Psyllid ID: psy17477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MPELNPTSLWTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccccccccccccccHHEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEcccccccccEEEEccccccEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHccEEEEcccccccccccccHcEEEEEEcccEEEEEccccccccccccccccccHHHHHEEccc
Coil and Loop (DISEMBL)
mpelnptslwtnpvAAATFldledesgkcgmankddlisddiLRQGFLikrsqnkkrfstsnnnYKQRWFVLTTKHliyydtdseiflsgirlsdlpdqifhdilvpa
Flexible Loop (DISEMBL)
mpelnptslwtnpVAAATFLDLEDESGKCGmankddlisdDILRQGFLikrsqnkkrfstsnnnykqRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Low Complexity Region (SEG)
MPELNPTSLWTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Disordered region (IsUnstruct)
********LWTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKR**********NNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILV**
Disordered Region (DISOPRED)
****NPTSLWTNPVAAATFLD*********************LRQGFL***************NYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Disordered Region (DISEMBL)
MPELNPTSLWTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Disordered Region (DISPRO)
***LNPTSLWTNPVAAATFLDLEDE***********LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPELNPTSLWTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILVPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
P08630	786	Tyrosine-protein kinase B	yes	N/A	0.537	0.073	0.408	2e-07
Q14644	834	Ras GTPase-activating pro	yes	N/A	0.712	0.092	0.341	3e-06
Q60790	834	Ras GTPase-activating pro	yes	N/A	0.712	0.092	0.341	1e-05
Q9QYJ2	834	Ras GTPase-activating pro	yes	N/A	0.712	0.092	0.341	1e-05
Q28013	834	Ras GTPase-activating pro	yes	N/A	0.712	0.092	0.329	2e-05
P51813	675	Cytoplasmic tyrosine-prot	no	N/A	0.324	0.051	0.567	0.0008

>sp|P08630|BTKL_DROME Tyrosine-protein kinase Btk29A OS=Drosophila melanogaster GN=Btk29A PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 13/71 (18%)

Query: 34 KDDLISD---DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------ 84
          K DL+S+   D+++ G ++KR+QNKKRF+    NYK RWF LT +   Y+D ++      
Sbjct: 31 KMDLMSERLYDVVKSGSMVKRAQNKKRFTPV--NYKHRWFELTKRTFSYFDVENVERRRE 88

Query: 85 --EIFLSGIRL 93
             I L G+RL
Sbjct: 89 RGRIHLKGVRL 99

Required for proper ring canal development. Also required for the development of male genitalia and for adult survival.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 2

>sp|Q14644|RASA3_HUMAN Ras GTPase-activating protein 3 OS=Homo sapiens GN=RASA3 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 15  AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
           A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF     N+K+RWF LT 
Sbjct: 553 AVKNFLDLISSSGRRDPKSVEQPI---VLKEGFMIKRAQGRKRFGM--KNFKKRWFRLTN 607

Query: 75  KHLIYYDTDSEIFLSGIRLSDL 96
               Y+ +  +  L  I + ++
Sbjct: 608 HEFTYHKSKGDQPLYSIPIENI 629

Inhibitory regulator of the Ras-cyclic AMP pathway. Binds inositol tetrakisphosphate (IP4) with high affinity. Might be a specific IP4 receptor.

Homo sapiens (taxid: 9606)

>sp|Q60790|RASA3_MOUSE Ras GTPase-activating protein 3 OS=Mus musculus GN=Rasa3 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 15  AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
           A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF     N+K+RWF LT 
Sbjct: 553 AVKNFLDLISSSGRRDPKSIEQPI---LLKEGFMIKRAQGRKRFGM--KNFKKRWFRLTN 607

Query: 75  KHLIYYDTDSEIFLSGIRLSDL 96
               Y  +  +  L  I + ++
Sbjct: 608 HEFTYQKSKGDQPLCNIPIENI 629

Inhibitory regulator of the Ras-cyclic AMP pathway. May bind inositol tetrakisphosphate (IP4).

Mus musculus (taxid: 10090)

>sp|Q9QYJ2|RASA3_RAT Ras GTPase-activating protein 3 OS=Rattus norvegicus GN=Rasa3 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 15  AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
           A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF     N+K+RWF LT 
Sbjct: 553 AVKNFLDLISSSGRRDPKSIEQPI---LLKEGFMIKRAQGRKRFGM--KNFKKRWFRLTN 607

Query: 75  KHLIYYDTDSEIFLSGIRLSDL 96
               Y  +  +  L  I + ++
Sbjct: 608 HEFTYQKSKGDQPLCNIPIENI 629

Inhibitory regulator of the Ras-cyclic AMP pathway. Binds inositol tetrakisphosphate (IP4).

Rattus norvegicus (taxid: 10116)

>sp|Q28013|RASA3_BOVIN Ras GTPase-activating protein 3 OS=Bos taurus GN=RASA3 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 15  AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
           A   FLDL   SG+    +   +    +L++GF+IKR+Q +KRF     N+K+RWF LT 
Sbjct: 553 AVKNFLDLISSSGR---RDPKSVQQPILLKEGFMIKRAQGRKRFGM--KNFKKRWFRLTN 607

Query: 75  KHLIYYDTDSEIFLSGIRLSDL 96
               Y  +  +  L  I + ++
Sbjct: 608 HEFTYQKSKGDPPLYSIPIENI 629

Inhibitory regulator of the Ras-cyclic AMP pathway. May bind inositol tetrakisphosphate (IP4).

Bos taurus (taxid: 9913)

>sp|P51813|BMX_HUMAN Cytoplasmic tyrosine-protein kinase BMX OS=Homo sapiens GN=BMX PE=1 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 2/37 (5%)

Query: 47 FLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD 83
           L+KRSQ KK+ S   NNYK+R FVLT  +L YY+ D
Sbjct: 10 LLLKRSQQKKKMSP--NNYKERLFVLTKTNLSYYEYD 44

Non-receptor tyrosine kinase that plays central but diverse modulatory roles in various signaling processes involved in the regulation of actin reorganization, cell migration, cell proliferation and survival, cell adhesion, and apoptosis. Participates in signal transduction stimulated by growth factor receptors, cytokine receptors, G-protein coupled receptors, antigen receptors and integrins. Induces tyrosine phosphorylation of BCAR1 in response to integrin regulation. Activation of BMX by integrins is mediated by PTK2/FAK1, a key mediator of integrin signaling events leading to the regulation of actin cytoskeleton and cell motility. Plays a critical role in TNF-induced angiogenesis, and implicated in the signaling of TEK and FLT1 receptors, 2 important receptor families essential for angiogenesis. Required for the phosphorylation and activation of STAT3, a transcription factor involved in cell differentiation. Also involved in interleukin-6 (IL6) induced differentiation. Plays also a role in programming adaptive cytoprotection against extracellular stress in different cell systems, salivary epithelial cells, brain endothelial cells, and dermal fibroblasts. May be involved in regulation of endocytosis through its interaction with an endosomal protein RUFY1. May also play a role in the growth and differentiation of hematopoietic cells; as well as in signal transduction in endocardial and arterial endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
380028436	722	PREDICTED: tyrosine-protein kinase Btk29	0.5	0.074	0.610	7e-13
328780764	694	PREDICTED: tyrosine-protein kinase Btk29	0.5	0.077	0.610	7e-13
350423617	248	PREDICTED: tyrosine-protein kinase Btk29	0.5	0.217	0.610	1e-12
340727645	691	PREDICTED: tyrosine-protein kinase Btk29	0.5	0.078	0.610	2e-12
383849754	711	PREDICTED: tyrosine-protein kinase Btk29	0.490	0.074	0.603	4e-12
328721408	678	PREDICTED: tyrosine-protein kinase Btk29	0.620	0.098	0.554	4e-12
345487249	711	PREDICTED: tyrosine-protein kinase Btk29	0.490	0.074	0.603	4e-12
328721410	658	PREDICTED: tyrosine-protein kinase Btk29	0.490	0.080	0.636	8e-12
307183121	424	Tyrosine-protein kinase Btk29A [Camponot	0.490	0.125	0.620	9e-12
307206151	454	Tyrosine-protein kinase Btk29A [Harpegna	0.490	0.116	0.603	1e-11

>gi|380028436|ref|XP_003697908.1| PREDICTED: tyrosine-protein kinase Btk29A-like [Apis florea]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 5/59 (8%)

