ...... .+|  ++..++|+||++..+.++          .. 
T Consensus        55 g~V~~~~~~~~~~~~~~-------~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~-  114 (326)
T 2w1i_A           55 GSVEMCRYDPLQDNTGE-------VVAVKKLQHST--EEHLRDFEREIEILKSLQHDNIVKYKGVCY----------SA-  114 (326)
T ss_dssp             EEEEEEEECTTSSSCCE-------EEEEEEESSCC--SHHHHHHHHHHHHHHTCCCTTBCCEEEEEC----------C--
T ss_pred             eEEEEEEeccccCCCce-------EEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEE----------ec-
Confidence            4555555    344454       88998875421  111112 233  688899999997665542          11 


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                        +.-.++.+++++.. ++..++.-.     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .
T Consensus       115 --~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dik-----p~NIli~~-~  181 (326)
T 2w1i_A          115 --GRRNLKLIMEYLPYGSLRDYLQKH-----KERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA-----TRNILVEN-E  181 (326)
T ss_dssp             -----CCEEEECCCTTCBHHHHHHHS-----TTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEEEE-T
T ss_pred             --CCCceEEEEECCCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCC-----cceEEEcC-C
Confidence              11126789999974 766665421     2347888899999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCCC-----CccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHEN-----EITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~~-----~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+++.....     ......++..|+||
T Consensus       182 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  217 (326)
T 2w1i_A          182 NRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAP  217 (326)
T ss_dssp             TEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCH
T ss_pred             CcEEEecCcchhhccccccccccccCCCCceeEECc
Confidence            89999999998732211     12234566778887

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.73  E-value=1.4e-09  Score=106.75  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             HhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHH
Q psy17422        351 EEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv  425 (512)
                      .+|+|.+....... ..... .+|  +++.++||||++..+.+.           .  .   ..+.+++++. .++..++
T Consensus        48 ~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----------~--~---~~~~v~e~~~~~~L~~~l  111 (291)
T 1u46_A           48 SVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-----------T--P---PMKMVTELAPLGSLLDRL  111 (291)
T ss_dssp             EEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------S--S---SCEEEEECCTTCBHHHHH
T ss_pred             EEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEc-----------c--C---CceeeEecccCCCHHHHH
Confidence            46888765432111 11111 233  678889999997766551           1  1   1668889887 5666665


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC-----C
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN-----E  499 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~-----~  499 (512)
                      .-.     +...+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++.....     .
T Consensus       112 ~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik-----p~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~  180 (291)
T 1u46_A          112 RKH-----QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA-----ARNLLLAT-RDLVKIGDFGLMRALPQNDDHYVM  180 (291)
T ss_dssp             HHH-----GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEEEE-TTEEEECCCTTCEECCC-CCEEEC
T ss_pred             Hhc-----cCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCc-----hheEEEcC-CCCEEEccccccccccccccchhh
Confidence            422     2347788999999999999999 99999999999     99999975 489999999998732211     1


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....+|..|+||
T Consensus       181 ~~~~~~~~~y~aP  193 (291)
T 1u46_A          181 QEHRKVPFAWCAP  193 (291)
T ss_dssp             -----CCGGGCCH
T ss_pred             hccCCCCceeeCc
Confidence            2344567788887

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=98.71  E-value=7.1e-10  Score=108.61  Aligned_cols=133  Identities=15%  Similarity=0.173  Sum_probs=88.1

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+...    ..... .+|  +++.++||||++..+.++          +..+    .++.++|++.. ++..++.
T Consensus        46 ~vavK~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~----~~~lv~e~~~~~~L~~~l~  107 (278)
T 1byg_A           46 KVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIV----------EEKG----GLYIVTEYMAKGSLVDYLR  107 (278)
T ss_dssp             EEEEEECCCC----C--HHHHHTHHHHTTCCCTTBCCEEEEEC----------CC------CCEEEECCCTTEEHHHHHH
T ss_pred             EEEEEEecch----hHHHHHHHHHHHHHhCCCCCEeeEEEEEE----------cCCC----ceEEEEecCCCCCHHHHHH
Confidence            6788776432    22222 333  688899999997665541          1111    26789999975 7777764


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCCCccCeee
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPYLV  505 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~~~t~yv~  505 (512)
                      -..    ....+...+..++.|++.++.+ |..+|+|+|||     |+||++.. .+.+|++|||+++..... .....+
T Consensus       108 ~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----p~Nil~~~-~~~~~l~Dfg~~~~~~~~-~~~~~~  176 (278)
T 1byg_A          108 SRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA-----ARNVLVSE-DNVAKVSDFGLTKEASST-QDTGKL  176 (278)
T ss_dssp             HHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECT-TSCEEECCCCC-------------C
T ss_pred             hcc----cccCCHHHHHHHHHHHHHHHHHHHhCCccccCCC-----cceEEEeC-CCcEEEeecccccccccc-ccCCCc
Confidence            321    1125777889999999999999 99999999999     99999975 488999999998743221 123355


Q ss_pred             eeeeccC
Q psy17422        506 SRFYRAP  512 (512)
Q Consensus       506 tr~YraP  512 (512)
                      +..|+||
T Consensus       177 ~~~y~aP  183 (278)
T 1byg_A          177 PVKWTAP  183 (278)
T ss_dssp             CTTTSCH
T ss_pred             cccccCH
Confidence            6778887

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.71  E-value=9.2e-10  Score=109.86  Aligned_cols=146  Identities=16%  Similarity=0.086  Sum_probs=93.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCC--CCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNA--CVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~--~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      +.|+++.+.. |.       .+|+|.+............ .+|  ++..++  |+||+...+.+           ...+ 
T Consensus        42 g~Vy~~~~~~-~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~-----------~~~~-  101 (313)
T 3cek_A           42 SKVFQVLNEK-KQ-------IYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE-----------ITDQ-  101 (313)
T ss_dssp             EEEEEEECTT-CC-------EEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE-----------ECSS-
T ss_pred             EEEEEEEcCC-Cc-------EEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe-----------ecCC-
Confidence            4555555432 44       6888877542211111111 233  455555  58998765544           1111 


Q ss_pred             CCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        406 GNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       406 ~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                         .++.+++....++..++.      .....+...+..++.|++.++.+ |..+|+|+|||     |+||++.  .+.+
T Consensus       102 ---~~~lv~e~~~~~L~~~l~------~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-----p~NIl~~--~~~~  165 (313)
T 3cek_A          102 ---YIYMVMECGNIDLNSWLK------KKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK-----PANFLIV--DGML  165 (313)
T ss_dssp             ---EEEEEECCCSEEHHHHHH------HCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEEE--TTEE
T ss_pred             ---EEEEEEecCCCcHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----cccEEEE--CCeE
Confidence               267788865566666654      33457888899999999999999 99999999999     9999995  3789


Q ss_pred             EEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                      |++|||+++....    ......++|..|+||
T Consensus       166 kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (313)
T 3cek_A          166 KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP  197 (313)
T ss_dssp             EECCCSSSCC--------------CCGGGCCH
T ss_pred             EEeeccccccccCccccccccCCCCCCCcCCH
Confidence            9999999874321    122356789999998

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=98.70  E-value=9.1e-10  Score=115.13  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=72.8

Q ss_pred             cceeEEeccccCChHHHHHhHHhhh-hccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYR-DQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~-~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..+...+|.+.+++..+++...... .....+......++.|++.+|.| |..+|+|||||     |+||++... +.+|
T Consensus       178 ~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiK-----p~NILl~~~-~~~k  251 (413)
T 3dzo_A          178 LSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLR-----PVDIVLDQR-GGVF  251 (413)
T ss_dssp             CSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECTT-CCEE
T ss_pred             cceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcc-----cceEEEecC-CeEE
Confidence            3467778888888888875332211 12224455677788999999999 99999999999     999999754 7899


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++..... .+..++ ..|+||
T Consensus       252 L~DFG~a~~~~~~-~~~~~g-~~y~aP  276 (413)
T 3dzo_A          252 LTGFEHLVRDGAS-AVSPIG-RGFAPP  276 (413)
T ss_dssp             ECCGGGCEETTEE-ECCCCC-TTTCCH
T ss_pred             EEeccceeecCCc-cccCCC-CceeCc
Confidence            9999998743322 455677 899998

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.68  E-value=1.7e-09  Score=107.47  Aligned_cols=134  Identities=15%  Similarity=0.117  Sum_probs=96.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      +.|+++.+..+|.       .+|+|.+...   .....++..+++..+||||++..+.|.       .+.    .+.-.+
T Consensus        32 g~V~~~~~~~~~~-------~vaiK~~~~~---~~~~~e~~~~~~~~~h~~i~~~~~~~~-------~~~----~~~~~~   90 (299)
T 3m2w_A           32 GKVLQIFNKRTQE-------KFALKMLQDC---PKARREVELHWRASQCPHIVRIVDVYE-------NLY----AGRKCL   90 (299)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECS---HHHHHHHHHHHHHTTSTTBCCEEEEEE-------EEE----TTEEEE
T ss_pred             eEEEEEEEcCCCc-------EEEEEEeccc---HHHHHHHHHHHHhccCCCchhHHhhhh-------hhc----CCCceE
Confidence            6678888887777       8899987531   111112222457779999997766551       011    111237


Q ss_pred             eEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCeEEE
Q psy17422        411 RGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLVLKL  486 (512)
Q Consensus       411 ~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~~Kl  486 (512)
                      +.++|++.. ++..++.-.    .....+...+..++.|++.++.+ |..+|+|+|||     |+||++...  .+.+|+
T Consensus        91 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk-----p~Nil~~~~~~~~~~kl  161 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDR----GDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK-----PENLLYTSKRPNAILKL  161 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHC----TTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESSSSTTCCEEE
T ss_pred             EEEEeecCCCcHHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----HHHEEEecCCCCCcEEE
Confidence            889999975 776666431    11247888999999999999999 99999999999     999999753  478999


Q ss_pred             ecCCCCCC
Q psy17422        487 CDFGSASW  494 (512)
Q Consensus       487 ~DfGlar~  494 (512)
                      +|||+++.
T Consensus       162 ~Dfg~a~~  169 (299)
T 3m2w_A          162 TDFGFAKE  169 (299)
T ss_dssp             CCCTTCEE
T ss_pred             eccccccc
Confidence            99999863

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.66  E-value=1.9e-09  Score=107.41  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=91.8

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.+............ .+|  +++.++|+||+...+.+.           ..+    .++.+++++.. ++..++.
T Consensus        57 ~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----------~~~----~~~iv~e~~~~~~L~~~l~  121 (319)
T 2y4i_B           57 EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM-----------SPP----HLAIITSLCKGRTLYSVVR  121 (319)
T ss_dssp             SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEE-----------CSS----CEEEECBCCCSEEHHHHTT
T ss_pred             eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----------cCC----ceEEEeecccCCcHHHHHH
Confidence            4677776543222211111 223  578889999998766551           111    27788999874 5544442


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC-------CCC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS-------HEN  498 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~-------~~~  498 (512)
                      -     .+...+...+..++.|++.++.+ |..+|+|+|||     |+||++.  .+.+|++|||+++..       ...
T Consensus       122 ~-----~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlk-----p~NIl~~--~~~~~l~Dfg~~~~~~~~~~~~~~~  189 (319)
T 2y4i_B          122 D-----AKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLK-----SKNVFYD--NGKVVITDFGLFSISGVLQAGRRED  189 (319)
T ss_dssp             S-----SCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----STTEEEC----CCEECCCSCCC----------CC
T ss_pred             h-----cCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC-----hhhEEEe--CCCEEEeecCCcccccccccccccc
Confidence            1     12347888999999999999999 99999999999     9999996  478999999997621       122


Q ss_pred             CccCeeeeeeeccC
Q psy17422        499 EITPYLVSRFYRAP  512 (512)
Q Consensus       499 ~~t~yv~tr~YraP  512 (512)
                      ......+|..|+||
T Consensus       190 ~~~~~~g~~~y~aP  203 (319)
T 2y4i_B          190 KLRIQNGWLCHLAP  203 (319)
T ss_dssp             SCBCCSGGGGTSCH
T ss_pred             ccccCCCcccccCh
Confidence            34455688889887

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.62  E-value=2.9e-10  Score=123.33  Aligned_cols=103  Identities=13%  Similarity=0.016  Sum_probs=77.3

Q ss_pred             HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHH
Q psy17422        373 ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLH  451 (512)
Q Consensus       373 ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~  451 (512)
                      +++.++||||+.....+.          . . .   ..+.+||+|. .++.+++.-              +..++.|++.
T Consensus       392 il~~l~h~nIv~~~~~~~----------~-~-~---~~~lVmE~~~ggsL~~~l~~--------------~~~i~~qi~~  442 (540)
T 3en9_A          392 YLALVKDFGIPAPYIFDV----------D-L-D---NKRIMMSYINGKLAKDVIED--------------NLDIAYKIGE  442 (540)
T ss_dssp             HHHHGGGGTCCCCCEEEE----------E-T-T---TTEEEEECCCSEEHHHHSTT--------------CTHHHHHHHH
T ss_pred             HHHhcCCCCcCceEEEEE----------e-C-C---ccEEEEECCCCCCHHHHHHH--------------HHHHHHHHHH
Confidence            688889999995432220          1 1 1   1578999997 565555431              4468899999


Q ss_pred             HhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCCC---------CccCeeeeeeeccC
Q psy17422        452 QLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHEN---------EITPYLVSRFYRAP  512 (512)
Q Consensus       452 ~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~~---------~~t~yv~tr~YraP  512 (512)
                      ++.| |.++|+|||||     |+||++..   .+|++|||+++.....         ....+++|.+|+||
T Consensus       443 aL~~LH~~gIiHrDiK-----p~NILl~~---~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~AP  505 (540)
T 3en9_A          443 IVGKLHKNDVIHNDLT-----TSNFIFDK---DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFD  505 (540)
T ss_dssp             HHHHHHHTTEECTTCC-----TTSEEESS---SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHCcCccCCCC-----HHHEEECC---eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCH
Confidence            9999 99999999999     99999975   8999999999843221         12467899999998

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=98.47  E-value=2.2e-08  Score=99.29  Aligned_cols=126  Identities=8%  Similarity=-0.090  Sum_probs=89.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .+|  ++..++|+||++..+.|           ...+  
T Consensus        45 g~Vy~a~~~~~~~-------~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~-----------~~~~--  104 (286)
T 3uqc_A           45 LQFWQALDTALDR-------QVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVV-----------HTRA--  104 (286)
T ss_dssp             CEEEEEEETTTTE-------EEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------EETT--
T ss_pred             eEEEEEEecCCCc-------eEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEE-----------EECC--
Confidence            5677777777676       88999886543211 00012 333  57888999999876655           1111  


Q ss_pred             CcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+|+++. .++..+++      .  ......+..++.|++.+|.+ |..+|+|+|||     |+||++.. .+.+
T Consensus       105 --~~~lv~e~~~g~~L~~~l~------~--~~~~~~~~~i~~ql~~aL~~lH~~givH~Dik-----p~NIll~~-~g~~  168 (286)
T 3uqc_A          105 --GGLVVAEWIRGGSLQEVAD------T--SPSPVGAIRAMQSLAAAADAAHRAGVALSIDH-----PSRVRVSI-DGDV  168 (286)
T ss_dssp             --EEEEEEECCCEEEHHHHHT------T--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----GGGEEEET-TSCE
T ss_pred             --cEEEEEEecCCCCHHHHHh------c--CCChHHHHHHHHHHHHHHHHHHHCCCccCCCC-----cccEEEcC-CCCE
Confidence              2789999997 45555542      2  13555678899999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCC
Q psy17422        485 KLCDFGSA  492 (512)
Q Consensus       485 Kl~DfGla  492 (512)
                      |++++|..
T Consensus       169 kl~~~~~~  176 (286)
T 3uqc_A          169 VLAYPATM  176 (286)
T ss_dssp             EECSCCCC
T ss_pred             EEEecccc
Confidence            99977753

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=97.96  E-value=4.1e-07  Score=90.13  Aligned_cols=65  Identities=11%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             eeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        410 LRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       410 l~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ++.+|++|.. ++.. +.            ......++.|++.++.+ |..+|+|+|||     |+||++.  .+.+|++
T Consensus       175 ~~lvmE~~~g~~L~~-l~------------~~~~~~i~~qi~~~l~~lH~~giiHrDlk-----p~NILl~--~~~vkl~  234 (282)
T 1zar_A          175 NAVLMELIDAKELYR-VR------------VENPDEVLDMILEEVAKFYHRGIVHGDLS-----QYNVLVS--EEGIWII  234 (282)
T ss_dssp             TEEEEECCCCEEGGG-CC------------CSCHHHHHHHHHHHHHHHHHTTEECSCCS-----TTSEEEE--TTEEEEC
T ss_pred             eEEEEEecCCCcHHH-cc------------hhhHHHHHHHHHHHHHHHHHCCCEeCCCC-----HHHEEEE--CCcEEEE
Confidence            5789999975 4433 21            12345688999999999 99999999999     9999998  5899999


Q ss_pred             cCCCCCC
Q psy17422        488 DFGSASW  494 (512)
Q Consensus       488 DfGlar~  494 (512)
                      |||+|+.
T Consensus       235 DFG~a~~  241 (282)
T 1zar_A          235 DFPQSVE  241 (282)
T ss_dssp             CCTTCEE
T ss_pred             ECCCCeE
Confidence            9999974

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.49  E-value=0.00023  Score=70.44  Aligned_cols=78  Identities=18%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|+..|+++++|++.+                   ..|++.+++.+...++.+++.....
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~~  185 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVDA  185 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcCH
Confidence            567899999999999999999999999999998665                   3588899999998888777765531


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                        .    ...+.+.++|+||++.
T Consensus       186 --~----~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          186 --R----GIEDVIAAADGVVNAT  202 (283)
T ss_dssp             --T----THHHHHHHSSEEEECS
T ss_pred             --H----HHHHHHhcCCEEEECC
Confidence              1    1124567899999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.18  E-value=0.0005  Score=65.62  Aligned_cols=36  Identities=14%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|++.+|+|||+|.+|...++.|..+|. ++++++.+
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            3788999999999999999999999997 69999875

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=96.94  E-value=0.00013  Score=70.80  Aligned_cols=47  Identities=11%  Similarity=0.068  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhCC-C-CCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        440 DVIYRRAQQLLHQLGQ-P-SSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       440 ~~v~~~~~qlL~~l~~-h-~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      ..+..++.|++.++.+ | ..+|+|+|+|     |+||++..   .++++|||+|..
T Consensus       170 ~~~~~i~~qi~~~l~~lH~~~givHrDlk-----p~NILl~~---~~~liDFG~a~~  218 (258)
T 1zth_A          170 LDVEGIFNDVVENVKRLYQEAELVHADLS-----EYNIMYID---KVYFIDMGQAVT  218 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTSCEECSSCS-----TTSEEESS---SEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEeCCCC-----HHHEEEcC---cEEEEECccccc
Confidence            3566788999999999 9 9999999999     99999974   789999999873

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.85  E-value=0.0036  Score=62.75  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|+..|+++|+|++.+.                --..||+.+++.+.+..+ +.+....-
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~~~~~~  214 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKAQLFDI  214 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC----------------chHHHHHHHHHHhhhhcC-CceEEecc
Confidence            4678999999999999999999999999999986541                002578888888887654 45544321


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .-.   +...+.+.++|+||++.
T Consensus       215 ~~~---~~l~~~l~~aDiIINaT  234 (315)
T 3tnl_A          215 EDH---EQLRKEIAESVIFTNAT  234 (315)
T ss_dssp             TCH---HHHHHHHHTCSEEEECS
T ss_pred             chH---HHHHhhhcCCCEEEECc
Confidence            100   00123456899999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.72  E-value=0.0048  Score=60.86  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=53.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|...|+.++++++.+                   ..|++.+++.+....   .+.... 
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~---~~~~~~-  180 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG---EVKAQA-  180 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE-
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC---CeeEee-
Confidence            457899999999999999999999999999998764                   247777777776542   222221 


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                       +.       +...++|+||++.
T Consensus       181 -~~-------~l~~~aDiIInaT  195 (281)
T 3o8q_A          181 -FE-------QLKQSYDVIINST  195 (281)
T ss_dssp             -GG-------GCCSCEEEEEECS
T ss_pred             -HH-------HhcCCCCEEEEcC
Confidence             11       1226899999973

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.62  E-value=0.0077  Score=53.39  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .++...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~   51 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKN   51 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            45677899999999999999999999997 79999876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.60  E-value=0.0054  Score=50.94  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4589999999999999999999996679998865

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.55  E-value=0.012  Score=58.94  Aligned_cols=83  Identities=14%  Similarity=0.151  Sum_probs=57.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|...|+++|+|++.+.                -...||+.+++.+....+ +.+.....
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~----------------~~~~~a~~la~~~~~~~~-~~v~~~~~  208 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD----------------DFFEKAVAFAKRVNENTD-CVVTVTDL  208 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------THHHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC----------------chHHHHHHHHHHhhhccC-cceEEech
Confidence            4578999999999999999999999999999986540                002578888888877543 34443321


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .-.   +...+.+.++|+||++.
T Consensus       209 ~~l---~~~~~~l~~~DiIINaT  228 (312)
T 3t4e_A          209 ADQ---HAFTEALASADILTNGT  228 (312)
T ss_dssp             TCH---HHHHHHHHHCSEEEECS
T ss_pred             Hhh---hhhHhhccCceEEEECC
Confidence            100   00124467899999873

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.46  E-value=0.0065  Score=59.62  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=51.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ++.++|+|+|+||+|..++..|...|+.++++++.+                   ..|++.+++.+..    ..+...  
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~----~~~~~~--  172 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD-------------------MAKALALRNELDH----SRLRIS--  172 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHCC----TTEEEE--
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhcc----CCeeEe--
Confidence            456799999999999999999999999999998654                   2477777776654    123332  


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .+.   +.. +  .++|+||++.
T Consensus       173 ~~~---~l~-~--~~~DivInaT  189 (272)
T 3pwz_A          173 RYE---ALE-G--QSFDIVVNAT  189 (272)
T ss_dssp             CSG---GGT-T--CCCSEEEECS
T ss_pred             eHH---Hhc-c--cCCCEEEECC
Confidence            122   111 1  6899999973

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.34  E-value=0.015  Score=50.26  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~   38 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKS   38 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            456799999999999999999999998 59999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.30  E-value=0.029  Score=48.10  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~   38 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   38 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4667899999999999999999999997 58888865

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.04  E-value=0.023  Score=48.57  Aligned_cols=32  Identities=25%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            589999999999999999999996 69999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.04  E-value=0.014  Score=61.57  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |++.+|+|+|.|.+|...++.|...|. +++++|.+
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~   44 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT   44 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCC
Confidence            578899999999999999999999996 69999975

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.97  E-value=0.013  Score=58.23  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..++|+|+|+|++|..++..|...|+.+++++|.+
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            457899999999999999999999999999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.93  E-value=0.024  Score=49.93  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            56799999999999999999999997 59999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.91  E-value=0.013  Score=57.42  Aligned_cols=36  Identities=28%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      |++.+|+|+|+|.+|...++.|...|. ++++||.+.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence            578999999999999999999999996 599998763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.56  E-value=0.076  Score=51.82  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.++|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            567899999999999999999999999 89998765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.53  E-value=0.031  Score=52.31  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|+|+|.+|..+++.|...|. .++++|.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            79999999999999999999998 59999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.29  E-value=0.04  Score=53.85  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .++|+|+|+||.|..++..|...| .++++++.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            689999999999999999999999 899998654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.22  E-value=0.044  Score=55.05  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=52.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC----CCCeE
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN----PDCQG   84 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln----p~v~i   84 (512)
                      +|+..||.|+|+|.+|+.++..|+..|.++++++|-+.                   .|++..+..|...+    ..+++
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v   64 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE-------------------GTPQGKGLDIAESSPVDGFDAKF   64 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHHTCCCCE
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc-------------------hhHHHHHHHHhchhhhcCCCCEE
Confidence            36778999999999999999999999987899998651                   23433344454433    23444


Q ss_pred             EEEeCCCcccccCCcccccccceEEecC
Q psy17422         85 DFVDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      ....         +.+-++++|+||.+.
T Consensus        65 ~~t~---------d~~a~~~aDiVIiaa   83 (324)
T 3gvi_A           65 TGAN---------DYAAIEGADVVIVTA   83 (324)
T ss_dssp             EEES---------SGGGGTTCSEEEECC
T ss_pred             EEeC---------CHHHHCCCCEEEEcc
Confidence            4322         224578999999973

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.21  E-value=0.033  Score=56.66  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=25.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.||+|+|+|.+|..+++.|...  ..++++|-+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~   47 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVN   47 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESC
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcC
Confidence            456799999999999999998653  467777644

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.15  E-value=0.099  Score=47.24  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhc-CCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLP-GVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~-Gv~~itiiD~~   45 (512)
                      +.+.+|+|+|+|.+|..+++.|... |. .++++|.+
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~   72 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIR   72 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECC
Confidence            4467999999999999999999999 97 59999876

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.10  E-value=0.15  Score=50.27  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999997 68888755

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.90  E-value=0.05  Score=54.56  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=52.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh----CCCCeE
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL----NPDCQG   84 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l----np~v~i   84 (512)
                      .|...||.|+|+|.+|+.++..|+..|+++++++|-+.                   .|++..+..|...    ...+++
T Consensus         2 ~m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v   62 (321)
T 3p7m_A            2 AMARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKV   62 (321)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEE
Confidence            35567999999999999999999999988899998751                   2344444455543    224455


Q ss_pred             EEEeCCCcccccCCcccccccceEEecC
Q psy17422         85 DFVDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      ....         +.+-+++.|+||.+.
T Consensus        63 ~~t~---------d~~a~~~aDvVIi~a   81 (321)
T 3p7m_A           63 RGTN---------DYKDLENSDVVIVTA   81 (321)
T ss_dssp             EEES---------CGGGGTTCSEEEECC
T ss_pred             EEcC---------CHHHHCCCCEEEEcC
Confidence            4321         234577899999973

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.87  E-value=0.05  Score=56.30  Aligned_cols=47  Identities=19%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcC-C-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         13 ARICLINATGLGTEILKSLVLPG-V-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~G-v-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      .+|+|+|+|++|..+++.|+..| + ..++++|.+                   ..|++.+++.+...
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~-------------------~~~~~~la~~l~~~   50 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT-------------------LSKCQEIAQSIKAK   50 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC-------------------HHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC-------------------HHHHHHHHHHhhhh
Confidence            58999999999999999999988 3 589988765                   34677777777654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.80  E-value=0.2  Score=49.89  Aligned_cols=125  Identities=11%  Similarity=0.001  Sum_probs=74.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENP   91 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~   91 (512)
                      ..+|.|||+|.+|..++++|+..|..+++++|.+.-   ..             .|++...+.+.+.  .+     ..  
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~---~~-------------~~~~~~~~~~~~~--g~-----~~--   78 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN---DP-------------AASGALRARAAEL--GV-----EP--   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG---CT-------------TTHHHHHHHHHHT--TC-----EE--
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc---cc-------------cchHHHHHHHHHC--CC-----CC--
Confidence            367999999999999999999999547888876521   00             1333344444443  22     11  


Q ss_pred             cccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCcccc
Q psy17422         92 QVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFH  171 (512)
Q Consensus        92 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  171 (512)
                          ....+.+++.|+||.+--+..                .   ...+.                .+    ...++.-.
T Consensus        79 ----~s~~e~~~~aDvVi~avp~~~----------------~---~~~~~----------------~i----~~~l~~~~  115 (317)
T 4ezb_A           79 ----LDDVAGIACADVVLSLVVGAA----------------T---KAVAA----------------SA----APHLSDEA  115 (317)
T ss_dssp             ----ESSGGGGGGCSEEEECCCGGG----------------H---HHHHH----------------HH----GGGCCTTC
T ss_pred             ----CCHHHHHhcCCEEEEecCCHH----------------H---HHHHH----------------HH----HhhcCCCC
Confidence                023466778999998621110                0   00000                11    11233345


Q ss_pred             EEEEcC-CChHHHHHHHHHHHhCCCcEEEEeeec
Q psy17422        172 MVISTN-LPETTLIELSKTLWSLNIPLLACRSYG  204 (512)
Q Consensus       172 ~Vi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G  204 (512)
                      +||.++ .++.....+.+.+.+.++.++.+...|
T Consensus       116 ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g  149 (317)
T 4ezb_A          116 VFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMA  149 (317)
T ss_dssp             EEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECS
T ss_pred             EEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCC
Confidence            666654 667777788888777777777655554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.77  E-value=0.16  Score=50.44  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            35689999999999999999999998789998875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=94.73  E-value=0.16  Score=49.65  Aligned_cols=67  Identities=9%  Similarity=0.149  Sum_probs=53.1

Q ss_pred             HHHHhcCcEEEEc-CChHHHHHHHHHHhcCCC--eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCe
Q psy17422          7 QAALESARICLIN-ATGLGTEILKSLVLPGVG--SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQ   83 (512)
Q Consensus         7 Q~~L~~~~VlivG-~g~lg~ei~knLvl~Gv~--~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~   83 (512)
                      -..|+.++|+|.| .||+|.++++.|+..|.+  ++.++|.+                   ..+.+.+++.+.+.++..+
T Consensus        28 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~   88 (287)
T 3rku_A           28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFPNAK   88 (287)
T ss_dssp             HHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCTTCE
T ss_pred             hhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCCCCe
Confidence            3568889999998 679999999999999875  67777654                   2456777888888888888


Q ss_pred             EEEEeCCCc
Q psy17422         84 GDFVDENPQ   92 (512)
Q Consensus        84 i~~~~~~~~   92 (512)
                      +..+..++.
T Consensus        89 ~~~~~~Dv~   97 (287)
T 3rku_A           89 VHVAQLDIT   97 (287)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEECCCC
Confidence            887777765

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.71  E-value=0.064  Score=52.42  Aligned_cols=35  Identities=11%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..++|+|+|+||.|..++..|...|+++|+|++.+
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            35789999999999999999999999999998654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.55  E-value=0.099  Score=53.18  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -++..+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~   54 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLN   54 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3566789999999999999999999996 68888755

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.46  E-value=0.028  Score=59.23  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .||+|+|+|-+|..+++.|...|. .+++||.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d   35 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENN-DITIVDKD   35 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTE-EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            479999999999999999999996 69999988

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.29  E-value=0.26  Score=52.04  Aligned_cols=38  Identities=11%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             HHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          7 QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         7 Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+.+++|.|||+|..|+.++++|+..|. +++++|.+
T Consensus        10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~   47 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRS   47 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            356889999999999999999999999997 58887654

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=94.21  E-value=0.17  Score=50.37  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=49.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh----hCCCCeEEEEeC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE----LNPDCQGDFVDE   89 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~----lnp~v~i~~~~~   89 (512)
                      ||.|+|+|.+|+.++..|+..|+++++|+|-+                   ..|++..+..+..    .+..+++.....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~~i~~t~d   61 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART-------------------PGKPQGEALDLAHAAAELGVDIRISGSNS   61 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-------------------TTHHHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC-------------------hhhHHHHHHHHHHhhhhcCCCeEEEECCC
Confidence            68999999999999999999999669999865                   1233333344443    455666664321


Q ss_pred             CCcccccCCcccccccceEEec
Q psy17422         90 NPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                               .+=+++.|+||.+
T Consensus        62 ---------~~a~~~aD~Vi~~   74 (308)
T 2d4a_B           62 ---------YEDMRGSDIVLVT   74 (308)
T ss_dssp             ---------GGGGTTCSEEEEC
T ss_pred             ---------HHHhCCCCEEEEe
Confidence                     1337799999998

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.14  E-value=0.31  Score=45.57  Aligned_cols=39  Identities=13%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             HHHHHhcCcEEEEcC-ChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          6 GQAALESARICLINA-TGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         6 ~Q~~L~~~~VlivG~-g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -+..|++.+|+|.|+ |++|.++++.|+..|. ++++++.+
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~   54 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRN   54 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECC
Confidence            356789999999996 9999999999999997 68888754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.80  E-value=0.13  Score=50.97  Aligned_cols=122  Identities=16%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQ   92 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~   92 (512)
                      ++|.+||+|..|..+++||+..|. .+++.|.+                   +.|++    .+.+.  ...   ...+  
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~-------------------~~~~~----~l~~~--Ga~---~a~s--   52 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV-------------------QSAVD----GLVAA--GAS---AARS--   52 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS-------------------HHHHH----HHHHT--TCE---ECSS--
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCC-------------------HHHHH----HHHHc--CCE---EcCC--
Confidence            589999999999999999999997 58877643                   22333    33332  222   1122  


Q ss_pred             ccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccE
Q psy17422         93 VLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHM  172 (512)
Q Consensus        93 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  172 (512)
                           ..+..++.|+|+..=..                .  ......+.+.+                 ......+.=++
T Consensus        53 -----~~e~~~~~dvv~~~l~~----------------~--~~v~~V~~~~~-----------------g~~~~~~~g~i   92 (300)
T 3obb_A           53 -----ARDAVQGADVVISMLPA----------------S--QHVEGLYLDDD-----------------GLLAHIAPGTL   92 (300)
T ss_dssp             -----HHHHHTTCSEEEECCSC----------------H--HHHHHHHHSSS-----------------SSTTSCCC-CE
T ss_pred             -----HHHHHhcCCceeecCCc----------------h--HHHHHHHhchh-----------------hhhhcCCCCCE
Confidence                 34666778887764100                0  00000110000                 01122334466


Q ss_pred             EEEc-CCChHHHHHHHHHHHhCCCcEEEEeeece
Q psy17422        173 VIST-NLPETTLIELSKTLWSLNIPLLACRSYGF  205 (512)
Q Consensus       173 Vi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  205 (512)
                      ||++ +.+++...++.+.+.+.++-++++-++|-
T Consensus        93 iId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg  126 (300)
T 3obb_A           93 VLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  126 (300)
T ss_dssp             EEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC
T ss_pred             EEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC
Confidence            7765 57888889999999999999999888763

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.79  E-value=0.2  Score=48.84  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999996 58888765

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=93.76  E-value=0.29  Score=51.50  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhc-CC--CeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLP-GV--GSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~-Gv--~~itiiD~~   45 (512)
                      +.+|+|||+|++|+.++..|+.. ++  ..|+++|.+
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~   49 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAE   49 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccc
Confidence            47899999999999999999985 55  589999866

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.69  E-value=0.084  Score=49.81  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=28.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|+|+|+|.+|..+++.|...|.  ++++|.+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~   40 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDE   40 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECC
Confidence            35689999999999999999999987  8898765

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.65  E-value=0.14  Score=50.60  Aligned_cols=35  Identities=11%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+..+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~   53 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRT   53 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            344689999999999999999999997 68888765

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.54  E-value=0.18  Score=50.57  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC---CCeEEE
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP---DCQGDF   86 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp---~v~i~~   86 (512)
                      ...||.|+|+|.+|+.++..|+..|+ ++++++|-+                   ..|++..+..|....|   .+++. 
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~~i~-   67 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPKKIY-   67 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEE-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCcEEE-
Confidence            35689999999999999999999998 589999864                   3466666666766544   33332 


Q ss_pred             EeCCCcccccCCcccccccceEEecC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                               ..+.+-++++|+||.+.
T Consensus        68 ---------~~~~~a~~~aDiVvi~a   84 (326)
T 3vku_A           68 ---------SAEYSDAKDADLVVITA   84 (326)
T ss_dssp             ---------ECCGGGGTTCSEEEECC
T ss_pred             ---------ECcHHHhcCCCEEEECC
Confidence                     12345578999999973

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=93.45  E-value=0.0087  Score=61.82  Aligned_cols=67  Identities=10%  Similarity=0.026  Sum_probs=48.0

Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCC-------
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKL-------  482 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~-------  482 (512)
                      ..+|+++....     |.++      .+......++.|++.++.+ |..+|+|||+|     |.||++..+..       
T Consensus       187 ~LVME~i~G~~-----L~~l------~~~~~~~~l~~qll~~l~~lH~~gIVHrDLK-----p~NILl~~dgd~~d~~~~  250 (397)
T 4gyi_A          187 TIVMSLVDALP-----MRQV------SSVPDPASLYADLIALILRLAKHGLIHGDFN-----EFNILIREEKDAEDPSSI  250 (397)
T ss_dssp             EEEEECCSCEE-----GGGC------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCS-----TTSEEEEEEECSSCTTSE
T ss_pred             eEEEEecCCcc-----Hhhh------cccHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----HHHEEEeCCCCccccccc
Confidence            36788886533     2222      1222345677899999999 99999999999     99999975421       


Q ss_pred             --eEEEecCCCCC
Q psy17422        483 --VLKLCDFGSAS  493 (512)
Q Consensus       483 --~~Kl~DfGlar  493 (512)
                        ..-++|||-+.
T Consensus       251 ~~~~~iID~~Q~V  263 (397)
T 4gyi_A          251 TLTPIIIXFPQMV  263 (397)
T ss_dssp             EEEEEECCCTTCE
T ss_pred             ccceEEEEeCCcc
Confidence              26789999765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.43  E-value=0.15  Score=50.68  Aligned_cols=34  Identities=12%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            34589999999999999999999997 58888765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.42  E-value=0.21  Score=51.79  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +.||+|+|+|.+|..+++.|...|+ .+++||.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            4689999999999999999999998 59999988

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.38  E-value=0.085  Score=51.67  Aligned_cols=79  Identities=10%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      ++.++|+|+| +||+|..+++.|+..|.. ++++|.+                   ..|++.+++.+... +.+.+...+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~-------------------~~~~~~l~~~~~~~-~~~~~~~~D  175 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRK-------------------LDKAQAAADSVNKR-FKVNVTAAE  175 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHH-HTCCCEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECC-------------------HHHHHHHHHHHHhc-CCcEEEEec
Confidence            5678899999 999999999999999986 9888754                   13566666666543 233332221


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                        +... +...+.++++|+||++.
T Consensus       176 --~~~~-~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          176 --TADD-ASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             --CCSH-HHHHHHTTTCSEEEECC
T ss_pred             --CCCH-HHHHHHHHhCCEEEECC
Confidence              2100 11124556789999874

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.96  E-value=0.21  Score=50.02  Aligned_cols=74  Identities=16%  Similarity=0.088  Sum_probs=52.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCC--eEEEEe
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDC--QGDFVD   88 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v--~i~~~~   88 (512)
                      ..||.|+|+|.+|+.++..|+..|+ ++++++|-+                   ..|++..+..|+...|..  .+....
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~~   65 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTSY   65 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEEe
Confidence            4589999999999999999999997 589999864                   346666666666554432  112111


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                              .+.+-+++.|+||.+.
T Consensus        66 --------~~~~a~~~aDvVvi~a   81 (326)
T 3pqe_A           66 --------GTYEDCKDADIVCICA   81 (326)
T ss_dssp             --------ECGGGGTTCSEEEECC
T ss_pred             --------CcHHHhCCCCEEEEec
Confidence                    1234577999999973

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.85  E-value=0.21  Score=49.37  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~   41 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRS   41 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45689999999999999999999997 58887654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.65  E-value=0.22  Score=48.57  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            579999999999999999999996 68888765

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.59  E-value=0.1  Score=53.39  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|+..+|+|+|+|..|..++|.|+..|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5788999999999999999999999999999999986

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.56  E-value=0.41  Score=47.25  Aligned_cols=71  Identities=11%  Similarity=0.066  Sum_probs=50.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh----hCCCCeEEEEe
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE----LNPDCQGDFVD   88 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~----lnp~v~i~~~~   88 (512)
                      ||.|+|+|.+|+.++-.|+..|. +++.|+|-.                   +.|++..+.-|+.    ++...++... 
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~G~a~DL~h~~~~~~~~~~i~~~-   61 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA-------------------EDLAVGEAMDLAHAAAGIDKYPKIVGG-   61 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS-------------------HHHHHHHHHHHHHHHGGGTCCCEEEEE-
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CCcchhhhhhhhcccccCCCCCeEecC-
Confidence            79999999999999999998886 789999753                   2455555666665    3333344321 


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                              .+.+-+++.|+||.+.
T Consensus        62 --------~d~~~~~~aDvVvitA   77 (294)
T 2x0j_A           62 --------ADYSLLKGSEIIVVTA   77 (294)
T ss_dssp             --------SCGGGGTTCSEEEECC
T ss_pred             --------CCHHHhCCCCEEEEec
Confidence                    2234478999999973

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.53  E-value=0.13  Score=50.32  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.++|+|+|+||+|..++..|...|++++++++.+
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  150 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRT  150 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            678899999999999999999999999999999766

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=92.52  E-value=0.39  Score=47.77  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC----CCeEEE
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP----DCQGDF   86 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp----~v~i~~   86 (512)
                      ..||.|+|+|.+|+.++..|+..|. ++++++|-+                   ..|++..+..+....+    .+++..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~-------------------~~~~~~~~~dl~~~~~~~~~~~~i~~   66 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN-------------------ESKAIGDAMDFNHGKVFAPKPVDIWH   66 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------cchHHHHHhhHHHHhhhcCCCeEEEc
Confidence            3589999999999999999999885 679999865                   1244444445554444    444442


Q ss_pred             EeCCCcccccCCcccccccceEEecC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                        .        +.+-+++.|+||.+.
T Consensus        67 --~--------~~~al~~aDvViia~   82 (316)
T 1ldn_A           67 --G--------DYDDCRDADLVVICA   82 (316)
T ss_dssp             --C--------CGGGTTTCSEEEECC
T ss_pred             --C--------cHHHhCCCCEEEEcC
Confidence              1        123478999999983

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=92.48  E-value=0.33  Score=46.53  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +...+|.|||+|.+|..+++.|...|...++++|.+
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            445689999999999999999999997657787654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.41  E-value=0.38  Score=47.43  Aligned_cols=70  Identities=11%  Similarity=0.021  Sum_probs=48.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC----CCCeEEEEe
Q psy17422         14 RICLINATGLGTEILKSLVLPGVG-SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN----PDCQGDFVD   88 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln----p~v~i~~~~   88 (512)
                      ||.|+|+|.+|+.++..|+..|.. +++++|-+                   ..|++..+..+...+    ...++....
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~-------------------~~~~~g~~~dl~~~~~~~~~~~~i~~t~   62 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA-------------------EDLAVGEAMDLAHAAAGIDKYPKIVGGA   62 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS-------------------HHHHHHHHHHHHHHHHTTTCCCEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC-------------------hHHHHHHHHHHHhhhhhcCCCCEEEEeC
Confidence            799999999999999999999874 79999865                   123333333344333    234444322


Q ss_pred             CCCcccccCCcccccccceEEec
Q psy17422         89 ENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                               +.+-++++|+||++
T Consensus        63 ---------d~~a~~~aDiVVia   76 (294)
T 1oju_A           63 ---------DYSLLKGSEIIVVT   76 (294)
T ss_dssp             ---------CGGGGTTCSEEEEC
T ss_pred             ---------CHHHhCCCCEEEEC
Confidence                     24567899999997

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.37  E-value=0.33  Score=48.64  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|.|+|+|.+|+.++..|+..|...++++|-+
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34689999999999999999999999559999875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.29  E-value=0.12  Score=53.05  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=35.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      .|+..+|+|+|+|..|..+++.|+..|+++|+++|.+-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            57889999999999999999999999999999999974

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.19  E-value=0.53  Score=46.98  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..||.|+|+|.+|..++..|+..|..+++++|-+
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3589999999999999999999999559999865

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.19  E-value=0.37  Score=47.99  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC----CCCe
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN----PDCQ   83 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln----p~v~   83 (512)
                      ++...||.|+|+|.+|..++..|+..|. ..+.++|-+                   ..|++..+..+....    ..++
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~~   63 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD-------------------TEKVRGDVMDLKHATPYSPTTVR   63 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSSSCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHhhhhhhhHHhhhhhcCCCeE
Confidence            3456799999999999999999999886 679999865                   123333333333322    3444


Q ss_pred             EEEEeCCCcccccCCcccccccceEEecC
Q psy17422         84 GDFVDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        84 i~~~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      +..  .        +.+-+++.|+||.+.
T Consensus        64 v~~--~--------~~~a~~~aDvVvi~a   82 (317)
T 3d0o_A           64 VKA--G--------EYSDCHDADLVVICA   82 (317)
T ss_dssp             EEE--C--------CGGGGTTCSEEEECC
T ss_pred             EEe--C--------CHHHhCCCCEEEECC
Confidence            443  1        234478999999984

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.17  E-value=0.41  Score=48.06  Aligned_cols=76  Identities=12%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC---CCe
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP---DCQ   83 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp---~v~   83 (512)
                      ......||.|+|+|.+|+.++..|++.|. ..++|+|-+                   ..|++..+..|+...+   ..+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~   75 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPK   75 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCe
Confidence            34567899999999999999999999997 579999864                   3567777777776532   112


Q ss_pred             EEEEeCCCcccccCCcccccccceEEec
Q psy17422         84 GDFVDENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        84 i~~~~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      +.. .        .+.+-+++.|+||.+
T Consensus        76 i~~-~--------~d~~~~~~aDiVvi~   94 (331)
T 4aj2_A           76 IVS-S--------KDYSVTANSKLVIIT   94 (331)
T ss_dssp             EEE-C--------SSGGGGTTEEEEEEC
T ss_pred             EEE-c--------CCHHHhCCCCEEEEc
Confidence            221 1        122347899999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.09  E-value=0.18  Score=43.58  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +.||+|+|+|.+|..+++.|...|. .++++|.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~   39 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETS   39 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            4689999999999999999999998 59999987

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.98  E-value=0.12  Score=50.77  Aligned_cols=36  Identities=8%  Similarity=0.145  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.++|+|+|+||+|..++..|...|+++|+|++.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            457899999999999999999999999999999755

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.75  E-value=0.67  Score=49.00  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|.|||+|..|..++++|+..|. ++++.|.+
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~   36 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   36 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34689999999999999999999997 58888754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=91.73  E-value=0.66  Score=45.91  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .||.|+|+|.+|..++..|+..|.-+++++|-+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            589999999999999999999997449999865

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.72  E-value=0.82  Score=44.07  Aligned_cols=31  Identities=10%  Similarity=0.198  Sum_probs=26.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|||+|.+|+.++++|.. |. +++++|.+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~   32 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT   32 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC
Confidence            479999999999999999999 97 48887653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=91.58  E-value=0.17  Score=46.37  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            569999999999999999999999 59999954

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.53  E-value=0.47  Score=46.86  Aligned_cols=33  Identities=24%  Similarity=0.544  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      .+|+|+|+|.+|+.++..|+..|+ .+++++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            479999999999999999999996 679998865

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.47  E-value=0.61  Score=46.78  Aligned_cols=72  Identities=10%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC---CCeEEEE
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP---DCQGDFV   87 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp---~v~i~~~   87 (512)
                      ..||.|+|+|.+|+.++..|+..|+ +.++++|-+                   ..|++..+..|....+   ..++...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~t   81 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM-------------------EDKLKGEMMDLEHGSLFLHTAKIVSG   81 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC-------------------HHHHHHHHHHhhhhhhcccCCeEEEc
Confidence            4689999999999999999999998 689999864                   2344444555554322   2333321


Q ss_pred             eCCCcccccCCcccccccceEEec
Q psy17422         88 DENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                       .+       .++ +++.|+||.+
T Consensus        82 -~d-------~~~-~~daDiVIit   96 (330)
T 3ldh_A           82 -KD-------YSV-SAGSKLVVIT   96 (330)
T ss_dssp             -SS-------SCS-CSSCSEEEEC
T ss_pred             -CC-------HHH-hCCCCEEEEe
Confidence             11       124 8899999987

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=91.44  E-value=0.76  Score=48.74  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+.+|.|||+|..|+.++++|+..|. +++++|.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~   42 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRT   42 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999999999999999999997 58888654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=91.41  E-value=0.15  Score=53.20  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=32.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCC--CeEEEEe
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGV--GSFTIID   43 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv--~~itiiD   43 (512)
                      .|+..+|+|+|+|+.|..+++.|+..|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3567899999999999999999999999  8999999

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.40  E-value=0.28  Score=48.13  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~   47 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIR   47 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999997 58888765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=91.39  E-value=0.53  Score=46.90  Aligned_cols=70  Identities=16%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh----CCCCeEEEEe
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL----NPDCQGDFVD   88 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l----np~v~i~~~~   88 (512)
                      ||.|+|+|.+|+.++..|+..|+ +.++++|-+.                   .|++..+..|+..    ...+++... 
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~-   61 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGT-   61 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEE-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEEC-
Confidence            79999999999999999999997 5799998751                   2344444444432    234455432 


Q ss_pred             CCCcccccCCcccccccceEEec
Q psy17422         89 ENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                              .+.+-+++.|+||.+
T Consensus        62 --------~~~~a~~~aDvVii~   76 (314)
T 3nep_X           62 --------NDYGPTEDSDVCIIT   76 (314)
T ss_dssp             --------SSSGGGTTCSEEEEC
T ss_pred             --------CCHHHhCCCCEEEEC
Confidence                    123557899999997

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=91.38  E-value=0.35  Score=48.83  Aligned_cols=75  Identities=9%  Similarity=0.151  Sum_probs=51.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh-CCCCeEEE
Q psy17422         10 LESARICLINA-TGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL-NPDCQGDF   86 (512)
Q Consensus        10 L~~~~VlivG~-g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l-np~v~i~~   86 (512)
                      |...||.|+|+ |.+|+.++..|+..|. .+++++|-+                   ..|++..+..|+.. .|..++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-------------------~~k~~g~a~DL~~~~~~~~~i~~   66 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-------------------AVGLEGVAEEIRHCGFEGLNLTF   66 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-------------------HHHHHHHHHHHHHHCCTTCCCEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhHHHHHHhhhhCcCCCCceEE
Confidence            45679999997 9999999999999997 579999864                   23555555555543 23222221


Q ss_pred             EeCCCcccccCCcccccccceEEec
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                       .       ....+-+++.|+||.+
T Consensus        67 -t-------~d~~~al~dADvVvit   83 (343)
T 3fi9_A           67 -T-------SDIKEALTDAKYIVSS   83 (343)
T ss_dssp             -E-------SCHHHHHTTEEEEEEC
T ss_pred             -c-------CCHHHHhCCCCEEEEc
Confidence             1       1122446789999997

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.28  E-value=0.14  Score=49.40  Aligned_cols=34  Identities=15%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +. +|+|+|+|+.|..+++.|...|+++|++++.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45 99999999999999999999999999999876

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=91.28  E-value=0.71  Score=45.40  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +.||.+||+|-.|..+++||+..|. ++++.|.+
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~   37 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRT   37 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC---
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3589999999999999999999998 58887644

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=91.20  E-value=0.65  Score=46.26  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC---CCCeEEEEe
Q psy17422         13 ARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN---PDCQGDFVD   88 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln---p~v~i~~~~   88 (512)
                      .||.|+|+|.+|..++-.|+..|. .++.|+|-+                   ..|++..+..|....   ..+++..  
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~v~~--   64 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV-------------------KDRTKGDALDLEDAQAFTAPKKIYS--   64 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHGGGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC-------------------chHHHHHHHHHHHHHHhcCCeEEEE--
Confidence            689999999999999999998885 568888754                   245555555565543   3444443  


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .        +.+-+++.|+||.+.
T Consensus        65 ~--------~~~a~~~aDvVii~a   80 (318)
T 1ez4_A           65 G--------EYSDCKDADLVVITA   80 (318)
T ss_dssp             C--------CGGGGTTCSEEEECC
T ss_pred             C--------CHHHhCCCCEEEECC
Confidence            1        234478999999984

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.01  E-value=0.61  Score=46.05  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      ||.|+|+|.+|+.++..|+..|. ++++++|-+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999999995 579999876

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.00  E-value=0.77  Score=48.31  Aligned_cols=34  Identities=12%  Similarity=0.233  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|.|||+|..|+.++++|+..|. +++++|.+
T Consensus         4 ~~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            4 AQANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TTBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            34689999999999999999999998 58887644

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.97  E-value=0.45  Score=46.40  Aligned_cols=35  Identities=14%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCC--CeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGV--GSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv--~~itiiD~~   45 (512)
                      ...+|.|||+|..|+.+++.|...|+  .+++++|.+
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~   38 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRS   38 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCC
Confidence            45789999999999999999999996  268888755

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.82  E-value=0.57  Score=46.65  Aligned_cols=35  Identities=14%  Similarity=0.164  Sum_probs=31.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..||.|+|+|.+|+.++..|+..|+++++++|-+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45689999999999999999999999889999876

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.71  E-value=1.9  Score=41.15  Aligned_cols=33  Identities=6%  Similarity=-0.005  Sum_probs=28.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|.|+|.+|+.+++.|...|. +++.++.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~   37 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRN   37 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            4689999999999999999999996 57777543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=90.46  E-value=0.75  Score=45.99  Aligned_cols=72  Identities=15%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC---CCCeEEEE
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN---PDCQGDFV   87 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln---p~v~i~~~   87 (512)
                      ..||.|+|+|.+|..++-.|+..|. .++.|+|-+                   ..|++..+..|....   ..+++.. 
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~i~~-   68 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLSNALPFTSPKKIYS-   68 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC-------------------chHhHHHHHHHHHHHHhcCCeEEEE-
Confidence            4689999999999999999998885 568888754                   235555555555433   3444443 


Q ss_pred             eCCCcccccCCcccccccceEEecC
Q psy17422         88 DENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                       .        +.+-+++.|+||.+.
T Consensus        69 -~--------~~~a~~~aDvVii~a   84 (326)
T 2zqz_A           69 -A--------EYSDAKDADLVVITA   84 (326)
T ss_dssp             -C--------CGGGGGGCSEEEECC
T ss_pred             -C--------CHHHhCCCCEEEEcC
Confidence             1        234488999999984

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=90.20  E-value=0.73  Score=45.70  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC---CCCeEEEEe
Q psy17422         13 ARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN---PDCQGDFVD   88 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln---p~v~i~~~~   88 (512)
                      .||.|+|+|.+|..++-.|+..|. +++.|+|-+                   ..|++..+..|....   ..+++..  
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~--   59 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA--   59 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE--
Confidence            379999999999999999998874 578898765                   245555555665533   3445543  


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .        +.+=+++.|+||.+.
T Consensus        60 ~--------~~~a~~~aD~Vii~a   75 (310)
T 2xxj_A           60 G--------SYGDLEGARAVVLAA   75 (310)
T ss_dssp             C--------CGGGGTTEEEEEECC
T ss_pred             C--------CHHHhCCCCEEEECC
Confidence            1        233478999999974

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.19  E-value=1.3  Score=46.46  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENP   91 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~   91 (512)
                      ..+|+|+|.|-+|..+|+.|-. + .++++|+.+                   +.||+.+++.|    |.+.  ...++.
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d-------------------~~r~~~la~~l----~~~~--Vi~GD~  287 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERN-------------------LQRAEKLSEEL----ENTI--VFCGDA  287 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESC-------------------HHHHHHHHHHC----TTSE--EEESCT
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c-CceEEEecC-------------------HHHHHHHHHHC----CCce--EEeccc
Confidence            4689999999999999999853 4 479999877                   45655555443    5443  334443


Q ss_pred             cccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCcccc
Q psy17422         92 QVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFH  171 (512)
Q Consensus        92 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  171 (512)
                      +     +.+++                                                            ..+.+.++|
T Consensus       288 t-----d~~~L------------------------------------------------------------~ee~i~~~D  302 (461)
T 4g65_A          288 A-----DQELL------------------------------------------------------------TEENIDQVD  302 (461)
T ss_dssp             T-----CHHHH------------------------------------------------------------HHTTGGGCS
T ss_pred             c-----chhhH------------------------------------------------------------hhcCchhhc
Confidence            3     11111                                                            123467899


Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCcEEE
Q psy17422        172 MVISTNLPETTLIELSKTLWSLNIPLLA  199 (512)
Q Consensus       172 ~Vi~~~~~~~~~~~l~~~~~~~~ip~i~  199 (512)
                      ++|+++.+.+.-...+-++++.+++-+-
T Consensus       303 ~~ia~T~~De~Ni~~~llAk~~gv~kvI  330 (461)
T 4g65_A          303 VFIALTNEDETNIMSAMLAKRMGAKKVM  330 (461)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEcccCcHHHHHHHHHHHHcCCcccc
Confidence            9999999999999999999998887544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.12  E-value=0.14  Score=44.41  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|+|+|+|++|..+++.|...|+. ++++|.+
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~   53 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN   53 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            478999999999999999999999987 9998865

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.85  E-value=1.1  Score=44.16  Aligned_cols=38  Identities=16%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             HHHHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          7 QAALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         7 Q~~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..+...+|||.| .|.+|+.+++.|...|. +++.++..
T Consensus        20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   58 (351)
T 3ruf_A           20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNF   58 (351)
T ss_dssp             HHHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             hCCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4567789999999 58899999999999995 68887754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.76  E-value=1.3  Score=43.77  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      .+|.|||+|.+|..+++.|...|.. +++++|.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            6899999999999999999999974 68888765

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=89.26  E-value=0.83  Score=45.36  Aligned_cols=32  Identities=19%  Similarity=0.420  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      +|.|||+|.+|+.++..|+..|. ++++++|.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            79999999999999999999995 468888765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.24  E-value=0.31  Score=47.27  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.++|+|+|+|++|..+++.|...| .+++++|.+
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~  151 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRT  151 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECC
Confidence            45789999999999999999999999 689998654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.93  E-value=1.5  Score=40.21  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINA-TGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~-g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEec
Confidence            6999996 8999999999999996 68887654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=88.87  E-value=3  Score=41.02  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=28.8

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINA-TGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~-g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+...+|+|.|+ |.+|..+++.|...|. +++++|..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   60 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNF   60 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3567789999996 8999999999999996 68887754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=88.67  E-value=0.44  Score=42.42  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      .+|+|||.|.+|.|++..|...|. +++++|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999998 699999763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=88.64  E-value=0.59  Score=46.52  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      ..||.|+|+|.+|..++-.|+..|. ++++++|-+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999886 679999865

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.41  E-value=0.49  Score=45.58  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=46.9

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      .|+++.++|-| .+|+|.++++.|+..|. ++.++|.+                   ..+++.+++.+++...  ++..+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~-------------------~~~~~~~~~~i~~~g~--~~~~~   61 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELL-------------------EDRLNQIVQELRGMGK--EVLGV   61 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            37788888887 67999999999999998 58888754                   3467778888887755  45555


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..+++
T Consensus        62 ~~Dvt   66 (254)
T 4fn4_A           62 KADVS   66 (254)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            55554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=88.40  E-value=0.29  Score=47.54  Aligned_cols=35  Identities=11%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.++|+|+|+|++|..++..|...| .++++++.+
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~  151 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT  151 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence            45689999999999999999999999 789998765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=88.25  E-value=1.8  Score=42.72  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      +|.|+|+|.+|+.++..|+..|. .+++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999998753 479999876

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=88.17  E-value=1.1  Score=44.66  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..||+|+|+|.+|..+++.|...|.  ++++|.+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~  146 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDE  146 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCG
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCC
Confidence            4589999999999999999999997  9999876

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=88.06  E-value=0.97  Score=47.62  Aligned_cols=31  Identities=6%  Similarity=0.260  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            79999999999999999999997 58888754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=87.95  E-value=0.72  Score=45.55  Aligned_cols=36  Identities=8%  Similarity=0.082  Sum_probs=27.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         10 LESARICLINA-TGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~-g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      +...+|||.|+ |.+|+.+++.|...|-. +++.+|..
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            55678999996 89999999999999932 45666644

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.91  E-value=0.4  Score=49.43  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=33.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +...+|+|+|+|++|..+++.|...|+++++++|..
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~  200 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT  200 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            578899999999999999999999999899998754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=87.61  E-value=0.44  Score=45.85  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++. +|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~  148 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT  148 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            456 99999999999999999999998 89998754

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=87.56  E-value=1.5  Score=43.68  Aligned_cols=72  Identities=13%  Similarity=0.068  Sum_probs=51.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHh-cCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         11 ESARICLINATGLGTEILKSLVL-PGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl-~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ...+|+|||+|+.|...++.|.. .++.+++++|.+                   ..|++.+++.+....  +.+. . .
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~~-~-~  180 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISAS-V-Q  180 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHHHTT--CCEE-E-C
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhcC--ceEE-E-C
Confidence            45789999999999999999987 478899998754                   357777777776532  3333 2 2


Q ss_pred             CCcccccCCcccccccceEEecCC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                      ++       ++.+ ++|+||.+..
T Consensus       181 ~~-------~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          181 PA-------EEAS-RCDVLVTTTP  196 (322)
T ss_dssp             CH-------HHHT-SSSEEEECCC
T ss_pred             CH-------HHHh-CCCEEEEeeC
Confidence            22       2455 7999998743

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=87.52  E-value=1.8  Score=42.75  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCC-CeEEEEeC
Q psy17422         14 RICLINA-TGLGTEILKSLVLPGV-GSFTIIDG   44 (512)
Q Consensus        14 ~VlivG~-g~lg~ei~knLvl~Gv-~~itiiD~   44 (512)
                      ||+|+|+ |.+|+.++..|+..|. ..+.++|-
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            7999998 9999999999998886 45888885

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=87.52  E-value=2.2  Score=39.00  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=27.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|.| .|++|.++++.|+..|. ++++++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~   33 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARK   33 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            699998 79999999999999995 68888765

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.40  E-value=1.9  Score=39.15  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=26.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~   33 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRN   33 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcC
Confidence            699999 58999999999999995 68887654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=87.27  E-value=0.64  Score=43.58  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ....|+|||+|..|.++|..|+..|+ +++++|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            45789999999999999999999998 59999876

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=87.12  E-value=2.6  Score=41.05  Aligned_cols=81  Identities=10%  Similarity=-0.011  Sum_probs=51.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE-
Q psy17422         10 LESARICLINA-TGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV-   87 (512)
Q Consensus        10 L~~~~VlivG~-g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~-   87 (512)
                      +...+|+|.|+ |.+|+.+++.|...|. ++++++.+.                   .+...+.+.+....+ -+++.+ 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~   67 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAV   67 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEE
Confidence            45678999986 9999999999999996 577776431                   123333444443332 244544 


Q ss_pred             eCCCcccccCCcccccccceEEecC
Q psy17422         88 DENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      ..++.. .+...+++++.|+||...
T Consensus        68 ~~D~~d-~~~~~~~~~~~d~vih~A   91 (342)
T 1y1p_A           68 VEDMLK-QGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CSCTTS-TTTTTTTTTTCSEEEECC
T ss_pred             ecCCcC-hHHHHHHHcCCCEEEEeC
Confidence            455542 123345667889999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.95  E-value=0.38  Score=47.00  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |+.++|+|+|+|++|..+++.|+..|  +++++|.+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~  159 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRT  159 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECC
Confidence            46788999999999999999999999  89998654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=86.92  E-value=0.63  Score=43.15  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             HHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          6 GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         6 ~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...++...+|.|+|+|.+|+.+++.|+..|. +++++|.+
T Consensus        13 ~~~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           13 ENLYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             -------CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             cccccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            3456888899999999999999999999997 68888755

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=86.91  E-value=0.66  Score=44.10  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+...+|.|||+|.+|+.++++|+..|. ++++.|.+
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~   51 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRD   51 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            47889999999999999999999999997 68888865

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=86.90  E-value=0.62  Score=48.51  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=35.6

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCC--CeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGV--GSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv--~~itiiD~~   45 (512)
                      ++|+..+|++.|+|+.|.-+++.|+..|+  ++|.++|..
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecc
Confidence            45889999999999999999999999999  899999986

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.73  E-value=1.6  Score=41.38  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC-CeEEEE
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD-CQGDFV   87 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~-v~i~~~   87 (512)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+++.+++.+.+.++. .++..+
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   64 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIVL   64 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceEE
Confidence            5667788887 68999999999999998 68887754                   24566677777777655 455555


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        65 ~~Dv~   69 (250)
T 3nyw_A           65 PLDIT   69 (250)
T ss_dssp             ECCTT
T ss_pred             eccCC
Confidence            55554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.63  E-value=0.6  Score=45.72  Aligned_cols=36  Identities=11%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|..++|+|+|+|.+|..+++.|...|. +++++|..
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            3678899999999999999999999998 79988865

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=86.37  E-value=0.55  Score=47.21  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +-||+|||+|..|..+|-.|...|+ +++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            3589999999999999999999999 59999864

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=86.28  E-value=0.98  Score=43.66  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=41.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      .++.++|+|.| .||+|.++++.|+..|. ++.+++.+                   ..+.+.+++.+.+.++ .++..+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~~~~~~   67 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD-------------------VTKGHEAVEKLKNSNH-ENVVFH   67 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC-CSEEEE
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEEE
Confidence            45667788887 58999999999999997 68887654                   2345555666665543 245555


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        68 ~~Dl~   72 (311)
T 3o26_A           68 QLDVT   72 (311)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            55554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=86.24  E-value=0.69  Score=45.57  Aligned_cols=35  Identities=14%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      ...+|+|+|+|++|+.++..|+..|. ++++++|.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999995 479999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.10  E-value=0.65  Score=45.60  Aligned_cols=36  Identities=8%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|..++|+|+|+|.+|..+++.|...|. +++++|..
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3678899999999999999999999998 79998865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=85.96  E-value=0.48  Score=47.13  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      +..+|+|||+|..|..+|..|...|..+++|+|.+.
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            346799999999999999999999975799999764

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=85.87  E-value=2  Score=40.99  Aligned_cols=63  Identities=16%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+.+.|+|.| .||+|.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+..++..+.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   65 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARD-------------------GERLRAAESALRQRFPGARLFASV   65 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEEe
Confidence            5677888887 679999999999999984 8887754                   245566677777767766677666


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        66 ~Dv~   69 (265)
T 3lf2_A           66 CDVL   69 (265)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            6665

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=85.72  E-value=3.8  Score=43.73  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .||+|+|+|-+|..+++.|...|.. +++||.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d  380 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQ  380 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECC
Confidence            7999999999999999999999985 9999987

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=85.54  E-value=0.78  Score=46.71  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      ....|+|||+|..|..+|..|...|+.+++|+|...
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            356899999999999999999999996699999753

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=85.52  E-value=1.5  Score=41.92  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=24.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhc-CCCeEEEEeC
Q psy17422         14 RICLINA-TGLGTEILKSLVLP-GVGSFTIIDG   44 (512)
Q Consensus        14 ~VlivG~-g~lg~ei~knLvl~-Gv~~itiiD~   44 (512)
                      ||+|+|+ |.+|..+++.+... |+.=+-++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            7999997 99999999998754 7654446654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=85.47  E-value=2.8  Score=41.17  Aligned_cols=70  Identities=9%  Similarity=0.052  Sum_probs=47.7

Q ss_pred             cEEEEc-CChHHHHHHHHHHhcCCC-eEEEEeC--CccCcccCCCccccCcCccCChHHHHHHHHHHhh---CCCCeEEE
Q psy17422         14 RICLIN-ATGLGTEILKSLVLPGVG-SFTIIDG--EKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL---NPDCQGDF   86 (512)
Q Consensus        14 ~VlivG-~g~lg~ei~knLvl~Gv~-~itiiD~--~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l---np~v~i~~   86 (512)
                      ||+|+| +|.+|..++..|+..|.. ++.++|-  +                   ..|++..+..|...   ...+++..
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~-------------------~~~~~~~~~dl~~~~~~~~~~~v~~   62 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDK-------------------EDDTVGQAADTNHGIAYDSNTRVRQ   62 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGG-------------------HHHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCC-------------------hhhHHHHHHHHHHHHhhCCCcEEEe
Confidence            799999 999999999999988864 5888876  2                   11233333344433   45556654


Q ss_pred             EeCCCcccccCCcccccccceEEecC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                        .        +.+-+++.|+||.+.
T Consensus        63 --~--------~~~a~~~aDvVi~~a   78 (303)
T 1o6z_A           63 --G--------GYEDTAGSDVVVITA   78 (303)
T ss_dssp             --C--------CGGGGTTCSEEEECC
T ss_pred             --C--------CHHHhCCCCEEEEcC
Confidence              1        134578999999974

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=85.42  E-value=0.7  Score=46.07  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDG   44 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~   44 (512)
                      ...+|+|||+|++|+.++..|+..|. .++++|.
T Consensus         2 ~~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            2 SLTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            35689999999999999999999997 6888875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=85.37  E-value=0.77  Score=44.62  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3689999999999999999999998 69998765

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=85.37  E-value=2.8  Score=40.62  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=28.5

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            36899999 68999999999999997 68888765

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.36  E-value=1.6  Score=41.60  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+.++|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++...+..+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   67 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQPVV   67 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEEe
Confidence            4567788887 68999999999999997 58887654                   245666778888888877777776


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        68 ~D~~   71 (267)
T 3t4x_A           68 ADLG   71 (267)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            6665

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=85.33  E-value=2.4  Score=42.35  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=26.7

Q ss_pred             HHhcCcEEEEcCChHHH-HHHHHHHhc-CCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGT-EILKSLVLP-GVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~-ei~knLvl~-Gv~~itiiD~~   45 (512)
                      .++.-+|.|||+|.+|. ..+++|... |+.-+.++|.+
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   62 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR   62 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            45567899999999998 789999876 55433466654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=85.32  E-value=0.74  Score=45.61  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|+|+|.+|+.++..|+..|..+++++|.+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            589999999999999999999998669999875

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=85.11  E-value=1.4  Score=44.35  Aligned_cols=75  Identities=8%  Similarity=0.047  Sum_probs=52.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHh-cCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         11 ESARICLINATGLGTEILKSLVL-PGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl-~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      ...+|+|||+|+.|...++.|.. .++.+++++|.+                   ..|++.+++.+.+. +.+.+... .
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~-------------------~~~a~~la~~~~~~-~g~~~~~~-~  186 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKEY-SGLTIRRA-S  186 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTTC-TTCEEEEC-S
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHHHhc-cCceEEEe-C
Confidence            46789999999999999999854 588899998754                   34666666666442 34444332 1


Q ss_pred             CCcccccCCcccccccceEEecCC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                      +       .++.+.++|+||.+..
T Consensus       187 ~-------~~eav~~aDiVi~aTp  203 (350)
T 1x7d_A          187 S-------VAEAVKGVDIITTVTA  203 (350)
T ss_dssp             S-------HHHHHTTCSEEEECCC
T ss_pred             C-------HHHHHhcCCEEEEecc
Confidence            2       2356678999998743

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=85.08  E-value=2.4  Score=39.79  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|.|||+|.+|..++++|...|+.-+.++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            68999999999999999998888544677765

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=84.85  E-value=0.94  Score=46.43  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKIS   48 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~   48 (512)
                      ...|+|||+|..|..+|..|+..|.++++|+|....-
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4679999999999999999999998679999987653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=84.78  E-value=1  Score=45.06  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..|+..+|.|||+|.+|..++++|...|+ ++++.|.+
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~   48 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRS   48 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCT
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECC
Confidence            46888999999999999999999999997 57777654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=84.56  E-value=0.89  Score=44.51  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999997 69999865

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=84.53  E-value=0.78  Score=45.64  Aligned_cols=33  Identities=9%  Similarity=0.124  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +--|+|||+|..|+.+|..|++.|+. ++|+|..
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er~   36 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLK-TLMIEKR   36 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            34599999999999999999999995 9999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=84.48  E-value=2.9  Score=43.93  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~   34 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999998 58888654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.39  E-value=0.82  Score=46.24  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++..+|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~  199 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN  199 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            567899999999999999999999999 89998765

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=84.38  E-value=0.99  Score=45.15  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKIS   48 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~   48 (512)
                      ...|+|||+|.+|+.+|..|+..|.+ ++|+|...+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            46899999999999999999999985 9999987543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=84.38  E-value=0.73  Score=43.83  Aligned_cols=34  Identities=3%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC---CeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV---GSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv---~~itiiD~~   45 (512)
                      ..+|.|||+|.+|+.++++|...|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            4589999999999999999999995   579998765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=84.15  E-value=1  Score=44.92  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKIS   48 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~   48 (512)
                      ...|+|||+|.+|+.+|..|+..|. +++|+|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4579999999999999999999997 69999976543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=84.08  E-value=2.7  Score=39.92  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      .|..++|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+..++..+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhcCCceEEEE
Confidence            36677888887 78999999999999997 58877654                   12344555666666555566666


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        70 ~~D~~   74 (267)
T 1iy8_A           70 VADVS   74 (267)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            66554

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=84.03  E-value=5.9  Score=38.07  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=27.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINA-TGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~-g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|.|+ |.+|..+++.|...|. +++++|..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   33 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNL   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            36999996 8999999999999997 58887654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=84.02  E-value=0.87  Score=46.40  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+..++|+|+|+|++|..+++.+...|. +++++|..
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4778999999999999999999999998 79998865

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=83.98  E-value=0.88  Score=46.14  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +...+|+|||+|..|..+|..|...|+ +++|+|..
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~   58 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERD   58 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            345689999999999999999999998 69999976

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=83.80  E-value=0.95  Score=43.48  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=28.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|+|+|.+|+.+++.|...|. +++++|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   32 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRV   32 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcC
Confidence            69999999999999999999997 79999875

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=83.75  E-value=3.6  Score=40.10  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=26.6

Q ss_pred             HHhcCcEEEEcCChHHHH-HHHHHHh-cCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTE-ILKSLVL-PGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~e-i~knLvl-~Gv~~itiiD~~   45 (512)
                      .|+.-+|.|||+|.+|.. .+++|.. .|+.-+.++|.+
T Consensus         3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   41 (308)
T 3uuw_A            3 AMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN   41 (308)
T ss_dssp             --CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC
T ss_pred             ccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            356679999999999996 8888876 565434466654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.73  E-value=1.9  Score=40.98  Aligned_cols=63  Identities=19%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             HHhcCcEEEEcC-C-hHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422          9 ALESARICLINA-T-GLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus         9 ~L~~~~VlivG~-g-~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      .|+.++|+|.|+ | |+|.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+.. ..++..
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYH-------------------ERRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTC-SSCEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCC-------------------HHHHHHHHHHHHhcC-CCceEE
Confidence            367888999998 6 8999999999999974 8887754                   234455556665543 235666


Q ss_pred             EeCCCc
Q psy17422         87 VDENPQ   92 (512)
Q Consensus        87 ~~~~~~   92 (512)
                      +..++.
T Consensus        78 ~~~Dl~   83 (266)
T 3o38_A           78 VVCDVT   83 (266)
T ss_dssp             EECCTT
T ss_pred             EEeCCC
Confidence            666554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=83.71  E-value=1.3  Score=44.02  Aligned_cols=71  Identities=13%  Similarity=0.110  Sum_probs=49.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHh-cCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVL-PGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl-~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      .++|+|||+|..|...++.|.. .++.+|++.|.+                     |++..++.+.+.. .+.+...  +
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~--~  176 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA--A  176 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--C
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--C
Confidence            5789999999999999999986 478999998655                     2233445554322 3444433  3