Query: 30 GMANKDDLI---SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          GMA KD  +   S D++RQGF++KRSQNKKRF+    NYKQRWFVLT ++L+YYD D E
Sbjct: 7  GMAGKDGKVEPKSGDVVRQGFMVKRSQNKKRFTPV--NYKQRWFVLTRRYLVYYDGDGE 63

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780764|ref|XP_394126.4| PREDICTED: tyrosine-protein kinase Btk29A-like [Apis mellifera]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 5/59 (8%)

Query: 30 GMANKDDLI---SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          GMA KD  +   S D++RQGF++KRSQNKKRF+    NYKQRWFVLT ++L+YYD D E
Sbjct: 7  GMAGKDGKVEPKSGDVVRQGFMVKRSQNKKRFTPV--NYKQRWFVLTRRYLVYYDGDGE 63

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423617|ref|XP_003493537.1| PREDICTED: tyrosine-protein kinase Btk29A-like, partial [Bombus impatiens]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 5/59 (8%)

Query: 30 GMANKDDLI---SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          GMA KD      S D++RQGF++KRSQNKKRF+    NYKQRWFVLT ++L+YYD D E
Sbjct: 7  GMAGKDGKAEPKSGDVVRQGFMVKRSQNKKRFTPV--NYKQRWFVLTRRYLVYYDGDGE 63

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727645|ref|XP_003402150.1| PREDICTED: tyrosine-protein kinase Btk29A-like [Bombus terrestris]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 5/59 (8%)

Query: 30 GMANKD---DLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          GMA KD   +  S D++RQGF++KRSQNKKRF+    NYKQRWFVLT ++L+YYD D E
Sbjct: 7  GMAGKDGKAEPKSGDVVRQGFMVKRSQNKKRFTPV--NYKQRWFVLTRRYLVYYDGDGE 63

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849754|ref|XP_003700502.1| PREDICTED: tyrosine-protein kinase Btk29A-like [Megachile rotundata]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 5/58 (8%)

Query: 31 MANKDDLI---SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          MA KD  +   S D++RQGF++KRSQNKKRF+  N  YKQRWFVLT ++L+YYD D E
Sbjct: 23 MAGKDGKVEPKSGDVVRQGFMVKRSQNKKRFTPVN--YKQRWFVLTRRYLVYYDGDGE 78

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721408|ref|XP_003247295.1| PREDICTED: tyrosine-protein kinase Btk29A-like isoform 2 [Acyrthosiphon pisum]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 7/74 (9%)

Query: 31  MANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
           MA KDDL   DI++QG ++KRSQNKKRF     NYKQRWFVLTTK+ IYY++++E     
Sbjct: 2   MAGKDDLDDCDIIKQGLMVKRSQNKKRFMPI--NYKQRWFVLTTKNFIYYESETEEI--- 56

Query: 91  IRLSDLPDQIFHDI 104
           I  S LP    H+I
Sbjct: 57  IERSSLP--CLHNI 68

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487249|ref|XP_003425657.1| PREDICTED: tyrosine-protein kinase Btk29A-like isoform 2 [Nasonia vitripennis]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 5/58 (8%)

Query: 31 MANKDDLIS---DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          MA KD  +    +DI+RQGF++KRSQNKKRF+  N  YKQRWFVLT +HL+YYD + E
Sbjct: 1  MAGKDGKLEPQENDIVRQGFMVKRSQNKKRFTPVN--YKQRWFVLTRQHLVYYDGNGE 56

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721410|ref|XP_001945897.2| PREDICTED: tyrosine-protein kinase Btk29A-like isoform 1 [Acyrthosiphon pisum]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 2/55 (3%)

Query: 31 MANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          MA KDDL   DI++QG ++KRSQNKKRF     NYKQRWFVLTTK+ IYY++++E
Sbjct: 2  MAGKDDLDDCDIIKQGLMVKRSQNKKRFMPI--NYKQRWFVLTTKNFIYYESETE 54

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183121|gb|EFN70038.1| Tyrosine-protein kinase Btk29A [Camponotus floridanus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 5/58 (8%)

Query: 31 MANKDDLISD---DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          MA KD  +     D++RQGF+IKRSQNKKRF+  N  YKQRWFVLT  +LIYYD D E
Sbjct: 1  MAGKDGKLESKGGDVIRQGFMIKRSQNKKRFTPVN--YKQRWFVLTKHYLIYYDGDGE 56

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206151|gb|EFN84231.1| Tyrosine-protein kinase Btk29A [Harpegnathos saltator]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 5/58 (8%)

Query: 31 MANKDDLISD---DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          MA KD  +     D++RQGF+IKRSQNKKRF+  N  YKQRWFVLT ++L+YYD D E
Sbjct: 1  MAGKDGKLESKDGDVIRQGFMIKRSQNKKRFTPVN--YKQRWFVLTKRYLVYYDGDGE 56

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0003502	786	Btk29A "Btk family kinase at 2	0.537	0.073	0.408	1.6e-06
UNIPROTKB|F8W6X8	802	RASA3 "cDNA FLJ58396" [Homo sa	0.712	0.096	0.341	4.4e-06
UNIPROTKB|Q14644	834	RASA3 "Ras GTPase-activating p	0.712	0.092	0.341	4.7e-06
UNIPROTKB|E2QUY1	834	RASA3 "Uncharacterized protein	0.712	0.092	0.341	7.6e-06
ZFIN|ZDB-GENE-090313-21	833	rasa3 "RAS p21 protein activat	0.712	0.092	0.341	9.8e-06
MGI|MGI:1197013	834	Rasa3 "RAS p21 protein activat	0.712	0.092	0.341	1.2e-05
RGD|69365	834	Rasa3 "RAS p21 protein activat	0.712	0.092	0.341	1.2e-05
UNIPROTKB|F1LSI5	834	Rasa3 "Ras GTPase-activating p	0.712	0.092	0.341	1.2e-05
UNIPROTKB|F1P4A4	835	RASA3 "Uncharacterized protein	0.712	0.092	0.341	1.3e-05
UNIPROTKB|A5D7I7	834	RASA3 "Ras GTPase-activating p	0.712	0.092	0.341	2e-05

FB|FBgn0003502 Btk29A "Btk family kinase at 29A" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query:    34 KDDLISD---DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------ 84
             K DL+S+   D+++ G ++KR+QNKKRF+  N  YK RWF LT +   Y+D ++      
Sbjct:    31 KMDLMSERLYDVVKSGSMVKRAQNKKRFTPVN--YKHRWFELTKRTFSYFDVENVERRRE 88

Query:    85 --EIFLSGIRL 93
                I L G+RL
Sbjct:    89 RGRIHLKGVRL 99

GO:0004713 "protein tyrosine kinase activity" evidence=ISS;NAS;IDA

GO:0006468 "protein phosphorylation" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007301 "female germline ring canal formation" evidence=IEP;IMP

GO:0008258 "head involution" evidence=IMP

GO:0045172 "germline ring canal" evidence=IDA;TAS

GO:0007485 "imaginal disc-derived male genitalia development" evidence=IMP;IDA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0007619 "courtship behavior" evidence=NAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0007254 "JNK cascade" evidence=TAS

GO:0007349 "cellularization" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0048477 "oogenesis" evidence=IMP

GO:0030723 "ovarian fusome organization" evidence=IMP

GO:0030717 "karyosome formation" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0007300 "ovarian nurse cell to oocyte transport" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0046960 "sensitization" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|F8W6X8 RASA3 "cDNA FLJ58396" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   521 AVKNFLDLISSSGRRDPKSVEQPI---VLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 575

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y+ +  +  L  I + ++
Sbjct:   576 HEFTYHKSKGDQPLYSIPIENI 597

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|Q14644 RASA3 "Ras GTPase-activating protein 3" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   553 AVKNFLDLISSSGRRDPKSVEQPI---VLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 607

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y+ +  +  L  I + ++
Sbjct:   608 HEFTYHKSKGDQPLYSIPIENI 629

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0005096 "GTPase activator activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IDA

GO:0015278 "calcium-release channel activity" evidence=IDA

UNIPROTKB|E2QUY1 RASA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   553 AVKNFLDLISSSGRRDPKSIEQPI---LLKEGFMIKRAQGRKRFGMKN--FKKRWFCLTN 607

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y  +  +  L  I + ++
Sbjct:   608 HEFTYQKSKGDQPLCSIPIENI 629