Q ss_pred             CcccccCCcccccccceEEecCC
Q psy17422         91 PQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                      +       ++.+.++|+||.+..
T Consensus       177 ~-------~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          177 P-------ADIAAQADIVVTATR  192 (313)
T ss_dssp             H-------HHHHHHCSEEEECCC
T ss_pred             H-------HHHHhhCCEEEEccC
Confidence            3       356778999998643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=83.67  E-value=0.97  Score=45.76  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      .+||+|||+|..|..+|+.|.+.|-+ +|||||..
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~   36 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN   36 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCC
Confidence            57999999999999999999998864 89999875

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=83.65  E-value=3.3  Score=39.65  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      |+.++|+|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   40 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSA   40 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccc
Confidence            5677888887 67999999999999997 688988763

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=83.60  E-value=1  Score=45.65  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      +..+..+|+|||+|..|..+|..|+..|+ +++|+|.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            44567789999999999999999999998 599999764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=83.42  E-value=0.84  Score=45.62  Aligned_cols=36  Identities=11%  Similarity=0.156  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKIS   48 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~   48 (512)
                      ...|+|||+|.+|..+|..|+..|. +++|+|...+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4579999999999999999999998 69999986543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=83.27  E-value=1.2  Score=41.26  Aligned_cols=33  Identities=9%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4689999999999999999999997 58888754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=82.99  E-value=1.1  Score=42.67  Aligned_cols=32  Identities=13%  Similarity=0.127  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|||+|..|..+|..|...|. +++|+|..
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   34 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAG   34 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            579999999999999999999997 69999975

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=82.94  E-value=1.1  Score=43.59  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|||+|.+|+.+++.|...|. +++++|.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            589999999999999999999996 68888754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=82.93  E-value=1.1  Score=44.28  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|++|+.++..|...|. +++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            589999999999999999999996 79998765

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=82.85  E-value=0.79  Score=44.92  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..+|+|||+|..|..+|..|...|+ +++|+|..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~   35 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAE   35 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSC-CEEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            34689999999999999999999998 59999976

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=82.79  E-value=1.3  Score=42.49  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |...+|+|.|+|.+|+.+++.|...|. +++.++..
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~   35 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRS   35 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            345789999999999999999999997 58887654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=82.77  E-value=1  Score=45.57  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~  198 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVN  198 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            677899999999999999999999998 79998765

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=82.74  E-value=0.88  Score=43.82  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+                   ..+.+.+++.+.+...  ++..+.
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~-------------------~~~~~~~~~~l~~~g~--~~~~~~   64 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIR-------------------ATLLAESVDTLTRKGY--DAHGVA   64 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC-------------------HHHHHHHHHHHHHTTC--CEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            4555566655 78999999999999998 47776543                   2355667777777654  445554


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .+++
T Consensus        65 ~Dv~   68 (255)
T 4g81_D           65 FDVT   68 (255)
T ss_dssp             CCTT
T ss_pred             eeCC
Confidence            4443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=82.68  E-value=1.2  Score=44.41  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..+|+|+|+|.+|+.++..|...|. +++++|.+
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            34689999999999999999999996 58888764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=82.59  E-value=1  Score=45.27  Aligned_cols=37  Identities=11%  Similarity=0.022  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      .+...+|+|||+|..|..+|..|...|+ +++|+|...
T Consensus         8 ~m~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A            8 PGKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            3556789999999999999999999998 699998653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=82.51  E-value=1.2  Score=45.25  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCCc
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVG-SFTIIDGEK   46 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~~   46 (512)
                      +++|+|||+|..|..+|..|...|.. +|+|+|...
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            36899999999999999999999985 899999875

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=82.45  E-value=0.42  Score=47.07  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|..++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            4788999999999999999999999998 58888764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=82.23  E-value=0.99  Score=44.06  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|++|+.++..|...|. +++++|.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            589999999999999999999996 69999876

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=82.22  E-value=1.1  Score=44.24  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|++|+.++..|...|. ++++++.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            589999999999999999999996 69988765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=82.18  E-value=4.5  Score=38.59  Aligned_cols=64  Identities=9%  Similarity=-0.020  Sum_probs=44.4

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      .|+.++|+|.| .|++|.++++.|+..|. ++.+++.+                   ..+.+.+.+.+.+.....++..+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   88 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTLIPY   88 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC-------------------hHHHHHHHHHHHhcCCCceEEEE
Confidence            36778899997 68999999999999997 58877654                   12344555666665544456655


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        89 ~~Dl~   93 (279)
T 1xg5_A           89 RCDLS   93 (279)
T ss_dssp             ECCTT
T ss_pred             EecCC
Confidence            55554

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=81.96  E-value=4.1  Score=39.47  Aligned_cols=35  Identities=6%  Similarity=-0.027  Sum_probs=26.0

Q ss_pred             CccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEee
Q psy17422        167 FQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRS  202 (512)
Q Consensus       167 ~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  202 (512)
                      +.+.|+||+++. ++....+...|.+++++++.+.+
T Consensus        70 l~~~DvVIDft~-p~~~~~~~~~a~~~G~~vVigTt  104 (273)
T 1dih_A           70 KDDFDVFIDFTR-PEGTLNHLAFCRQHGKGMVIGTT  104 (273)
T ss_dssp             TTSCSEEEECSC-HHHHHHHHHHHHHTTCEEEECCC
T ss_pred             hcCCCEEEEcCC-hHHHHHHHHHHHhCCCCEEEECC
Confidence            346788987774 45567777888999999887554

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=81.95  E-value=0.53  Score=46.91  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..|..++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~  171 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRS  171 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            45788999999999999999999999998 48888754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=81.80  E-value=1.3  Score=43.91  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCC---CeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGV---GSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv---~~itiiD~~   45 (512)
                      +...+|.|||+|.+|+.++++|...|+   ..++++|.+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            445689999999999999999999995   568887654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=81.78  E-value=1.3  Score=44.38  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .||.|+|+|.+|+.++..|+..|..+++++|-+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998459999876

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=81.69  E-value=1.4  Score=41.21  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |..++|+|.| .|++|.++++.|+..|. +++++|.+
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~   44 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN   44 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5677888887 68999999999999997 58887753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=81.56  E-value=1.2  Score=44.51  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      ..|+|||+|.+|+.+|..|+..|. +++|+|.+..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            579999999999999999999997 5999997654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=81.40  E-value=1.4  Score=44.43  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      +.+|+|||+|..|..+|..|...|+ +++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3689999999999999999999998 499999764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=81.21  E-value=4.4  Score=39.02  Aligned_cols=36  Identities=17%  Similarity=0.384  Sum_probs=30.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      |+.++|+|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   43 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSA   43 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            6678888887 67999999999999998 688888763

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=81.16  E-value=4.4  Score=38.49  Aligned_cols=73  Identities=8%  Similarity=0.081  Sum_probs=45.5

Q ss_pred             HHHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHH-HHHHHHHHhhCCCCe
Q psy17422          8 AALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRA-EVATQLLLELNPDCQ   83 (512)
Q Consensus         8 ~~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka-~~~~~~l~~lnp~v~   83 (512)
                      ..++.++|+|.| .||+|.++++.|+..|. ++.++|.+.-...+.  ...+-.-|+..... +.+.+.+.+....+.
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   98 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP--DIHTVAGDISKPETADRIVREGIERFGRID   98 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST--TEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC--ceEEEEccCCCHHHHHHHHHHHHHHCCCCC
Confidence            346677888887 67999999999999998 588888764332222  12222346665443 344444444444333

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=81.07  E-value=3  Score=39.32  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=45.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHh---cCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEE
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVL---PGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGD   85 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl---~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~   85 (512)
                      |+.++|+|.| .||+|.++++.|+.   .|. ++.++|.+                   ..+.+.+++.+.+.++..++.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~   63 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARS-------------------ESMLRQLKEELGAQQPDLKVV   63 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEE
Confidence            4566777777 67999999999999   897 58887654                   134555667777776666777


Q ss_pred             EEeCCCc
Q psy17422         86 FVDENPQ   92 (512)
Q Consensus        86 ~~~~~~~   92 (512)
                      .+..++.
T Consensus        64 ~~~~Dv~   70 (259)
T 1oaa_A           64 LAAADLG   70 (259)
T ss_dssp             EEECCTT
T ss_pred             EEecCCC
Confidence            7766665

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=81.05  E-value=0.6  Score=46.68  Aligned_cols=37  Identities=8%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..|..++|.|||+|.+|.++++.|...|. ++..+|..
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            45889999999999999999999999998 58888764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=80.99  E-value=1.2  Score=45.06  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      ...+|+|||+|..|..+|..|...|+ +++|+|...
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   38 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   38 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            34689999999999999999999998 699998763

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=80.90  E-value=4.7  Score=40.38  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=26.8

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHH-h-cCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLV-L-PGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLv-l-~Gv~~itiiD~~   45 (512)
                      +..-+|.|||+|.+|...+++|. . .|+.-+.++|.+
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~   58 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV   58 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCC
Confidence            45568999999999999999998 4 565444466543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=80.88  E-value=1.1  Score=46.24  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      .+|+|||+|..|..+|..|+..|+ +++|+|...
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            579999999999999999999998 699999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=80.85  E-value=1.2  Score=45.04  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      +..|+|||+|..|+.+|..|+..|+ +++|+|.+..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3689999999999999999999999 6999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=80.84  E-value=1.2  Score=45.68  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +..++|+|+|+|++|..+++.+...|. +++++|..
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~  204 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTR  204 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            457899999999999999999999998 79998865

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=80.76  E-value=4.9  Score=37.91  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |..++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRN   40 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4567788887 67999999999999997 58887654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=80.58  E-value=1.5  Score=43.01  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..++|.|||+|..|+.+|.+|+ +|. .++++|.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~   43 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVS   43 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSC
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECC
Confidence            4678999999999999999999 998 69998855

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=80.51  E-value=5.5  Score=37.80  Aligned_cols=67  Identities=9%  Similarity=0.103  Sum_probs=42.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHH-HHHHHHHHhhCC
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRA-EVATQLLLELNP   80 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka-~~~~~~l~~lnp   80 (512)
                      .|+.++|+|.| .|++|.++++.|+..|. ++.++|.+.-.    +.+..+-.-|+..... +.+.+.+.+...
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   73 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG----EAKYDHIECDVTNPDQVKASIDHIFKEYG   73 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC----SCSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            36778889997 67999999999999997 58888765321    2222222346655433 334444444433

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=80.51  E-value=0.99  Score=44.89  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=30.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      ..|+|||+|.+|+.+|..|+..|. +++|+|....
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            579999999999999999999998 5999997654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=80.43  E-value=1.5  Score=41.65  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|.|||+|.+|+.++++|...|...++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            69999999999999999999995468887654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=80.34  E-value=2.3  Score=40.99  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=42.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      +..+.|+|.| .||+|.++++.|+..|. ++.++|..                  ...+.+.+++.+.+..+  ++..+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~   85 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIG------------------DAEGVAPVIAELSGLGA--RVIFLR   85 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCC------------------CHHHHHHHHHHHHhcCC--cEEEEE
Confidence            4456688887 67999999999999998 58887742                  02345566667766554  455555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        86 ~Dv~   89 (280)
T 4da9_A           86 ADLA   89 (280)
T ss_dssp             CCTT
T ss_pred             ecCC
Confidence            5554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=80.32  E-value=4  Score=38.51  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |+.++|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~   40 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRN   40 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677888887 67999999999999998 58888764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=80.31  E-value=1.3  Score=43.63  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...|+|||+|..|..+|..|+..|. +++|+|.+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~   36 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAA   36 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3579999999999999999999998 59999987

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=80.25  E-value=3.4  Score=40.86  Aligned_cols=35  Identities=17%  Similarity=0.048  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC-cc
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE-KI   47 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~-~v   47 (512)
                      .+..|+|||+|..|+.+|..|+ .|. +++|+|.. .+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~~~~   43 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHG-RVVVLEREAQP   43 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTS-CEEEECSSSST
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCC-CEEEEECCCCc
Confidence            3678999999999999999999 597 69999986 45

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=80.19  E-value=1.6  Score=46.25  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHh---cCCCeEEEEeCCcc
Q psy17422         12 SARICLINATGLGTEILKSLVL---PGVGSFTIIDGEKI   47 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl---~Gv~~itiiD~~~v   47 (512)
                      ..+|+|||+|..|..+|..|+.   .|+ +++|+|.+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            4689999999999999999999   998 6999998654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=80.16  E-value=1.6  Score=41.89  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|.|||+|.+|+.+++.|...|. +++++|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999997 68888654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=80.16  E-value=3.5  Score=40.82  Aligned_cols=73  Identities=10%  Similarity=0.113  Sum_probs=48.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHhc-CC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         14 RICLIN-ATGLGTEILKSLVLP-GV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        14 ~VlivG-~g~lg~ei~knLvl~-Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      ||.|+| +|.+|..++..|... ++ .+++++|-+.                    |+.-.+..|+.....+++..+.. 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~--------------------~~~G~a~Dl~~~~~~~~v~~~~~-   60 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP--------------------VTPGVAVDLSHIPTAVKIKGFSG-   60 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST--------------------THHHHHHHHHTSCSSEEEEEECS-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC--------------------CchhHHHHhhCCCCCceEEEecC-
Confidence            799999 899999999999875 54 5899998762                    11122344444433344544321 


Q ss_pred             CcccccCCcccccccceEEecC
Q psy17422         91 PQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                           ..+.+-+++.|+||.+.
T Consensus        61 -----~~~~~~~~~aDivii~a   77 (312)
T 3hhp_A           61 -----EDATPALEGADVVLISA   77 (312)
T ss_dssp             -----SCCHHHHTTCSEEEECC
T ss_pred             -----CCcHHHhCCCCEEEEeC
Confidence                 23456678999999973

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=80.07  E-value=1.4  Score=46.34  Aligned_cols=35  Identities=9%  Similarity=0.142  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |..++|+|+|+|++|..+++.|...|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            677899999999999999999999998 68888764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=80.06  E-value=1.8  Score=45.52  Aligned_cols=36  Identities=14%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      +...|+|||+|.+|+.+|..|+..|.+ ++|+|.+.+
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~-V~llE~~~~   37 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLS-VLMLEAQDL   37 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSST
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence            456899999999999999999999985 999997644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	512
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	1e-105
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	5e-33
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	6e-19
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	0.002
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	4e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	0.003

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  321 bits (825), Expect = e-105
 Identities = 166/357 (46%), Positives = 229/357 (64%), Gaps = 38/357 (10%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
           FFL   SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T LPE
Sbjct: 69  FFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPE 128

Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
           +T + L+  LW+  IPLL CR+YG +G +R+ I EH +IESHPDN   DLRLDKP+P L 
Sbjct: 129 STSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELR 188

Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
           ++  S DLD +E KDH H P++VI+ KYL  W S+ N + +PK YKEK++ R+LIR G  
Sbjct: 189 EHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQG-- 245

Query: 301 KDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFA 360
                                              I K+ENG P  EENFEEA+K VN A
Sbjct: 246 -----------------------------------ILKNENGAPEDEENFEEAIKNVNTA 270

Query: 361 LIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD 420
           L  T +PSS+  I ND+ C+N+T ++  FWILA+A+K+FV  EG GNLP+RG++PDM AD
Sbjct: 271 LNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIAD 330

Query: 421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
           + +YI LQ +YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V
Sbjct: 331 SGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV 387

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 5e-33
 Identities = 72/115 (62%), Positives = 88/115 (76%)

Query: 1   LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
           LWGDHGQ ALESA +CLINAT  GTEILK+LVLPG+GSFTIIDG ++S +D G NFFL  
Sbjct: 14  LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQR 73

Query: 61  DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
            SIGK+RAE A + L ELN D  G FV+E+P+ L+ NDP+FF  F +V++T  P 
Sbjct: 74  SSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPE 128

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 6e-19
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
            +  Q  L++ ++ +I A GLG E+LK+L L G     +ID + I   +L   F      
Sbjct: 28  TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 87

Query: 63  IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
           IG+ +AEVA + L +  P+C    V  +   +   +  F++ FH+++     I
Sbjct: 88  IGRPKAEVAAEFLNDRVPNC---NVVPHFNKIQDFNDTFYRQFHIIVCGLDSI 137

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 14/135 (10%)

Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQ----GDFVDENPQVLMANDPNFFQSFHMVIST 176
           F      IG+ +AEVA + L +  P+C      + + +                  +I+ 
Sbjct: 81  FLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIAR 140

Query: 177 NLPETTLIELSKT-----LWSLNIPLLACRSYGFIGSIRLQISEHT-----IIESHPDNT 226
                 LI L          S  +PL+   + GF G+ R+ +   T      +E +P   
Sbjct: 141 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 200

Query: 227 NPDLRLDKPWPSLIQ 241
           N  +      P L +
Sbjct: 201 NFPMCTIASMPRLPE 215

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 63.8 bits (154), Expect = 4e-12
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 3   GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
              GQ AL+ +R+ ++   GLG    + L   GVG+ T++D + +S  +L         +
Sbjct: 21  DFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDAT 80

Query: 63  IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
           +G+ + E A   L  +NP      V+    +  A          +V+     +
Sbjct: 81  VGQPKVESARDALTRINPHIAITPVNAL--LDDAELAALIAEHDLVLDCTDNV 131

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 15/69 (21%), Positives = 26/69 (37%)

Query: 444 RRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPY 503
             A+    Q+ +         V         I ++ ++  LKL DFGS +   +   T +
Sbjct: 110 ELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDF 169

Query: 504 LVSRFYRAP 512
             +R Y  P
Sbjct: 170 DGTRVYSPP 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	512
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	99.96
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.69
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.66
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.66
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.65
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.65
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.61
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.61
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.58
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.57
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.56
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.56
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.55
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.55
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.55
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.54
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.53
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.52
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.51
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.5
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.5
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.5
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.5
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.49
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.48
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.48
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.47
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.44
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.44
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.43
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.43
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.43
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.43
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.42
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.42
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.42
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.41
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.4
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.39
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.39
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.39
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.37
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.36
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.36
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.34
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.31
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.31
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.3
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.29
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.29
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.24
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.23
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.23
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.23
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.2
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.18
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.17
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.14
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.08
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.68
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.59
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	97.5
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.03
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.87
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.85
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.74
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.58
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.4
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.34
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.99
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.82
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.78
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.47
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.45
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.45
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.4
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.36
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.34
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.29
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.13
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.12
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.09
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.9
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.73
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.67
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.53
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.5
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.37
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.36
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.3
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.15
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.1
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.97
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.96
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.8
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.8
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.68
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.65
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.63
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.59
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.56
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.54
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.22
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.2
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.19
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.13
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	93.09
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.82
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.52
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.45
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.28
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.19
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.99
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.99
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.63
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.54
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.39
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.29
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.27
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.25
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.2
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.99
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.94
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.71
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.65
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.63
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.52
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.89
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.72
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.67
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.56
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.42
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.29
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.02
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.93
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	88.79
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.72
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	88.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.63
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.57
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.49
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.36
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.29
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.28
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.26
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.26
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	88.12
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.99
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	87.95
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.8
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	87.78
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.71
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.64
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	87.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	87.36
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	87.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	87.11
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	86.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	86.7
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.47
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.44
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	86.34
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.29
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.08
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	85.99
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	85.82
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	85.46
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.27
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.05
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.96
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.82
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	84.81
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.68
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	84.68
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	84.57
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.42
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.36
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.18
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.68
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.57
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.44
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	83.44
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	83.39
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	83.38
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.32
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	83.29
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.12
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.04
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	82.94
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.93
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	82.7
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.63
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	82.24
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.21
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	82.02
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.93
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	81.9
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.89
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	81.86
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	81.86
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.38
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.35
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	81.33
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	81.12
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	81.05
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.0
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	80.98
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.9
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.16
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	80.08
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	80.03

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-75  Score=627.15  Aligned_cols=380  Identities=54%  Similarity=0.975  Sum_probs=357.1

Q ss_pred             CCCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC
Q psy17422          1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP   80 (512)
Q Consensus         1 LwG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp   80 (512)
                      |||.+||++|++++|||+|+||+|||+||||+|+|||+|||+|+|.|+.+||+||||++.+|+|++||++++++|+++||
T Consensus        14 lwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp   93 (529)
T d1yova1          14 LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS   93 (529)
T ss_dssp             HHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCT
T ss_pred             hhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhc
Q psy17422         81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM  160 (512)
Q Consensus        81 ~v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  160 (512)
                      +|+++.+...+.                                                                 .++
T Consensus        94 ~v~i~~~~~~~~-----------------------------------------------------------------~~~  108 (529)
T d1yova1          94 DVSGSFVEESPE-----------------------------------------------------------------NLL  108 (529)
T ss_dssp             TSBCCEESSCHH-----------------------------------------------------------------HHH
T ss_pred             CCcEEEEcCCch-----------------------------------------------------------------hhh
Confidence            999988877665                                                                 334


Q ss_pred             cCCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEEeCCceeecCCCCCCCCCCccccChhhHH
Q psy17422        161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI  240 (512)
Q Consensus       161 ~~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~p~~~~~dlr~~~p~p~L~  240 (512)
                      .++++|+.+||+||+|.++.+.+..++++|+++++|+|.+++.|++||+|+++++|+++++||++..+|+|+..|||+|.
T Consensus       109 ~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~~~~~~e~~p~~~~~dlrl~~p~p~l~  188 (529)
T d1yova1         109 DNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELR  188 (529)
T ss_dssp             HSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECSCEEESCCCCSSCCCCCCSSSCCHHHH
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeCCceEEecCCCCCCCccccCCCcHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccccccccCccHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCCccHHHHHHHh
Q psy17422        241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAV  320 (512)
Q Consensus       241 ~~~~~~d~~~l~~~~~~~ip~~~~l~~~l~~~~~~~~~~~~p~~~~e~~~~~~~i~~~~r~~~~~~~~~e~nf~ea~~~~  320 (512)
                      ++++++|+++++...|+|+||+++++++|.+|+..|++. .|.+.+|+.+|++++.+++++..++...+|+||       
T Consensus       189 ~~~~~~d~~~~~~~~~~~vP~~vil~~~l~~~~~~~~g~-~p~~~~ek~~~k~~i~~~~~~~~~~~~~~eeNf-------  260 (529)
T d1yova1         189 EHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQGILKNENGAPEDEENF-------  260 (529)
T ss_dssp             HHHHTCCSSSSCHHHHTTSCHHHHHHHHHHHHHHHTCCC-CCCTTTHHHHHHHHHHTSSCBCTTSSBCCCHHH-------
T ss_pred             HHHhhcCcccCCccccCcCchHHHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHHHHhhhhcccccCCCccccH-------
Confidence            999999999999999999999999999999999999988 899999999999999999988777777789999       


Q ss_pred             hhhcccCCCCcchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhh
Q psy17422        321 NFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       321 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~  400 (512)
                                                    +||++++++.+++..+|++++++|++.+|.|+...+..||++++|+|+|+
T Consensus       261 ------------------------------~EA~~~~~~~~~~~~ip~~i~~ll~~~~~~~~~~~s~~Fw~l~~alk~F~  310 (529)
T d1yova1         261 ------------------------------EEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFV  310 (529)
T ss_dssp             ------------------------------HHHHHHHHHHSSCCSCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             ------------------------------HHHHHHHHHhhCCCCCCHHHHHHhcCcccccCCCCCccHHHHHHHHHHHH
Confidence                                          56666666666777899999999999888888888899999999999999


Q ss_pred             hcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCCCCCCCChHHHHhhccccccccccCC
Q psy17422        401 DNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~h~~~I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      .++++|.+|+.|.+|||.++|..|++||++|++|+..|...+..++.+++..++.....|.+.+|+.||||..++.++++
T Consensus       311 ~~~~~g~lPl~g~lPDm~s~t~~Yi~Lq~iY~~Ka~~D~~~~~~~v~~~l~~~~~~~~~i~~~~i~~F~kn~~~l~~~~~  390 (529)
T d1yova1         311 AKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRC  390 (529)
T ss_dssp             HTTTSSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTTTSCEEECC
T ss_pred             HhcCCCCCCCCCCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHhhhhhcceecc
Confidence            88889999999999999999999999999999999999999999999999999987788999999999999999999887


Q ss_pred             CCe
Q psy17422        481 KLV  483 (512)
Q Consensus       481 ~~~  483 (512)
                      +..
T Consensus       391 ~~l  393 (529)
T d1yova1         391 RSL  393 (529)
T ss_dssp             CCH
T ss_pred             Cch
Confidence            543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=260.33  Aligned_cols=168  Identities=26%  Similarity=0.410  Sum_probs=142.4

Q ss_pred             HHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCe
Q psy17422          4 DHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQ   83 (512)
Q Consensus         4 ~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~   83 (512)
                      ...|..|+++||||||+||+|||++|||+++|||+|+|+|+|+|+.+||+|||||+.+|+|++||++++++|+++||+++
T Consensus        29 e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~  108 (426)
T d1yovb1          29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN  108 (426)
T ss_dssp             SHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCC
Q psy17422         84 GDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMAND  163 (512)
Q Consensus        84 i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  163 (512)
                      +.++...+.                                                                    ...
T Consensus       109 i~~~~~~i~--------------------------------------------------------------------~~~  120 (426)
T d1yovb1         109 VVPHFNKIQ--------------------------------------------------------------------DFN  120 (426)
T ss_dssp             CEEECSCGG--------------------------------------------------------------------GBC
T ss_pred             eEeeecccc--------------------------------------------------------------------chH
Confidence            999887775                                                                    112


Q ss_pred             CCCCccccEEEEcCCChHHHHHHHHHHH------------hCCCcEEEEeeeceeEEEEEEeCCc-eeecCCCCCCCCCC
Q psy17422        164 PNFFQSFHMVISTNLPETTLIELSKTLW------------SLNIPLLACRSYGFIGSIRLQISEH-TIIESHPDNTNPDL  230 (512)
Q Consensus       164 ~~~~~~~~~Vi~~~~~~~~~~~l~~~~~------------~~~ip~i~~~~~G~~G~v~~~~~~~-~~~~~~p~~~~~dl  230 (512)
                      .+++++||+||+|.|+..++..+++.|+            +.++|+|.+++.|+.|++++++|++ .++++..+...+  
T Consensus       121 ~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~G~~~vi~p~~t~Cy~C~~~~~p~--  198 (426)
T d1yovb1         121 DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP--  198 (426)
T ss_dssp             HHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCC--
T ss_pred             HHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeEEEEEEECCCCCCCcCcCCCCCCC--
Confidence            3567889999999999999999999997            4578999999999999999999873 233332111111  


Q ss_pred             ccccChhhHHH
Q psy17422        231 RLDKPWPSLIQ  241 (512)
Q Consensus       231 r~~~p~p~L~~  241 (512)
                      +...|.|++..
T Consensus       199 ~~~~p~CTi~~  209 (426)
T d1yovb1         199 QVNFPMCTIAS  209 (426)
T ss_dssp             CCCCCHHHHHH
T ss_pred             CCCCCcccccC
Confidence            23456676554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.5e-29  Score=244.42  Aligned_cols=144  Identities=21%  Similarity=0.317  Sum_probs=132.7

Q ss_pred             CCHHHHHHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCC
Q psy17422          2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPD   81 (512)
Q Consensus         2 wG~~~Q~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~   81 (512)
                      +|.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||++++++|+++||+
T Consensus        20 ~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~   99 (247)
T d1jw9b_          20 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH   99 (247)
T ss_dssp             THHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhcc
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMA  161 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  161 (512)
                      ++++.+...+..                                                                   .
T Consensus       100 ~~i~~~~~~~~~-------------------------------------------------------------------~  112 (247)
T d1jw9b_         100 IAITPVNALLDD-------------------------------------------------------------------A  112 (247)
T ss_dssp             SEEEEECSCCCH-------------------------------------------------------------------H
T ss_pred             cchhhhhhhhhh-------------------------------------------------------------------c
Confidence            999998876650                                                                   0


Q ss_pred             CCCCCCccccEEEEcCCChHHHHHHHHHHHhCCCcEEEEeeeceeEEEEEE
Q psy17422        162 NDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQ  212 (512)
Q Consensus       162 ~~~~~~~~~~~Vi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~  212 (512)
                      +...++..+|+|+++.++...+..++++|+++++|++.+++.|+.|++...
T Consensus       113 ~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~~~g~~~~~  163 (247)
T d1jw9b_         113 ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVF  163 (247)
T ss_dssp             HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEE
T ss_pred             cccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccccccceEEE
Confidence            112345678999999999999999999999999999999999999998765

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.1e-19  Score=180.33  Aligned_cols=147  Identities=17%  Similarity=0.316  Sum_probs=113.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.       .+|+|.++.... ...... .+|  +|+.++||||++..+.|.           .+++  
T Consensus        20 g~V~~~~~~~~~~-------~vAiK~i~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~-----------~~~~--   78 (322)
T d1s9ja_          20 GVVFKVSHKPSGL-------VMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYIVGFYGAFY-----------SDGE--   78 (322)
T ss_dssp             CCEEEEEETTTTE-------EEEEEEEECCCC-TTHHHHHHHHGGGGGGCCCTTBCCEEEEEE-----------CSSE--
T ss_pred             eEEEEEEECCCCc-------EEEEEEEChhhC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----------ECCE--
Confidence            7788888888887       899999865432 222233 466  789999999998888772           2222  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhccccccccccCCCCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        ++.+||+|.. ++..++.      +....+...++.++.|++.|+.| |. ++|+|||||     |+||++.. ++.+
T Consensus        79 --~~iVmEy~~gg~L~~~l~------~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiK-----P~NILl~~-~~~v  144 (322)
T d1s9ja_          79 --ISICMEHMDGGSLDQVLK------KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK-----PSNILVNS-RGEI  144 (322)
T ss_dssp             --EEEEEECCTTEEHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCS-----GGGEEECT-TCCE
T ss_pred             --EEEEEEcCCCCcHHHHHh------hcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccC-----HHHeeECC-CCCE
Confidence              8899999985 5555543      33458899999999999999999 96 599999999     99999975 5899


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+.......+.++||++||||
T Consensus       145 kl~DFGla~~~~~~~~~~~~GT~~Y~AP  172 (322)
T d1s9ja_         145 KLCDFGVSGQLIDSMANSFVGTRSYMSP  172 (322)
T ss_dssp             EECCCCCCHHHHHHTC---CCSSCCCCH
T ss_pred             EEeeCCCccccCCCccccccCCccccCc
Confidence            9999999985433445678999999998

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.7e-18  Score=166.34  Aligned_cols=153  Identities=15%  Similarity=0.120  Sum_probs=115.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+............ .+|  +|+.++||||++..+.|.           ....+.
T Consensus        23 g~Vy~~~~~~~~~-------~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~-----------~~~~~~   84 (270)
T d1t4ha_          23 KTVYKGLDTETTV-------EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWE-----------STVKGK   84 (270)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----------EESSSC
T ss_pred             cEEEEEEECCCCe-------EEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEe-----------eccccC
Confidence            7788888888887       8999987654322111122 344  689999999998776652           111122


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC--CChHHHHhhccccccccccCCCCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA--ITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~--I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      ..++.+||+|.. ++..++.      +....+...++.++.|++.|+.| |.++  |+|||||     |+||++....+.
T Consensus        85 ~~~~ivmE~~~~g~L~~~l~------~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiK-----p~NILl~~~~~~  153 (270)
T d1t4ha_          85 KCIVLVTELMTSGTLKTYLK------RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK-----CDNIFITGPTGS  153 (270)
T ss_dssp             EEEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCC-----GGGEEESSTTSC
T ss_pred             CEEEEEEeCCCCCcHHHHHh------ccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcC-----hhhceeeCCCCC
Confidence            347889999985 6555553      33457888999999999999999 9988  9999999     999999755578


Q ss_pred             EEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+|+....+.....+||+.|+||
T Consensus       154 ~Kl~DFGla~~~~~~~~~~~~GT~~Y~aP  182 (270)
T d1t4ha_         154 VKIGDLGLATLKRASFAKAVIGTPEFMAP  182 (270)
T ss_dssp             EEECCTTGGGGCCTTSBEESCSSCCCCCG
T ss_pred             EEEeecCcceeccCCccCCcccCccccCH
Confidence            99999999986555555678999999998

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-18  Score=167.70  Aligned_cols=147  Identities=18%  Similarity=0.084  Sum_probs=112.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+....... .... .+|  +|+.++||||++..+.|.           .++   
T Consensus        19 g~V~~~~~~~~~~-------~vAiK~i~~~~~~~-~~~~~~~Ei~~l~~l~HpnIv~~~~~~~-----------~~~---   76 (271)
T d1nvra_          19 GEVQLAVNRVTEE-------AVAVKIVDMKRAVD-CPENIKKEICINKMLNHENVVKFYGHRR-----------EGN---   76 (271)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECC--------CHHHHHHHHHTCCCTTBCCEEEEEE-----------ETT---
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehhhcch-HHHHHHHHHHHHHhCCCCCEeeEeeeec-----------cCc---
Confidence            7788999988888       89999886532211 1222 344  789999999998777662           222   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       -++.+||++.. ++..++      +.+...+...++.++.|++.|+.| |.++|+|||||     |+||++.. ++.+|
T Consensus        77 -~~~ivmEy~~gg~L~~~l------~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiK-----p~NILl~~-~~~~K  143 (271)
T d1nvra_          77 -IQYLFLEYCSGGELFDRI------EPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK-----PENLLLDE-RDNLK  143 (271)
T ss_dssp             -EEEEEEECCTTEEGGGGS------BTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECT-TCCEE
T ss_pred             -eeEEEEeccCCCcHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCccc-----HHHEEECC-CCCEE
Confidence             27899999985 554443      344458899999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+..    .....+.++||+.|+||
T Consensus       144 L~DFG~a~~~~~~~~~~~~~~~~GT~~Y~AP  174 (271)
T d1nvra_         144 ISDFGLATVFRYNNRERLLNKMCGTLPYVAP  174 (271)
T ss_dssp             ECCCTTCEECEETTEECCBCCCCSCGGGSCT
T ss_pred             EccchhheeeccCCccccccceeeCcCccCH
Confidence            9999999732    22345678999999999

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.6e-18  Score=169.28  Aligned_cols=148  Identities=16%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|.++.++.+|.       .+|+|.+.+..  ....+..-.+|  +|+.++||||+.+...|.           .+.  
T Consensus        19 g~V~~~~~~~~~~-------~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-----------~~~--   78 (337)
T d1o6la_          19 GKVILVREKATGR-------YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ-----------THD--   78 (337)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEE-----------CSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeec-----------ccc--
Confidence            7888999988888       99999886542  22233333455  799999999998887772           222  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.+|++|.. ++..++      +.+...++..++.++.|++.|+.| |.++|+|||||     |+||++.. .+.+
T Consensus        79 --~~~iv~ey~~gg~L~~~~------~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlK-----P~NILl~~-~g~v  144 (337)
T d1o6la_          79 --RLCFVMEYANGGELFFHL------SRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK-----LENLMLDK-DGHI  144 (337)
T ss_dssp             --EEEEEEECCTTCBHHHHH------HHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSCE
T ss_pred             --ccccceeccCCCchhhhh------hcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccC-----HHHeEecC-CCCE
Confidence              28899999985 444443      344567888999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+..  .......++||++|+||
T Consensus       145 kl~DFG~a~~~~~~~~~~~~~~GT~~Y~aP  174 (337)
T d1o6la_         145 KITDFGLCKEGISDGATMKTFCGTPEYLAP  174 (337)
T ss_dssp             EECCCTTCBCSCCTTCCBCCCEECGGGCCG
T ss_pred             EEeecccccccccCCcccccceeCHHHhhh
Confidence            99999999843  34456789999999998

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.5e-18  Score=164.67  Aligned_cols=148  Identities=16%  Similarity=0.087  Sum_probs=116.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc-CCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL-IPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~-~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.++.+|.       .+|+|.+.+.. ........ .+|  +++.++||||++..+.|.           .++  
T Consensus        20 g~Vy~~~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----------~~~--   79 (263)
T d2j4za1          20 GNVYLAREKQSKF-------ILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----------DAT--   79 (263)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------CSS--
T ss_pred             cEEEEEEECCCCc-------EEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEE-----------ECC--
Confidence            6788899888888       89999876432 22333334 344  789999999998877662           222  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.+||+|.. ++..++.      .....+...++.++.|++.|+.| |.++|+|||||     |+||++... +.+
T Consensus        80 --~~~ivmEy~~~g~L~~~l~------~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiK-----p~Nill~~~-~~~  145 (263)
T d2j4za1          80 --RVYLILEYAPLGTVYRELQ------KLSKFDEQRTATYITELANALSYCHSKRVIHRDIK-----PENLLLGSA-GEL  145 (263)
T ss_dssp             --EEEEEEECCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECTT-SCE
T ss_pred             --EEEEEEeecCCCcHHHHHh------hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeec-----cccceecCC-CCE
Confidence              27899999985 5555543      33457889999999999999999 99999999999     999999754 889


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+..+......++||+.|+||
T Consensus       146 kl~DFG~a~~~~~~~~~~~~Gt~~Y~AP  173 (263)
T d2j4za1         146 KIADFGWSVHAPSSRRTTLCGTLDYLPP  173 (263)
T ss_dssp             EECCCCSCSCCCCCCCEETTEEGGGCCH
T ss_pred             eecccceeeecCCCcccccCCCCcccCH
Confidence            9999999986655556678899999998

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3e-17  Score=163.46  Aligned_cols=149  Identities=14%  Similarity=0.107  Sum_probs=101.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      |.|+++.++.+|.       .+|+|.+.+.........-.+|  +|+.++||||++..+.|           ..++    
T Consensus        23 g~Vy~~~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~-----------~~~~----   80 (307)
T d1a06a_          23 SEVILAEDKRTQK-------LVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIY-----------ESGG----   80 (307)
T ss_dssp             GGEEEEEETTTCC-------EEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEE-----------ECSS----
T ss_pred             eEEEEEEECCCCC-------EEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EECC----
Confidence            7899999988888       8999988653322111111234  78999999999887766           2222    


Q ss_pred             ceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--CCCeE
Q psy17422        409 PLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--SKLVL  484 (512)
Q Consensus       409 Pl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--~~~~~  484 (512)
                      .++.+||+|. .++..++.      .+...+...+..++.|++.|+.| |.++|+|||||     |+||++..  ..+.+
T Consensus        81 ~~~lvmE~~~gg~L~~~l~------~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiK-----p~Nil~~~~~~~~~v  149 (307)
T d1a06a_          81 HLYLIMQLVSGGELFDRIV------EKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLK-----PENLLYYSLDEDSKI  149 (307)
T ss_dssp             EEEEEECCCCSCBHHHHHH------TCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEESSSSTTCCE
T ss_pred             EEEEEEeccCCCcHHHhhh------cccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEec-----ccceeecccCCCceE
Confidence            2889999998 56666653      34568899999999999999999 99999999999     99999853  34789


Q ss_pred             EEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+.. ........+||+.|+||
T Consensus       150 kl~DFG~a~~~~~~~~~~~~~GT~~y~AP  178 (307)
T d1a06a_         150 MISDFGLSKMEDPGSVLSTACGTPGYVAP  178 (307)
T ss_dssp             EECCC------------------CTTSCH
T ss_pred             EEeccceeEEccCCCeeeeeeeCccccCc
Confidence            99999999843 34445678999999998

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.9e-17  Score=161.53  Aligned_cols=149  Identities=21%  Similarity=0.249  Sum_probs=112.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCC---CCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIP---TTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~---~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      |.|+++.++.+|.       .+|+|.+......   ..+... .+|  +|+.++||||++..+.|           ..++
T Consensus        12 g~Vy~~~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~-----------~~~~   73 (299)
T d1ua2a_          12 ATVYKARDKNTNQ-------IVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF-----------GHKS   73 (299)
T ss_dssp             EEEEEEECSSCCS-------EEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE-----------CCTT
T ss_pred             eEEEEEEECCCCc-------EEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeee-----------ccCC
Confidence            6789999998888       8999988654321   122222 455  78999999999887766           2222


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      +    ++.+|++|..++..+     +...+...+...++.+++|++.||.| |.++|+|||||     |+||++.. .+.
T Consensus        74 ~----~~ivmE~~~~~~~~~-----~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiK-----p~NIli~~-~~~  138 (299)
T d1ua2a_          74 N----ISLVFDFMETDLEVI-----IKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK-----PNNLLLDE-NGV  138 (299)
T ss_dssp             C----CEEEEECCSEEHHHH-----HTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TCC
T ss_pred             c----eeehhhhhcchHHhh-----hhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCC-----cceEEecC-CCc
Confidence            2    789999998765333     23344557888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+|+..  .......+++|++|+||
T Consensus       139 ~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  169 (299)
T d1ua2a_         139 LKLADFGLAKSFGSPNRAYTHQVVTRWYRAP  169 (299)
T ss_dssp             EEECCCGGGSTTTSCCCCCCCSCCCCTTCCH
T ss_pred             cccccCccccccCCCcccccceecChhhccH
Confidence            999999999743  23345678999999998

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.7e-17  Score=160.40  Aligned_cols=145  Identities=17%  Similarity=0.218  Sum_probs=112.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.+..+|.       .+|+|.+.......  ... .+|  +|+.++||||++..+.|           ..++   
T Consensus        34 g~Vy~a~~~~~~~-------~vAvK~~~~~~~~~--~~~~~~E~~il~~l~HpnIv~~~~~~-----------~~~~---   90 (293)
T d1yhwa1          34 GTVYTAMDVATGQ-------EVAIRQMNLQQQPK--KELIINEILVMRENKNPNIVNYLDSY-----------LVGD---   90 (293)
T ss_dssp             CEEEEEEBTTTCC-------EEEEEEEEGGGCSC--HHHHHHHHHHHHHCCCTTBCCEEEEE-----------EETT---
T ss_pred             cEEEEEEECCCCC-------EEEEEEEecccChH--HHHHHHHHHHHHhCCCCCEeeEeEEE-----------EECC---
Confidence            7888998888888       89999876542211  122 445  78999999999877666           1222   


Q ss_pred             cceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       .++.+||+|... +..+      .. +...+...++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|
T Consensus        91 -~~~ivmEy~~gg~L~~~------~~-~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiK-----p~NILl~~-~~~vk  156 (293)
T d1yhwa1          91 -ELWVVMEYLAGGSLTDV------VT-ETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----SDNILLGM-DGSVK  156 (293)
T ss_dssp             -EEEEEEECCTTCBHHHH------HH-HSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEE
T ss_pred             -EEEEEEEecCCCcHHHH------hh-ccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCc-----HHHeEECC-CCcEe
Confidence             278999999854 4332      22 2358899999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+..  ........+||+.|+||
T Consensus       157 l~DFG~a~~~~~~~~~~~~~~gt~~Y~aP  185 (293)
T d1yhwa1         157 LTDFGFCAQITPEQSKRSTMVGTPYWMAP  185 (293)
T ss_dssp             ECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred             eccchhheeeccccccccccccCCCccCh
Confidence            9999999843  23345678999999998

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.7e-17  Score=160.00  Aligned_cols=148  Identities=18%  Similarity=0.213  Sum_probs=109.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+++.++.+|.       .+|+|.+.+..  .......-.+|  +|+.++||||++..+.|           ..++  
T Consensus        22 g~Vy~a~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----------~~~~--   81 (288)
T d1uu3a_          22 STVVLARELATSR-------EYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----------QDDE--   81 (288)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEE-----------ECSS--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEE-----------EECC--
Confidence            6788888888887       89999876432  22222222445  78999999999877666           2222  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        .++.+||+|.. ++..++.      .+...+...++.++.|++.|+.| |..+|+|||||     |+||++.. .+.+
T Consensus        82 --~~~ivmEy~~gg~L~~~~~------~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiK-----p~NIll~~-~~~v  147 (288)
T d1uu3a_          82 --KLYFGLSYAKNGELLKYIR------KIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLK-----PENILLNE-DMHI  147 (288)
T ss_dssp             --EEEEEECCCTTEEHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TSCE
T ss_pred             --EEEEEEEccCCCCHHHhhh------ccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCC-----ccccccCC-CceE
Confidence              28899999985 5544443      34457889999999999999999 99999999999     99999975 4889


Q ss_pred             EEecCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+..    .....+.++||+.|+||
T Consensus       148 kl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~AP  179 (288)
T d1uu3a_         148 QITDFGTAKVLSPESKQARANSFVGTAQYVSP  179 (288)
T ss_dssp             EECCCTTCEECC----------CCCCGGGCCH
T ss_pred             EecccccceecccCCcccccccccCCccccCc
Confidence            99999999732    22335567999999998

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=6.6e-17  Score=161.14  Aligned_cols=147  Identities=18%  Similarity=0.145  Sum_probs=110.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCC-CchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTT-VPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~-i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+++.+..+|.       .+|+|.+........ .-.. .+|  +|+.++||||++..+.|           ...+  
T Consensus        29 g~Vy~a~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----------~~~~--   88 (309)
T d1u5ra_          29 GAVYFARDVRNSE-------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCY-----------LREH--   88 (309)
T ss_dssp             SEEEEEEETTTTE-------EEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------EETT--
T ss_pred             eEEEEEEECCCCc-------EEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEE-----------EECC--
Confidence            6788888887777       899998865321111 0011 345  68999999999877665           1221  


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        .++.+|++|..++.....     ..+...+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|
T Consensus        89 --~~~iv~E~~~~g~l~~~~-----~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiK-----p~NILl~~-~~~~K  155 (309)
T d1u5ra_          89 --TAWLVMEYCLGSASDLLE-----VHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK-----AGNILLSE-PGLVK  155 (309)
T ss_dssp             --EEEEEEECCSEEHHHHHH-----HHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS-----GGGEEEET-TTEEE
T ss_pred             --EEEEEEEecCCCchHHHH-----HhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCC-----cceEEECC-CCCEE
Confidence              288999999866533221     223458899999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+....  ...++||+.|+||
T Consensus       156 l~DFG~a~~~~~--~~~~~GT~~Y~AP  180 (309)
T d1u5ra_         156 LGDFGSASIMAP--ANSFVGTPYWMAP  180 (309)
T ss_dssp             ECCCTTCBSSSS--BCCCCSCGGGCCH
T ss_pred             EeecccccccCC--CCccccCccccCH
Confidence            999999985432  3467899999998

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.1e-16  Score=160.07  Aligned_cols=148  Identities=19%  Similarity=0.130  Sum_probs=114.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+++.++.+|.       .+|+|.+.+... ....... .+|  +|+.++||||+++.+.|.           ..+  
T Consensus        18 g~Vy~a~~~~~g~-------~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~-----------~~~--   77 (316)
T d1fota_          18 GRVHLIRSRHNGR-------YYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQ-----------DAQ--   77 (316)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEE-----------CSS--
T ss_pred             cEEEEEEECCCCC-------EEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEe-----------eCC--
Confidence            6788999888888       899998865321 1122222 344  789999999998877762           222  


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                        .++.+|++|...+     |......+...+...++.++.|++.|+.| |.++|+|||||     |+||++.. ++.+|
T Consensus        78 --~~~ivmE~~~gg~-----l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiK-----p~NILl~~-~g~vk  144 (316)
T d1fota_          78 --QIFMIMDYIEGGE-----LFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLK-----PENILLDK-NGHIK  144 (316)
T ss_dssp             --EEEEEECCCCSCB-----HHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----GGGEEECT-TSCEE
T ss_pred             --eeeeEeeecCCcc-----ccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccC-----chheeEcC-CCCEE
Confidence              3889999998654     33334455567888999999999999999 99999999999     99999975 58999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+..... .+..+||+.|+||
T Consensus       145 L~DFG~a~~~~~~-~~~~~Gt~~Y~AP  170 (316)
T d1fota_         145 ITDFGFAKYVPDV-TYTLCGTPDYIAP  170 (316)
T ss_dssp             ECCCSSCEECSSC-BCCCCSCTTTCCH
T ss_pred             EecCccceEeccc-cccccCcccccCH
Confidence            9999999854332 3467899999998

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4e-17  Score=161.13  Aligned_cols=148  Identities=17%  Similarity=0.186  Sum_probs=111.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      |.|+++.++.+|.       .+|+|.+.... ...+..-.+|  +|+.++||||++..+.|.           .++    
T Consensus        26 g~Vy~~~~~~~~~-------~vAvK~i~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-----------~~~----   82 (288)
T d2jfla1          26 GKVYKAQNKETSV-------LAAAKVIDTKS-EEELEDYMVEIDILASCDHPNIVKLLDAFY-----------YEN----   82 (288)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECSS-SGGGGGTHHHHHHHHHCCCTTBCCEEEEEE-----------ETT----
T ss_pred             cEEEEEEECCCCe-------EEEEEEECcCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----------eCC----
Confidence            6788888888887       88999876532 1222222455  789999999998877661           222    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .++.+||+|.. ++..++.     +.+...+...++.++.|++.|+.| |.++|+|||||     |+||++.. .+.+|+
T Consensus        83 ~~~lvmEy~~~g~L~~~~~-----~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiK-----p~NIll~~-~~~~Kl  151 (288)
T d2jfla1          83 NLWILIEFCAGGAVDAVML-----ELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLK-----AGNILFTL-DGDIKL  151 (288)
T ss_dssp             EEEEEEECCTTEEHHHHHH-----HHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCEEE
T ss_pred             eEEEEEecCCCCcHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecC-----hhheeECC-CCCEEE
Confidence            27899999985 4444432     123347889999999999999999 99999999999     99999975 488999


Q ss_pred             ecCCCCCCCC--CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH--ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~--~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+...  .......+||+.|+||
T Consensus       152 ~DFG~a~~~~~~~~~~~~~~Gt~~y~AP  179 (288)
T d2jfla1         152 ADFGVSAKNTRTIQRRDSFIGTPYWMAP  179 (288)
T ss_dssp             CCCTTCEECHHHHHHHTCCCSCCTTCCH
T ss_pred             EechhhhccCCCcccccccccccccCCH
Confidence            9999987332  2234568899999998

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.5e-17  Score=158.47  Aligned_cols=154  Identities=18%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.       .+|+|.+............ .+|  +|+.++||||++..+.|          .+..   .
T Consensus        18 g~Vy~~~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~----------~~~~---~   77 (269)
T d2java1          18 GRCQKIRRKSDGK-------ILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRI----------IDRT---N   77 (269)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEE----------EC------
T ss_pred             eEEEEEEECCCCC-------EEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEE----------EeCC---C
Confidence            6789999998888       8999987653221111111 344  68889999999876655          1211   1


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCC-----CChHHHHhhccccccccccCC
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSA-----ITEAQVKLFCRNASFIHVNES  480 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~-----I~hrdIK~Fc~n~~nIll~~~  480 (512)
                      -.++.+||+|.. ++..++.  +..+.+...+...+..++.|++.|+.| |..+     |+|||||     |+||++.. 
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~--~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiK-----p~NIll~~-  149 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVIT--KGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK-----PANVFLDG-  149 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHH--HHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CC-----GGGEEECT-
T ss_pred             CEEEEEEecCCCCcHHHHHH--hccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCc-----hhhcCcCC-
Confidence            237899999984 7777664  222334458899999999999999999 8754     9999999     99999975 


Q ss_pred             CCeEEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        481 KLVLKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       481 ~~~~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      .+.+|++|||+|+..  .....+.++||++|+||
T Consensus       150 ~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~AP  183 (269)
T d2java1         150 KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSP  183 (269)
T ss_dssp             TSCEEECCHHHHHHC-----------CCCSCCCH
T ss_pred             CCcEEEeeccceeecccCCCccccCCCCcccCCH
Confidence            489999999998732  23334678999999998

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.2e-16  Score=159.92  Aligned_cols=147  Identities=15%  Similarity=0.109  Sum_probs=111.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|+++.++.+|.       .+|+|.+.+..  ....+....+|  +|+.++||||++..+.|           ....  
T Consensus        55 g~Vy~a~~~~~g~-------~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----------~~~~--  114 (350)
T d1rdqe_          55 GRVMLVKHKESGN-------HYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----------KDNS--  114 (350)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----------ECSS--
T ss_pred             cEEEEEEECCCCC-------EEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccc-----------cccc--
Confidence            6788888888887       89999875432  22222222455  78999999999877666           1111  


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeE
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVL  484 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~  484 (512)
                        -++.+++++.. ++..++      ..+...+...++.++.|++.||.| |.++|+|||||     |+||++.. ++.+
T Consensus       115 --~~~~v~e~~~~g~l~~~l------~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIK-----P~NILl~~-~g~i  180 (350)
T d1rdqe_         115 --NLYMVMEYVAGGEMFSHL------RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLK-----PENLLIDQ-QGYI  180 (350)
T ss_dssp             --EEEEEEECCTTCBHHHHH------HHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TSCE
T ss_pred             --ccccccccccccchhhhH------hhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCC-----HHHcccCC-CCCE
Confidence              27788999875 444443      233458899999999999999999 99999999999     99999975 4899


Q ss_pred             EEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ||+|||+|+..... ...++||+.|+||
T Consensus       181 kL~DFG~a~~~~~~-~~~~~Gt~~Y~AP  207 (350)
T d1rdqe_         181 QVTDFGFAKRVKGR-TWTLCGTPEALAP  207 (350)
T ss_dssp             EECCCTTCEECSSC-BCCCEECGGGCCH
T ss_pred             Eeeeceeeeecccc-cccccCccccCCH
Confidence            99999999854432 4568999999998

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=1.3e-16  Score=162.42  Aligned_cols=148  Identities=18%  Similarity=0.166  Sum_probs=112.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcC-CCCCchH-HH-----HHHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALI-PTTVPSS-VA-----SILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~-~~~i~~~-~~-----ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      |.|+++.++.+|.       .+|+|.+.+... ....... .+     ++++.++||||+.+.+.|           ..+
T Consensus        18 g~Vy~~~~~~t~~-------~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~-----------~~~   79 (364)
T d1omwa3          18 GEVYGCRKADTGK-------MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----------HTP   79 (364)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE-----------ECS
T ss_pred             eEEEEEEECCCCC-------EEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE-----------EEC
Confidence            6788888888888       899998753211 0111111 12     257778899999877766           222


Q ss_pred             CCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      +    .++.+|++|. .++..++.      .+...+...++.++.|++.||.| |.++|+|||||     |+||++.. .
T Consensus        80 ~----~~~ivmE~~~gg~L~~~l~------~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlK-----P~NILl~~-~  143 (364)
T d1omwa3          80 D----KLSFILDLMNGGDLHYHLS------QHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLK-----PANILLDE-H  143 (364)
T ss_dssp             S----EEEEEECCCCSCBHHHHHH------HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECS-S
T ss_pred             C----EEEEEEEecCCCcHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHCCccceeec-----cceeEEcC-C
Confidence            2    2889999998 56655553      33457788999999999999999 99999999999     99999975 4


Q ss_pred             CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        482 LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +.+|++|||+|+..........+||++|+||
T Consensus       144 g~iKl~DFGla~~~~~~~~~~~~GT~~y~AP  174 (364)
T d1omwa3         144 GHVRISDLGLACDFSKKKPHASVGTHGYMAP  174 (364)
T ss_dssp             SCEEECCCTTCEECSSSCCCSCCSCGGGCCH
T ss_pred             CcEEEeeeceeeecCCCcccccccccccchh
Confidence            8999999999985544455678999999998

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-16  Score=155.01  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC--------CCchHHHHHHhhCC--CCCCCcCCchhhhhHHhhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT--------TVPSSVASILNDNA--CVNLTSKSEPFWILAKAVKDFV  400 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~--------~i~~~~~ell~~~~--~~ni~~~~~~fw~l~~alk~F~  400 (512)
                      |.|+++.+..+|.       .+|+|.+.+.....        .+..++ ++|+.++  ||||++..+.|           
T Consensus        18 g~Vy~a~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~~~~~E~-~il~~l~~~h~nIv~~~~~~-----------   78 (273)
T d1xwsa_          18 GSVYSGIRVSDNL-------PVAIKHVEKDRISDWGELPNGTRVPMEV-VLLKKVSSGFSGVIRLLDWF-----------   78 (273)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEGGGCCCEEECTTCCEEEHHH-HHHHHHCSSSCSBCCEEEEE-----------
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehHHccchhhhhHHHHHHHHH-HHHHHhccCCCCccEEEEEE-----------
Confidence            6788999988888       89999986543211        122222 2566655  89999877766           


Q ss_pred             hcCCCCCcceeEEeccccC--ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        401 DNEGNGNLPLRGSLPDMTA--DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       401 ~~~~~~~lPl~~~lpdm~~--d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                      +..+.    ++.+|+++..  +...++      +.+...+...++.++.|++.|+.| |.++|+|||||     |+||++
T Consensus        79 ~~~~~----~~lv~e~~~~~~~l~~~~------~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiK-----p~NIll  143 (273)
T d1xwsa_          79 ERPDS----FVLILERPEPVQDLFDFI------TERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIK-----DENILI  143 (273)
T ss_dssp             ECSSE----EEEEEECCSSEEEHHHHH------HHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEE
T ss_pred             eeCCe----EEEEEEeccCcchHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCc-----ccceEE
Confidence            22222    7888998864  333333      334458899999999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ...++.+|++|||+|+.......+.++||+.|+||
T Consensus       144 ~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aP  178 (273)
T d1xwsa_         144 DLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPP  178 (273)
T ss_dssp             ETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCH
T ss_pred             ecCCCeEEECccccceecccccccccccCCCcCCH
Confidence            86668999999999986655667789999999998

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.2e-16  Score=154.86  Aligned_cols=150  Identities=23%  Similarity=0.280  Sum_probs=113.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.+............ .+|  +|+.++||||++..+.|           ...++  
T Consensus        16 g~Vy~~~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~-----------~~~~~--   75 (298)
T d1gz8a_          16 GVVYKARNKLTGE-------VVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVI-----------HTENK--   75 (298)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEE-----------EETTE--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccc-----------ccccc--
Confidence            7888999988888       8999998654433333344 556  78999999999877666           22222  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                        ++.++++|..++..++...    .....+...++.++.|++.||.| |..+|+|||||     |+||++.. .+.+|+
T Consensus        76 --~~iv~e~~~~~~~~~~~~~----~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiK-----peNIl~~~-~~~~kl  143 (298)
T d1gz8a_          76 --LYLVFEFLHQDLKKFMDAS----ALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK-----PQNLLINT-EGAIKL  143 (298)
T ss_dssp             --EEEEEECCSEEHHHHHHHT----TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSCEEE
T ss_pred             --eeEEEeecCCchhhhhhhh----cccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccC-----chheeecc-cCccee
Confidence              8899999987655444221    12347899999999999999999 99999999999     99999975 478999


Q ss_pred             ecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+.  .+.......++|+.|+||
T Consensus       144 ~DFG~a~~~~~~~~~~~~~~gt~~y~ap  171 (298)
T d1gz8a_         144 ADFGLARAFGVPVRTYTHEVVTLWYRAP  171 (298)
T ss_dssp             CSTTHHHHHCCCSBCTTCCBCCCTTCCH
T ss_pred             ccCCcceeccCCcccceeecccceeeeh
Confidence            99999873  334456678999999998

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.2e-16  Score=155.44  Aligned_cols=156  Identities=23%  Similarity=0.243  Sum_probs=116.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      |.|+++.++.+|.       .+|+|.+.+..  ... ....++|+.++|+||++..+.|...         .+..+..-+
T Consensus        34 g~Vy~a~~~~~~~-------~vAiK~i~~~~--~~~-~~Ei~il~~l~h~niv~~~~~~~~~---------~~~~~~~~~   94 (350)
T d1q5ka_          34 GVVYQAKLCDSGE-------LVAIKKVLQDK--RFK-NRELQIMRKLDHCNIVRLRYFFYSS---------GEKKDEVYL   94 (350)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECCS--SSC-CHHHHHHHHCCCTTBCCEEEEEEEC-----------CCSCCEE
T ss_pred             eEEEEEEECCCCC-------EEEEEEECccc--hHH-HHHHHHHHhcCCCCCCcEEEEEEec---------CccCCceEE
Confidence            7889999988888       89999886532  122 2223378999999999877666210         001112236


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecC
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDF  489 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~Df  489 (512)
                      +.++++|..++...+.  ...+.+...+...++.++.|++.||.| |+++|+|||||     |+||++......+|++||
T Consensus        95 ~lv~Ey~~~~~~~~l~--~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiK-----p~NILl~~~~~~~kl~DF  167 (350)
T d1q5ka_          95 NLVLDYVPETVYRVAR--HYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIK-----PQNLLLDPDTAVLKLCDF  167 (350)
T ss_dssp             EEEEECCSEEHHHHHH--HHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----GGGEEECTTTCCEEECCC
T ss_pred             EEEEeccCCccHHHHH--hhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----cceEEEecCCCceeEecc
Confidence            7899999877655543  333445568999999999999999999 99999999999     999999765568999999


Q ss_pred             CCCCC-CCCCCccCeeeeeeeccC
Q psy17422        490 GSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       490 Glar~-~~~~~~t~yv~tr~YraP  512 (512)
                      |+++. ........++||+.|+||
T Consensus       168 G~a~~~~~~~~~~~~~gt~~y~aP  191 (350)
T d1q5ka_         168 GSAKQLVRGEPNVSYICSRYYRAP  191 (350)
T ss_dssp             TTCEECCTTSCCCSCCSCTTSCCH
T ss_pred             cchhhccCCcccccccccccccCh
Confidence            99974 344556778999999998

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.51  E-value=2.3e-16  Score=159.87  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=113.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.       .+|+|.+.+...  .-... .+|  +|+.++||||++..+.|           ..++   
T Consensus        40 g~Vy~~~~~~~g~-------~vAvK~i~~~~~--~~~~~~~~E~~il~~l~HpnIv~~~~~~-----------~~~~---   96 (350)
T d1koaa2          40 GVVHRVTERATGN-------NFAAKFVMTPHE--SDKETVRKEIQTMSVLRHPTLVNLHDAF-----------EDDN---   96 (350)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECCCSH--HHHHHHHHHHHHHHHTCCTTBCCEEEEE-----------EETT---
T ss_pred             eEEEEEEECCCCC-------EEEEEEEcccch--hhHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EECC---
Confidence            7888898888887       899998754211  00111 244  68999999999887766           2222   


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC-CCCeE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE-SKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~-~~~~~  484 (512)
                       .++.+|++|.. ++..++.     +.+...+...++.++.|++.||.| |.++|+|||||     |+||++.. ..+.+
T Consensus        97 -~~~ivmE~~~gg~L~~~l~-----~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiK-----p~NIll~~~~~~~v  165 (350)
T d1koaa2          97 -EMVMIYEFMSGGELFEKVA-----DEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLK-----PENIMFTTKRSNEL  165 (350)
T ss_dssp             -EEEEEECCCCSCBHHHHHT-----CTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSTTSCCE
T ss_pred             -EEEEEEEcCCCCCHHHHHH-----hhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeec-----hhHeeeccCCCCeE
Confidence             28899999985 5545442     233458899999999999999999 99999999999     99999864 34789


Q ss_pred             EEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+. ........++||++|+||
T Consensus       166 kL~DFG~a~~~~~~~~~~~~~gT~~Y~aP  194 (350)
T d1koaa2         166 KLIDFGLTAHLDPKQSVKVTTGTAEFAAP  194 (350)
T ss_dssp             EECCCTTCEECCTTSCEEEECSCTTTCCH
T ss_pred             EEeecchheecccccccceecCcccccCH
Confidence            9999999984 334445678999999998

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1e-15  Score=150.87  Aligned_cols=149  Identities=19%  Similarity=0.208  Sum_probs=114.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC---CC-chH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT---TV-PSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE  403 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~---~i-~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~  403 (512)
                      |.|+++.++.+|.       .+|+|.+.+.....   .. ... .+|  +|+.++||||++..+.|           ..+
T Consensus        24 g~Vy~~~~~~~~~-------~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~-----------~~~   85 (293)
T d1jksa_          24 AVVKKCREKSTGL-------QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVY-----------ENK   85 (293)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ECS
T ss_pred             eEEEEEEECCCCC-------EEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EEC
Confidence            7788999888888       89999886543211   11 122 345  78999999999887766           222


Q ss_pred             CCCCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCC
Q psy17422        404 GNGNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESK  481 (512)
Q Consensus       404 ~~~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~  481 (512)
                      +    .++.+||+|.. ++..++.      .+...+...++.++.|++.|+.| |..+|+|||||     |+||++....
T Consensus        86 ~----~~~iv~E~~~gg~L~~~i~------~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiK-----p~Nill~~~~  150 (293)
T d1jksa_          86 T----DVILILELVAGGELFDFLA------EKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLK-----PENIMLLDRN  150 (293)
T ss_dssp             S----EEEEEEECCCSCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESCSS
T ss_pred             C----EEEEEEEcCCCccccchhc------cccccchhHHHHHHHHHHHHHHhhhhcceeecccc-----cceEEEecCC
Confidence            2    38899999984 6655553      33458899999999999999999 99999999999     9999997542


Q ss_pred             ---CeEEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        482 ---LVLKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       482 ---~~~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                         ..+|++|||+|+.. ........++|+.|+||
T Consensus       151 ~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~AP  185 (293)
T d1jksa_         151 VPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAP  185 (293)
T ss_dssp             SSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCH
T ss_pred             CcccceEecchhhhhhcCCCccccccCCCCcccCH
Confidence               25999999999743 34455677899999998

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-15  Score=152.59  Aligned_cols=148  Identities=17%  Similarity=0.094  Sum_probs=113.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhc--CCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFAL--IPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGN  405 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~--~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~  405 (512)
                      |.|+++.++.+|.       .+|+|.+.+..  ....+...++|   +...++||||++..+.|           ...+ 
T Consensus        16 g~Vy~~~~~~t~~-------~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~-----------~~~~-   76 (320)
T d1xjda_          16 GKVFLAEFKKTNQ-------FFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF-----------QTKE-   76 (320)
T ss_dssp             SEEEEEEETTTTE-------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----------ECSS-
T ss_pred             cEEEEEEECCCCC-------EEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEE-----------ccCC-
Confidence            6789999988888       89999986532  22333233444   34568999999877766           1211 


Q ss_pred             CCcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        406 GNLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       406 ~~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                         .++.+|++|.. ++..+++      .....++..++.++.|++.|+.| |.++|+|||||     |+||++.. .+.
T Consensus        77 ---~~yivmEy~~~g~L~~~i~------~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDik-----p~NiL~~~-~~~  141 (320)
T d1xjda_          77 ---NLFFVMEYLNGGDLMYHIQ------SCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLK-----LDNILLDK-DGH  141 (320)
T ss_dssp             ---EEEEEEECCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----GGGEEECT-TSC
T ss_pred             ---ceeEEEeecCCCcHHHHhh------ccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc-----ccceeecC-CCc
Confidence               38999999985 6655553      34457888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++..  .....+..+||++|+||
T Consensus       142 ~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aP  172 (320)
T d1xjda_         142 IKIADFGMCKENMLGDAKTNTFCGTPDYIAP  172 (320)
T ss_dssp             EEECCCTTCBCCCCTTCCBCCCCSCGGGCCH
T ss_pred             eeccccchhhhcccccccccccCCCCCcCCH
Confidence            999999999742  33445678999999998

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-15  Score=152.07  Aligned_cols=157  Identities=24%  Similarity=0.209  Sum_probs=112.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.+............ ++|  +|+.++|+|++.....|+.-.   ..|...+++  
T Consensus        24 g~Vy~a~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~---~~~~~~~~~--   91 (318)
T d3blha1          24 GEVFKARHRKTGQ-------KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKA---SPYNRCKGS--   91 (318)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------------C--
T ss_pred             eEEEEEEECCCCC-------EEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccc---ccccccCce--
Confidence            6788888888888       8999998766554444444 566  789999999998766653211   111111112  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                        ++.++++|..++..+.     ...........++.++.|++.|+.| |.++|+|||||     |+||++.. .+.+|+
T Consensus        92 --~~iv~e~~~~~~~~~~-----~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlK-----p~NILl~~-~~~~kl  158 (318)
T d3blha1          92 --IYLVFDFCEHDLAGLL-----SNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMK-----AANVLITR-DGVLKL  158 (318)
T ss_dssp             --EEEEEECCCEEHHHHH-----TCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TSCEEE
T ss_pred             --EEEEEeccCCCccchh-----hhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcC-----chheeecC-CCcEEe
Confidence              7889999987664332     1233457888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCC------CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~------~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++..      .......+++|++|+||
T Consensus       159 ~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aP  190 (318)
T d3blha1         159 ADFGLARAFSLAKNSQPNRYTNRVVTLWYRPP  190 (318)
T ss_dssp             CCCTTCEECCC-----CCCCCSCCSCGGGCCH
T ss_pred             eecceeeecccccccccccccceecCHHHhhH
Confidence            999998621      12334567999999998

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.50  E-value=3.6e-16  Score=158.49  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=112.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.       .+|+|.+......  -... .+|  +|+.++||||+++.+.|           ..++   
T Consensus        43 g~V~~a~~~~~~~-------~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnIv~~~~~~-----------~~~~---   99 (352)
T d1koba_          43 GVVHRCVEKATGR-------VFVAKFINTPYPL--DKYTVKNEISIMNQLHHPKLINLHDAF-----------EDKY---   99 (352)
T ss_dssp             EEEEEEEETTTCC-------EEEEEEEECCSHH--HHHHHHHHHHHHTTCCSTTBCCEEEEE-----------ECSS---
T ss_pred             eEEEEEEECCCCC-------EEEEEEECCcchh--HHHHHHHHHHHHHhCCCCCCCcEEEEE-----------EECC---
Confidence            7889999988888       8999987643210  0112 244  78999999999887766           2222   


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhh-ccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC-CCCeE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRD-QAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE-SKLVL  484 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~-ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~-~~~~~  484 (512)
                       .++.+|++|...+     |.+.+.. ....++..++.++.|++.||.| |.++|+|||||     |+||++.. ..+.+
T Consensus       100 -~~~ivmE~~~gg~-----L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiK-----p~NILl~~~~~~~v  168 (352)
T d1koba_         100 -EMVLILEFLSGGE-----LFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIK-----PENIMCETKKASSV  168 (352)
T ss_dssp             -EEEEEEECCCCCB-----HHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSTTCCCE
T ss_pred             -EEEEEEEcCCCCh-----HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccc-----cccccccccCCCeE
Confidence             2889999998543     3232322 3357999999999999999999 99999999999     99999963 35789


Q ss_pred             EEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+. .+.......++|+.|+||
T Consensus       169 kL~DFGla~~~~~~~~~~~~~gt~~y~aP  197 (352)
T d1koba_         169 KIIDFGLATKLNPDEIVKVTTATAEFAAP  197 (352)
T ss_dssp             EECCCTTCEECCTTSCEEEECSSGGGCCH
T ss_pred             EEeecccceecCCCCceeeccCcccccCH
Confidence            9999999984 344456678899999998

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.5e-16  Score=154.86  Aligned_cols=151  Identities=24%  Similarity=0.294  Sum_probs=114.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcC-CCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNE-GNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~-~~~  406 (512)
                      |.|+++.++.+|.       .+|+|.+.+.......... .+|  +|+.++||||+++.+.|.          ..+ ...
T Consensus        32 g~V~~~~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~----------~~~~~~~   94 (346)
T d1cm8a_          32 GAVCSAVDGRTGA-------KVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFT----------PDETLDD   94 (346)
T ss_dssp             -CEEEEEETTTCC-------EEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEEC----------SCSSTTT
T ss_pred             eEEEEEEECCCCC-------EEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEec----------cCccccc
Confidence            7899999988888       8999998764433222222 455  789999999998877762          111 011


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..-++.+||+|..++..+++       ....+...++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|
T Consensus        95 ~~~~~lv~e~~~~~l~~~~~-------~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiK-----p~NIL~~~-~~~~k  161 (346)
T d1cm8a_          95 FTDFYLVMPFMGTDLGKLMK-------HEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLK-----PGNLAVNE-DCELK  161 (346)
T ss_dssp             CCCCEEEEECCSEEHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEE
T ss_pred             cceEEEEEecccccHHHHHH-------hccccHHHHHHHHHHHHHHHHHHHhCCCcccccC-----cchhhccc-ccccc
Confidence            12368899999665544432       2358999999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+... ...+.+++|++|+||
T Consensus       162 l~Dfg~a~~~~-~~~~~~~~t~~y~aP  187 (346)
T d1cm8a_         162 ILDFGLARQAD-SEMTGYVVTRWYRAP  187 (346)
T ss_dssp             ECCCTTCEECC-SSCCSSCSCGGGCCT
T ss_pred             cccccceeccC-CccccccccccccCH
Confidence            99999998543 335778999999998

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.7e-16  Score=154.95  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=111.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.+.+.      ....+|   +++..+||||++..+.|.           ....+.
T Consensus        26 g~Vy~a~~~~~~~-------~vAiK~i~~~------~~~~~E~~~~~~~~~hpnIv~l~~~~~-----------~~~~~~   81 (335)
T d2ozaa1          26 GKVLQIFNKRTQE-------KFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYE-----------NLYAGR   81 (335)
T ss_dssp             CEEEEEEETTTCC-------EEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEE-----------EEETTE
T ss_pred             eEEEEEEECCCCC-------EEEEEEECCc------HHHHHHHHHHHHhcCCCCCCeEEEEEe-----------ecccCC
Confidence            7788998888888       8999987532      122344   345678999998777661           100111


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC--CCe
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES--KLV  483 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~--~~~  483 (512)
                      ..++.+|++|.. ++..++.-.    .....++..++.++.|++.|+.| |..+|+|||||     |+||++...  .+.
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~----~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiK-----p~NIll~~~~~~~~  152 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDR----GDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK-----PENLLYTSKRPNAI  152 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSC----SCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEESCSSTTCC
T ss_pred             CEEEEEEECCCCCcHHHHHHhc----CCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccc-----cccccccccccccc
Confidence            238899999984 777776421    11246888999999999999999 99999999999     999999753  357


Q ss_pred             EEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+|+. .........+||++|+||
T Consensus       153 ~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  182 (335)
T d2ozaa1         153 LKLTDFGFAKETTSHNSLTTPCYTPYYVAP  182 (335)
T ss_dssp             EEECCCTTCEECCCCCCCCCCSCCCSSCCC
T ss_pred             ccccccceeeeccCCCccccccCCcccCCc
Confidence            99999999983 334456678999999999