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-090313-21 rasa3 "RAS p21 protein activator 3" [Danio rerio (taxid:7955)]

 Score = 115 (45.5 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   S +    + +  I   +L++GF+IKR+Q + RF   N  +K+RWF LT 
Sbjct:   552 AVKNFLDLISSSARWDQKSIETPI---MLKEGFMIKRAQGRNRFGLKN--FKKRWFRLTN 606

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y+ T  E  L  I + ++
Sbjct:   607 HEFTYHKTKGEGALCSIPIENI 628

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

MGI|MGI:1197013 Rasa3 "RAS p21 protein activator 3" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   553 AVKNFLDLISSSGRRDPKSIEQPI---LLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 607

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y  +  +  L  I + ++
Sbjct:   608 HEFTYQKSKGDQPLCNIPIENI 629

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0007165 "signal transduction" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=ISO

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISO;IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

RGD|69365 Rasa3 "RAS p21 protein activator 3" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   553 AVKNFLDLISSSGRRDPKSIEQPI---LLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 607

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y  +  +  L  I + ++
Sbjct:   608 HEFTYQKSKGDQPLCNIPIENI 629

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0015278 "calcium-release channel activity" evidence=ISO

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISO;IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LSI5 Rasa3 "Ras GTPase-activating protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   553 AVKNFLDLISSSGRRDPKSIEQPI---LLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 607

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y  +  +  L  I + ++
Sbjct:   608 HEFTYQKSKGDQPLCNIPIENI 629

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1P4A4 RASA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    + +  I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   552 AVKNFLDLISSSGRRDHKSIEQPI---LLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 606

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y  +  +  L  I + ++
Sbjct:   607 HEFTYQKSKGDHPLCSIPIENI 628

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

UNIPROTKB|A5D7I7 RASA3 "Ras GTPase-activating protein 3" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query:    15 AAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
             A   FLDL   SG+    +    I   +L++GF+IKR+Q +KRF   N  +K+RWF LT 
Sbjct:   553 AVKNFLDLISSSGRRDPKSVQQPI---LLKEGFMIKRAQGRKRFGMKN--FKKRWFRLTN 607

Query:    75 KHLIYYDTDSEIFLSGIRLSDL 96
                 Y  +  +  L  I + ++
Sbjct:   608 HEFTYQKSKGDPPLYSIPIENI 629

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	3e-17
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	1e-08
cd13371	125	cd13371, PH_GAP1_mammal-like, GAP1(IP4BP) pleckstr	7e-08
cd01244	107	cd01244, PH_GAP1-like, RAS p21 protein activator (	1e-07
pfam00169	101	pfam00169, PH, PH domain	2e-07
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-07
cd13277	111	cd13277, PH_Bem3, Bud emergence protein 3 (Bem3) P	2e-06
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	3e-06
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	1e-05
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	4e-05
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	7e-05
cd13370	133	cd13370, PH_GAP1m_mammal-like, GTPase activating p	1e-04
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	1e-04
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	2e-04
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	2e-04
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	2e-04
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	3e-04
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	4e-04
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	4e-04
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	0.001
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	0.001
cd13261	136	cd13261, PH_RasGRF1_2, Ras-specific guanine nucleo	0.002
cd13380	106	cd13380, PH_Skap1, Src kinase-associated phosphopr	0.002
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	0.003
cd13266	106	cd13266, PH_Skap_family, Src kinase-associated pho	0.003

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 71.5 bits (176), Expect = 3e-17
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 10/57 (17%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE--------IFLSGIR 92
          ++G L+KRSQ KKRF   N  YK+RWFVLT   L YY+ D          I LS I+
Sbjct: 1  KEGLLVKRSQGKKRFGPVN--YKERWFVLTKSSLSYYEGDGGKRGKEKGSIDLSKIK 55

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 9/62 (14%)

Query: 37 LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL 96
          +IS+ +L+ G+L K+ + +K        +K+RWFVL    L YY  D E  L  +RL DL
Sbjct: 1  MISEAVLKAGYLEKKGERRKT-------WKKRWFVLRPTKLAYYKNDKEYRL--LRLIDL 51

Query: 97 PD 98
           D
Sbjct: 52 TD 53

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241522 cd13371, PH_GAP1_mammal-like, GAP1(IP4BP) pleckstrin homology (PH) domain

 Score = 46.6 bits (110), Expect = 7e-08
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL 96
          +L++GF+IKR+Q +KRF     N+K+RWF LT     Y+ +  +  L  I + ++
Sbjct: 16 LLKEGFMIKRAQGRKRFGM--KNFKKRWFRLTNHEFTYHKSKGDHPLCSIPIENI 68

GAP1 (also called IP4BP, RASA3/Ras GTPase-activating protein 3, and RAS p21 protein activator (GTPase activating protein) 3/GAPIII/MGC46517/MGC47588)) is a member of the GAP1 family of GTPase-activating proteins, along with RASAL1, GAP1(m), and CAPRI. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. GAP1(IP4BP) contains two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Its C2 domains, like those of GAP1M, do not contain the C2 motif that is known to be required for calcium-dependent phospholipid binding. GAP1(IP4BP) is regulated by the binding of its PH domains to phophoinositides, PIP3 (phosphatidylinositol 3,4,5-trisphosphate) and PIP2 (phosphatidylinositol 4,5-bisphosphate). It suppresses RAS, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. GAP1(IP4BP) binds tyrosine-protein kinase, HCK. Members here include humans, chickens, frogs, and fish. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241277 cd01244, PH_GAP1-like, RAS p21 protein activator (GTPase activating protein) family pleckstrin homology (PH) domain

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 44 RQGFLIKRSQN-KKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD 95
          ++G+LIKR+Q  K +    N  +K+R+F LT + L Y  +     L  I L D
Sbjct: 1  KEGYLIKRAQGRKGKLGRKN--FKKRYFRLTNEALSYSKSKGSQPLCSIPLQD 51

RASAL1, GAP1(m), GAP1(IP4BP), and CAPRI are all members of the GAP1 family of GTPase-activating proteins. They contain N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. They act as a suppressor of RAS enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 14/66 (21%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE--------IFLSGIRL 93
          ++++G+L+K+    ++      ++K+R+FVL    L+YY    +        I LSG ++
Sbjct: 1  VIKEGWLLKKGSGGRK------SWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLSGCQV 54

Query: 94 SDLPDQ 99
          + +PD 
Sbjct: 55 TKVPDS 60

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 15/71 (21%)

Query: 42  ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE---------IFLSGIR 92
           ++++G+L K+S   K+      ++K+R+FVL    L+YY +  +         I LSG  
Sbjct: 1   VIKEGWLYKKSGGGKK------SWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCT 54

Query: 93  LSDLPDQIFHD 103
           + + PD     
Sbjct: 55  VREAPDPDSSK 65

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241431 cd13277, PH_Bem3, Bud emergence protein 3 (Bem3) Pleckstrin homology (PH) domain

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 40  DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL------ 93
            D +++G+L+KR   +K+   S   +K R+ VL    L  Y++     L  I+L      
Sbjct: 1   GDSVKEGYLLKR---RKKTLGSTGGWKLRYGVLDGNILELYESRGGQLLESIKLRNAQIE 57

Query: 94  --SDLPDQIFH 102
              +LPD  + 
Sbjct: 58  RQPNLPDDKYG 68

Bud emergence in Saccharomyces cerevisiae involves cell cycle-regulated reorganizations of cortical cytoskeletal elements and requires the action of the Rho-type GTPase Cdc42. Bem3 contains a RhoGAP domain and a PH domain. Though Bem3 and Bem2 both contain a RhoGAP, but only Bem3 is able to stimulate the hydrolysis of GTP on Cdc42. Bem3 is thought to be the GAP for Cdc42. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          + L+ G+L K+       S    N+K RWFVL    L YY+ D E
Sbjct: 6  EALKSGWLYKKGGGSSTLS--RKNWKSRWFVLRDTVLKYYENDQE 48

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 36 DLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
          D +  D++++G+L K+             +++RWFVL    L YY
Sbjct: 2  DELILDVIKKGYLWKKGHLLP-------TWRERWFVLKPNSLSYY 39

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 9/43 (20%)

Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVL-TTKH-LIYYDTDSE 85
          +G+L KR    K        +KQRWFVL  TKH L YY++  +
Sbjct: 6  EGYLYKRGALLK-------GWKQRWFVLDLTKHQLRYYESKED 41

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 15/64 (23%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYD--TDSE----IFLSG--IRLSD 95
          ++G+L K+ +          +Y++RWFVL    L Y++   D E    I L G  + LS+
Sbjct: 10 KEGYLWKKGERNT-------SYQKRWFVLKGNLLFYFEKKGDREPLGVIVLEGCTVELSE 62

Query: 96 LPDQ 99
            + 
Sbjct: 63 DEEP 66

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241521 cd13370, PH_GAP1m_mammal-like, GTPase activating protein 1 m pleckstrin homology (PH) domain

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
           L++G + KR+Q + R      N+K+RWF LT++ L Y+
Sbjct: 16 HLKEGEMHKRAQGRTRIG--KKNFKKRWFCLTSRELTYH 52

GAP1(m) (also called RASA2/RAS p21 protein activator (GTPase activating protein) 2) is a member of the GAP1 family of GTPase-activating proteins, along with RASAL1, GAP1(IP4BP), and CAPRI. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. GAP1(m) contains two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Its C2 domains, like those of GAP1IP4BP, do not contain the C2 motif that is known to be required for calcium-dependent phospholipid binding. GAP1(m) is regulated by the binding of its PH domains to phophoinositides, PIP3 (phosphatidylinositol 3,4,5-trisphosphate). It suppresses RAS, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. GAP1(m) binds inositol tetrakisphosphate (IP4). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 133

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          D +L+ G+L+KRS+  K        +K+RWFVL    L YY  + E
Sbjct: 4  DRVLKSGWLLKRSRKTK-------TWKKRWFVLRPCQLSYYKDEKE 42

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
          +L++GFL+K+           NN+K RWFVL    L YY
Sbjct: 3  VLKEGFLVKKG-------HVVNNWKARWFVLLEDKLEYY 34

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 44  RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQI 100
           ++G+L KR     +      ++K+RWFVL    L+YY +  +       L  L D +
Sbjct: 1   KEGWLKKRGGKGLK------SWKKRWFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGL 51

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDT 82
          ++G+L K+    K       N+K RWFVL    L Y+ T
Sbjct: 5  KEGYLTKQGGIVK-------NWKTRWFVLRKNELKYFKT 36

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 13/61 (21%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYD--TDSE----IFLSGIRLSDLP 97
          R+G+L+K     K       ++K+RWF+LT   L Y++  TD E    I L  + + ++ 
Sbjct: 5  REGWLLKLGGRVK-------SWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSVREVE 57

Query: 98 D 98
          D
Sbjct: 58 D 58

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 15/67 (22%)

Query: 44  RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE---------IFLSGIRLS 94
           ++G+L KRS      S +   +K+RWF +    L+Y     +         + L  ++  
Sbjct: 1   KEGYLFKRS------SNAFKTWKRRWFSIQNGQLVYQKRFKKDTPTVVVEDLRLCTVKPC 54

Query: 95  DLPDQIF 101
           +  D+ F
Sbjct: 55  EDIDRRF 61

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 13/62 (20%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLSD 95
          +L+ G+L K+    K       N++QRWFVL    L YY  + E      I L G ++++
Sbjct: 3  VLKAGWLKKQRSIMK-------NWQQRWFVLRGDQLFYYKDEEETKPQGCISLQGSQVNE 55

Query: 96 LP 97
          LP
Sbjct: 56 LP 57

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
          +  ++  G+L K+  +  +      N+K+RWFVL    L YY    E    G
Sbjct: 4  NAPVVFSGWLHKQGGSGLK------NWKKRWFVLKDNCLYYYKDPEEEKALG 49

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLS 94
           +++ G+L K+    K       N+++RWFVL    L YY  + E      I L G  + 
Sbjct: 2  KVIKSGWLKKQGGIVK-------NWQRRWFVLRGDQLYYYKDEDESKPQGCIPLPGNTVK 54

Query: 95 DLPD 98
          +LP 
Sbjct: 55 ELPF 58

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241415 cd13261, PH_RasGRF1_2, Ras-specific guanine nucleotide-releasing factors 1 and 2 Pleckstrin homology (PH) domain

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL 93
          R+G+L K+S       + N+ +  +WF L    L Y++ +S    SG+ L
Sbjct: 7  RRGYLSKKS-------SDNSKWHTKWFALYQNLLFYFENESSSRPSGLYL 49

RasGRF1 (also called GRF1; CDC25Mm/Ras-specific nucleotide exchange factor CDC25; GNRP/Guanine nucleotide-releasing protein) and RasGRF2 (also called GRF2; Ras guanine nucleotide exchange factor 2) are a family of guanine nucleotide exchange factors (GEFs). They both promote the exchange of Ras-bound GDP by GTP, thereby regulating the RAS signaling pathway. RasGRF1 and RasGRF2 form homooligomers and heterooligomers. GRF1 has 3 isoforms and GRF2 has 2 isoforms. The longest isoforms of RasGRF1 and RasGRF2 contain the following domains: a Rho-GEF domain sandwiched between 2 PH domains, IQ domains, a REM (Ras exchanger motif) domain, and a Ras-GEF domainwhich gives them the capacity to activate both Ras and Rac GTPases in response to signals from a variety of neurotransmitter receptors. Their IQ domains allow them to act as calcium sensors to mediate the actions of NMDA-type and calcium-permeable AMPA-type glutamate receptors. GRF1 also mediates the action of dopamine receptors that signal through cAMP. GRF1 and GRF2 play strikingly different roles in regulating MAP kinase family members, neuronal synaptic plasticity, specific forms of learning and memory, and behavioral responses to psychoactive drugs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 136

>gnl|CDD|241531 cd13380, PH_Skap1, Src kinase-associated phosphoprotein 1 Pleckstrin homology (PH) domain

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
          I +QG+L KRS++   F +    +++RW VLTT+   YY
Sbjct: 1  IFKQGYLEKRSKDHGFFGSE---WQKRWCVLTTRAFYYY 36

Adaptor protein Skap1 (also called Skap55/Src kinase-associated phosphoprotein of 55 kDa) and its partner, ADAP (adhesion and degranulation promoting adapter protein) help reorganize the cytoskeleton and/or promote integrin-mediated adhesion upon immunoreceptor activation. Skap1 is also involved in T Cell Receptor (TCR)-induced RapL-Rap1 complex formation and LFA-1 activation. Skap1 has an N-terminal coiled-coil conformation which is proposed to be involved in homodimer formation, a central PH domain and a C-terminal SH3 domain that associates with ADAP. The Skap1 PH domain plays a role in controlling integrin function via recruitment of ADAP-SKAP complexes to integrins as well as in controlling the ability of ADAP to interact with the CBM signalosome and regulate NF-kappaB. SKAP1 is necessary for RapL binding to membranes in a PH domain-dependent manner and the PI3K pathway. Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Skap55/Skap1, Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-------IFLSGI 91
           D  + G+L K+  + K        +++RWFVL    L Y+  +         I LS  
Sbjct: 5  SDPEKAGWLTKQGGSIK-------TWRRRWFVLKQGKLFYFKDEDPDSEPRGVIDLSDC 56

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241420 cd13266, PH_Skap_family, Src kinase-associated phosphoprotein family Pleckstrin homology (PH) domain

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD 83
          +L+QG+L KR ++   F    + +++RW VL+     YY ++
Sbjct: 1  VLKQGYLEKRRKDHSFFG---SEWQKRWCVLSNTAFYYYGSE 39

Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Src kinase-associated phosphoprotein of 55 kDa (Skap55)/Src kinase-associated phosphoprotein 1 (Skap1), Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.65
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.35
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.34
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.28
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.22
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.21
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.11
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.05
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.05
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.02
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.0
KOG2059|consensus	800		99.0
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	98.99
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	98.98
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	98.95
cd05134	310	RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of	98.93
cd05394	313	RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the	98.92
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	98.88
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	98.79
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	98.78
KOG0930|consensus	395		98.72
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	98.69
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	98.67
cd05128	315	RasGAP_GAP1_like The GAP1 family of Ras GTPase-act	98.63
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.45
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	98.44
PF15409	89	PH_8: Pleckstrin homology domain	98.44
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	98.27
cd05135	333	RasGAP_RASAL Ras GTPase activating-like protein (R	98.18
KOG1090|consensus	1732		98.13
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	97.96
cd05395	337	RasGAP_RASA4 Ras GTPase activating-like 4 protein	97.89
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	97.88
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	97.88
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	97.84
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	97.63
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	97.18
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	97.06
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.04
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	96.73
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	96.03
KOG0690|consensus	516		95.87
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	95.52
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	95.13
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	94.53
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	93.84
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	93.61
KOG3751|consensus	622		93.53
KOG0248|consensus	936		92.37
KOG1739|consensus	611		92.2
KOG1737|consensus	799		91.97
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	91.41
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	91.12
PLN02866	1068	phospholipase D	90.87
KOG3640|consensus	1116		89.51
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	86.47
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	80.82
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	80.36