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.9e-15  Score=148.78  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=108.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++.++.+|.       .+|+|.+....   .-..+ .+|  +|+.++||||++....|           ...    
T Consensus        31 g~Vy~a~~~~~~~-------~vAvK~i~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~-----------~~~----   85 (287)
T d1opja_          31 GEVYEGVWKKYSL-------TVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVC-----------TRE----   85 (287)
T ss_dssp             SSEEEEEEGGGTE-------EEEEEECCTTC---SCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----
T ss_pred             eEEEEEEECCCCe-------EEEEEEECCcc---chHHHHHHHHHHHHhCCCCCEecCCccE-----------eeC----
Confidence            6777777777776       89999876422   11222 455  78999999999876655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+|++|.. ++..++.-    ......+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|
T Consensus        86 ~~~~iv~E~~~~g~l~~~l~~----~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlK-----p~NILl~~-~~~~K  155 (287)
T d1opja_          86 PPFYIITEFMTYGNLLDYLRE----CNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA-----ARNCLVGE-NHLVK  155 (287)
T ss_dssp             SSCEEEEECCTTCBHHHHHHH----SCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEE
T ss_pred             CeeEEEeecccCcchHHHhhh----ccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccc-----cCeEEECC-CCcEE
Confidence            137899999985 55555421    112346888899999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCCC---CccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHEN---EITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~---~~t~yv~tr~YraP  512 (512)
                      ++|||+|+....+   ..+...+|..|+||
T Consensus       156 l~DFG~a~~~~~~~~~~~~~~~g~~~y~aP  185 (287)
T d1opja_         156 VADFGLSRLMTGDTYTAHAGAKFPIKWTAP  185 (287)
T ss_dssp             ECCCCCTTTCCSSSSEEETTEEECGGGCCH
T ss_pred             EccccceeecCCCCceeeccccccccccCh
Confidence            9999999854322   23445678889998

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.47  E-value=2.6e-15  Score=147.10  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=113.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCc-------hH-HHH--HHhhCC-CCCCCcCCchhhhhHHhhhhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVP-------SS-VAS--ILNDNA-CVNLTSKSEPFWILAKAVKDF  399 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~-------~~-~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F  399 (512)
                      +.|+++.++.+|.       .+|+|.+.+......-.       .. .+|  ++..++ ||||++..+.|          
T Consensus        17 g~V~~~~~~~~~~-------~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~----------   79 (277)
T d1phka_          17 SVVRRCIHKPTCK-------EYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY----------   79 (277)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE----------
T ss_pred             eEEEEEEECCCCC-------EEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeec----------
Confidence            6788998888887       88999886543211111       11 234  566665 99999887777          


Q ss_pred             hhcCCCCCcceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccc
Q psy17422        400 VDNEGNGNLPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHV  477 (512)
Q Consensus       400 ~~~~~~~~lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll  477 (512)
                       ..++    -++.+||+|. .++..+++      .+...+...++.++.|++.|+.| |.++|+|||||     |+||++
T Consensus        80 -~~~~----~~~ivmE~~~~g~L~~~l~------~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlk-----p~Nill  143 (277)
T d1phka_          80 -ETNT----FFFLVFDLMKKGELFDYLT------EKVTLSEKETRKIMRALLEVICALHKLNIVHRDLK-----PENILL  143 (277)
T ss_dssp             -ECSS----EEEEEEECCTTCBHHHHHH------HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEE
T ss_pred             -ccCc----ceEEEEEcCCCchHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccc-----cceEEE
Confidence             2222    2889999997 47777664      33458899999999999999999 99999999999     999999


Q ss_pred             cCCCCeEEEecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        478 NESKLVLKLCDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       478 ~~~~~~~Kl~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      .. ++.+|++|||+++. .+....+.++||..|+||
T Consensus       144 ~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~P  178 (277)
T d1phka_         144 DD-DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAP  178 (277)
T ss_dssp             CT-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCH
T ss_pred             cC-CCCeEEccchheeEccCCCceeeeeccCCCCCH
Confidence            75 48999999999974 334445678999999997

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-15  Score=145.94  Aligned_cols=135  Identities=16%  Similarity=0.120  Sum_probs=96.1

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.++.......-... .+|  +|..++||||++.....           . ++    .++.++++|. .++..++.
T Consensus        32 ~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~-----------~-~~----~~~lv~Ey~~~g~L~~~l~   95 (276)
T d1uwha_          32 DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-----------T-AP----QLAIVTQWCEGSSLYHHLH   95 (276)
T ss_dssp             EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEE-----------C-SS----SCEEEEECCCEEEHHHHHH
T ss_pred             EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEE-----------e-cc----EEEEEEecCCCCCHHHHHh
Confidence            5899887644322222222 244  78899999999654321           1 11    2788999998 56666653


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC----CCCcc
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH----ENEIT  501 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~----~~~~t  501 (512)
                           ..+...+...+..++.|++.|+.| |+++|+|||||     |+||++... +.+|++|||+|+...    ....+
T Consensus        96 -----~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlK-----p~NiLl~~~-~~~Kl~DFGla~~~~~~~~~~~~~  164 (276)
T d1uwha_          96 -----IIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK-----SNNIFLHED-LTVKIGDFGLATVKSRWSGSHQFE  164 (276)
T ss_dssp             -----TSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEEETT-SSEEECCCCCSCC-----------
T ss_pred             -----hccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccC-----HHHEEEcCC-CCEEEccccceeeccccCCccccc
Confidence                 223457888999999999999999 99999999999     999999754 889999999997422    22345


Q ss_pred             CeeeeeeeccC
Q psy17422        502 PYLVSRFYRAP  512 (512)
Q Consensus       502 ~yv~tr~YraP  512 (512)
                      ..+||..|+||
T Consensus       165 ~~~gt~~y~AP  175 (276)
T d1uwha_         165 QLSGSILWMAP  175 (276)
T ss_dssp             -CCCCGGGCCH
T ss_pred             ccccCcccCCH
Confidence            67899999998

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-15  Score=151.23  Aligned_cols=146  Identities=18%  Similarity=0.141  Sum_probs=111.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH--HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS--VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~--~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      |.|.++.++.+|.       .+|+|.+...    .....  .+|  +|+.++||||++..+.|           +.++. 
T Consensus        19 g~Vy~~~~~~~~~-------~~AiK~i~~~----~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----------~~~~~-   75 (321)
T d1tkia_          19 GIVHRCVETSSKK-------TYMAKFVKVK----GTDQVLVKKEISILNIARHRNILHLHESF-----------ESMEE-   75 (321)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECCC----THHHHHHHHHHHHHHHSCCTTBCCEEEEE-----------EETTE-
T ss_pred             eEEEEEEECCCCc-------EEEEEEEcCC----cccHHHHHHHHHHHHhCCCCCCCeEEEEE-----------EECCE-
Confidence            7889999998888       8999988642    11111  244  78999999999887766           22222 


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCC-CCe
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNES-KLV  483 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~-~~~  483 (512)
                         ++.+||+|.. ++..++.     +.+...++..++.++.|++.|+.| |..+|+|||||     |+||++... ...
T Consensus        76 ---~~lvmE~~~gg~L~~~i~-----~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlK-----p~NIll~~~~~~~  142 (321)
T d1tkia_          76 ---LVMIFEFISGLDIFERIN-----TSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIR-----PENIIYQTRRSST  142 (321)
T ss_dssp             ---EEEEECCCCCCBHHHHHT-----SSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEESSSSCCC
T ss_pred             ---EEEEEecCCCCcHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc-----ccceeecCCCceE
Confidence               8999999985 6555442     122357899999999999999999 99999999999     999999643 357


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|++|||+++.. ........++|+.|+||
T Consensus       143 ikl~DFG~~~~~~~~~~~~~~~~t~~y~ap  172 (321)
T d1tkia_         143 IKIIEFGQARQLKPGDNFRLLFTAPEYYAP  172 (321)
T ss_dssp             EEECCCTTCEECCTTCEEEEEESCGGGSCH
T ss_pred             EEEcccchhhccccCCcccccccccccccc
Confidence            999999999843 33345567889999987

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=2.8e-15  Score=146.35  Aligned_cols=153  Identities=14%  Similarity=0.044  Sum_probs=103.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++.+..+|.       .+|+|.+....... ..... .+|  +++.++||||++..+.|.           .+...
T Consensus        21 g~Vy~a~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~-----------~~~~~   82 (277)
T d1o6ya_          21 SEVHLARDLRLHR-------DVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGE-----------AETPA   82 (277)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----------EECSS
T ss_pred             eEEEEEEECCCCC-------EEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceee-----------eccCC
Confidence            6789999888888       89999886543211 11112 344  688899999998766652           11111


Q ss_pred             CcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        407 NLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       407 ~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      ..-++.+||+|...+     |..........+...+..++.|++.|+.+ |.++|+|||||     |+||++.. .+..+
T Consensus        83 ~~~~~lvmE~~~g~~-----L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiK-----P~NIll~~-~~~~~  151 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVT-----LRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK-----PANIMISA-TNAVK  151 (277)
T ss_dssp             SEEEEEEEECCCEEE-----HHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEET-TSCEE
T ss_pred             CceEEEEEECCCCCE-----ehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccc-----CcccccCc-cccce
Confidence            222678999998543     22223334458899999999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCC-----CCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWS-----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~-----~~~~~t~yv~tr~YraP  512 (512)
                      ++|||.++..     .......++||+.|+||
T Consensus       152 l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aP  183 (277)
T d1o6ya_         152 VMDFGIARAIADSGNSVTQTAAVIGTAQYLSP  183 (277)
T ss_dssp             ECCCTTCEECC----------------TTCCH
T ss_pred             eehhhhhhhhccccccccccccccCcccccCH
Confidence            9999987621     12245678999999998

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4e-15  Score=149.96  Aligned_cols=152  Identities=23%  Similarity=0.233  Sum_probs=110.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      |.|+++.++.+|.       .+|+|.+...........-.+|  +|+.++||||++....+..     ..|.     ...
T Consensus        22 g~Vy~~~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~-----~~~~-----~~~   84 (345)
T d1pmea_          22 GMVCSAYDNVNKV-------RVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRA-----PTIE-----QMK   84 (345)
T ss_dssp             CCEEEEEETTTCS-------EEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECC-----SSTT-----TCC
T ss_pred             eEEEEEEECCCCc-------EEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEee-----cccc-----ccc
Confidence            7899999999998       8999998643211111111344  7899999999987665510     0011     011


Q ss_pred             ceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        409 PLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       409 Pl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      -++.+++.+..++..++.-       ...+...++.++.|++.|+.| |.++|+|||||     |+||++.. .+.+|++
T Consensus        85 ~~~l~~~~~~g~L~~~l~~-------~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIK-----p~NILl~~-~~~~kl~  151 (345)
T d1pmea_          85 DVYLVTHLMGADLYKLLKT-------QHLSNDHICYFLYQILRGLKYIHSANVLHRDLK-----PSNLLLNT-TCDLKIC  151 (345)
T ss_dssp             CEEEEEECCCEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----GGGEEECT-TCCEEEC
T ss_pred             eEEEEEeecCCchhhhhhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----cceEEECC-CCCEEEc
Confidence            1455556566777777642       247899999999999999999 99999999999     99999975 4899999


Q ss_pred             cCCCCCCC-----CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS-----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~-----~~~~~t~yv~tr~YraP  512 (512)
                      |||+|+..     .......+++|+.|+||
T Consensus       152 DfG~a~~~~~~~~~~~~~~~~~gt~~y~aP  181 (345)
T d1pmea_         152 DFGLARVADPDHDHTGFLTEYVATRWYRAP  181 (345)
T ss_dssp             CCTTCEECCGGGCBCCTTCCCCSCGGGCCG
T ss_pred             ccCceeeccCCCccceeeccccccceechH
Confidence            99998721     12235678999999998

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.43  E-value=4e-15  Score=148.61  Aligned_cols=145  Identities=19%  Similarity=0.187  Sum_probs=109.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCC-CCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNA-CVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~-~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.+...    ....-.+|  +|..++ ||||++..+.|.          ..   ..
T Consensus        49 g~V~~a~~~~~~~-------~vAiK~i~~~----~~~~~~~Ei~il~~l~~hpnIv~~~~~~~----------~~---~~  104 (328)
T d3bqca1          49 SEVFEAINITNNE-------KVVVKILKPV----KKKKIKREIKILENLRGGPNIITLADIVK----------DP---VS  104 (328)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSS----CHHHHHHHHHHHHHHTTSTTBCCEEEEEE----------CT---TT
T ss_pred             eEEEEEEECCCCC-------EEEEEEECHH----HHHHHHHHHHHHHhccCCCCCcEEEEEEE----------ec---CC
Confidence            7888888888887       8999987532    11122345  677764 999998776651          11   11


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..++.+|++|....     |...+   ...+...++.++.|++.||.| |.++|+|||||     |+||++....+.+|+
T Consensus       105 ~~~~~v~e~~~~~~-----L~~~~---~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiK-----p~NILi~~~~~~vkl  171 (328)
T d3bqca1         105 RTPALVFEHVNNTD-----FKQLY---QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVK-----PHNVMIDHEHRKLRL  171 (328)
T ss_dssp             CSEEEEEECCCSCB-----GGGTT---TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEETTTTEEEE
T ss_pred             CceeEEEeecCCCc-----HHHHh---cCCCHHHHHHHHHHHHHHHHHHhhccccccccc-----ccceEEcCCCCeeee
Confidence            12778999998543     22222   237888999999999999999 99999999999     999999766568999


Q ss_pred             ecCCCCCC-CCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW-SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~-~~~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+. .+....+.+++|++|+||
T Consensus       172 ~DFG~a~~~~~~~~~~~~~~t~~y~aP  198 (328)
T d3bqca1         172 IDWGLAEFYHPGQEYNVRVASRYFKGP  198 (328)
T ss_dssp             CCGGGCEECCTTCCCCSCCSCGGGCCH
T ss_pred             cccccceeccCCCcccccccCccccCc
Confidence            99999983 344556788999999998

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.3e-15  Score=145.47  Aligned_cols=156  Identities=24%  Similarity=0.242  Sum_probs=110.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--H---HhhCCCCCCCcCCchhhhhHHhhhhhhhcCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--I---LNDNACVNLTSKSEPFWILAKAVKDFVDNEG  404 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--l---l~~~~~~ni~~~~~~fw~l~~alk~F~~~~~  404 (512)
                      |.|+++.+..++.      ..+|+|.+............ .+|  +   |+..+||||++..+.|.          ....
T Consensus        21 g~V~~a~~~~~~~------~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~----------~~~~   84 (305)
T d1blxa_          21 GKVFKARDLKNGG------RFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCT----------VSRT   84 (305)
T ss_dssp             EEEEEEEETTTTT------EEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEE----------EEEC
T ss_pred             eEEEEEEEECCCC------EEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeec----------cccc
Confidence            6677777654432      25899998765443333222 444  3   44458999998766651          1111


Q ss_pred             CCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCe
Q psy17422        405 NGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLV  483 (512)
Q Consensus       405 ~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~  483 (512)
                      .....++.++++|..+...+...    ......+...++.++.|++.||.| |.++|+|||||     |+||++.. .+.
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiK-----p~NILi~~-~~~  154 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDK----VPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK-----PQNILVTS-SGQ  154 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHH----SCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TCC
T ss_pred             ccCceEEEEEEeccCCchhhhhh----ccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCC-----ccEEEEcC-CCC
Confidence            11223778889998776444322    223357888999999999999999 99999999999     99999975 489


Q ss_pred             EEEecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        484 LKLCDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       484 ~Kl~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      .|++|||+++.. .......++||+.|+||
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~gT~~Y~AP  184 (305)
T d1blxa_         155 IKLADFGLARIYSFQMALTSVVVTLWYRAP  184 (305)
T ss_dssp             EEECSCCSCCCCCGGGGGCCCCCCCTTCCH
T ss_pred             eeecchhhhhhhcccccCCCcccChhhcCc
Confidence            999999998843 34456788999999998

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.1e-15  Score=147.13  Aligned_cols=151  Identities=13%  Similarity=0.111  Sum_probs=93.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|.    ....+|+|.+........ ... .+|  +|..++||||++..+.+.           ..    
T Consensus        40 g~Vy~~~~~~~~~----~~~~vavK~~~~~~~~~~-~~~~~~E~~~l~~l~HpnIv~l~g~~~-----------~~----   99 (299)
T d1jpaa_          40 GEVCSGHLKLPGK----REIFVAIKTLKSGYTEKQ-RRDFLSEASIMGQFDHPNVIHLEGVVT-----------KS----   99 (299)
T ss_dssp             SEEEEEEECC-------CCEEEEEEECCSSCCHHH-HHHHHHHHHHHTTCCCTTBCCEEEEEC-----------SS----
T ss_pred             eEEEEEEEeCCCC----EEEEEEEEEECcccCHHH-HHHHHHHHHHHHhCCCCCCccEEEEEe-----------eC----
Confidence            5666666655543    011366666543221111 111 344  688999999998766551           11    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -+++.+|++|.. ++..++.     +.....+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|
T Consensus       100 ~~~~iv~Ey~~~g~L~~~~~-----~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlK-----p~NILl~~-~~~~K  168 (299)
T d1jpaa_         100 TPVMIITEFMENGSLDSFLR-----QNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLA-----ARNILVNS-NLVCK  168 (299)
T ss_dssp             SSCEEEEECCTTEEHHHHHH-----TTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEE
T ss_pred             CEEEEEEEecCCCcceeeec-----cccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccc-----cceEEECC-CCcEE
Confidence            248899999985 4444432     223347888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCC-------CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE-------NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~-------~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+....       .....+.+|..|+||
T Consensus       169 l~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aP  202 (299)
T d1jpaa_         169 VSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAP  202 (299)
T ss_dssp             ECCC-----------------------CGGGSCH
T ss_pred             ECCcccceEccCCCCcceeeecccccCCccccCH
Confidence            999999983221       112345678889998

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.1e-15  Score=146.60  Aligned_cols=159  Identities=14%  Similarity=0.077  Sum_probs=105.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|.++.+..++..  .....+|+|.+...........-.+|  +|..+ +||||+++.+.|           ...+   
T Consensus        51 G~Vy~a~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~-----------~~~~---  114 (325)
T d1rjba_          51 GKVMNATAYGISKT--GVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC-----------TLSG---  114 (325)
T ss_dssp             EEEEEEEEESCSSS--SCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSSS---
T ss_pred             eEEEEEEEcCCCcc--cceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEE-----------eeCC---
Confidence            56666665544331  01124788877543332222222444  46555 899999877665           1221   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhh-----------------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhh
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLY-----------------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLF  468 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy-----------------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~F  468 (512)
                       .++.+|++|. +++..++.-+.-.                 ......+...+..++.|++.|+.| |.++|+|||||  
T Consensus       115 -~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlK--  191 (325)
T d1rjba_         115 -PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA--  191 (325)
T ss_dssp             -SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS--
T ss_pred             -eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc--
Confidence             3789999997 6888887532210                 111236788899999999999999 99999999999  


Q ss_pred             ccccccccccCCCCeEEEecCCCCCCCCC----CCccCeeeeeeeccC
Q psy17422        469 CRNASFIHVNESKLVLKLCDFGSASWSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       469 c~n~~nIll~~~~~~~Kl~DfGlar~~~~----~~~t~yv~tr~YraP  512 (512)
                         |+||++.. .+.+|++|||+|+....    ...+..++|..|+||
T Consensus       192 ---p~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aP  235 (325)
T d1rjba_         192 ---ARNVLVTH-GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  235 (325)
T ss_dssp             ---GGGEEEET-TTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             ---hhcccccc-CCeEEEeeccccccccCCCceeeeccccCCCccCCh
Confidence               99999975 48999999999984321    124567899999998

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.42  E-value=5.5e-15  Score=144.78  Aligned_cols=148  Identities=20%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++ +|.       .+|+|.+............ .+|  +|+.++||||++..+.|           ..++.  
T Consensus        16 g~Vy~~~~~-~~~-------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----------~~~~~--   74 (286)
T d1ob3a_          16 GVVYKAQNN-YGE-------TFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI-----------HTKKR--   74 (286)
T ss_dssp             EEEEEEEET-TSC-------EEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEE-----------ECSSC--
T ss_pred             cEEEEEEeC-CCC-------EEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeec-----------ccCCc--
Confidence            678888764 566       7999998654433333344 456  68999999999876665           12222  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                        ++.+++++..++...+     .+.+...+...++.++.|++.||.+ |..+|+|||||     |+||++.. ++.+|+
T Consensus        75 --~~i~~e~~~~~~~~~~-----~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiK-----p~NIll~~-~~~~kl  141 (286)
T d1ob3a_          75 --LVLVFEHLDQDLKKLL-----DVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK-----PQNLLINR-EGELKI  141 (286)
T ss_dssp             --EEEEEECCSEEHHHHH-----HTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TSCEEE
T ss_pred             --eeEEEEeehhhhHHHH-----HhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCC-----CceeeEcC-CCCEEe
Confidence              7778888876543333     3344568999999999999999999 99999999999     99999976 489999


Q ss_pred             ecCCCCCC--CCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASW--SHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~--~~~~~~t~yv~tr~YraP  512 (512)
                      +|||++..  .+......+++|+.|+||
T Consensus       142 ~DfG~a~~~~~~~~~~~~~~~~~~y~~p  169 (286)
T d1ob3a_         142 ADFGLARAFGIPVRKYTHEIVTLWYRAP  169 (286)
T ss_dssp             CCTTHHHHHCC---------CCCTTCCH
T ss_pred             cccccceecccCccccceecccchhhhH
Confidence            99999863  223334566889999987

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4e-15  Score=145.66  Aligned_cols=135  Identities=12%  Similarity=0.066  Sum_probs=95.3

Q ss_pred             hHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      ..+|+|.+............ .+|  +|+.++||||++....+           +.  .   +.+.+||+|.. ++..|+
T Consensus        35 ~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~-----------~~--~---~~~lvmE~~~~g~L~~~l   98 (277)
T d1xbba_          35 KTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-----------EA--E---SWMLVMEMAELGPLNKYL   98 (277)
T ss_dssp             EEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------ES--S---SEEEEEECCTTEEHHHHH
T ss_pred             eEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEe-----------cc--C---CEEEEEEcCCCCcHHHHH
Confidence            37899987654322222222 344  78899999999766544           21  1   26789999985 555554


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC--C---CC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH--E---NE  499 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~--~---~~  499 (512)
                            +.....+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|++|||+|+...  .   ..
T Consensus        99 ------~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlK-----p~Nill~~-~~~~kl~DFGla~~~~~~~~~~~~  166 (277)
T d1xbba_          99 ------QQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLA-----ARNVLLVT-QHYAKISDFGLSKALRADENYYKA  166 (277)
T ss_dssp             ------HHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEEEE-TTEEEECCCTTCEECCTTCSEEEC
T ss_pred             ------hhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCc-----chhhcccc-cCcccccchhhhhhcccccccccc
Confidence                  334457888999999999999999 99999999999     99999975 4899999999997321  1   12


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....+|..|+||
T Consensus       167 ~~~~~gt~~y~AP  179 (277)
T d1xbba_         167 QTHGKWPVKWYAP  179 (277)
T ss_dssp             ----CCCGGGCCH
T ss_pred             ccccCCCceecCc
Confidence            3345788899998

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.6e-15  Score=144.36  Aligned_cols=153  Identities=13%  Similarity=0.090  Sum_probs=98.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++..+.++.   ..+..+|+|.+.....+.. ... .+|  +|..++||||++....++          +     .
T Consensus        21 G~Vy~~~~~~~~~---~~~~~vAvK~~~~~~~~~~-~~~~~~E~~il~~l~H~nIv~~~g~~~----------~-----~   81 (283)
T d1mqba_          21 GEVYKGMLKTSSG---KKEVPVAIKTLKAGYTEKQ-RVDFLGEAGIMGQFSHHNIIRLEGVIS----------K-----Y   81 (283)
T ss_dssp             SEEEEEEEEC------CCEEEEEEEEECTTCCHHH-HHHHHHHHHHHHTCCCTTBCCEEEEEC----------S-----S
T ss_pred             eEEEEEEEeCCCC---EEEEEEEEEEECcccChHH-HHHHHHHHHHHHhcCCCCEeeeeEEEe----------c-----C
Confidence            5666666555442   1123578888754322111 112 344  789999999998766551          1     1


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -+++.++++|...+....    ........+...+..++.|++.|+.| |.++|+|||||     |+||++.. ++.+|+
T Consensus        82 ~~~~~v~e~~~~~~l~~~----~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlK-----p~NILl~~-~~~~Kl  151 (283)
T d1mqba_          82 KPMMIITEYMENGALDKF----LREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLA-----ARNILVNS-NLVCKV  151 (283)
T ss_dssp             SSEEEEEECCTTEEHHHH----HHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEEE
T ss_pred             CceEEEEEecccCcchhh----hhcccccccHHHHHHHHHHHHHhhhhccccccccCccc-----cceEEECC-CCeEEE
Confidence            247889999986542211    11223457888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCCCC-----CccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHEN-----EITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~-----~~t~yv~tr~YraP  512 (512)
                      +|||+++.....     ..+...+|..|+||
T Consensus       152 ~DFGla~~~~~~~~~~~~~~~~~gt~~Y~AP  182 (283)
T d1mqba_         152 SDFGLSRVLEDDPEATYTTSGGKIPIRWTAP  182 (283)
T ss_dssp             CCCCC-----------------CCCGGGSCH
T ss_pred             cccchhhcccCCCccceEeccCCCCccccCH
Confidence            999999842211     12345678899998

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.7e-15  Score=141.95  Aligned_cols=133  Identities=13%  Similarity=0.147  Sum_probs=90.4

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv~  426 (512)
                      .+|+|.++...   .-..+ .+|  ++..++||||++....+           ..+    -+++.++++|.. ++..|+.
T Consensus        31 ~vAvK~i~~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~-----------~~~----~~~~lv~E~~~~g~L~~~l~   92 (263)
T d1sm2a_          31 KVAIKTIREGA---MSEEDFIEEAEVMMKLSHPKLVQLYGVC-----------LEQ----APICLVFEFMEHGCLSDYLR   92 (263)
T ss_dssp             EEEEEECCSSS---SCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----SSCEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEECCCc---CcHHHHHHHHHHHHhcCCCCccccccee-----------ccC----CceEEEEEecCCCcHHHHhh
Confidence            68999876421   11222 455  68899999999876655           111    248899999984 5555543


Q ss_pred             hHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC---CCccC
Q psy17422        427 LQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE---NEITP  502 (512)
Q Consensus       427 L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~---~~~t~  502 (512)
                           ..+...+...+..++.|++.|+.| |.++|+|||||     |+||++.. ++.+|++|||+++....   .....
T Consensus        93 -----~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlK-----p~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~  161 (263)
T d1sm2a_          93 -----TQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA-----ARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTG  161 (263)
T ss_dssp             -----TTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCS-----GGGEEECG-GGCEEECSCC---------------
T ss_pred             -----ccccCCCHHHHHHHHHHHHHHHHhhhccceeecccc-----hhheeecC-CCCeEecccchheeccCCCceeecc
Confidence                 222346778888999999999999 99999999999     99999975 48999999999984321   22335


Q ss_pred             eeeeeeeccC
Q psy17422        503 YLVSRFYRAP  512 (512)
Q Consensus       503 yv~tr~YraP  512 (512)
                      ..+|..|+||
T Consensus       162 ~~gt~~y~aP  171 (263)
T d1sm2a_         162 TKFPVKWASP  171 (263)
T ss_dssp             ---CTTSCCH
T ss_pred             eecCcccCCh
Confidence            6889999998

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.2e-15  Score=144.93  Aligned_cols=150  Identities=10%  Similarity=0.030  Sum_probs=103.7

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      |.|+++..+.++.     +..+|+|.+...........-.+|  +|..++||||++....+           ..+     
T Consensus        23 g~Vy~~~~~~~~~-----~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~-----------~~~-----   81 (285)
T d1u59a_          23 GSVRQGVYRMRKK-----QIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-----------QAE-----   81 (285)
T ss_dssp             EEEEEEEEC---C-----CEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------ESS-----
T ss_pred             eEEEEEEEecCCC-----cEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeee-----------ccC-----
Confidence            5566665443332     236899987643221111111344  78899999999765544           211     


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      +++.+||+|.. ++..|+.     ..+...+...+..++.|++.|+.| |+++|+|||||     |+||++.. .+.+|+
T Consensus        82 ~~~lvmE~~~~g~L~~~l~-----~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlK-----p~Nill~~-~~~~Kl  150 (285)
T d1u59a_          82 ALMLVMEMAGGGPLHKFLV-----GKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLA-----ARNVLLVN-RHYAKI  150 (285)
T ss_dssp             SEEEEEECCTTEEHHHHHT-----TCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEEEE-TTEEEE
T ss_pred             eEEEEEEeCCCCcHHHHhh-----ccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCc-----hhheeecc-CCceee
Confidence            37899999985 5555532     223457888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCC-----CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH-----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~-----~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+...     ....+...+|..|+||
T Consensus       151 ~DFGla~~~~~~~~~~~~~~~~~gt~~y~aP  181 (285)
T d1u59a_         151 SDFGLSKALGADDSYYTARSAGKWPLKWYAP  181 (285)
T ss_dssp             CCCTTCEECTTCSCEECCCCSSCCCGGGCCH
T ss_pred             ccchhhhcccccccccccccccccCccccCh
Confidence            9999997321     1123455788889998

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.6e-14  Score=145.97  Aligned_cols=152  Identities=22%  Similarity=0.227  Sum_probs=106.1

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.+.+...+...... .+|  +|+.++||||++..+.|+.     ....+    ..
T Consensus        31 g~V~~~~d~~t~~-------~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~-----~~~~~----~~   94 (355)
T d2b1pa1          31 GIVCAAYDAVLDR-------NVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTP-----QKTLE----EF   94 (355)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS-----CCSTT----TC
T ss_pred             eEEEEEEECCCCC-------EEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEec-----ccccc----cC
Confidence            7899999998888       8999998765432222222 344  6889999999988777721     00000    11


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .-++.++|+|.+++...+      .  ...+...++.++.|++.|+.+ |..+|+|||||     |+||++.. .+..|+
T Consensus        95 ~~~~iv~Ey~~~~l~~~~------~--~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlK-----P~Nil~~~-~~~~kl  160 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQVI------Q--MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-----PSNIVVKS-DCTLKI  160 (355)
T ss_dssp             CEEEEEEECCSEEHHHHH------T--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEECT-TCCEEE
T ss_pred             ceeEEEEeccchHHHHhh------h--cCCCHHHHHHHHHHHHHHHHHhhhcccccccCC-----cccccccc-ccceee
Confidence            237899999988764433      1  237889999999999999999 99999999999     99999975 478999


Q ss_pred             ecCCCCCCC-CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS-HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~-~~~~~t~yv~tr~YraP  512 (512)
                      +|||+++.. .....+.+++|+.|+||
T Consensus       161 ~df~~~~~~~~~~~~~~~~~t~~y~aP  187 (355)
T d2b1pa1         161 LDFGLARTAGTSFMMTPYVVTRYYRAP  187 (355)
T ss_dssp             CCCCC---------------CCTTCCH
T ss_pred             echhhhhccccccccccccccccccCh
Confidence            999998743 34456788999999998

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-14  Score=142.68  Aligned_cols=160  Identities=14%  Similarity=0.041  Sum_probs=97.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH---HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS---ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e---ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++....++..  .+...+|+|.+.............++   +.+..+|+||+.....++          +.    .
T Consensus        27 G~Vy~a~~~~~~~~--~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~----------~~----~   90 (299)
T d1ywna1          27 GQVIEADAFGIDKT--ATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT----------KP----G   90 (299)
T ss_dssp             CEEEEEEEESTTSS--SCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----------ST----T
T ss_pred             eEEEEEEEcCCCcc--cCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeec----------cC----C
Confidence            55555554433321  11236888887643221111111222   344457889886544331          11    1


Q ss_pred             cceeEEecccc-CChHHHHHhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                      ..++.+|++|. +++..|+......          ..+...+...+..++.|++.|+.| |.++|+|||||     |+||
T Consensus        91 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlK-----p~NI  165 (299)
T d1ywna1          91 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA-----ARNI  165 (299)
T ss_dssp             SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGE
T ss_pred             CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCC-----ccce
Confidence            23788999998 6888887643321          012346788999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      ++.. .+.+|++|||+|+...    ....+..+||..|+||
T Consensus       166 Ll~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP  205 (299)
T d1ywna1         166 LLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  205 (299)
T ss_dssp             EECG-GGCEEECC------CCSCTTSCCTTSCCCGGGGCCH
T ss_pred             eECC-CCcEEEccCcchhhccccccccccCceeeCccccch
Confidence            9975 4899999999997321    1234567899999998

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.9e-14  Score=143.35  Aligned_cols=151  Identities=13%  Similarity=0.076  Sum_probs=98.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|..+   ...+|+|.+....... .... .+|  ++..++||||+++.+.+.          +  +   
T Consensus        23 G~Vy~~~~~~~~~~~---~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~HpnIv~l~g~~~----------~--~---   83 (317)
T d1xkka_          23 GTVYKGLWIPEGEKV---KIPVAIKELREATSPK-ANKEILDEAYVMASVDNPHVCRLLGICL----------T--S---   83 (317)
T ss_dssp             EEEEEEEECC----C---CEEEEEEEECC----C-THHHHHHHHHHHHHCCCTTBCCEEEEEE----------S--S---
T ss_pred             eEEEEEEEcCCCCEE---EEEEEEEEeccccCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEe----------c--C---
Confidence            667777777666521   1136777665432222 2223 445  788999999998766551          1  1   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       ....++++|. .++..++.     ..+...+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|
T Consensus        84 -~~~~v~e~~~~~~l~~~~~-----~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlK-----p~NIll~~-~~~~k  151 (317)
T d1xkka_          84 -TVQLITQLMPFGCLLDYVR-----EHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA-----ARNVLVKT-PQHVK  151 (317)
T ss_dssp             -SEEEEEECCTTCBHHHHHH-----HTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----GGGEEEEE-TTEEE
T ss_pred             -CeeEEEEeccCCccccccc-----ccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcch-----hhcceeCC-CCCeE
Confidence             1556677776 45544432     334568888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+...    .......++|.+|+||
T Consensus       152 l~DFGla~~~~~~~~~~~~~~~~gt~~y~AP  182 (317)
T d1xkka_         152 ITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL  182 (317)
T ss_dssp             ECCCSHHHHTTTTCC--------CCTTTSCH
T ss_pred             eeccccceecccccccccccccccCccccCh
Confidence            99999987321    1123445789999998

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-14  Score=141.35  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++..+ .+       ..+|+|.+....   .-... .+|  +|..++||||++....+           . + .  
T Consensus        27 g~Vy~~~~~-~~-------~~vAvK~~~~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~-----------~-~-~--   80 (272)
T d1qpca_          27 GEVWMGYYN-GH-------TKVAVKSLKQGS---MSPDAFLAEANLMKQLQHQRLVRLYAVV-----------T-Q-E--   80 (272)
T ss_dssp             EEEEEEEET-TT-------EEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEE-----------C-S-S--
T ss_pred             cEEEEEEEC-CC-------CEEEEEEEccCc---CCHHHHHHHHHHHHhCCCCCEeEEEeee-----------c-c-C--
Confidence            556666543 22       268999875421   11222 455  78999999999765432           1 1 1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       +++.+|++|.. ++..++....    ....+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|
T Consensus        81 -~~~iv~Ey~~~g~L~~~~~~~~----~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiK-----p~NIll~~-~~~~K  149 (272)
T d1qpca_          81 -PIYIITEYMENGSLVDFLKTPS----GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR-----AANILVSD-TLSCK  149 (272)
T ss_dssp             -SCEEEEECCTTCBHHHHTTSHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGEEECT-TSCEE
T ss_pred             -CeEEEEEeCCCCcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccc-----hhheeeec-cccee
Confidence             37899999985 4444443221    2247888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCC---CCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHE---NEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~---~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+....   ...+...+|..|+||
T Consensus       150 l~DFGla~~~~~~~~~~~~~~~gt~~y~AP  179 (272)
T d1qpca_         150 IADFGLARLIEDNEYTAREGAKFPIKWTAP  179 (272)
T ss_dssp             ECCCTTCEECSSSCEECCTTCCCCTTTSCH
T ss_pred             eccccceEEccCCccccccccCCcccccCh
Confidence            999999984322   223456788999998

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.4e-14  Score=138.85  Aligned_cols=149  Identities=22%  Similarity=0.247  Sum_probs=110.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.++........... .+|  +|+.++||||+.....|          . .    .
T Consensus        16 g~V~~~~~~~~~~-------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~----------~-~----~   73 (292)
T d1unla_          16 GTVFKAKNRETHE-------IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVL----------H-S----D   73 (292)
T ss_dssp             SEEEEEEETTTCC-------EEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEE----------E-C----S
T ss_pred             eEEEEEEECCCCc-------EEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccc----------c-c----c
Confidence            6889999988888       8999998654433333333 455  68999999999776555          1 1    1


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      ..+..+++.+...+..+     ..+.....+...++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|+
T Consensus        74 ~~~~iv~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiK-----P~NIli~~-~~~~kl  142 (292)
T d1unla_          74 KKLTLVFEFCDQDLKKY-----FDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK-----PQNLLINR-NGELKL  142 (292)
T ss_dssp             SEEEEEEECCSEEHHHH-----HHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----GGGEEECT-TCCEEE
T ss_pred             cceeEEeeecccccccc-----ccccccccchhHHHHHHHHHHHHHHHhhcCCEeeeccc-----Cccccccc-CCceee
Confidence            23677788887654322     22334467888999999999999999 99999999999     99999975 478999