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.65  E-value=1.6e-16  Score=109.27  Aligned_cols=53  Identities=40%  Similarity=0.473  Sum_probs=46.8

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc-cccceEEecCC
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI-FLSGIRLSDLP   97 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek-~~~kG~I~~l~   97 (108)
                      ||+|+|+||+++++++++  +|||+|||||++..|+||+++.+. ..++|+|++-.
T Consensus         1 ~k~g~l~Kr~~~~~~~~~--~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~   54 (106)
T cd01238           1 ILESILVKRSQQKKKTSP--LNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSK   54 (106)
T ss_pred             CcceeeeeeccCCCCCCC--CCceeEEEEEcCCEEEEECCCcccccCcceeEECCc
Confidence            689999999999999999  999999999999999999988763 34589987654

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.35  E-value=1.1e-12  Score=89.81  Aligned_cols=45  Identities=24%  Similarity=0.623  Sum_probs=38.1

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      |+|||.|+|+...      ++||+|||||+++.|.||+++.+.. .+|.|++
T Consensus         1 KeG~L~K~g~~~~------k~wkkRwFvL~~~~L~Yyk~~~d~~-~~G~I~L   45 (103)
T cd01251           1 KEGFMEKTGPKHT------EGFKKRWFTLDDRRLMYFKDPLDAF-AKGEVFL   45 (103)
T ss_pred             CceeEEecCCCCC------CCceeEEEEEeCCEEEEECCCCCcC-cCcEEEe
Confidence            6899999998632      5999999999999999999987653 4888865

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.34  E-value=1.9e-12  Score=87.80  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=40.0

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      .|+|+|||.|+|+..       ++||+|||||++..|.||+++++.. +.|.|++-
T Consensus         1 ~v~k~G~L~Kkg~~~-------k~WkkRwfvL~~~~L~yyk~~~~~~-~~~~I~L~   48 (100)
T cd01233           1 VVSKKGYLNFPEETN-------SGWTRRFVVVRRPYLHIYRSDKDPV-ERGVINLS   48 (100)
T ss_pred             CcceeEEEEeeCCCC-------CCcEEEEEEEECCEEEEEccCCCcc-EeeEEEec
Confidence            478999999999876       5999999999999999999987653 36666643

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.28  E-value=4.9e-12  Score=86.91  Aligned_cols=46  Identities=22%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      .|.|+||+++.++++.   |||+|||||+.+.|+||+.+..+  .+|+|++
T Consensus         4 ~~~~~kr~~~~~~~~~---n~KkRwF~Lt~~~L~Y~k~~~~~--~~g~I~L   49 (98)
T cd01244           4 NLQQVDRSRLAWKKVL---HFKKRYFQLTTTHLSWAKDVQCK--KSALIKL   49 (98)
T ss_pred             ccEEEEcccCCCccCc---CCceeEEEECCCEEEEECCCCCc--eeeeEEc
Confidence            4788999999888777   99999999999999999987643  3676554

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.22  E-value=1.8e-11  Score=81.19  Aligned_cols=45  Identities=31%  Similarity=0.524  Sum_probs=36.8

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCC--CceeeeecCCcccccceEEecCC
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTT--KHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~--~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      +|||.|+|...       ++||+|||||++  ..|.||+++.+.. ++|.|++-.
T Consensus         2 ~G~L~K~g~~~-------k~WkkRwFvL~~~~~~L~Yy~~~~~~~-~~g~I~L~~   48 (101)
T cd01235           2 EGYLYKRGALL-------KGWKPRWFVLDPDKHQLRYYDDFEDTA-EKGCIDLAE   48 (101)
T ss_pred             eEEEEEcCCCC-------CCccceEEEEECCCCEEEEecCCCCCc-cceEEEcce
Confidence            79999999766       599999999995  4899999886553 478887653

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.21  E-value=2.3e-11  Score=81.89  Aligned_cols=46  Identities=26%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc-ccceEEecCC
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF-LSGIRLSDLP   97 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~-~~kG~I~~l~   97 (108)
                      +|||.|++...       ++||+|||||++..|+||+++.+.. .++|.|++-.
T Consensus         2 ~G~L~K~~~~~-------k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~   48 (91)
T cd01247           2 NGVLSKWTNYI-------NGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKK   48 (91)
T ss_pred             ceEEEEecccc-------CCCceEEEEEECCEEEEEecCccCcCCCcEEEECcc
Confidence            79999999887       5999999999999999999987542 3579887653

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.11  E-value=1.2e-10  Score=81.31  Aligned_cols=45  Identities=27%  Similarity=0.558  Sum_probs=37.1

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      |+|||.|+|...       ++||+|||||+.+.|.||+++.+.. ++|.|++-
T Consensus         2 k~G~L~K~~~~~-------~~WkkRwfvL~~~~L~yyk~~~~~~-~~g~I~L~   46 (125)
T cd01252           2 REGWLLKQGGRV-------KTWKRRWFILTDNCLYYFEYTTDKE-PRGIIPLE   46 (125)
T ss_pred             cEEEEEEeCCCC-------CCeEeEEEEEECCEEEEEcCCCCCC-ceEEEECC
Confidence            789999999776       5999999999999999999876553 36666543

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.05  E-value=2.8e-10  Score=77.98  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=37.9

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCCCc-------eeeeecCCcccccceEEecCC
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKH-------LIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~-------LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      +|||.|+|...+ +++  ++||+|||||++..       |.||+++.+.. .+|.|++-.
T Consensus         2 eGwL~K~~~~~~-~~~--~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k-~~g~I~L~~   57 (108)
T cd01266           2 EGWLKKSPPYKL-LFR--TKWVRRYFVLHCGDRERNLFALEYYKTSRKFK-LEFVIDLES   57 (108)
T ss_pred             ceeeeeCCcccc-ccc--cCcEEEEEEEeccccCCCcceEEEECCCCCCc-cceEEECCc
Confidence            799999987543 344  69999999999877       49999876543 478887654

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.05  E-value=2.4e-10  Score=79.26  Aligned_cols=48  Identities=19%  Similarity=0.314  Sum_probs=35.9

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      .+|+|.|+|...+ + .  ++|++|||+|+.+.|+||+...+.+...|.|++
T Consensus         2 ~~G~l~k~~g~~r-~-~--K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL   49 (101)
T cd01264           2 IEGQLKEKKGRWR-F-I--KRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDL   49 (101)
T ss_pred             cceEEeecCccce-e-e--ecceeEEEEEeCCEEEEEeccCccCCCCceEEc
Confidence            4899999987311 1 1  599999999999999999987644333466654

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.02  E-value=4.1e-10  Score=75.87  Aligned_cols=46  Identities=26%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             eeeeEeecCC-ccccccCCCCceeEEEEeC--CCceeeeecCCcccccceEEecCC
Q psy17477         45 QGFLIKRSQN-KKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        45 eG~L~Krg~~-~k~~~~~~~nwK~RwFVLt--~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      .|||+|+|.. ..      ++||+|||||+  ...|.||+++.+.. +.|.|++-.
T Consensus         2 ~GyL~K~g~~~~~------K~WkkRWFvL~~~~~~L~Yyk~~~d~~-p~G~I~L~~   50 (95)
T cd01265           2 CGYLHKIEGKGPL------RGRRSRWFALDDRTCYLYYYKDSQDAK-PLGRVDLSG   50 (95)
T ss_pred             cccEEEecCCCCC------cCceeEEEEEcCCCcEEEEECCCCccc-ccceEECCc
Confidence            6999999863 21      69999999997  45799999987654 478887653

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.00  E-value=6e-10  Score=75.95  Aligned_cols=36  Identities=25%  Similarity=0.623  Sum_probs=31.3