Q ss_pred             ecCCCCCCC--CCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWS--HENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~--~~~~~t~yv~tr~YraP  512 (512)
                      +|||.|+..  +.......+++++|+||
T Consensus       143 ~DFG~a~~~~~~~~~~~~~~~~~~~~~p  170 (292)
T d1unla_         143 ANFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_dssp             CCCTTCEECCSCCSCCCSCCSCGGGCCH
T ss_pred             eecchhhcccCCCccceeeccccchhhh
Confidence            999999732  23344556777788776

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-14  Score=139.08  Aligned_cols=151  Identities=14%  Similarity=0.080  Sum_probs=92.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      |.|+++.+..++.    +...+|+|.+...........-.+|  +|+.++||||+++.+.|           . ++    
T Consensus        21 g~Vy~a~~~~~~~----~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~-----------~-~~----   80 (273)
T d1mp8a_          21 GDVHQGIYMSPEN----PALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-----------T-EN----   80 (273)
T ss_dssp             SEEEEEEECCC------CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------C-SS----
T ss_pred             cEEEEEEEecCCc----eeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----------e-cC----
Confidence            4566665543322    0114677776543211111111344  68889999999876654           1 11    


Q ss_pred             ceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      +++.+|++|.. ++..++.     ..+...+...+..++.|++.|+.| |.++|+|||||     |+||++.. .+.+|+
T Consensus        81 ~~~iv~E~~~~g~l~~~~~-----~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlK-----p~NIll~~-~~~~Kl  149 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQ-----VRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIA-----ARNVLVSS-NDCVKL  149 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHH-----HTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEEE-TTEEEE
T ss_pred             eEEEEEEeccCCcHHhhhh-----ccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccc-----hhheeecC-CCcEEE
Confidence            37899999985 4433332     223357888999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      +|||+|+...   ....+..++|.+|+||
T Consensus       150 ~DfG~a~~~~~~~~~~~~~~~gt~~y~ap  178 (273)
T d1mp8a_         150 GDFGLSRYMEDSTYYKASKGKLPIKWMAP  178 (273)
T ss_dssp             CC-------------------CCGGGCCH
T ss_pred             ccchhheeccCCcceeccceecCcccchh
Confidence            9999998432   1223456788999998

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-13  Score=133.66  Aligned_cols=145  Identities=12%  Similarity=0.098  Sum_probs=105.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++..+ ++.       .+|+|.+++.   .....+ .+|  ++..++||||++....|           ..+    
T Consensus        18 g~Vy~~~~~-~~~-------~vAvK~l~~~---~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~-----------~~~----   71 (258)
T d1k2pa_          18 GVVKYGKWR-GQY-------DVAIKMIKEG---SMSEDEFIEEAKVMMNLSHEKLVQLYGVC-----------TKQ----   71 (258)
T ss_dssp             EEEEEEEET-TTE-------EEEEEEEESS---SSCHHHHHHHHHHHHTCCCTTBCCEEEEE-----------CCS----
T ss_pred             eEEEEEEEC-CCC-------EEEEEEECcC---cCCHHHHHHHHHHHHhcCCCceeeEEEEE-----------eeC----
Confidence            556666653 333       7899987642   112233 455  68899999999876655           111    


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -+++.++++|.. ++..++     +..+...+...+..++.|+++|+.| |..+|+|+|||     |+||++.. .+.+|
T Consensus        72 ~~~~iv~Ey~~~g~l~~~~-----~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk-----~~Nill~~-~~~~k  140 (258)
T d1k2pa_          72 RPIFIITEYMANGCLLNYL-----REMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA-----ARNCLVND-QGVVK  140 (258)
T ss_dssp             SSEEEEEECCTTEEHHHHH-----HSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCS-----GGGEEECT-TCCEE
T ss_pred             CceEEEEEccCCCcHHHhh-----hccccCCcHHHHHHHHHHHHHHHHHHhhcCccccccc-----ceeEEEcC-CCcEE
Confidence            248999999974 444443     2334457788899999999999999 99999999999     99999975 48899


Q ss_pred             EecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++...   ....+...+|..|+||
T Consensus       141 l~DfG~a~~~~~~~~~~~~~~~~t~~y~aP  170 (258)
T d1k2pa_         141 VSDFGLSRYVLDDEYTSSVGSKFPVRWSPP  170 (258)
T ss_dssp             ECCCSSCCBCSSSSCCCCCCSCCCGGGCCH
T ss_pred             ECcchhheeccCCCceeecccCCCCCcCCc
Confidence            99999998432   2223456789999998

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.9e-14  Score=136.54  Aligned_cols=145  Identities=15%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      +.|+++..+.+ .       .+|+|.+.....   -... .+|  +++.++||||++..+.+          .+   .  
T Consensus        31 g~Vy~~~~~~~-~-------~vAiK~l~~~~~---~~~~~~~E~~~l~~l~h~nIv~~~g~~----------~~---~--   84 (285)
T d1fmka3          31 GEVWMGTWNGT-T-------RVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV----------SE---E--   84 (285)
T ss_dssp             CEEEEEEETTT-E-------EEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEE----------CS---S--
T ss_pred             eEEEEEEECCC-C-------EEEEEEECcccC---CHHHHHHHHHHHHhcccCCEeEEEEEE----------ec---C--
Confidence            45666654432 2       689998864322   1223 455  68999999999765543          11   1  


Q ss_pred             cceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                       +++.+|++|.. ++..++..+    .+...+...+..++.|++.|+.+ |.++|+|||||     |+||+++. ++.+|
T Consensus        85 -~~~lv~Ey~~~g~l~~~~~~~----~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlK-----p~NIll~~-~~~~k  153 (285)
T d1fmka3          85 -PIYIVTEYMSKGSLLDFLKGE----TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR-----AANILVGE-NLVCK  153 (285)
T ss_dssp             -SCEEEECCCTTCBHHHHHSHH----HHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEE
T ss_pred             -CeEEEEEecCCCchhhhhhhc----ccccchHHHHHHHHHHHHHHHHHHhhhheeccccc-----ceEEEECC-CCcEE
Confidence             27889999985 444454332    12347888999999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCC---CCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSH---ENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~---~~~~t~yv~tr~YraP  512 (512)
                      ++|||+|+...   ....+...+|..|+||
T Consensus       154 l~DfGla~~~~~~~~~~~~~~~gt~~y~aP  183 (285)
T d1fmka3         154 VADFGLARLIEDNEYTARQGAKFPIKWTAP  183 (285)
T ss_dssp             ECCCCTTC--------------CCGGGSCH
T ss_pred             EcccchhhhccCCCceeeccccccccccCh
Confidence            99999998432   2233456789999998

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.3e-14  Score=139.84  Aligned_cols=152  Identities=24%  Similarity=0.251  Sum_probs=104.6

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.+..+|.       .+|+|.+.+.......... .+|  +|+.++|+|+++....|...     ...+.  .  
T Consensus        32 g~Vy~a~~~~~~~-------~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~-----~~~~~--~--   95 (348)
T d2gfsa1          32 GSVCAAFDTKTGL-------RVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA-----RSLEE--F--   95 (348)
T ss_dssp             SSEEEEEETTTTE-------EEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSC-----SSTTT--C--
T ss_pred             eEEEEEEECCCCC-------EEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeec-----ccccc--C--
Confidence            7888998888888       8999998754332211122 355  78999999999877766200     00011  1  


Q ss_pred             cceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        408 LPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       408 lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      -....+++.+.+++..++.      . ...+...++.++.|++.||.| |.++|+|||||     |+||++.. .+.+|+
T Consensus        96 ~~~~i~~~~~gg~L~~~~~------~-~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiK-----p~NILi~~-~~~~kl  162 (348)
T d2gfsa1          96 NDVYLVTHLMGADLNNIVK------C-QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLK-----PSNLAVNE-DCELKI  162 (348)
T ss_dssp             CCCEEEEECCSEEHHHHHT------T-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TCCEEE
T ss_pred             ceEEEEEeecCCchhhhcc------c-ccccHHHHHHHHHHHHHHHHHHHhCCCcccccC-----Cccccccc-cccccc
Confidence            1133434434456655542      2 248899999999999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      +|||++..... .....+||++|+||
T Consensus       163 ~dfg~a~~~~~-~~~~~~g~~~y~ap  187 (348)
T d2gfsa1         163 LDFGLARHTDD-EMTGYVATRWYRAP  187 (348)
T ss_dssp             CCC----CCTG-GGSSSCHHHHTSCH
T ss_pred             cccchhcccCc-ccccccccccccCc
Confidence            99999875432 24567899999987

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-13  Score=135.27  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=109.2

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HH-hhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--IL-NDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll-~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++....++.........+|+|.+.............+|  ++ +..+||||++....|           ..+    
T Consensus        27 g~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~-----------~~~----   91 (299)
T d1fgka_          27 GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC-----------TQD----   91 (299)
T ss_dssp             -CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----
T ss_pred             cEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccc-----------ccC----
Confidence            677777766666544444456899887653321111122233  34 434899999877666           111    


Q ss_pred             cceeEEecccc-CChHHHHHhHHh----------hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQL----------YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~i----------y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                      -.++.++++|. +++..++.....          .......+...+..++.|++.|+.| |..+|+|||||     |+||
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiK-----p~Ni  166 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLA-----ARNV  166 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGE
T ss_pred             CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeec-----ccce
Confidence            13788999998 577777753321          1122347889999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCC----CCCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSH----ENEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~----~~~~t~yv~tr~YraP  512 (512)
                      ++.. ++..|++|||+++...    .......++|..|+||
T Consensus       167 Ll~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  206 (299)
T d1fgka_         167 LVTE-DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  206 (299)
T ss_dssp             EECT-TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCH
T ss_pred             eecC-CCCeEeccchhhccccccccccccccCCCChhhhhh
Confidence            9975 4899999999988322    2234567889999987

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.29  E-value=1.7e-13  Score=134.77  Aligned_cols=149  Identities=9%  Similarity=-0.026  Sum_probs=103.9

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCC-CCCCcCCchhhhhHHhhhhhhhcCCCCCcc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNAC-VNLTSKSEPFWILAKAVKDFVDNEGNGNLP  409 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~-~ni~~~~~~fw~l~~alk~F~~~~~~~~lP  409 (512)
                      |.|+++.+..+|.       .+|+|.+........+-.+++ ++..+.| +|++.....+           ...+    .
T Consensus        19 G~Vy~a~~~~~~~-------~vAvK~~~~~~~~~~~~~e~~-~~~~l~~~~~i~~~~~~~-----------~~~~----~   75 (293)
T d1csna_          19 GVIFEGTNLLNNQ-------QVAIKFEPRRSDAPQLRDEYR-TYKLLAGCTGIPNVYYFG-----------QEGL----H   75 (293)
T ss_dssp             CEEEEEEETTTTE-------EEEEEEEECCTTSCCHHHHHH-HHHHTTTCTTCCCEEEEE-----------EETT----E
T ss_pred             eEEEEEEECCCCC-------EEEEEEEccccCcHHHHHHHH-HHHHhcCCCCCCEEEEEe-----------ecCC----c
Confidence            6778888777776       899997654333233333333 3555554 6776544333           1111    2


Q ss_pred             eeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC----CCCeE
Q psy17422        410 LRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE----SKLVL  484 (512)
Q Consensus       410 l~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~----~~~~~  484 (512)
                      .+.+|+++..++..++...     ....+...+..++.|++.++.+ |..+|+|||||     |+||++..    ..+.+
T Consensus        76 ~~~vme~~~~~l~~~~~~~-----~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiK-----p~Nili~~~~~~~~~~v  145 (293)
T d1csna_          76 NVLVIDLLGPSLEDLLDLC-----GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIK-----PDNFLIGRPNSKNANMI  145 (293)
T ss_dssp             EEEEEECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----GGGEEECCSSSTTTTCE
T ss_pred             cEEEEEecCCCHHHHHHhh-----ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCC-----ccceeecCcccccCCce
Confidence            6788999987776665432     2247888899999999999999 99999999999     99999964    24679


Q ss_pred             EEecCCCCCCC---------CCCCccCeeeeeeeccC
Q psy17422        485 KLCDFGSASWS---------HENEITPYLVSRFYRAP  512 (512)
Q Consensus       485 Kl~DfGlar~~---------~~~~~t~yv~tr~YraP  512 (512)
                      |++|||+|+..         +.......+||+.|+||
T Consensus       146 kl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aP  182 (293)
T d1csna_         146 YVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSI  182 (293)
T ss_dssp             EECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCH
T ss_pred             EEcccceeEEcccCccccceeecccCceEEchhhcCH
Confidence            99999998721         11224467899999998

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-13  Score=137.47  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=107.0

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|+++.++.+|..     ..+|+|.+...........-.+|  +|..+ +||||++....+           ..++   
T Consensus        24 g~Vy~~~~~~~~~~-----~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~-----------~~~~---   84 (309)
T d1fvra_          24 GQVLKARIKKDGLR-----MDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC-----------EHRG---   84 (309)
T ss_dssp             CEEEEEEEEETTEE-----EEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEE-----------EETT---
T ss_pred             cEEEEEEECCCCeE-----EEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEE-----------ecCC---
Confidence            66777777776652     25788887644333333222455  67777 799999876655           1111   


Q ss_pred             cceeEEecccc-CChHHHHHhHHhh----------hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccc
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLY----------RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFI  475 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy----------~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nI  475 (512)
                       .++.+++++. +++.+++......          ......+...+..++.|++.|+.| |..+|+|||||     |+||
T Consensus        85 -~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlk-----p~NI  158 (309)
T d1fvra_          85 -YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA-----ARNI  158 (309)
T ss_dssp             -EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----GGGE
T ss_pred             -eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccc-----cceE
Confidence             2889999998 6777777533211          123457888999999999999999 99999999999     9999


Q ss_pred             cccCCCCeEEEecCCCCCCCCC-CCccCeeeeeeeccC
Q psy17422        476 HVNESKLVLKLCDFGSASWSHE-NEITPYLVSRFYRAP  512 (512)
Q Consensus       476 ll~~~~~~~Kl~DfGlar~~~~-~~~t~yv~tr~YraP  512 (512)
                      ++.. ++.+|++|||+|+.... .......+|..|+||
T Consensus       159 L~~~-~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aP  195 (309)
T d1fvra_         159 LVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAI  195 (309)
T ss_dssp             EECG-GGCEEECCTTCEESSCEECCC----CCTTTCCH
T ss_pred             EEcC-CCceEEccccccccccccccccceecCCcccch
Confidence            9875 48999999999874322 222345788889987

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.3e-13  Score=131.49  Aligned_cols=135  Identities=14%  Similarity=0.081  Sum_probs=90.6

Q ss_pred             HhHHHHhhhhcCCC-CCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEeccccC-ChHHHH
Q psy17422        351 EEAMKAVNFALIPT-TVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTA-DTTRYI  425 (512)
Q Consensus       351 ~eAik~v~~~~~~~-~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~~-d~~~yv  425 (512)
                      .+|+|.+.+..... ..-.+ .+|  +|+.++||||++....|.           +  .   .++.++++|.. ++..++
T Consensus        38 ~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~-----------~--~---~~~lv~e~~~~~~l~~~~  101 (273)
T d1u46a_          38 SVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-----------T--P---PMKMVTELAPLGSLLDRL  101 (273)
T ss_dssp             EEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----------S--S---SCEEEEECCTTCBHHHHH
T ss_pred             EEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----------e--c---chheeeeeecCcchhhhh
Confidence            57888876543222 11122 344  689999999997766551           1  1   26789999974 544443


Q ss_pred             HhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCCC-----CC
Q psy17422        426 ALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHE-----NE  499 (512)
Q Consensus       426 ~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~~-----~~  499 (512)
                      ..+     ....+...+..++.|++.|+.| |.++|+|||||     |+||++... +.+|++|||+++....     ..
T Consensus       102 ~~~-----~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDik-----p~NIll~~~-~~vkl~DfGl~~~~~~~~~~~~~  170 (273)
T d1u46a_         102 RKH-----QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA-----ARNLLLATR-DLVKIGDFGLMRALPQNDDHYVM  170 (273)
T ss_dssp             HHH-----GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEEEET-TEEEECCCTTCEECCC-CCEEEC
T ss_pred             hcc-----cCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeec-----HHHhccccc-cceeeccchhhhhcccCCCccee
Confidence            322     2347888999999999999999 99999999999     999999864 8999999999883211     12


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....++.+|+||
T Consensus       171 ~~~~~~~~~~~aP  183 (273)
T d1u46a_         171 QEHRKVPFAWCAP  183 (273)
T ss_dssp             -----CCGGGCCH
T ss_pred             cCccccCcccCCH
Confidence            3455677889987

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4e-13  Score=133.36  Aligned_cols=153  Identities=18%  Similarity=0.116  Sum_probs=100.5

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCc
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL  408 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~l  408 (512)
                      +.|+++....+..    +...+|+|.+.+.........-.+|  +|..++||||++....+          .+.++    
T Consensus        41 g~Vyk~~~~~~~~----~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~----------~~~~~----  102 (311)
T d1r0pa_          41 GCVYHGTLLDNDG----KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC----------LRSEG----  102 (311)
T ss_dssp             EEEEEEEECC--------CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEE----------EETTT----
T ss_pred             eEEEEEEEECCCC----EEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEE----------EecCC----
Confidence            5566655433221    0114788887643221111111344  78899999999765533          11111    


Q ss_pred             ceeEEeccccCC-hHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEE
Q psy17422        409 PLRGSLPDMTAD-TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKL  486 (512)
Q Consensus       409 Pl~~~lpdm~~d-~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl  486 (512)
                      .+..++++|... +..++.     ......+...+..++.|++.|+.| |..+|+|||||     |+||++.. .+.+|+
T Consensus       103 ~~~lv~E~~~~g~l~~~~~-----~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK-----~~NILl~~-~~~~kL  171 (311)
T d1r0pa_         103 SPLVVLPYMKHGDLRNFIR-----NETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA-----ARNCMLDE-KFTVKV  171 (311)
T ss_dssp             EEEEEEECCTTCBHHHHHH-----CTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECT-TCCEEE
T ss_pred             ceEEEEEEeecCchhhhhc-----cccccchHHHHHHHHHHHHHhhhhhcccCcccCCcc-----HHhEeECC-CCCEEE
Confidence            277899999854 333332     122345667778899999999999 99999999999     99999975 489999


Q ss_pred             ecCCCCCCCC------CCCccCeeeeeeeccC
Q psy17422        487 CDFGSASWSH------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       487 ~DfGlar~~~------~~~~t~yv~tr~YraP  512 (512)
                      +|||+++...      ....+.+.+|..|+||
T Consensus       172 ~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aP  203 (311)
T d1r0pa_         172 ADFGLARDMYDKEFDSVHNKTGAKLPVKWMAL  203 (311)
T ss_dssp             CSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCH
T ss_pred             ecccchhhccccccccceecccccccccccCh
Confidence            9999987321      1223457889999998

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.4e-13  Score=133.61  Aligned_cols=142  Identities=15%  Similarity=0.111  Sum_probs=101.3

Q ss_pred             hHhHHHHhhhhcCCCCCchHHHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        350 FEEAMKAVNFALIPTTVPSSVAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       350 ~~eAik~v~~~~~~~~i~~~~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      ..+|+|.++..........-.+|  ++..++||||++....+           ..    ..+++.++++|. +++..|+.
T Consensus        51 ~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~-----------~~----~~~~~lv~e~~~~g~l~~~~~  115 (308)
T d1p4oa_          51 TRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV-----------SQ----GQPTLVIMELMTRGDLKSYLR  115 (308)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE-----------CS----SSSCEEEEECCTTCBHHHHHH
T ss_pred             cEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEE-----------ec----CCceeEEEeecCCCCHHHHHH
Confidence            36899987643211110011344  68889999999876655           11    124889999997 67777776


Q ss_pred             hHHhh----hhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCCC----C
Q psy17422        427 LQQLY----RDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSH----E  497 (512)
Q Consensus       427 L~~iy----~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~~----~  497 (512)
                      ....-    ......+...+..++.|++.|+.| |.++|+|||||     |+||++.. ++.+|++|||+|+...    .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk-----~~NiLld~-~~~~Kl~DFGla~~~~~~~~~  189 (308)
T d1p4oa_         116 SLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLA-----ARNCMVAE-DFTVKIGDFGMTRDIYETDYY  189 (308)
T ss_dssp             HHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCS-----GGGEEECT-TCCEEECCTTCCCGGGGGGCE
T ss_pred             hcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEc-----CCceeecC-CceEEEeecccceeccCCcce
Confidence            43321    112335778888999999999999 99999999999     99999975 5899999999998322    1


Q ss_pred             CCccCeeeeeeeccC
Q psy17422        498 NEITPYLVSRFYRAP  512 (512)
Q Consensus       498 ~~~t~yv~tr~YraP  512 (512)
                      ...+..++|..|+||
T Consensus       190 ~~~~~~~~t~~y~aP  204 (308)
T d1p4oa_         190 RKGGKGLLPVRWMSP  204 (308)
T ss_dssp             EGGGSSEECGGGCCH
T ss_pred             eeccceecccccCCH
Confidence            223556889999987

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=2.7e-13  Score=133.78  Aligned_cols=140  Identities=11%  Similarity=0.063  Sum_probs=95.7

Q ss_pred             HhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.+...... ..... .+|  +|+.++||||+.....+           ...    -++..++++|. +++..++.
T Consensus        45 ~vAvK~i~~~~~~-~~~~~~~~E~~il~~l~h~niv~~~~~~-----------~~~----~~~~~v~e~~~~g~L~~~l~  108 (301)
T d1lufa_          45 MVAVKMLKEEASA-DMQADFQREAALMAEFDNPNIVKLLGVC-----------AVG----KPMCLLFEYMAYGDLNEFLR  108 (301)
T ss_dssp             EEEEEECCTTCCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEE-----------CSS----SSCEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEEChhcCh-HHHHHHHHHHHHHHhcCCCCcccceeee-----------ccC----CceEEEEEecCCCcHHHHHH
Confidence            6899987543211 11122 344  78999999999766544           111    23778899987 56677664


Q ss_pred             hHHh------------------hhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEe
Q psy17422        427 LQQL------------------YRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLC  487 (512)
Q Consensus       427 L~~i------------------y~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~  487 (512)
                      ....                  +......+...+..++.|++.|+.| |..+|+|||||     |+||++.. ++.+|++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlK-----p~NILld~-~~~~Kl~  182 (301)
T d1lufa_         109 SMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA-----TRNCLVGE-NMVVKIA  182 (301)
T ss_dssp             HTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECG-GGCEEEC
T ss_pred             hcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEc-----ccceEECC-CCcEEEc
Confidence            3211                  1222346778899999999999999 99999999999     99999975 4889999


Q ss_pred             cCCCCCCC----CCCCccCeeeeeeeccC
Q psy17422        488 DFGSASWS----HENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~----~~~~~t~yv~tr~YraP  512 (512)
                      |||+|+..    .....+...+|..|+||
T Consensus       183 DFGls~~~~~~~~~~~~~~~~~~~~y~aP  211 (301)
T d1lufa_         183 DFGLSRNIYSADYYKADGNDAIPIRWMPP  211 (301)
T ss_dssp             CCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             cchhheeccCCccccccCCCCcCcCcCCH
Confidence            99998722    11223456788899997

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=7.3e-13  Score=130.18  Aligned_cols=150  Identities=11%  Similarity=-0.040  Sum_probs=103.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHHHHHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCCcce
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPL  410 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~ell~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl  410 (512)
                      |.|+++.+..+|.       .+|+|.+........+-. ..++++.++|+|++.....+          ... +   -..
T Consensus        21 G~Vy~a~~~~~~~-------~vAvK~~~~~~~~~~~~~-E~~i~~~l~~~~~i~~~~~~----------~~~-~---~~~   78 (299)
T d1ckia_          21 GDIYLGTDIAAGE-------EVAIKLECVKTKHPQLHI-ESKIYKMMQGGVGIPTIRWC----------GAE-G---DYN   78 (299)
T ss_dssp             SEEEEEEETTTTE-------EEEEEEEESCTTSCCHHH-HHHHHHHSTTSTTCCCEEEE----------EEE-T---TEE
T ss_pred             cEEEEEEECCCCC-------EEEEEEEchhccCHHHHH-HHHHHHHccCCCcccEEEEE----------Eec-C---CEE
Confidence            6788888877777       899997654322222211 22378888877765432211          111 1   136


Q ss_pred             eEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccC--CCCeEEEe
Q psy17422        411 RGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNE--SKLVLKLC  487 (512)
Q Consensus       411 ~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~--~~~~~Kl~  487 (512)
                      ..+|++|..++..++..     .+...+...+..++.|++.++.+ |.++|+|||||     |+||++..  ....+|++
T Consensus        79 ~ivme~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiK-----p~NIl~~~~~~~~~vkl~  148 (299)
T d1ckia_          79 VMVMELLGPSLEDLFNF-----CSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK-----PDNFLMGLGKKGNLVYII  148 (299)
T ss_dssp             EEEEECCCCBHHHHHHH-----TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----GGGEEECCGGGTTCEEEC
T ss_pred             EEEEEEcCCchhhhhhh-----ccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----HhhccccccCCCceeeee
Confidence            77899998876554432     23357889999999999999999 99999999999     99998653  23579999


Q ss_pred             cCCCCCCCC---------CCCccCeeeeeeeccC
Q psy17422        488 DFGSASWSH---------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       488 DfGlar~~~---------~~~~t~yv~tr~YraP  512 (512)
                      |||+|+...         .......+||+.|+||
T Consensus       149 DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  182 (299)
T d1ckia_         149 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASI  182 (299)
T ss_dssp             CCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCH
T ss_pred             ccCcceeccccccccceeccccCCcCCCccccCH
Confidence            999987321         1123567899999998

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.5e-13  Score=131.64  Aligned_cols=141  Identities=15%  Similarity=0.105  Sum_probs=97.8

Q ss_pred             HhHHHHhhhhcCCCCCchHHHH--HHhhC-CCCCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHHHHH
Q psy17422        351 EEAMKAVNFALIPTTVPSSVAS--ILNDN-ACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTRYIA  426 (512)
Q Consensus       351 ~eAik~v~~~~~~~~i~~~~~e--ll~~~-~~~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~yv~  426 (512)
                      .+|+|.++..........-.+|  ++..+ +||||++....+           ...    -+++.+|++|. .++..++.
T Consensus        55 ~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~-----------~~~----~~~~lvmE~~~~g~l~~~l~  119 (311)
T d1t46a_          55 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC-----------TIG----GPTLVITEYCCYGDLLNFLR  119 (311)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----------CSS----SSCEEEEECCTTEEHHHHHH
T ss_pred             EEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEE-----------eeC----CEEEEEEEcCCCCCHHHHHH
Confidence            7899887643211111111233  45555 699999877665           111    23788999997 46666654


Q ss_pred             hHH------------hhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCC
Q psy17422        427 LQQ------------LYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSAS  493 (512)
Q Consensus       427 L~~------------iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar  493 (512)
                      -..            ....+...+...+..++.|++.|+.+ |.++|+|||||     |+||++... +..|++|||+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLK-----p~NIl~~~~-~~~ki~DfG~~~  193 (311)
T d1t46a_         120 RKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLA-----ARNILLTHG-RITKICDFGLAR  193 (311)
T ss_dssp             HTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEEETT-TEEEECCCGGGS
T ss_pred             hccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccc-----ccccccccc-Ccccccccchhe
Confidence            321            11233457888999999999999999 99999999999     999999764 899999999998


Q ss_pred             CCCC----CCccCeeeeeeeccC
Q psy17422        494 WSHE----NEITPYLVSRFYRAP  512 (512)
Q Consensus       494 ~~~~----~~~t~yv~tr~YraP  512 (512)
                      ....    ...+..++|..|+||
T Consensus       194 ~~~~~~~~~~~~~~~gt~~y~aP  216 (311)
T d1t46a_         194 DIKNDSNYVVKGNARLPVKWMAP  216 (311)
T ss_dssp             CTTSCTTSEECSSSEECGGGCCH
T ss_pred             eccCCCcceEeeecccChHHcCH
Confidence            4321    223567899999997

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4e-13  Score=132.81  Aligned_cols=145  Identities=17%  Similarity=0.035  Sum_probs=98.8

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchHHH--HHH--hhCCCCCCCcCCchhhhhHHhhhhhhhcCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVA--SIL--NDNACVNLTSKSEPFWILAKAVKDFVDNEGNG  406 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~~~--ell--~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~  406 (512)
                      +.|+++..  +|.       .+|+|.+....    .....+  |++  ..++||||++....++          . ++..
T Consensus        17 g~Vy~~~~--~g~-------~vAvK~~~~~~----~~~~~~e~ei~~~~~~~HpnIv~~~~~~~----------~-~~~~   72 (303)
T d1vjya_          17 GEVWRGKW--RGE-------EVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFIAADN----------K-DNGT   72 (303)
T ss_dssp             SEEEEEEE--TTE-------EEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEE----------E-ECSS
T ss_pred             eEEEEEEE--CCE-------EEEEEEECccc----hhHHHHHHHHHHHhhCCCCcCcceEEEEE----------e-CCCc
Confidence            56666653  354       89999774321    112223  343  4578999997655441          1 2223


Q ss_pred             CcceeEEeccccC-ChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC--------CCCChHHHHhhcccccccc
Q psy17422        407 NLPLRGSLPDMTA-DTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS--------SAITEAQVKLFCRNASFIH  476 (512)
Q Consensus       407 ~lPl~~~lpdm~~-d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~--------~~I~hrdIK~Fc~n~~nIl  476 (512)
                      ...++.+||+|.. ++..+++      + ...+......++.+++.++.+ |.        ++|+|||||     |+||+
T Consensus        73 ~~~~~lv~Ey~~~g~L~~~l~------~-~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlK-----p~NIL  140 (303)
T d1vjya_          73 WTQLWLVSDYHEHGSLFDYLN------R-YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK-----SKNIL  140 (303)
T ss_dssp             SEEEEEEEECCTTCBHHHHHH------H-CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCC-----GGGEE
T ss_pred             ceEEEEEEecccCCCHHHHHh------c-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccC-----ccceE
Confidence            3457899999974 6666663      1 236777888899999999988 75        699999999     99999


Q ss_pred             ccCCCCeEEEecCCCCCCCC------CCCccCeeeeeeeccC
Q psy17422        477 VNESKLVLKLCDFGSASWSH------ENEITPYLVSRFYRAP  512 (512)
Q Consensus       477 l~~~~~~~Kl~DfGlar~~~------~~~~t~yv~tr~YraP  512 (512)
                      +.. ++.+|++|||+++...      ......++||+.|+||
T Consensus       141 l~~-~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aP  181 (303)
T d1vjya_         141 VKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP  181 (303)
T ss_dssp             ECT-TSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCH
T ss_pred             EcC-CCCeEEEecCccccccCCCcceeccccceecccCcCCh
Confidence            975 5899999999987321      1124568999999998

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.2e-13  Score=132.59  Aligned_cols=135  Identities=16%  Similarity=0.102  Sum_probs=95.3

Q ss_pred             HhHHHHhhhhc--CCCCCchH-HHH--HHhhCCC-CCCCcCCchhhhhHHhhhhhhhcCCCCCcceeEEecccc-CChHH
Q psy17422        351 EEAMKAVNFAL--IPTTVPSS-VAS--ILNDNAC-VNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMT-ADTTR  423 (512)
Q Consensus       351 ~eAik~v~~~~--~~~~i~~~-~~e--ll~~~~~-~ni~~~~~~fw~l~~alk~F~~~~~~~~lPl~~~lpdm~-~d~~~  423 (512)
                      .+|+|.+.+..  ........ .+|  +++.++| |||+.+...|           +...    .++.++++|. .++..
T Consensus        54 ~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~-----------~~~~----~~~~v~e~~~~~~L~~  118 (322)
T d1vzoa_          54 LYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF-----------QTET----KLHLILDYINGGELFT  118 (322)
T ss_dssp             EEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE-----------EETT----EEEEEECCCCSCBHHH
T ss_pred             EEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeee-----------ccCC----ceeeeeecccccHHHH
Confidence            89999886532  11122222 233  5777766 7999776655           2211    2778899998 46555


Q ss_pred             HHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCCC---CCCC
Q psy17422        424 YIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWS---HENE  499 (512)
Q Consensus       424 yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~~---~~~~  499 (512)
                      ++.      .........++.++.|++.|+.| |..+|+|||||     |+||++.. .+.+|++|||+++..   ....
T Consensus       119 ~i~------~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiK-----p~Nill~~-~~~vkL~DFG~a~~~~~~~~~~  186 (322)
T d1vzoa_         119 HLS------QRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK-----LENILLDS-NGHVVLTDFGLSKEFVADETER  186 (322)
T ss_dssp             HHH------HHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----GGGEEECT-TSCEEESCSSEEEECCGGGGGG
T ss_pred             HHH------hcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCC-----ccceeecC-CCCEEEeeccchhhhccccccc
Confidence            543      33345677899999999999999 99999999999     99999976 489999999998732   2222


Q ss_pred             ccCeeeeeeeccC
Q psy17422        500 ITPYLVSRFYRAP  512 (512)
Q Consensus       500 ~t~yv~tr~YraP  512 (512)
                      .....+|+.|+||
T Consensus       187 ~~~~~g~~~~~~p  199 (322)
T d1vzoa_         187 AYDFCGTIEYMAP  199 (322)
T ss_dssp             GCGGGSCCTTCCH
T ss_pred             ccccccccccchh
Confidence            3456788888876

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.8e-12  Score=121.28  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCCCCCcCCchhhhhHHhhhhhhhcCCCCC
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGN  407 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~ni~~~~~~fw~l~~alk~F~~~~~~~~  407 (512)
                      |.|.++..  +|.       .+|+|.+.+    ...... .+|  +++.++||||++..+.+          .+..    
T Consensus        21 g~Vy~~~~--~~~-------~vAvK~i~~----~~~~~~~~~E~~~l~~l~HpnIv~~~g~~----------~~~~----   73 (262)
T d1byga_          21 GDVMLGDY--RGN-------KVAVKCIKN----DATAQAFLAEASVMTQLRHSNLVQLLGVI----------VEEK----   73 (262)
T ss_dssp             CEEEEEEE--TTE-------EEEEEECCC----CC--HHHHHTHHHHTTCCCTTBCCEEEEE----------CCC-----
T ss_pred             eEEEEEEE--CCe-------EEEEEEECc----HHHHHHHHHHHHHHHhCCCCCEeeEEEEE----------EecC----
Confidence            55666554  243       689988754    222333 344  78889999999876654          1211    


Q ss_pred             cceeEEecccc-CChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEE
Q psy17422        408 LPLRGSLPDMT-ADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLK  485 (512)
Q Consensus       408 lPl~~~lpdm~-~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~K  485 (512)
                      -.++.+++++. .++.+|+.-+.    +...+...+..++.|++.|+.| |..+|+|+|||     |+||++.. .+..|
T Consensus        74 ~~~~lv~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlk-----p~Nil~~~-~~~~k  143 (262)
T d1byga_          74 GGLYIVTEYMAKGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA-----ARNVLVSE-DNVAK  143 (262)
T ss_dssp             -CCEEEECCCTTEEHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----GGGEEECT-TSCEE
T ss_pred             CcEEEEEeccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHhhccccccCceeccccc-----hHhheecC-CCCEe
Confidence            23789999997 57777765321    2236778899999999999999 99999999999     99999975 48999


Q ss_pred             EecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        486 LCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       486 l~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      ++|||+++.... ......+|..|+||
T Consensus       144 l~dfg~s~~~~~-~~~~~~~~~~y~aP  169 (262)
T d1byga_         144 VSDFGLTKEASS-TQDTGKLPVKWTAP  169 (262)
T ss_dssp             ECCCCC-------------CCTTTSCH
T ss_pred             ecccccceecCC-CCccccccccCCCh
Confidence            999999985322 22345678889887

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=8.9e-11  Score=117.61  Aligned_cols=151  Identities=19%  Similarity=0.200  Sum_probs=94.3

Q ss_pred             cchhhhccccCCCCCCCcChHhHHHHhhhhcCCCCCchH-HHH--HHhhCCCC-----------CCCcCCchhhhhHHhh
Q psy17422        331 SSVARIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSS-VAS--ILNDNACV-----------NLTSKSEPFWILAKAV  396 (512)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~n~~eAik~v~~~~~~~~i~~~-~~e--ll~~~~~~-----------ni~~~~~~fw~l~~al  396 (512)
                      |.|+++.+..+|.       .+|+|.++...   ...+. .+|  +++.++|+           ||+...+.|       
T Consensus        27 g~Vy~~~~~~~g~-------~vAvKvi~~~~---~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~-------   89 (362)
T d1q8ya_          27 STVWLAKDMVNNT-------HVAMKIVRGDK---VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF-------   89 (362)
T ss_dssp             EEEEEEEETTTTE-------EEEEEEECSCH---HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE-------
T ss_pred             eEEEEEEECCCCC-------EEEEEEEeccc---cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEe-------
Confidence            7889999988888       88999875321   11112 233  45555554           444433322       


Q ss_pred             hhhhhcCCCCCcceeEEeccccCChHHHHHhHHhhhhccCCChHHHHHHHHHHHHHhCC-CC-CCCChHHHHhhcccccc
Q psy17422        397 KDFVDNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQ-PS-SAITEAQVKLFCRNASF  474 (512)
Q Consensus       397 k~F~~~~~~~~lPl~~~lpdm~~d~~~yv~L~~iy~~ka~~d~~~v~~~~~qlL~~l~~-h~-~~I~hrdIK~Fc~n~~n  474 (512)
                         ......   -...++..+..... ... ..........+...++.++.|++.|+.+ |. .+|+|||||     |+|
T Consensus        90 ---~~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlK-----p~N  156 (362)
T d1q8ya_          90 ---NHKGPN---GVHVVMVFEVLGEN-LLA-LIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIK-----PEN  156 (362)
T ss_dssp             ---EEEETT---EEEEEEEECCCCEE-HHH-HHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCS-----GGG
T ss_pred             ---eecccc---ceeeeeeecccccc-ccc-ccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCC-----hhH
Confidence               000000   02233333332221 111 1223334457888999999999999999 86 899999999     999


Q ss_pred             ccccCCC-----CeEEEecCCCCCCCCCCCccCeeeeeeeccC
Q psy17422        475 IHVNESK-----LVLKLCDFGSASWSHENEITPYLVSRFYRAP  512 (512)
Q Consensus       475 Ill~~~~-----~~~Kl~DfGlar~~~~~~~t~yv~tr~YraP  512 (512)
                      |++....     ..+|++|||.++.... .....++|++|+||
T Consensus       157 Ill~~~~~~~~~~~~kl~dfg~s~~~~~-~~~~~~gt~~y~aP  198 (362)
T d1q8ya_         157 VLMEIVDSPENLIQIKIADLGNACWYDE-HYTNSIQTREYRSP  198 (362)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTCEETTB-CCCSCCSCGGGCCH
T ss_pred             eeeeccCcccccceeeEeeccccccccc-ccccccccccccCh
Confidence            9986431     2489999999874432 23456899999998

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.59  E-value=9.9e-05  Score=60.57  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |++.+|+|+|.|.+|..-++.|...|. ++++++.+
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~   44 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT   44 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            678999999999999999999999997 59999865

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.50  E-value=3.8e-06  Score=75.68  Aligned_cols=50  Identities=12%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHHHhCC-CCCCCChHHHHhhccccccccccCCCCeEEEecCCCCCC
Q psy17422        438 DADVIYRRAQQLLHQLGQ-PSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASW  494 (512)
Q Consensus       438 d~~~v~~~~~qlL~~l~~-h~~~I~hrdIK~Fc~n~~nIll~~~~~~~Kl~DfGlar~  494 (512)
                      +...+..++.|++.++.+ |..+|+|+|||     |+||++..  +.++++|||+|+.
T Consensus       101 ~~~~~~~i~~ql~~~l~~lH~~giiHrDiK-----P~NILv~~--~~~~liDFG~a~~  151 (191)
T d1zara2         101 RVENPDEVLDMILEEVAKFYHRGIVHGDLS-----QYNVLVSE--EGIWIIDFPQSVE  151 (191)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTEECSCCS-----TTSEEEET--TEEEECCCTTCEE
T ss_pred             hhHHHHHHHHHHHHHHHHHhhCCEEEccCC-----hhheeeeC--CCEEEEECCCccc
Confidence            334566788999999999 99999999999     99999974  4588999999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0015  Score=57.82  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=55.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      +++++|+|+|+||+|..++..|...|+++|+|++.+.   ++             -.|+...++++..-.+.. +....-
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~---~~-------------~~~~~~l~~~~~~~~~~~-~~~~~~   78 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---EF-------------FDKALAFAQRVNENTDCV-VTVTDL   78 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS---TT-------------HHHHHHHHHHHHHHSSCE-EEEEET
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch---HH-------------HHHHHHHHHHHHhhcCcc-eEeeec
Confidence            5678999999999999999999999999999998651   10             134555666666555432 222211


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .-.   +...+.+.++|+||++.
T Consensus        79 ~~~---~~~~~~~~~~diiIN~T   98 (182)
T d1vi2a1          79 ADQ---QAFAEALASADILTNGT   98 (182)
T ss_dssp             TCH---HHHHHHHHTCSEEEECS
T ss_pred             ccc---cchhhhhcccceecccc
Confidence            110   11123456889999974

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00089  Score=58.69  Aligned_cols=72  Identities=24%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      +++++|+|+|+||++..++..|...|+ +|+|+...                   ..|++.+++.+.+.++   +.... 
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt-------------------~~ka~~l~~~~~~~~~---~~~~~-   71 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT-------------------VSRAEELAKLFAHTGS---IQALS-   71 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS-------------------HHHHHHHHHHTGGGSS---EEECC-
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEeccch-------------------HHHHHHHHHHHhhccc---ccccc-
Confidence            457899999999999999999999998 59997533                   3577777777766543   22221 


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                       ..      +.-..++|+||++.
T Consensus        72 -~~------~~~~~~~dliIN~T   87 (170)
T d1nyta1          72 -MD------ELEGHEFDLIINAT   87 (170)
T ss_dssp             -SG------GGTTCCCSEEEECC
T ss_pred             -cc------cccccccceeeccc
Confidence             11      11124689999973

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.85  E-value=0.0016  Score=54.36  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|+|+|.+|..+++.|...|. .++++|.|
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCC
Confidence            79999999999999999999997 59999987

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.74  E-value=0.00082  Score=58.47  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      .|++++|+|||+|.+|..++++|.-.|+++++++...                   ..||+.+++.+   +  .++..  
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt-------------------~~ka~~l~~~~---~--~~~~~--   74 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT-------------------YERAVELARDL---G--GEAVR--   74 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS-------------------HHHHHHHHHHH---T--CEECC--
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc-------------------HHHHHHHHHhh---h--ccccc--
Confidence            3689999999999999999999999999999997433                   34666666544   2  23221  


Q ss_pred             CCCcccccCCcccccccceEEecCCC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTNCP  114 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~~~  114 (512)
                        +.    ...+.+.+||+||.+...
T Consensus        75 --~~----~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          75 --FD----ELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             --GG----GHHHHHHTCSEEEECCSS
T ss_pred             --ch----hHHHHhccCCEEEEecCC
Confidence              11    223567799999998543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.0011  Score=56.67  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|++++|+|||.|.+|.+-++.|..+|. ++|+|..+
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3789999999999999999999999997 79999765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.40  E-value=0.0039  Score=54.28  Aligned_cols=34  Identities=12%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDG   44 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~   44 (512)
                      ++++|+|+|+||++..++..|...|+++|+|++.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            5678999999999999999999999999999754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.34  E-value=0.0054  Score=53.77  Aligned_cols=77  Identities=14%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      ++++++|+|+|+||++..++..|  .+.++|+|+..+                   ..|++.+++.+.+..+.-.+....
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR~-------------------~~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIANRT-------------------VEKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEECSS-------------------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeehhh-------------------hhHHHHHHHHHHHhhchhhhhhhh
Confidence            36889999999999999998776  566789987443                   467888888777654432211110


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                            .....+.+.++|++|++.
T Consensus        74 ------~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          74 ------FSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             ------EECTTCCCTTCCEEEECS
T ss_pred             ------hhhhhhccchhhhhccCC
Confidence                  012234566789999973

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.99  E-value=0.0043  Score=54.32  Aligned_cols=71  Identities=13%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      +++++|+|+|+||++-.++..|.. |..+|+|+...                   ..|++.+++.+....   ++.....
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~-------------------~~~a~~l~~~~~~~~---~~~~~~~   72 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRT-------------------FSKTKELAERFQPYG---NIQAVSM   72 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEEG
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccch-------------------HHHHHHHHHHHhhcc---ccchhhh
Confidence            567799999999999999999986 66899997443                   357888888776554   3333221


Q ss_pred             CCcccccCCcccccccceEEec
Q psy17422         90 NPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      .        ..-+.++|++|++
T Consensus        73 ~--------~~~~~~~diiIN~   86 (171)
T d1p77a1          73 D--------SIPLQTYDLVINA   86 (171)
T ss_dssp             G--------GCCCSCCSEEEEC
T ss_pred             c--------cccccccceeeec
Confidence            1        1124689999997

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.92  E-value=0.0039  Score=54.27  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +++|+|+|+|..|+.++..|+..|. +++++|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~   33 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   33 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5799999999999999999999997 79998875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.82  E-value=0.006  Score=52.62  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.+||+|-.|+.+|+||...|. ++++.|.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECc
Confidence            479999999999999999999998 58887754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.78  E-value=0.02  Score=46.80  Aligned_cols=56  Identities=11%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      .++|+|||+|.+|+|+|..|...|. ++|+++...   .=+.++       .++.-++.+.+.+.+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~---~~l~~~-------~~~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP---RLMSRA-------APATLADFVARYHAAQ   85 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS---STTTTT-------SCHHHHHHHHHHHHTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc---cccccc-------CCHHHHHHHHHHHHHC
Confidence            5799999999999999999999997 699998752   112221       2345556666777665

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.0057  Score=52.92  Aligned_cols=80  Identities=16%  Similarity=0.224  Sum_probs=55.1

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVG-SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      .++...||.|+|+|.+|+.++-.|+..|.. ++.|+|-+                   ..|+...+.-|...-+......
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~-------------------~~~a~g~alDl~~~~~~~~~~~   75 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD-------------------TDKLRGEALDLQHGSLFLSTPK   75 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC-------------------HHHHHHHHHHHHHTTTTCSCCE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhhhccHHHHhCcchhcCCCe
Confidence            346778999999999999999999999985 69999755                   2456555666665333222111


Q ss_pred             EeCCCcccccCCcccccccceEEecC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .      ....+.+-+++.|+||.+.
T Consensus        76 ~------~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          76 I------VFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             E------EEESSGGGGTTEEEEEECC
T ss_pred             E------EeccchhhhccccEEEEec
Confidence            0      1123456678999999873

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0052  Score=57.27  Aligned_cols=67  Identities=10%  Similarity=0.009  Sum_probs=54.8

Q ss_pred             HHHHHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeE
Q psy17422          6 GQAALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQG   84 (512)
Q Consensus         6 ~Q~~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i   84 (512)
                      +.++|+++.|+|.| .+|+|.++++.|+..|. ++.+.|.+                   ..+.+.+++.+++.++..++
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   63 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTL   63 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            34568899999997 67999999999999998 58888754                   35778889999998887788


Q ss_pred             EEEeCCCc
Q psy17422         85 DFVDENPQ   92 (512)
Q Consensus        85 ~~~~~~~~   92 (512)
                      ..+..++.
T Consensus        64 ~~~~~Dls   71 (257)
T d1xg5a_          64 IPYRCDLS   71 (257)
T ss_dssp             EEEECCTT
T ss_pred             EEEEccCC
Confidence            77776665

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.45  E-value=0.014  Score=49.99  Aligned_cols=121  Identities=13%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV   93 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~~~~   93 (512)
                      ||.+||+|..|..+|+||...|.. +++.|.+                   ..|+    +.+.+..  ..+   .     
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~-------------------~~~~----~~~~~~~--~~~---~-----   47 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRN-------------------PEAI----ADVIAAG--AET---A-----   47 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSC-------------------HHHH----HHHHHTT--CEE---C-----
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCC-------------------cchh----HHHHHhh--hhh---c-----
Confidence            699999999999999999999984 7777643                   2222    2233321  111   1     


Q ss_pred             cccCCcccccccceEEecCCCCCCCCccccccCcccchhhHHHHHHhhhcCCCCCCCCCCCcchhhccCCCCCCccccEE
Q psy17422         94 LMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMV  173 (512)
Q Consensus        94 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~V  173 (512)
                        ....+..++.|+|+.+=..                +  ......+...+             .+    ....+.-++|
T Consensus        48 --~~~~e~~~~~d~ii~~v~~----------------~--~~v~~v~~~~~-------------~~----~~~~~~g~ii   90 (161)
T d1vpda2          48 --STAKAIAEQCDVIITMLPN----------------S--PHVKEVALGEN-------------GI----IEGAKPGTVL   90 (161)
T ss_dssp             --SSHHHHHHHCSEEEECCSS----------------H--HHHHHHHHSTT-------------CH----HHHCCTTCEE
T ss_pred             --ccHHHHHhCCCeEEEEcCC----------------H--HHHHHHHhCCc-------------ch----hhccCCCCEE
Confidence              2234677888888875110                0  00000010000             00    1112334567


Q ss_pred             EEc-CCChHHHHHHHHHHHhCCCcEEEEeeece
Q psy17422        174 IST-NLPETTLIELSKTLWSLNIPLLACRSYGF  205 (512)
Q Consensus       174 i~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  205 (512)
                      |++ +.+++....+.+.+.+.++-++++...|-
T Consensus        91 id~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg  123 (161)
T d1vpda2          91 IDMSSIAPLASREISDALKAKGVEMLDAPVSGG  123 (161)
T ss_dssp             EECSCCCHHHHHHHHHHHHTTTCEEEECCEESH
T ss_pred             EECCCCCHHHHHHHHHHHHHcCCceecccccCC
Confidence            765 46778888999999999999999887763

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.45  E-value=0.035  Score=47.20  Aligned_cols=74  Identities=18%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh----CCCCeEEEE
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL----NPDCQGDFV   87 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l----np~v~i~~~   87 (512)
                      ++||.|||+|.+|+.++-.|++.|+.++.|+|-+                   ..|++..+.-++..    +..+.+...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~v~~~   63 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-------------------KNMPHGKALDTSHTNVMAYSNCKVSGS   63 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS-------------------SSHHHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc-------------------CCcceeeecchhhhccccCCCcEEEec
Confidence            4699999999999999999999999999999843                   13444444444432    223333321


Q ss_pred             eCCCcccccCCcccccccceEEecCC
Q psy17422         88 DENPQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                               .+.+=+++.|+||.+..
T Consensus        64 ---------~~~~~~~~advvvitag   80 (150)
T d1t2da1          64 ---------NTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             ---------CCGGGGTTCSEEEECCS
T ss_pred             ---------ccccccCCCcEEEEecc
Confidence                     23345678999999843

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.40  E-value=0.068  Score=45.00  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         13 ARICLINA-TGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~-g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      +||.|+|+ |.+|+.++-.|+..|+ +++.++|-+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            68999995 9999999999999998 899999853

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.36  E-value=0.097  Score=42.73  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++++|+|+|.+|..+++.|...|. .++++|.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCc
Confidence            478999999999999999999998 59999988

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.34  E-value=0.0065  Score=52.25  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +++|+|+|+|.+|..+|++|+..|. +++++|.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            6799999999999999999999998 69999887

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.29  E-value=0.0083  Score=52.35  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+||+|||+|..|.++|..|.+.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            46899999999999999999999999889999864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.13  E-value=0.074  Score=45.39  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      ++|+|||+|-+|+.++++|...|. .+|+.+|.+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            469999999999999999999997 367777765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.12  E-value=0.0028  Score=55.56  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +++|.+||+|..|..+++||...|. ++++.|-+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~   34 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            5789999999999999999999998 47887754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.018  Score=50.69  Aligned_cols=88  Identities=14%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCC----hHHHHHHHHHHhhCCCCeEEE
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK----SRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk----~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      ..+||+|||+|..|-+.|..|++.|. ++||+|.+.    .++-++.+...--++    .-.+...+.++..  .|++..
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~----~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~--gV~i~l  114 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS----EIGGQFNIAKQIPGKEEFYETLRYYRRMIEVT--GVTLKL  114 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS----SSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHH--TCEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC----ccCceEEEEEeCcccchHHHHHHHHHHhhhcC--CeEEEe
Confidence            46899999999999999999999997 799998752    234333221111122    2234455556555  355442


Q ss_pred             EeCCCcccccCCcccccccceEEecC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                       ...++      .+...+||.||++.
T Consensus       115 -~~~Vt------~~~~~~~d~vilAt  133 (179)
T d1ps9a3         115 -NHTVT------ADQLQAFDETILAS  133 (179)
T ss_dssp             -SCCCC------SSSSCCSSEEEECC
T ss_pred             -CCEEc------ccccccceeEEEee
Confidence             22232      35567899999873

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.00  E-value=0.02  Score=48.48  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=52.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh----CCCCeEEEE
Q psy17422         14 RICLINA-TGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL----NPDCQGDFV   87 (512)
Q Consensus        14 ~VlivG~-g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l----np~v~i~~~   87 (512)
                      ||.|+|+ |.+|+.++-.|+..|+ +++.|+|-+                 -+..|++..+.-|...    .+.+++...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~-----------------~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~   64 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE-----------------HSINKLEGLREDIYDALAGTRSDANIYVE   64 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG-----------------GGHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch-----------------hhhHhhhcccccchhcccccccCCccccC
Confidence            6999996 9999999999999996 799999865                 1124666666666653    333444433


Q ss_pred             eCCCcccccCCcccccccceEEec
Q psy17422         88 DENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      .       ..+.+-+++.|+||.+
T Consensus        65 ~-------~~d~~~l~~aDvVVit   81 (145)
T d1hyea1          65 S-------DENLRIIDESDVVIIT   81 (145)
T ss_dssp             E-------TTCGGGGTTCSEEEEC
T ss_pred             C-------cchHHHhccceEEEEe
Confidence            2       2234567799999998

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.90  E-value=0.035  Score=47.06  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCC--eEEEE
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDC--QGDFV   87 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v--~i~~~   87 (512)
                      ..+||.|||+|.+|+.++-.|++.|. .++.|+|-+                   ..|++..+.-|....+..  .+...
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~~~   65 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN-------------------ESKAIGDAMDFNHGKVFAPKPVDIW   65 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHTTSSSSCCEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec-------------------cccccchhccHhhCccccCCCeEEE
Confidence            45789999999999999999999997 579999854                   234444455555433221  11111


Q ss_pred             eCCCcccccCCcccccccceEEec
Q psy17422         88 DENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                              ..+.+-+++.|+||.+
T Consensus        66 --------~~d~~~l~daDvvvit   81 (148)
T d1ldna1          66 --------HGDYDDCRDADLVVIC   81 (148)
T ss_dssp             --------ECCGGGTTTCSEEEEC
T ss_pred             --------ECCHHHhccceeEEEe
Confidence                    2345667889999987

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.82  E-value=0.03  Score=48.21  Aligned_cols=78  Identities=12%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      +.+.||.|||+|.+|+.++-.|++.|+ .++.|+|-+                   +.++..-+.-|.............
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~-------------------~~~a~g~alDl~h~~~~~~~~~~~   78 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL-------------------EDKLKGEMMDLQHGSLFLQTPKIV   78 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCCCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cchhHHHHHHHhccccccCCCeEE
Confidence            456799999999999999999999998 679999765                   345555555555422211111000


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                            ...+.+=+++.|+||.+.
T Consensus        79 ------~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          79 ------ADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             ------ECSSGGGGTTCSEEEECC
T ss_pred             ------eccchhhcccccEEEEec
Confidence                  123445578999999873

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.014  Score=45.37  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +++++|+|+|+|..|..+++.|...|. ++++.|..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~   37 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTR   37 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESS
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCC
Confidence            578999999999999999999999997 59999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.67  E-value=0.031  Score=47.34  Aligned_cols=73  Identities=21%  Similarity=0.371  Sum_probs=48.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC--CCeEEEEe
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP--DCQGDFVD   88 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp--~v~i~~~~   88 (512)
                      ++||.|||+|.+|+.++-.|+..|+ .++.|+|-+                   +.|++..+.-|....+  ........
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~~~g~~~Dl~~a~~~~~~~~~~~~   61 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN-------------------EAKVKADQIDFQDAMANLEAHGNIVI   61 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSSSCCEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc-------------------cchhhhHHHhhhccccccCCccceec
Confidence            4789999999999999999999995 679988754                   2344444444443322  11222222


Q ss_pred             CCCcccccCCcccccccceEEec
Q psy17422         89 ENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      .        +.+-+++.|+||.+
T Consensus        62 ~--------d~~~l~~adiVVit   76 (146)
T d1hyha1          62 N--------DWAALADADVVIST   76 (146)
T ss_dssp             S--------CGGGGTTCSEEEEC
T ss_pred             c--------CHHHhccccEEEEe
Confidence            2        33457899999987

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.53  E-value=0.046  Score=45.81  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      ||.|+|+|.+|+.++-.|++.|. .++.|+|-+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            79999999999999999999996 689999854

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.50  E-value=0.092  Score=43.94  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .||.|||+|.+|+.+|-.|++.|+.++.++|.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            589999999999999999999999999998854

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.37  E-value=0.043  Score=46.24  Aligned_cols=73  Identities=21%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh---hCCCCeEEEEe
Q psy17422         13 ARICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE---LNPDCQGDFVD   88 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~---lnp~v~i~~~~   88 (512)
                      +||.|||+|.+|+.++-.|++.|+ .++.|+|-+                   ..|++.-+.-|+.   ..+...+.. .
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~-------------------~~~~~g~a~Dl~~a~~~~~~~~i~~-~   61 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA-------------------KERVEAEVLDMQHGSSFYPTVSIDG-S   61 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHHTGGGSTTCEEEE-E
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cccchhHHHHHHhccccCCCceeec-C
Confidence            589999999999999999999999 479998844                   2344444444444   333333322 1


Q ss_pred             CCCcccccCCcccccccceEEecCC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                              .+.+-+++.|+||.+..
T Consensus        62 --------~~~~~~~daDvVVitaG   78 (143)
T d1llda1          62 --------DDPEICRDADMVVITAG   78 (143)
T ss_dssp             --------SCGGGGTTCSEEEECCC
T ss_pred             --------CCHHHhhCCcEEEEecc
Confidence                    22334678899999843

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.36  E-value=0.031  Score=45.49  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|.|.+|+|+|..|...|. ++|+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4789999999999999999999997 59999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.30  E-value=0.098  Score=44.04  Aligned_cols=35  Identities=17%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      .+.||.|||+|.+|+.++..|+..|+ .++.|+|-+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            35699999999999999999999996 689999855

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.15  E-value=0.031  Score=49.22  Aligned_cols=79  Identities=10%  Similarity=0.149  Sum_probs=54.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      -|++++|+|.| .||+|.++++.|+..|. ++++++.+                   ..|.+.+++.+.+.. .+.+...
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~-~~~~~~~   78 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRK-------------------LDKAQAAADSVNKRF-KVNVTAA   78 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHH-TCCCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccc-------------------hHHHHHHHHHHHhcc-chhhhhh
Confidence            46889999998 79999999999999997 69998766                   235556666666543 3333322


Q ss_pred             eCCCcccccCCcccccccceEEec
Q psy17422         88 DENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      ...-.   +...+++.+.|+||++
T Consensus        79 d~~~~---~~~~~~~~~iDilin~   99 (191)
T d1luaa1          79 ETADD---ASRAEAVKGAHFVFTA   99 (191)
T ss_dssp             ECCSH---HHHHHHTTTCSEEEEC
T ss_pred             hcccH---HHHHHHhcCcCeeeec
Confidence            22111   2334667888999986

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.15  Score=42.71  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +-||+|+|+|.+|..+++.|...|.. +++||.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d   35 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEecc
Confidence            46899999999999999999999974 8888877

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.97  E-value=0.024  Score=48.41  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++.||.|||+|.+|+.++-.|.+.|+.++.++|-+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence            46799999999999999999999999999999843

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.96  E-value=0.093  Score=44.57  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=27.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ||.|||+|-+|+.+++.|...|. +++.+|.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999997 57777665

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.13  Score=42.86  Aligned_cols=70  Identities=20%  Similarity=0.256  Sum_probs=47.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh---hCCCCeEEEEeC
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE---LNPDCQGDFVDE   89 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~---lnp~v~i~~~~~   89 (512)
                      ||.|||+|.+|+.++-.|+..|+ .++.|+|-+                   +.|++..+.-+..   ..+.+.+.  ..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~~~Dl~~~~~~~~~~~~~--~~   60 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD-------------------KKRAEGDALDLIHGTPFTRRANIY--AG   60 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSCCCEEE--EC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc-------------------cccccchhcccccccccccccccc--CC
Confidence            79999999999999999999998 579998844                   2344444444443   33333332  22


Q ss_pred             CCcccccCCcccccccceEEecC
Q psy17422         90 NPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                              +.+=+++.|+||.+.
T Consensus        61 --------~~~~~~~adivvita   75 (140)
T d1a5za1          61 --------DYADLKGSDVVIVAA   75 (140)
T ss_dssp             --------CGGGGTTCSEEEECC
T ss_pred             --------cHHHhcCCCEEEEec
Confidence                    233478999999984

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.042  Score=44.27  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      +||+|||.|.+|+|+|-.|...|. ++|+++...   . +.+++     |  +.-++.+.+.+++.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~---~-~l~~~-----d--~~~~~~~~~~l~~~   75 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD---A-PLPSF-----D--PMISETLVEVMNAE   75 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS---S-SSTTS-----C--HHHHHHHHHHHHHH
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeecc---h-hhhhc-----c--hhhHHHHHHHHHHC
Confidence            689999999999999999999998 799998752   1 22221     1  23445666777765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.68  E-value=0.031  Score=45.65  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=40.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      .++|+|+|.|.+|+|+|..|...|. ++|+++...   .=+.+       ..++.-+..+.+.+++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~---~~l~~-------~~d~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD---RPLGV-------YLDKEFTDVLTEEMEAN   85 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS---STTTT-------TCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccce-EEEEEEecC---ccccc-------ccchhhHHHHHHHhhcC
Confidence            4689999999999999999999998 599998751   11222       13344556666666654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.65  E-value=0.032  Score=45.19  Aligned_cols=54  Identities=13%  Similarity=0.185  Sum_probs=39.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      ++|+|+|+|.+|+|+|-.|...|. ++||++...    .+-++|       .+.-++.+.+.+++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~----~il~~~-------d~~~~~~~~~~l~~~   76 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN----RILRKF-------DESVINVLENDMKKN   76 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS----SSCTTS-------CHHHHHHHHHHHHHT
T ss_pred             CEEEEECCchHHHHHHHHHHhccc-cceeeehhc----cccccc-------cHHHHHHHHHHHHhC
Confidence            689999999999999999999997 599998641    122321       234456666666654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.63  E-value=0.14  Score=42.77  Aligned_cols=71  Identities=11%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh----hCCCCeEEEEe
Q psy17422         14 RICLINATGLGTEILKSLVLPGV-GSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE----LNPDCQGDFVD   88 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~----lnp~v~i~~~~   88 (512)
                      ||.|||+|.+|+.++-.|+..|+ .++.|+|-+                   +.|++..+.-|+.    .....++..  
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~~~g~alDl~~~~~~~~~~~~i~~--   60 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA-------------------EDLAVGEAMDLAHAAAGIDKYPKIVG--   60 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS-------------------HHHHHHHHHHHHHHHHTTTCCCEEEE--
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc-------------------cchhhHHHHHHhhhccccCCCCcccc--
Confidence            78999999999999999998887 789999743                   2344444444443    222233332  


Q ss_pred             CCCcccccCCcccccccceEEecC
Q psy17422         89 ENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                             ..+.+-+++.|+||.+.
T Consensus        61 -------~~d~~~~~~adiVvita   77 (142)
T d1ojua1          61 -------GADYSLLKGSEIIVVTA   77 (142)
T ss_dssp             -------ESCGGGGTTCSEEEECC
T ss_pred             -------CCCHHHhccccEEEEec
Confidence                   22335677899999984

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.59  E-value=0.027  Score=52.18  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=51.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      ||+++.++|-| .+|+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+..++..+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~~~~~~~   60 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLTT   60 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            47788888887 66999999999999997 58888754                   34667788888888888888877


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        61 ~~Dvt   65 (258)
T d1iy8a_          61 VADVS   65 (258)
T ss_dssp             ECCTT
T ss_pred             eccCC
Confidence            77665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.56  E-value=0.032  Score=44.96  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++|+|||+|.+|+|+|..|...|. ++||++..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~   54 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEGA   54 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEEec
Confidence            689999999999999999999997 59999754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.03  Score=45.69  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++++|||+|.+|+|+|-.|...|. ++||++..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~   55 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQ   55 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCc-ceeEEEec
Confidence            689999999999999999999998 59999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.22  E-value=0.038  Score=51.54  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKIS   48 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~   48 (512)
                      .+|+|||+|.+|+.+|..|+..|.++++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            479999999999999999999999899999987543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.20  E-value=0.041  Score=44.22  Aligned_cols=55  Identities=9%  Similarity=0.215  Sum_probs=39.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN   79 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln   79 (512)
                      .+|+|+|+|.+|+|+|..|...|. ++|+++..    ..+-++|       .+.-++.+.+.+.+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~----~~il~~~-------d~~~~~~l~~~l~~~g   76 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEAR----ERILPTY-------DSELTAPVAESLKKLG   76 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS----SSSSTTS-------CHHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEeee----ccccccc-------cchhHHHHHHHHHhhc
Confidence            689999999999999999999998 59999764    1222221       1234456666777653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.19  E-value=0.037  Score=48.77  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|||+|..|...|..|...|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.055  Score=44.05  Aligned_cols=53  Identities=17%  Similarity=0.137  Sum_probs=39.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      .+++|||+|.+|+|+|..|...|. ++||+..+.     +-++|       .+.-++.+.+.+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~-----~l~~~-------D~~~~~~l~~~l~~~   73 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI-----LLRGF-------DQDMANKIGEHMEEH   73 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS-----SSTTS-------CHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech-----hhccC-------CHHHHHHHHHHHHHC
Confidence            589999999999999999999998 699997542     22322       233456677777765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.13  E-value=0.046  Score=45.24  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .++|+|||+|.+|+|+|..|...|+ ++|+++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            5789999999999999999999998 59999875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.09  E-value=0.24  Score=41.62  Aligned_cols=36  Identities=14%  Similarity=0.018  Sum_probs=28.7

Q ss_pred             ccEEEE-cCCChHHHHHHHHHHHhCCCcEEEEeeece
Q psy17422        170 FHMVIS-TNLPETTLIELSKTLWSLNIPLLACRSYGF  205 (512)
Q Consensus       170 ~~~Vi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  205 (512)
                      -.++|+ ++.+++...++.+.+.+.++.++++-..|-
T Consensus        82 ~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg  118 (156)
T d2cvza2          82 GTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGG  118 (156)
T ss_dssp             TEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESH
T ss_pred             cccccccccCCHHHHHHHHHHHHHcCCeEEeccccCc
Confidence            344554 567888888999999999999999988764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.02  E-value=0.1  Score=43.81  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|.+||+|-+|..++++|..+|-.++.+.|.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            68999999999999999999997677776554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.052  Score=44.32  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      +||+|+|.|.+|+|+|..|...|. ++|+++...    .+-++       ..+.-++.+.+.+++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~----~~l~~-------~d~~~~~~~~~~l~~~   76 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD----KVLRS-------FDSMISTNCTEELENA   76 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS----SSCTT-------SCHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc----ccccc-------hhhHHHHHHHHHHHHC
Confidence            689999999999999999999998 599998741    11122       1234556666667664

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.52  E-value=0.056  Score=43.75  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++++|+|.|.+|+|+|..|...|. ++|++...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~   54 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGA-EVTVLEAM   54 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCC-ceEEEEee
Confidence            689999999999999999999998 59988754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.45  E-value=0.077  Score=47.39  Aligned_cols=35  Identities=17%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      .+||+|||+|..|..+|..|...|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999998 6999997654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.38  E-value=0.042  Score=50.82  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             HHHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422          8 AALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus         8 ~~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      +||+.+.++|-| .+|+|.++++.|+..|. ++.++|.+                   +.+.+.+++.+.+.+.  ++..
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~--~~~~   58 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN-------------------REALEKAEASVREKGV--EARS   58 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTS--CEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            368889999987 67999999999999997 58888764                   3456677777776654  4555


Q ss_pred             EeCCCc
Q psy17422         87 VDENPQ   92 (512)
Q Consensus        87 ~~~~~~   92 (512)
                      +..++.
T Consensus        59 ~~~Dv~   64 (260)
T d1zema1          59 YVCDVT   64 (260)
T ss_dssp             EECCTT
T ss_pred             EEccCC
Confidence            555544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.34  Score=41.06  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|.-++.-+...|..+++++|.+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            4689999999999999999999999999999866

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.19  E-value=0.27  Score=41.01  Aligned_cols=72  Identities=8%  Similarity=0.082  Sum_probs=48.3

Q ss_pred             CcEEEEc-CChHHHHHHHHHHhcCCC-eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHh---hCCCCeEEEE
Q psy17422         13 ARICLIN-ATGLGTEILKSLVLPGVG-SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLE---LNPDCQGDFV   87 (512)
Q Consensus        13 ~~VlivG-~g~lg~ei~knLvl~Gv~-~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~---lnp~v~i~~~   87 (512)
                      +||.|+| +|.+|+.++-.|+..|+. ++.|+|-+.                 .+.+++..+.-|..   ....+++.  
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~i~--   61 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD-----------------KEDDTVGQAADTNHGIAYDSNTRVR--   61 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG-----------------GHHHHHHHHHHHHHHHTTTCCCEEE--
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC-----------------cccccceeecchhhcccccCCceEe--
Confidence            6899999 699999999999999985 588887431                 12344444445553   33444433  


Q ss_pred             eCCCcccccCCcccccccceEEec
Q psy17422         88 DENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      ...        .+=+++.|+||.+
T Consensus        62 ~~~--------~~~~~~aDiVvit   77 (142)
T d1o6za1          62 QGG--------YEDTAGSDVVVIT   77 (142)
T ss_dssp             ECC--------GGGGTTCSEEEEC
T ss_pred             eCC--------HHHhhhcCEEEEe
Confidence            222        2335799999987

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.067  Score=45.10  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      .||+|+|+|++|+.++..|..+|. ++++++.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCH
Confidence            379999999999999999999998 699998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.99  E-value=0.065  Score=48.42  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+||+|||+|..|...|..|+..|+ +++|+|..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            4789999999999999999999998 69999853

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.99  E-value=0.065  Score=46.25  Aligned_cols=32  Identities=6%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -+|.|||+|..|+.++++|+..|.. +++.|.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECC
Confidence            4799999999999999999999985 7777654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.63  E-value=0.092  Score=42.13  Aligned_cols=33  Identities=6%  Similarity=0.052  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .++|+|+|.|.+|+|+|..|...|. ++++++..
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~   54 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRT   54 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch-hheEeecc
Confidence            4789999999999999999999996 59998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.54  E-value=0.074  Score=43.52  Aligned_cols=32  Identities=13%  Similarity=0.228  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+++|+|.|.+|+|+|-.+...|. ++||++..
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~   58 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMM   58 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCC-EEEEEEee
Confidence            689999999999999999999998 59999764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.50  E-value=0.087  Score=44.35  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCC-CeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGV-GSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv-~~itiiD~~   45 (512)
                      .+||+|||+|.+|.|+|..|...|- .+||++|.+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            4799999999999999999999986 379999865

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.39  E-value=0.14  Score=39.74  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             hcCcEEEEcCChHH-HHHHHHHHhcCCCeEEEEeC
Q psy17422         11 ESARICLINATGLG-TEILKSLVLPGVGSFTIIDG   44 (512)
Q Consensus        11 ~~~~VlivG~g~lg-~ei~knLvl~Gv~~itiiD~   44 (512)
                      +.++|.++|.||+| +.+|+.|...|. .++--|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~   40 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDI   40 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEES
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeC
Confidence            45789999999999 667999999998 4665553

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.29  E-value=0.082  Score=47.17  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      -||+|||+|..|..+|..|.+.|.+ ++||+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999775 79999865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.27  E-value=0.057  Score=50.22  Aligned_cols=64  Identities=17%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhC-CCCeEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELN-PDCQGDF   86 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~ln-p~v~i~~   86 (512)
                      ||+++.++|.| .+|+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.. +..++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS-------------------SERLEETRQIILKSGVSEKQVNS   61 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCCceEE
Confidence            57888888887 67999999999999998 69998765                   245666777777654 2334555


Q ss_pred             EeCCCc
Q psy17422         87 VDENPQ   92 (512)
Q Consensus        87 ~~~~~~   92 (512)
                      +..++.
T Consensus        62 ~~~Dvs   67 (272)
T d1xkqa_          62 VVADVT   67 (272)
T ss_dssp             EECCTT
T ss_pred             EEccCC
Confidence            555554

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.25  E-value=0.075  Score=44.81  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=26.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +||+|||.|.+|+|+|..|.. |. ++|+++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CC-CEEEEecc
Confidence            689999999999999999976 43 89999754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.20  E-value=0.082  Score=47.69  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..||+|||+|..|..+|..|...|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999999 69999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.99  E-value=0.05  Score=50.71  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC-CCeEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP-DCQGDF   86 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp-~v~i~~   86 (512)
                      ||+.++++|-| .+|+|.++++.|+..|. ++.++|.+                   +.+.+.+++.+.+.+. ..++..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~~~~~~~~~~   60 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN-------------------EDRLEETKQQILKAGVPAEKINA   60 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCCCCcceEE
Confidence            46778888887 67999999999999998 58888754                   3466777888877653 345666


Q ss_pred             EeCCCc
Q psy17422         87 VDENPQ   92 (512)
Q Consensus        87 ~~~~~~   92 (512)
                      +..++.
T Consensus        61 ~~~Dv~   66 (274)
T d1xhla_          61 VVADVT   66 (274)
T ss_dssp             EECCTT
T ss_pred             EEeeCC
Confidence            666554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.94  E-value=0.096  Score=48.03  Aligned_cols=61  Identities=13%  Similarity=0.105  Sum_probs=45.5

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+++.++|.| .+|+|.++++.|+..|. ++.++|.+                   ..+++.+++.+++.+.  ++..+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~   65 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGY--ESSGYA   65 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            5677777777 67999999999999997 58888754                   3467778888877655  455555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .+++
T Consensus        66 ~Dvt   69 (251)
T d2c07a1          66 GDVS   69 (251)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            5554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.71  E-value=0.1  Score=47.13  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|||+|..|..+|..|...|+..++|+|..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            69999999999999999999999999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.65  E-value=0.076  Score=49.05  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=47.6