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeC-CCceeeeecCC
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDS   84 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt-~~~LsYYk~~~   84 (108)
                      ++|+|||.|+|...       ++||+|||||+ ...|.||+...
T Consensus         1 v~k~G~L~K~g~~~-------~~Wk~R~f~L~~~~~l~~yk~~~   37 (102)
T cd01241           1 VVKEGWLHKRGEYI-------KTWRPRYFLLKSDGSFIGYKEKP   37 (102)
T ss_pred             CcEEEEEEeecCCC-------CCCeeEEEEEeCCCeEEEEecCC
Confidence            57999999999877       59999999999 67899888654

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=99.00  E-value=3.2e-10  Score=99.76  Aligned_cols=86  Identities=28%  Similarity=0.455  Sum_probs=70.3

Q ss_pred             cchhhHHHHHHhhhccCCCCCCCCCCCcccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccc
Q psy17477         11 TNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG   90 (108)
Q Consensus        11 ~~~~~v~~fl~~i~~~~~~~~~~~~~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~k   90 (108)
                      +-+++++.||+.|++.+......++   .+.++|+|.|.||.++++++++  +|||+|||.||.++|+|.|+++...  +
T Consensus       537 ~~~~~~~~fld~is~~~~~~~~~p~---~p~v~k~glm~kr~~gr~~~~~--~~FKKryf~LT~~~Ls~~Ksp~~q~--~  609 (800)
T KOG2059|consen  537 QHFIAVKVFLDEISSVGDRSSLSPQ---EPVVLKEGLMIKRAQGRGRFGK--KNFKKRYFRLTTEELSYAKSPGKQP--I  609 (800)
T ss_pred             HhHHHHHhhhhcccccccccccCCC---CCceecccceEeccccccchhh--hhhhheEEEeccceeEEecCCccCc--c
Confidence            3467889999999877776543344   7999999999999999999999  9999999999999999999987543  4


Q ss_pred             eE--------EecCCCCcccc
Q psy17477         91 IR--------LSDLPDQIFHD  103 (108)
Q Consensus        91 G~--------I~~l~d~~f~~  103 (108)
                      +.        ++-|.|++|+.
T Consensus       610 ~~Ipl~nI~avEklee~sF~~  630 (800)
T KOG2059|consen  610 YTIPLSNIRAVEKLEEKSFKM  630 (800)
T ss_pred             cceeHHHHHHHHHhhhhccCC
Confidence            54        45577777764

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=98.99  E-value=7e-10  Score=76.59  Aligned_cols=44  Identities=25%  Similarity=0.504  Sum_probs=34.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCC------ceeeeecCCc---c-cccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK------HLIYYDTDSE---I-FLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~------~LsYYk~~~e---k-~~~kG~I~~   95 (108)
                      +|+++|||.|++           +||+|||||+..      .|.||+++++   . ...+|.|++
T Consensus         1 ~v~k~GyL~K~K-----------~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L   54 (101)
T cd01257           1 DVRKSGYLRKQK-----------SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPL   54 (101)
T ss_pred             CccEEEEEeEec-----------CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEc
Confidence            578999999972           999999999976      6999999763   1 223666654

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=98.98  E-value=7.2e-10  Score=77.01  Aligned_cols=49  Identities=18%  Similarity=0.361  Sum_probs=35.0

Q ss_pred             eeeeeEeecCCcc----ccccCCCCceeEEEEeCC-CceeeeecCC-cccccceEEec
Q psy17477         44 RQGFLIKRSQNKK----RFSTSNNNYKQRWFVLTT-KHLIYYDTDS-EIFLSGIRLSD   95 (108)
Q Consensus        44 keG~L~Krg~~~k----~~~~~~~nwK~RwFVLt~-~~LsYYk~~~-ek~~~kG~I~~   95 (108)
                      +.|||.|.+.+..    ....  ++||+|||||+. ..|.||+... +. ..+|.|++
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~--K~WkrRWFvL~~~~~L~y~~d~~~~~-~p~G~IdL   55 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRS--KRWQRRWFILYDHGLLTYALDEMPTT-LPQGTIDM   55 (104)
T ss_pred             CcceeEEcCCCCcccccceee--ccccceEEEEeCCCEEEEeeCCCCCc-ccceEEEc
Confidence            5799999998864    2456  899999999985 5566665442 32 23788776

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=98.95  E-value=1.8e-09  Score=71.63  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      .+|+|.|++...+. ..  ++|++|||||+++.|.||+++.+.. .+|.|++-.
T Consensus         2 ~~GwL~kk~~~~g~-~~--k~WkkrwfvL~~~~L~yyk~~~~~~-~~~~I~L~~   51 (96)
T cd01260           2 CDGWLWKRKKPGGF-MG--QKWARRWFVLKGTTLYWYRSKQDEK-AEGLIFLSG   51 (96)
T ss_pred             ceeEEEEecCCCCc-cc--cCceeEEEEEECCEEEEECCCCCCc-cceEEEccC
Confidence            48999999754322 22  5999999999999999999987553 377776554

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4)

Probab=98.93  E-value=2.1e-10  Score=92.74  Aligned_cols=69  Identities=36%  Similarity=0.581  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCc-chhhHHHHHHhhhccCCCCCCCCCCCcccceeeeeeeEeecCCccccccCCCCceeEEEEeCC
Q psy17477          1 MPELNPTSLWT-NPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT   74 (108)
Q Consensus         1 ~~~~~~~~~~~-~~~~v~~fl~~i~~~~~~~~~~~~~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~   74 (108)
                      |-++||.-.-+ ...+|++||+.|++.+.......+   .+.++|+|+|+||+++++++++  +|||+|||+||.
T Consensus       241 M~~~~~f~~~~~~~~~~~~FL~~is~~~~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~--~~~k~r~~~lt~  310 (310)
T cd05134         241 MAAFYDYFNEQKYADAVKNFLDLISSSGRRDHKSIE---QPILLKEGFMIKRAQGRKRFGM--KNFKKRWFRLTN  310 (310)
T ss_pred             HHhhCHHHHhhhhHHHHHHHHHHHhCCCCCCccccC---CcchhhhhhHHHhcccCCcccc--cchhheeeecCC
Confidence            44567765444 467899999999977665433333   6889999999999999999999  999999999984

Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.

>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL

Probab=98.92  E-value=1.1e-10  Score=94.68  Aligned_cols=67  Identities=25%  Similarity=0.371  Sum_probs=53.1

Q ss_pred             CCCCCCCCcc-hhhHHHHHHhhhccCCCCCCCCCCCcccceeeeeeeEeecCCccccccCCCCceeEEEEeCC
Q psy17477          3 ELNPTSLWTN-PVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT   74 (108)
Q Consensus         3 ~~~~~~~~~~-~~~v~~fl~~i~~~~~~~~~~~~~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~   74 (108)
                      ++||.-.-++ ..+|++||+.|++.....++...   .+.++|||+|+||++|++++|+  +|||+|||+||.
T Consensus       246 ~~~~~~~~~~~~~~v~~FLd~Is~~~~~~~~~~~---~~~~~~e~~~~~r~~~~~~~~~--~~~kkr~~~l~~  313 (313)
T cd05394         246 EFFKMFQEETYTKVVKKFLDEISSTETKEPSGVS---EPVHLKEGEMYKRAQGRTRIGK--KNFKKRWFCLTS  313 (313)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC---CchhhHHHHHHhhccCCCcccc--ccchhheeecCC
Confidence            4555422223 35799999999977766554444   6888999999999999999999  999999999984

In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=98.88  E-value=2.9e-09  Score=74.88  Aligned_cols=55  Identities=27%  Similarity=0.457  Sum_probs=42.7

Q ss_pred             eeeeeEeecCCcccccc-----------CCCCceeEEEEeCCCceeeeecCCcccccceEEecCCCCcc
Q psy17477         44 RQGFLIKRSQNKKRFST-----------SNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF  101 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~-----------~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~d~~f  101 (108)
                      ||||+.||+.++.....           ...+|++|||||++..|.||+++.+.. .+|.|..  |..|
T Consensus         1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~-~~~vil~--D~~f   66 (121)
T cd01254           1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQ-ILDVILF--DVDF   66 (121)
T ss_pred             CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCc-eeeEEEE--cCCc
Confidence            69999999988765443           112799999999999999999987743 3777776  5555

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=98.79  E-value=4.2e-09  Score=72.61  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=34.5

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCC----CceeeeecCCcccccceEEe
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT----KHLIYYDTDSEIFLSGIRLS   94 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~----~~LsYYk~~~ek~~~kG~I~   94 (108)
                      +.|||+|+|....      ++||+|||+|+.    ..|+||+...+.. .+|.|+
T Consensus         1 ~~G~l~K~g~~~~------K~wK~rwF~l~~~~s~~~l~yf~~~~~~~-p~gli~   48 (98)
T cd01245           1 KKGNLLKRTKSVT------KLWKTLYFALILDGSRSHESLLSSPKKTK-PIGLID   48 (98)
T ss_pred             CCCccccCCCCcc------cccceeEEEEecCCCCceEEEEcCCCCCC-ccceee
Confidence            4699999997622      699999999986    9999999887654 256433

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=98.78  E-value=1.9e-08  Score=64.01  Aligned_cols=47  Identities=26%  Similarity=0.562  Sum_probs=37.2

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc--ccccceEEec
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE--IFLSGIRLSD   95 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e--k~~~kG~I~~   95 (108)
                      ++++|+|.+++...       ..|++|||||++..|.||+.+.+  .....+.|.+
T Consensus         1 ~~~~G~L~~~~~~~-------~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l   49 (104)
T PF00169_consen    1 CIKEGWLLKKSSSR-------KKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPL   49 (104)
T ss_dssp             EEEEEEEEEEESSS-------SSEEEEEEEEETTEEEEESSTTTTTESSESEEEEG
T ss_pred             CEEEEEEEEECCCC-------CCeEEEEEEEECCEEEEEecCccccceeeeEEEEe
Confidence            57999999999554       59999999999999999999873  2223555544

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>KOG0930|consensus

Probab=98.72  E-value=2e-08  Score=81.78  Aligned_cols=45  Identities=29%  Similarity=0.598  Sum_probs=38.8

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      +||||.|.|+++-      ++||+|||+||.+.|.||+.-.++. .+|.|.+
T Consensus       262 REGWLlKlgg~rv------ktWKrRWFiLtdNCLYYFe~tTDKE-PrGIIpL  306 (395)
T KOG0930|consen  262 REGWLLKLGGNRV------KTWKRRWFILTDNCLYYFEYTTDKE-PRGIIPL  306 (395)
T ss_pred             ccceeeeecCCcc------cchhheeEEeecceeeeeeeccCCC-CCcceec
Confidence            7999999998754      7999999999999999999887775 4788764

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=98.69  E-value=3.7e-08  Score=63.25  Aligned_cols=46  Identities=26%  Similarity=0.467  Sum_probs=35.6

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc-ccceEEecC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF-LSGIRLSDL   96 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~-~~kG~I~~l   96 (108)
                      .+|||.|++...       ..|++|||||+...|.||+.+.+.. ...|.|.+-
T Consensus         1 ~~G~L~k~~~~~-------~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~   47 (91)
T cd01246           1 VEGWLLKWTNYL-------KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLS   47 (91)
T ss_pred             CeEEEEEecccC-------CCceeeEEEEECCEEEEEecCccCCCCceEEEEec
Confidence            489999998765       5999999999999999999886431 235655543

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=98.67  E-value=4.6e-08  Score=63.15  Aligned_cols=36  Identities=39%  Similarity=0.786  Sum_probs=30.6

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ++|||.|++.+..      ..|++|||||+...|.||+...+
T Consensus         1 k~G~L~kk~~~~~------~~W~kr~~~L~~~~l~~y~~~~~   36 (94)
T cd01250           1 KQGYLYKRSSKSN------KEWKKRWFVLKNGQLTYHHRLKD   36 (94)
T ss_pred             CcceEEEECCCcC------CCceEEEEEEeCCeEEEEcCCcc
Confidence            5899999886522      59999999999999999998764

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1

Probab=98.63  E-value=9.4e-09  Score=83.08  Aligned_cols=61  Identities=30%  Similarity=0.511  Sum_probs=49.4

Q ss_pred             cchhhHHHHHHhhhccCCCCCCCC--CCCcccceeeeeeeEeecCCccccccCCCCceeEEEEeC
Q psy17477         11 TNPVAAATFLDLEDESGKCGMANK--DDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT   73 (108)
Q Consensus        11 ~~~~~v~~fl~~i~~~~~~~~~~~--~~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt   73 (108)
                      ++..+|+.||+.+++..+.....+  .....+.++|||+|.||.+|++++++  +|||+|||+||
T Consensus       253 ~~~~~~~~fL~~is~v~~~ee~~~~~~~~~~~~~~k~g~~~~~~~~~~~~~~--~~~k~r~~~lt  315 (315)
T cd05128         253 QYVSAVKDFLDRISSTEEREESLPARSSFLEPVVLKEGFMIKRAQGRGRLGR--KNFKKRYFRLT  315 (315)
T ss_pred             HHHHHHHHHHHHHcCCCChhhccccccCCCCchhhhhhhhHhhcccCCCccc--cchhheeeecC
Confidence            467889999999998887742111  11227899999999999999999999  99999999997

The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.45  E-value=2.5e-07  Score=65.03  Aligned_cols=48  Identities=29%  Similarity=0.472  Sum_probs=36.7

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      +|+.|||.-...+.-+     .--|+||||||.+.|+||+...++.+ ||.|++
T Consensus         1 virkgwl~~~n~~~m~-----ggsK~~WFVLt~~~L~wykd~eeKE~-kyilpL   48 (110)
T cd01256           1 VIRKGWLSISNVGIMK-----GGSKDYWFVLTSESLSWYKDDEEKEK-KYMLPL   48 (110)
T ss_pred             CeeeeeEEeeccceec-----CCCcceEEEEecceeeeecccccccc-cceeec
Confidence            5789999886655432     24589999999999999998877653 677655

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=98.44  E-value=2.5e-07  Score=64.22  Aligned_cols=34  Identities=32%  Similarity=0.737  Sum_probs=25.3

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeC-CCceeeeecC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTD   83 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt-~~~LsYYk~~   83 (108)
                      ++|+|.|.+....      +.||+|||+|. ..-|+|||.+
T Consensus         1 k~G~l~K~~~~~~------kgWk~RwFiL~k~~~L~YyK~~   35 (112)
T PF15413_consen    1 KEGYLYKWGNKFG------KGWKKRWFILRKDGVLSYYKIP   35 (112)
T ss_dssp             EEEEEEE--TTS-------S--EEEEEEEE-TTEEEEESS-
T ss_pred             CCceEEEecCCCC------cCccccEEEEEeCCEEEEeecc
Confidence            6899999887622      59999999999 9999999993

>PF15409 PH_8: Pleckstrin homology domain

Probab=98.44  E-value=2.9e-07  Score=62.77  Aligned_cols=44  Identities=23%  Similarity=0.420  Sum_probs=35.5

Q ss_pred             eeeEeecCCccccccCCCCceeEEEEe--CCCceeeeecCCcccccceEEecC
Q psy17477         46 GFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        46 G~L~Krg~~~k~~~~~~~nwK~RwFVL--t~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      |+|.|+.+.+-      +-|.+|||||  ....|+||.++.+. .+.|+|++-
T Consensus         1 G~llKkrr~~l------qG~~kRyFvL~~~~G~LsYy~~~~~~-~~rGsi~v~   46 (89)
T PF15409_consen    1 GWLLKKRRKPL------QGWHKRYFVLDFEKGTLSYYRNQNSG-KLRGSIDVS   46 (89)
T ss_pred             CcceeeccccC------CCceeEEEEEEcCCcEEEEEecCCCC-eeEeEEEcc
Confidence            78899765553      7999999999  89999999988665 457887654

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=98.27  E-value=1.5e-06  Score=62.00  Aligned_cols=47  Identities=15%  Similarity=0.243  Sum_probs=34.0

Q ss_pred             eeeeeEe-e-cCCccccccCCCCceeEEEEeCCCceeeeecCCcc--cccceEEecCC
Q psy17477         44 RQGFLIK-R-SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI--FLSGIRLSDLP   97 (108)
Q Consensus        44 keG~L~K-r-g~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek--~~~kG~I~~l~   97 (108)
                      ..|||.- + .++.       ++|++|||||++..|.||+.+.+.  ..+.|.|++-.
T Consensus         3 ~~GfL~~~q~~~~~-------k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~   53 (122)
T cd01263           3 YHGFLTMFEDTSGF-------GAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLST   53 (122)
T ss_pred             cceeEEEEeccCCC-------CCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhh
Confidence            4688874 3 3333       699999999999999999987742  12357776543