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC-CCeEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP-DCQGDF   86 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp-~v~i~~   86 (512)
                      ||+++.++|-| .+|+|.++++.|+..|. ++.+.|.+                   ..+.+.+++.|++... ..++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH-------------------AERLEETRQQILAAGVSEQNVNS   61 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCcCceEE
Confidence            57777777777 67999999999999998 58888755                   2466777888877653 335666


Q ss_pred             EeCCCc
Q psy17422         87 VDENPQ   92 (512)
Q Consensus        87 ~~~~~~   92 (512)
                      +..+++
T Consensus        62 ~~~Dvt   67 (264)
T d1spxa_          62 VVADVT   67 (264)
T ss_dssp             EECCTT
T ss_pred             EEccCC
Confidence            665554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.63  E-value=0.13  Score=41.16  Aligned_cols=55  Identities=11%  Similarity=-0.013  Sum_probs=38.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCC--eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVG--SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~--~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      .+|+|+|.|.+|+|+|-.|...|-+  ++|+++..    +.+-++       ....-++.+.+.+++.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~----~~iL~~-------~d~~~~~~l~~~l~~~   77 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG----EMILRG-------FDHTLREELTKQLTAN   77 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS----SSSSTT-------SCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc----chhhcc-------cchHHHHHHHHHHHhc
Confidence            5899999999999999887776653  69999863    112222       2334556677777775

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.52  E-value=0.11  Score=47.84  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +.+|+|||+|..|..+|..|...|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            3589999999999999999999999 69999865

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.89  E-value=0.14  Score=47.59  Aligned_cols=63  Identities=11%  Similarity=0.157  Sum_probs=45.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      +|+++.++|-| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++. ++..+
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~-------------------~~~l~~~~~~l~~~~g~-~~~~~   80 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRK-------------------MDVLKATAEQISSQTGN-KVHAI   80 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHHSS-CEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCC-ceEEE
Confidence            57788888887 78999999999999996 69998864                   24555666666655432 44444


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        81 ~~D~~   85 (294)
T d1w6ua_          81 QCDVR   85 (294)
T ss_dssp             ECCTT
T ss_pred             Eeccc
Confidence            44443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.16  Score=47.78  Aligned_cols=64  Identities=23%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC---CCeE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP---DCQG   84 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp---~v~i   84 (512)
                      +|+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+                   ..+.+.+++.|....+   ..++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~-------------------~~~l~~~~~el~~~~~~~~~~~~   68 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK-------------------LERLKSAADELQANLPPTKQARV   68 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTSCTTCCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhhccccCceE
Confidence            57888888887 67999999999999998 58888754                   3466667777765433   3456


Q ss_pred             EEEeCCCc
Q psy17422         85 DFVDENPQ   92 (512)
Q Consensus        85 ~~~~~~~~   92 (512)
                      ..+..+++
T Consensus        69 ~~~~~Dvs   76 (297)
T d1yxma1          69 IPIQCNIR   76 (297)
T ss_dssp             EEEECCTT
T ss_pred             EEEeccCC
Confidence            66655554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.72  E-value=0.1  Score=42.38  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++++|||+|-+|.|+|..|...|. ++|++...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~   57 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFA   57 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEEc
Confidence            589999999999999999999997 69998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.09  Score=48.37  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      +|+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+                   +.+++.+++.+++.+.  ++..+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~~~~~~~~l~~~g~--~~~~~   65 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN-------------------ADAANHVVDEIQQLGG--QAFAC   65 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCC--cEEEE
Confidence            35677777776 67999999999999998 58888754                   3467778888888765  44555


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..+++
T Consensus        66 ~~Dvs   70 (255)
T d1fmca_          66 RCDIT   70 (255)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            55554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.56  E-value=1.5  Score=36.51  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|.-++..+...|. ++.++|.+
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~   59 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARS   59 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc-cccccchH
Confidence            5689999999999999999999997 68888865

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.42  E-value=0.55  Score=35.74  Aligned_cols=30  Identities=13%  Similarity=0.186  Sum_probs=23.7

Q ss_pred             CcEEEEcCChHHH-HHHHHHHhcCCCeEEEEe
Q psy17422         13 ARICLINATGLGT-EILKSLVLPGVGSFTIID   43 (512)
Q Consensus        13 ~~VlivG~g~lg~-ei~knLvl~Gv~~itiiD   43 (512)
                      .||-++|.||+|- .+|+-|...|. .++=-|
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD   32 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSN   32 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEe
Confidence            5789999999994 77899999998 355444

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.29  E-value=0.18  Score=45.47  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=35.8

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +.|++.+|+++|+|+.|+-|++.|+..|.++|.++|.+
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            46889999999999999999999999999999999986

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.22  E-value=0.19  Score=42.99  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      +++|+|||.|.+|+|+|..|...|.. +++++.+.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            57899999999999999999999975 56665443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.02  E-value=0.21  Score=41.58  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .-+||.||| +|..|..+++||...|. .++++|.+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~   42 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   42 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccc
Confidence            346999999 89999999999999999 59998865

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.93  E-value=0.28  Score=44.79  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             CcEEEE-c-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         13 ARICLI-N-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        13 ~~Vliv-G-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      +||+|| | .+|+|.++++.|+..|. ++.+.|.+                   ..+++.+++.+++.+.  ++..+..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g~--~~~~~~~D   58 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAGG--HAVAVKVD   58 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            466444 5 67999999999999998 58888753                   3466777888887654  55555555


Q ss_pred             Cc
Q psy17422         91 PQ   92 (512)
Q Consensus        91 ~~   92 (512)
                      +.
T Consensus        59 v~   60 (255)
T d1gega_          59 VS   60 (255)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.79  E-value=0.18  Score=47.68  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++++|+|||+|..|.-+|..|+..|. +++|+|..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            47899999999999999999999997 79999865

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.72  E-value=0.26  Score=44.83  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ||+++.++|-| ++|+|.++++.|+..|. ++.+.|.+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            68898888887 67999999999999998 58888764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.66  E-value=0.4  Score=40.36  Aligned_cols=50  Identities=18%  Similarity=0.277  Sum_probs=40.0

Q ss_pred             cEEEE-cCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCe
Q psy17422         14 RICLI-NATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQ   83 (512)
Q Consensus        14 ~Vliv-G~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~   83 (512)
                      ||.|+ |+|++|..+++.|+..|. ++++.+.+                   ..|++.+++.+.+..+...
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~-------------------~e~~~~l~~~i~~~~~~~~   52 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR-------------------EEKAEAKAAEYRRIAGDAS   52 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS-------------------HHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCce
Confidence            68999 799999999999999998 48888665                   3577778888876655443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.63  E-value=0.19  Score=45.64  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      -|+|||+|.+|+.+|..|+..|. +++|+|.+.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~   38 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGTM   38 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            49999999999999999999996 7999998754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.24  Score=45.13  Aligned_cols=61  Identities=10%  Similarity=0.035  Sum_probs=44.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |..+.|+|-| .+|+|.++++.|+..|. ++.+.|.+                   +.|.+.+++.+.+.++  ++..+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   62 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDIN-------------------KHGLEETAAKCKGLGA--KVHTFV   62 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            4556666766 66899999999999998 58888754                   3467778888888766  445555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .+++
T Consensus        63 ~Dvs   66 (244)
T d1yb1a_          63 VDCS   66 (244)
T ss_dssp             CCTT
T ss_pred             eeCC
Confidence            5554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.49  E-value=0.2  Score=45.80  Aligned_cols=62  Identities=21%  Similarity=0.170  Sum_probs=42.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+++.++|-| .+|+|.++++.|+..|. ++.+.|.+                   ..+.+.+++.+.+... .++..+.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~g-~~~~~~~   61 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN-------------------LEEASEAAQKLTEKYG-VETMAFR   61 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHHC-CCEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHHhC-CcEEEEE
Confidence            5677888887 67999999999999998 59998764                   2344445555544332 3555555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        62 ~Dv~   65 (251)
T d1vl8a_          62 CDVS   65 (251)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            5554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.36  E-value=0.23  Score=42.02  Aligned_cols=34  Identities=12%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      +.+|+|||.|.+|+|+|..|...|.. ++++++..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            56899999999999999999999985 46666554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.29  E-value=0.65  Score=39.09  Aligned_cols=33  Identities=12%  Similarity=0.098  Sum_probs=22.8

Q ss_pred             CcEEEEcCChHHHH-HHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTE-ILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~e-i~knLvl~Gv~~itiiD~~   45 (512)
                      -||.|||+|..|.. .+..|...+--.+.++|.+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~   35 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRN   35 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence            37999999999976 5666665543345566543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.28  E-value=0.27  Score=40.93  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      .||.|||+|.+|+.++-.|+..|.. ++.|+|-+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            5899999999999999999999984 69999955

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.26  E-value=0.27  Score=44.90  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             CcEEEE-c-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         13 ARICLI-N-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        13 ~~Vliv-G-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      .||+|| | .+|+|.++++.|+..|. ++.+.|.+                   +.+.+.+++.|++.+.  ++..+..+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG-------------------EEGLRTTLKELREAGV--EADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            356555 5 77999999999999998 58888754                   3467777888887654  55556555


Q ss_pred             Cc
Q psy17422         91 PQ   92 (512)
Q Consensus        91 ~~   92 (512)
                      ++
T Consensus        60 vs   61 (257)
T d2rhca1          60 VR   61 (257)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=0.2  Score=43.99  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .||.|||+|..|+.+|-.++..|. .++++|.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   36 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            689999999999999999999998 59999976

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.05  E-value=0.2  Score=46.04  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=46.0

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+.                  ..+++.+++.+++.+.  ++..+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~--~~~~~~   63 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG--EAIAVK   63 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            7777777776 78999999999999998 588877541                  2356778888887765  555555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .+++
T Consensus        64 ~Dvt   67 (261)
T d1geea_          64 GDVT   67 (261)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            5554

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=1.1  Score=41.47  Aligned_cols=32  Identities=25%  Similarity=0.581  Sum_probs=26.9

Q ss_pred             cCcEEEEcCCh-HHHHHHHHHHhcCCCeEEEEeC
Q psy17422         12 SARICLINATG-LGTEILKSLVLPGVGSFTIIDG   44 (512)
Q Consensus        12 ~~~VlivG~g~-lg~ei~knLvl~Gv~~itiiD~   44 (512)
                      ++||||.|++| +|+.+++.|...|. +++.+|.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            47899998555 99999999999996 5888874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=87.95  E-value=0.2  Score=43.58  Aligned_cols=32  Identities=16%  Similarity=0.132  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|.|||+|.+|+.++-.+++.|+. ++++|.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECC
Confidence            5799999999999999999999985 9999976

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.80  E-value=0.86  Score=37.84  Aligned_cols=73  Identities=10%  Similarity=0.107  Sum_probs=46.4

Q ss_pred             cEEEEc-CChHHHHHHHHHHhc-C-CCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         14 RICLIN-ATGLGTEILKSLVLP-G-VGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        14 ~VlivG-~g~lg~ei~knLvl~-G-v~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      ||.|+| +|.+|+.++-.|+.. | +.++.++|.+                    ++++..+.-|...........+.. 
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~--------------------~~~~g~a~Dl~h~~~~~~~~~~~~-   60 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA--------------------PVTPGVAVDLSHIPTAVKIKGFSG-   60 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS--------------------TTHHHHHHHHHTSCSSCEEEEECS-
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc--------------------ccchhHHHHHHCCccccCCcEEEc-
Confidence            799999 599999999888753 5 4679998743                    112223345555444444443321 


Q ss_pred             CcccccCCcccccccceEEecC
Q psy17422         91 PQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                           ..+.+=+++.|+||.+.
T Consensus        61 -----~~~~~~~~~aDvvvita   77 (145)
T d2cmda1          61 -----EDATPALEGADVVLISA   77 (145)
T ss_dssp             -----SCCHHHHTTCSEEEECC
T ss_pred             -----CCCccccCCCCEEEECC
Confidence                 22344467899999984

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=87.78  E-value=0.2  Score=45.86  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ++|+|||+|..|..+|..|+..|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            489999999999999999999997 69999864

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.17  Score=46.35  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=44.6

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         12 SARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        12 ~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      .+.|+|-| .+|+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..+..++..+..+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D   62 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN-------------------LEAGVQCKAALHEQFEPQKTLFIQCD   62 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHTTTSCGGGEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            34556666 68999999999999997 58888754                   23556667777776666677776666


Q ss_pred             Cc
Q psy17422         91 PQ   92 (512)
Q Consensus        91 ~~   92 (512)
                      ++
T Consensus        63 v~   64 (254)
T d2gdza1          63 VA   64 (254)
T ss_dssp             TT
T ss_pred             cC
Confidence            65

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.64  E-value=0.09  Score=46.62  Aligned_cols=37  Identities=8%  Similarity=0.087  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +.|..++|.|+|.|.+|.+++|-|.-.|+ ++..+|..
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~   75 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIF   75 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcc-cccccCcc
Confidence            45899999999999999999999999998 47777643

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=87.56  E-value=0.34  Score=42.57  Aligned_cols=32  Identities=19%  Similarity=0.495  Sum_probs=27.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCe--EEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGS--FTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~--itiiD~~   45 (512)
                      ||.|||.||.|+.++.+|...|+..  +..+|.|
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD   35 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTD   35 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESC
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCC
Confidence            7899999999999999999999864  4555665

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.24  Score=44.99  Aligned_cols=33  Identities=15%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDG   44 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~   44 (512)
                      +.+||+|||+|-.|-..|..|...|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 6999985

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.36  E-value=0.31  Score=43.41  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeE--EEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSF--TIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~i--tiiD~~   45 (512)
                      .+++|.|||+||.|+.++..|...|+..+  ..+|.|
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD   50 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTD   50 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESB
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCC
Confidence            56899999999999999999999998644  455665

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.14  E-value=0.25  Score=46.55  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      ++|+|||+|..|..+|++|...|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            6899999999999999999998874 79999865

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=87.11  E-value=0.23  Score=44.49  Aligned_cols=31  Identities=10%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+|||+|..|...|..|+..|. +++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            69999999999999999999998 59999863

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.85  E-value=0.6  Score=41.07  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCe--EEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGS--FTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~--itiiD~~   45 (512)
                      .+.|.|+|.||.||.++..|...|+..  +..+|.|
T Consensus         1 ~a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD   36 (198)
T d1ofua1           1 TAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTD   36 (198)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESB
T ss_pred             CceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCc
Confidence            368999999999999999999999864  4555666

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=86.70  E-value=0.6  Score=42.56  Aligned_cols=61  Identities=11%  Similarity=0.093  Sum_probs=47.2

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+.++|+|.| .+|+|.++++.|+..|. ++.++|.+                   ..+++.+++.+++...  .+..+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   61 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN-------------------EKELDECLEIWREKGL--NVEGSV   61 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEEE
Confidence            6788899998 77999999999999998 69998764                   3566777888887665  444555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        62 ~D~s   65 (258)
T d1ae1a_          62 CDLL   65 (258)
T ss_dssp             CCTT
T ss_pred             eecC
Confidence            5554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.47  E-value=0.37  Score=41.39  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...|+|+|+||+|.-.+.-+...|.++|..+|.+
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            4569999999999999999999999999999876

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.44  E-value=0.62  Score=37.44  Aligned_cols=30  Identities=10%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +||+|+|.|.+|.++++.|...   .+.++|.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d   30 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAED   30 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcc
Confidence            5899999999999999998543   36777765

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=86.34  E-value=0.2  Score=45.67  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ||+.+.++|-| .+|+|.++++.|+..|. ++.++|.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~   39 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            68888888887 78999999999999998 48888754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.29  E-value=0.97  Score=40.85  Aligned_cols=60  Identities=17%  Similarity=0.301  Sum_probs=47.4

Q ss_pred             CcEEEE-c-CChHHHHHHHHHHh---cCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEE
Q psy17422         13 ARICLI-N-ATGLGTEILKSLVL---PGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFV   87 (512)
Q Consensus        13 ~~Vliv-G-~g~lg~ei~knLvl---~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~   87 (512)
                      .||+|| | .+|+|-++++.|+.   .|. ++.++|.+                   ..+.+.+++.|...++.+++..+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   65 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARS-------------------ESMLRQLKEELGAQQPDLKVVLA   65 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEE
Confidence            355555 6 57999999999996   465 58887654                   35778889999999999999988


Q ss_pred             eCCCc
Q psy17422         88 DENPQ   92 (512)
Q Consensus        88 ~~~~~   92 (512)
                      ..++.
T Consensus        66 ~~Dvs   70 (259)
T d1oaaa_          66 AADLG   70 (259)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            88876

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.08  E-value=0.34  Score=42.00  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|+.++|.|+|.|.+|.++++.|.-.|+ ++...|..
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~   74 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT   74 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccCceEEEeccccccccceeeeecccc-cccccccc
Confidence            3889999999999999999999999999 68888865

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=85.99  E-value=0.36  Score=43.88  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=28.4

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         15 ICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        15 VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      |+|||+|.+|+.+|..|+..|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999997 599998753

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.82  E-value=0.47  Score=40.20  Aligned_cols=71  Identities=13%  Similarity=0.041  Sum_probs=42.2

Q ss_pred             cEEEEcCChHHHHHHHHHH-----hcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCC-CCeEEEE
Q psy17422         14 RICLINATGLGTEILKSLV-----LPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNP-DCQGDFV   87 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLv-----l~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp-~v~i~~~   87 (512)
                      ||.|||+|++|...+-...     ...++++.|+|-+                   ..|+..+.+....+.. ..++...
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did-------------------~~k~~~~~d~~~~~~~~~~~~~~t   62 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID-------------------EEKQKIVVDFVKRLVKDRFKVLIS   62 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC-------------------HHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC-------------------cHHHHHHHHHHHhhhccCceEEEe
Confidence            7999999988765553322     2336789999855                   2344444444443322 2233221


Q ss_pred             eCCCcccccCCcccccccceEEec
Q psy17422         88 DENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                              ..+.+-+++.|+||.+
T Consensus        63 --------~~~~~~l~~aDvVVit   78 (162)
T d1up7a1          63 --------DTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             --------SSHHHHHTTCSEEEEC
T ss_pred             --------cCcccccCCCCEEEEe
Confidence                    2235667899999997

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.46  E-value=1.1  Score=36.25  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=18.9

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCC
Q psy17422         14 RICLINA-TGLGTEILKSLVLPGV   36 (512)
Q Consensus        14 ~VlivG~-g~lg~ei~knLvl~Gv   36 (512)
                      ||.|+|+ |-.|.++++.+...|.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC
Confidence            6999996 9999999887776654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.27  E-value=0.54  Score=42.37  Aligned_cols=59  Identities=14%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             CcEEEE-c-CChHHHHHHHHHHhcCCC------eEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeE
Q psy17422         13 ARICLI-N-ATGLGTEILKSLVLPGVG------SFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQG   84 (512)
Q Consensus        13 ~~Vliv-G-~g~lg~ei~knLvl~Gv~------~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i   84 (512)
                      ++|+|| | .+|+|.++++.|+..|.+      .+.+.|.+                   +.+.+.+++.+++.++  ++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~-------------------~~~l~~~~~~~~~~g~--~~   59 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT-------------------AADLEKISLECRAEGA--LT   59 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC-------------------HHHHHHHHHHHHTTTC--EE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC-------------------HHHHHHHHHHHHhcCC--cE
Confidence            455544 6 679999999999999986      24444432                   3466777777877654  55


Q ss_pred             EEEeCCCc
Q psy17422         85 DFVDENPQ   92 (512)
Q Consensus        85 ~~~~~~~~   92 (512)
                      ..+..+++
T Consensus        60 ~~~~~Dvt   67 (240)
T d2bd0a1          60 DTITADIS   67 (240)
T ss_dssp             EEEECCTT
T ss_pred             EEEEecCC
Confidence            55655554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.05  E-value=0.48  Score=40.49  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|.-.+.-+...|..++..+|.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            5679999999999999999999999999999876

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.96  E-value=0.4  Score=42.34  Aligned_cols=36  Identities=11%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|+.++|+|-|.|.+|..+++.|...|. ++++.|.+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecch
Confidence            3788999999999999999999999995 68888765

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.82  E-value=0.49  Score=37.43  Aligned_cols=32  Identities=9%  Similarity=-0.008  Sum_probs=26.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHhc---CCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLP---GVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~---Gv~~itiiD~~   45 (512)
                      .+|+|||.|.+|+|+|..|...   |. ++|+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~   53 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRG   53 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESS
T ss_pred             CeEEEECCChHHHHHHHHhHhhccccc-ccceeccc
Confidence            6899999999999999887754   54 69999764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.81  E-value=0.33  Score=42.68  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=28.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-----eEEEEeCCc
Q psy17422         14 RICLINATGLGTEILKSLVLPGVG-----SFTIIDGEK   46 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~-----~itiiD~~~   46 (512)
                      ||+|||+|.+|..+|..|...|..     ++++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            699999999999999999999975     677777653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.68  E-value=0.43  Score=41.20  Aligned_cols=32  Identities=9%  Similarity=0.149  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-eEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVG-SFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~-~itiiD~~   45 (512)
                      ||+|||+|.+|.|+|..|...|-+ +|++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            799999999999999999988664 69999754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.68  E-value=0.46  Score=39.90  Aligned_cols=32  Identities=9%  Similarity=0.085  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEe
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIID   43 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD   43 (512)
                      ..+|+|||.|-+|.+.|..+.+.|..+++++-
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~   76 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVF   76 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence            46899999999999999999999999999973

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=84.57  E-value=0.97  Score=40.95  Aligned_cols=62  Identities=21%  Similarity=0.342  Sum_probs=45.1

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+++.|+|-| ++|+|-++|+.|+..|..-+.+.+.+.                    + ......++..++..++..+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~--------------------~-~~~~~~~~~~~~~~~~~~~~   61 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--------------------N-PTALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--------------------C-HHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------------c-HHHHHHHHhhCCCCCEEEEE
Confidence            6778888887 669999999999999997555544330                    1 11245677888888888777


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        62 ~d~~   65 (254)
T d1sbya1          62 YDVT   65 (254)
T ss_dssp             CCTT
T ss_pred             eecC
Confidence            6664

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.42  E-value=0.49  Score=38.70  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHh----cCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhh
Q psy17422         12 SARICLINATGLGTEILKSLVL----PGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLEL   78 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl----~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~l   78 (512)
                      .++++|||.|.+|+|++-.|..    .|+ ++|+++...   .-+.+.       .++.-+..+.+.+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~---~~l~~~-------~~~~~~~~~~~~l~~~   96 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEK---GNMGKI-------LPEYLSNWTMEKVRRE   96 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSS---STTTTT-------SCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccc---cCCccc-------CCHHHHHHHHHHHHhC
Confidence            4579999999999999999964    576 699987641   112221       2334455566667654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.36  E-value=0.5  Score=40.36  Aligned_cols=33  Identities=9%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|++|.-.+.-+...|..++..+|.+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            469999999999999999999999999999876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.18  E-value=0.51  Score=40.37  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|..++.-+...|.++|+++|.+
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCEEEEECCCccchhheecccccccccccccccc
Confidence            4789999999999999999999999999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.68  E-value=0.5  Score=40.67  Aligned_cols=31  Identities=13%  Similarity=0.098  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -|+|||+|-.|.-+|..|+..|. +++|+|..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            48999999999999999999997 69999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.57  E-value=0.67  Score=41.74  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+.+.++|.| .+|+|.++++.|+..|. ++.+.+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDRE   38 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57888899987 66899999999999998 58888754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.44  E-value=0.79  Score=41.30  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=41.8

Q ss_pred             CcEEEE--cCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeCC
Q psy17422         13 ARICLI--NATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDEN   90 (512)
Q Consensus        13 ~~Vliv--G~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~~   90 (512)
                      +.|+||  |.+|+|.++++.|+..|. ++.+.|.+.                  ..+++.+++.+++.+.  ++..+..+
T Consensus         1 spV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~------------------~~~~~~~~~~~~~~g~--~~~~~~~D   59 (244)
T d1edoa_           1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARS------------------AKAAEEVSKQIEAYGG--QAITFGGD   59 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHHcCC--cEEEEeCC
Confidence            356666  588999999999999998 477766531                  2356777888887754  55556555


Q ss_pred             Cc
Q psy17422         91 PQ   92 (512)
Q Consensus        91 ~~   92 (512)
                      +.
T Consensus        60 v~   61 (244)
T d1edoa_          60 VS   61 (244)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.44  E-value=0.48  Score=39.37  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=26.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ||.|||+|-.|+.++++|...|. .+++.|.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCc
Confidence            69999999999999999999997 46665543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=83.38  E-value=0.45  Score=41.65  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|..++|.|||+|.+|.+++|-|...|++ +...|..
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   81 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPY   81 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccCc
Confidence            47889999999999999999999988885 7777764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.32  E-value=0.63  Score=39.79  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .+|+|+|+|++|.-.+.-+-..|.+.+.++|..
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            679999999999999999999999999998876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.29  E-value=0.46  Score=42.26  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         11 ESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...+|+|||+|..|...|..|+..|. +++|+|..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~   81 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTA   81 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeec
Confidence            45789999999999999999999998 59999854

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.12  E-value=0.82  Score=41.28  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      +|+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57888888887 67999999999999998 58888864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.04  E-value=1.6  Score=39.54  Aligned_cols=61  Identities=13%  Similarity=0.082  Sum_probs=44.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+                   +.+.+.+++.+.+.+.  ++..+.
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~--~~~~~~   63 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN-------------------QKELNDCLTQWRSKGF--KVEASV   63 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEEE
Confidence            6677788887 56999999999999998 58888754                   3456667777777654  555555


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .++.
T Consensus        64 ~Dv~   67 (259)
T d2ae2a_          64 CDLS   67 (259)
T ss_dssp             CCTT
T ss_pred             eeCC
Confidence            5554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=82.94  E-value=1.3  Score=37.77  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             cCcEEEEcCChHHHH--HHHHHHhc-C--CCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422         12 SARICLINATGLGTE--ILKSLVLP-G--VGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus        12 ~~~VlivG~g~lg~e--i~knLvl~-G--v~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      +-||.|||+|++|..  ++..|.+. +  .++|.|+|-+   +..+            +..+.-+.+.....+...++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did---~~~~------------~~~~~~~~~~~~~~~~~~~i~~   66 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID---EERL------------DAILTIAKKYVEEVGADLKFEK   66 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC---HHHH------------HHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCC---chHH------------HHHHHHHHHHHHhcCCCeEEEE
Confidence            458999999998864  45555543 2  3589999876   1111            1122233444555677777765


Q ss_pred             EeCCCcccccCCcccccccceEEec
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVIST  111 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~  111 (512)
                      ...        ..+-+++.|+||++
T Consensus        67 ~td--------~~eaL~dad~Vv~~   83 (171)
T d1obba1          67 TMN--------LDDVIIDADFVINT   83 (171)
T ss_dssp             ESC--------HHHHHTTCSEEEEC
T ss_pred             eCC--------hhhcccCCCeEeee
Confidence            433        23456788999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.93  E-value=0.65  Score=40.73  Aligned_cols=36  Identities=14%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422          9 ALESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus         9 ~L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|.+++|.|+|.|.+|.++++-|.--|+. +..+|..
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   77 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY   77 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCCc
Confidence            58889999999999999999999999985 7777764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.70  E-value=2.7  Score=35.44  Aligned_cols=22  Identities=14%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcC
Q psy17422         14 RICLINATGLGTEILKSLVLPG   35 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~G   35 (512)
                      ||.|||+|..|...++.|...+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~   24 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP   24 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC
Confidence            7999999999999999997763

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.63  E-value=0.86  Score=41.44  Aligned_cols=61  Identities=10%  Similarity=0.051  Sum_probs=45.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEe
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVD   88 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~   88 (512)
                      |+++.|+|-| .+|+|.++++.|+..|. ++.++|.+                   +.+.+.+++.+.+...  ++..+.
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   63 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN-------------------EYELNECLSKWQKKGF--QVTGSV   63 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEEe
Confidence            5677788887 77999999999999998 58888765                   3466677777777654  556666


Q ss_pred             CCCc
Q psy17422         89 ENPQ   92 (512)
Q Consensus        89 ~~~~   92 (512)
                      .+++
T Consensus        64 ~Dv~   67 (259)
T d1xq1a_          64 CDAS   67 (259)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            5554

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.24  E-value=0.55  Score=40.09  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHh---c--CCCeEEEEeCCccCcccCCCccccCcCccCChH----HHHHHHHHHhhCCC
Q psy17422         11 ESARICLINATGLGTEILKSLVL---P--GVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSR----AEVATQLLLELNPD   81 (512)
Q Consensus        11 ~~~~VlivG~g~lg~ei~knLvl---~--Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~k----a~~~~~~l~~lnp~   81 (512)
                      ++-||.|||+|++|...+-...+   .  .++++.|+|-+                   +.|    ++.+.......+..
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did-------------------~~~~~~~~~~~~~~~~~~~~~   62 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND-------------------KERQDRIAGACDVFIREKAPD   62 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC-------------------HHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC-------------------hhHHHHHHHHHHHHHHHhCCC
Confidence            35689999999887653322222   2  23689999866                   223    34444555566666


Q ss_pred             CeEEEEeCCCcccccCCcccccccceEEecC
Q psy17422         82 CQGDFVDENPQVLMANDPNFFQSFHMVISTN  112 (512)
Q Consensus        82 v~i~~~~~~~~~~~~~~~~~~~~~~~vi~~~  112 (512)
                      .++.....        ..+-+++.|+||.+.
T Consensus        63 ~~~~~~~d--------~~eal~~AD~Vvita   85 (167)
T d1u8xx1          63 IEFAATTD--------PEEAFTDVDFVMAHI   85 (167)
T ss_dssp             SEEEEESC--------HHHHHSSCSEEEECC
T ss_pred             cceEecCC--------hhhccCCCCEEEECC
Confidence            66665442        234567899999973

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=1.6  Score=39.71  Aligned_cols=60  Identities=18%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             cCcEEEE--cCChHHHHHHHHHHhcCCCeEEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEEEeC
Q psy17422         12 SARICLI--NATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDE   89 (512)
Q Consensus        12 ~~~Vliv--G~g~lg~ei~knLvl~Gv~~itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~~~~   89 (512)
                      .+||.||  |.+|+|-++++.|+..|-.++.+.+.+                   ..|++.+++.|++.++.+.  .+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~--~~~~   60 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSPR--FHQL   60 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCCE--EEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcEE--EEEE
Confidence            4789888  688999999999998754578887654                   3577888889988877654  4455


Q ss_pred             CCc
Q psy17422         90 NPQ   92 (512)
Q Consensus        90 ~~~   92 (512)
                      ++.
T Consensus        61 Dvs   63 (275)
T d1wmaa1          61 DID   63 (275)
T ss_dssp             CTT
T ss_pred             ecC
Confidence            554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=82.02  E-value=0.61  Score=41.33  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=28.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -|+|||+|..|...|..|+..|. +++|+|..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            48999999999999999999998 59999864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.93  E-value=0.83  Score=41.48  Aligned_cols=35  Identities=14%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLIN-ATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG-~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |+++.|+|-| .+|+|.++++.|+..|. ++.++|.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5677788887 67899999999999998 59998875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=0.54  Score=43.70  Aligned_cols=31  Identities=10%  Similarity=0.114  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      .|+|||+|..|+.+|..|+..|. +++|+|..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            58999999999999999999996 69999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.89  E-value=0.59  Score=40.16  Aligned_cols=34  Identities=9%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCc
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEK   46 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~   46 (512)
                      +.+|+|||.|..|.+.|-.|++.|.. .+++|...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            56899999999999999999999985 77887543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=81.86  E-value=0.71  Score=40.11  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=28.8

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         15 ICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        15 VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      |+|||+|..|.+.|..+++.|- +++|||.+.+
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~~   36 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAKEL   36 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESSCT
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEeccCc
Confidence            8999999999999999999997 5999987643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.86  E-value=0.79  Score=39.90  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|.-.+..+...|.+++.++|.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            3579999999999999999889999999999876

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.38  E-value=1.5  Score=36.38  Aligned_cols=77  Identities=9%  Similarity=0.067  Sum_probs=48.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCe------EEEEeCCccCcccCCCccccCcCccCChHHHHHHHHHHhhCCCCeEEE
Q psy17422         14 RICLINA-TGLGTEILKSLVLPGVGS------FTIIDGEKISEQDLGTNFFLDVDSIGKSRAEVATQLLLELNPDCQGDF   86 (512)
Q Consensus        14 ~VlivG~-g~lg~ei~knLvl~Gv~~------itiiD~~~v~~~nl~~~f~~~~~dvGk~ka~~~~~~l~~lnp~v~i~~   86 (512)
                      ||+|+|+ |.+|+.++-.|+..++-.      +.++|.+                 ....+++..+..+........-..
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~   68 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP-----------------QAMKALEGVVMELEDCAFPLLAGL   68 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG-----------------GGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccc-----------------cchhhHcCchhhhhcccccccccc
Confidence            8999997 999999999999888632      2222222                 223455666666665544322221


Q ss_pred             EeCCCcccccCCcccccccceEEecCC
Q psy17422         87 VDENPQVLMANDPNFFQSFHMVISTNC  113 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vi~~~~  113 (512)
                      ...      ..+.+-+++.|+||.+..
T Consensus        69 ~~~------~~~~~~~~~advViitaG   89 (154)
T d1y7ta1          69 EAT------DDPKVAFKDADYALLVGA   89 (154)
T ss_dssp             EEE------SCHHHHTTTCSEEEECCC
T ss_pred             ccC------CchhhhcccccEEEeecC
Confidence            111      233456789999999853

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.35  E-value=0.46  Score=44.45  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhc----------CCCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLP----------GVGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~----------Gv~~itiiD~~   45 (512)
                      +.|++.+|++.|+|+.|+-+++.|+..          |.++|.++|.+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~k   68 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK   68 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETT
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCC
Confidence            468999999999999999999999866          56799999974

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.33  E-value=0.8  Score=38.82  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ..+|+|+|+|++|.-++..+...|...+.++|.+
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            4579999999999999999999999999998765

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=81.12  E-value=3.5  Score=34.74  Aligned_cols=34  Identities=15%  Similarity=0.093  Sum_probs=22.6

Q ss_pred             hcCcEEEEcCChHHHH-HHHHHHhc-CCCeEE-EEeC
Q psy17422         11 ESARICLINATGLGTE-ILKSLVLP-GVGSFT-IIDG   44 (512)
Q Consensus        11 ~~~~VlivG~g~lg~e-i~knLvl~-Gv~~it-iiD~   44 (512)
                      ++-+|.|||+|..|.. .+..+... +.-+++ +.|.
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~   38 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSR   38 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECS
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence            4558999999999987 47777653 322344 4444

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.05  E-value=0.53  Score=43.95  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      ...|+|||+|..|..+|+.|...|+ +++|+|..
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~   39 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIETA   39 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEcC
Confidence            3469999999999999999999999 59999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.00  E-value=0.73  Score=39.99  Aligned_cols=31  Identities=16%  Similarity=0.101  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      =|+|||+|+.|.+.|..+++.|. ++++||..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            48999999999999999999997 59999863

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=80.98  E-value=0.38  Score=41.91  Aligned_cols=35  Identities=11%  Similarity=0.097  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         10 LESARICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        10 L~~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      |..+||+|+|+|..|+.++..|+..|- +++|++.+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~   39 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   39 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCC-eEEEEEec
Confidence            344689999999999999999999985 68888654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.90  E-value=0.78  Score=40.03  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHhcCCCeEEEEeCCcc
Q psy17422         12 SARICLINATGLGTEILKSLVLPGVGSFTIIDGEKI   47 (512)
Q Consensus        12 ~~~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~~v   47 (512)
                      +.-|+|||+|+.|.+.|..++..|. +++|||.+.+
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~~   39 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQAL   39 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            4679999999999999999999997 5999987644

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=1.3  Score=37.15  Aligned_cols=31  Identities=6%  Similarity=0.127  Sum_probs=27.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCeEEEEeCC
Q psy17422         14 RICLINATGLGTEILKSLVLPGVGSFTIIDGE   45 (512)
Q Consensus        14 ~VlivG~g~lg~ei~knLvl~Gv~~itiiD~~   45 (512)
                      -|+|||.|..|.+.|-.+++.|.+ ++|||.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEEe
Confidence            389999999999999999999985 8888853

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=80.08  E-value=0.45  Score=44.71  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHhcC----------CCeEEEEeCC
Q psy17422          8 AALESARICLINATGLGTEILKSLVLPG----------VGSFTIIDGE   45 (512)
Q Consensus         8 ~~L~~~~VlivG~g~lg~ei~knLvl~G----------v~~itiiD~~   45 (512)
                      ++|+..+|+++|+|+.|+-|++.|+..+          .++|.++|.+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            4688999999999999999999988763          3479999974

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.03  E-value=0.41  Score=42.05  Aligned_cols=33  Identities=9%  Similarity=0.010  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHhcCCC------eEEEEeCC
Q psy17422         13 ARICLINATGLGTEILKSLVLPGVG------SFTIIDGE   45 (512)
Q Consensus        13 ~~VlivG~g~lg~ei~knLvl~Gv~------~itiiD~~   45 (512)
                      .||+|||+|+.|-..|..|...|..      ++||+|..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            4899999999999999999999953      69999864