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras

Probab=98.18  E-value=2.9e-07  Score=75.08  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=48.2

Q ss_pred             CCCCCCCCcchhhHHHHHHhhhccCCCCCC-CCCC--CcccceeeeeeeEeecCCccc-cccCCCCceeEEEEeC
Q psy17477          3 ELNPTSLWTNPVAAATFLDLEDESGKCGMA-NKDD--LISDDILRQGFLIKRSQNKKR-FSTSNNNYKQRWFVLT   73 (108)
Q Consensus         3 ~~~~~~~~~~~~~v~~fl~~i~~~~~~~~~-~~~~--~~~~~vlkeG~L~Krg~~~k~-~~~~~~nwK~RwFVLt   73 (108)
                      +|||. .-++..+|+.||+.+.+...+..+ .+..  ...+.++|||+|+||.++.+. .++  .+||+|||+||
T Consensus       262 pln~F-i~~~~~~v~~FL~~l~~V~~~~~~~~~~~~~~~~~~~~~eg~~~~r~~~~~~~~~~--~~fkk~~f~l~  333 (333)
T cd05135         262 PLHPF-IRQSVARVRDFLDRLIDIDHDIVSGLPQRALFLPSVTVKEGYLHKRKTEGPQLLTR--FAFKKRYFWLS  333 (333)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHcCCCcccccCCccccccCCCchhhhhHhhhccccCCCCccc--ccccceeeecC
Confidence            45554 236778999999999987766322 1211  225888999999999986553 345  57999999996

It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.

>KOG1090|consensus

Probab=98.13  E-value=9e-07  Score=81.28  Aligned_cols=57  Identities=25%  Similarity=0.401  Sum_probs=47.1

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeC--CCceeeeecCCcccccceEEecCCCCcccc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSEIFLSGIRLSDLPDQIFHD  103 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt--~~~LsYYk~~~ek~~~kG~I~~l~d~~f~~  103 (108)
                      ..+-+.+|+|.|||...       +-||.|||||.  ++.|.||++..+.+ +||+|++..=++|.-
T Consensus      1631 teNr~~eG~LyKrGA~l-------K~Wk~RwFVLd~~khqlrYYd~~edt~-pkG~IdLaevesv~~ 1689 (1732)
T KOG1090|consen 1631 TENRIPEGYLYKRGAKL-------KLWKPRWFVLDPDKHQLRYYDDFEDTK-PKGCIDLAEVESVAL 1689 (1732)
T ss_pred             ccccCcccchhhcchhh-------cccccceeEecCCccceeeeccccccc-ccchhhhhhhhhhcc
Confidence            56667799999999888       59999999996  49999999887553 599999987666643

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=97.96  E-value=6.5e-06  Score=57.89  Aligned_cols=28  Identities=25%  Similarity=0.727  Sum_probs=24.2

Q ss_pred             ccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         57 RFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        57 ~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      +++.  +.||+|||+|+...|+||+++.+.
T Consensus        14 ~~~~--K~~KrrwF~lk~~~L~YyK~kee~   41 (106)
T cd01237          14 KLTL--KGYKQYWFTFRDTSISYYKSKEDS   41 (106)
T ss_pred             hhhh--hhheeEEEEEeCCEEEEEccchhc
Confidence            4556  799999999999999999988754

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family

Probab=97.89  E-value=2.7e-06  Score=69.63  Aligned_cols=62  Identities=18%  Similarity=0.327  Sum_probs=46.6

Q ss_pred             cchhhHHHHHHhhhccCCCCCCCCCCC--cccceeeeeeeE-eecCCccccccCCCCceeEEEEeCC
Q psy17477         11 TNPVAAATFLDLEDESGKCGMANKDDL--ISDDILRQGFLI-KRSQNKKRFSTSNNNYKQRWFVLTT   74 (108)
Q Consensus        11 ~~~~~v~~fl~~i~~~~~~~~~~~~~~--~~~~vlkeG~L~-Krg~~~k~~~~~~~nwK~RwFVLt~   74 (108)
                      ++..+|+.||+.|.+..+.....+...  ..+.++++|.+. ||.+|+..++.  ++||+|||+||-
T Consensus       268 ~~~~~~~~FL~~i~~v~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~  332 (337)
T cd05395         268 QGITQLKDFITRLVNCEESEEELQTRMSLQCATMVKEGFLFLHRTKGKGPLMT--SPFKKLYFTLTC  332 (337)
T ss_pred             HHHHHHHHHHHHHhCCCChhhcccccccCCcchHHHHHHHHHHhccCCCCccc--cchhhheeeeeh
Confidence            467889999999997777643211111  145556787777 99999999998  899999999993

Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=97.88  E-value=3e-05  Score=52.65  Aligned_cols=36  Identities=22%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecC
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD   83 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~   83 (108)
                      +.|+||+|.|.+...       ++|+.|||.|-...|-|++..
T Consensus         1 e~ikeG~L~K~~~~~-------~~~k~RyffLFnd~Ll~~~~~   36 (101)
T cd01219           1 ELLKEGSVLKISSTT-------EKTEERYLFLFNDLLLYCVPR   36 (101)
T ss_pred             CcccceEEEEEecCC-------CCceeEEEEEeCCEEEEEEcc
Confidence            368999999999877       499999999999999999953

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00233 PH Pleckstrin homology domain

Probab=97.88  E-value=4.9e-05  Score=46.91  Aligned_cols=37  Identities=32%  Similarity=0.787  Sum_probs=31.2

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      +++|+|.+++..    +.  ..|++|||+|.+..|.||+....
T Consensus         2 ~~~G~l~~~~~~----~~--~~~~~~~~~L~~~~l~~~~~~~~   38 (102)
T smart00233        2 IKEGWLYKKSGG----KK--KSWKKRYFVLFNSTLLYYKSEKA   38 (102)
T ss_pred             ceeEEEEEeCCC----cc--CCceEEEEEEECCEEEEEeCCCc
Confidence            689999998863    12  59999999999999999998753

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=97.84  E-value=2e-05  Score=52.76  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=27.9

Q ss_pred             eeeeEee----cCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         45 QGFLIKR----SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        45 eG~L~Kr----g~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ||+|..|    +.|++...   .+|++|||||++..|.||+.++
T Consensus         2 ~g~l~rk~~~~~~g~~~~~---~~Wk~r~~vL~~~~L~~ykd~~   42 (104)
T cd01253           2 EGSLERKHELESGGKKASN---RSWDNVYGVLCGQSLSFYKDEK   42 (104)
T ss_pred             CceEeEEEEeecCCcccCC---CCcceEEEEEeCCEEEEEecCc
Confidence            6777743    33554333   5999999999999999999765

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=97.63  E-value=3.3e-05  Score=54.93  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=23.9

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCce
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHL   77 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~L   77 (108)
                      .+.|||+|+|+...      ++||+|||||..-+.
T Consensus         3 k~sGyL~k~Gg~~~------KkWKKRwFvL~qvsQ   31 (117)
T cd01234           3 KHCGYLYAIGKNVW------KKWKKRFFVLVQVSQ   31 (117)
T ss_pred             ceeEEEEeccchhh------hhhheeEEEEEchhH
Confidence            48999999998544      699999999996443

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=97.18  E-value=0.00099  Score=46.45  Aligned_cols=49  Identities=27%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCC-ceeeeecCCcccccceEEecCCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK-HLIYYDTDSEIFLSGIRLSDLPD   98 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~-~LsYYk~~~ek~~~kG~I~~l~d   98 (108)
                      ...++++|++.|+.+-         -.|+|||+||.. .|.|++..+..  +||.|..-++
T Consensus        10 ge~Il~~g~v~K~kgl---------~~kkR~liLTd~PrL~Yvdp~~~~--~KGeI~~~~~   59 (104)
T PF14593_consen   10 GELILKQGYVKKRKGL---------FAKKRQLILTDGPRLFYVDPKKMV--LKGEIPWSKE   59 (104)
T ss_dssp             T--EEEEEEEEEEETT---------EEEEEEEEEETTTEEEEEETTTTE--EEEEE--STT
T ss_pred             CCeEEEEEEEEEeece---------EEEEEEEEEccCCEEEEEECCCCe--ECcEEecCCc
Confidence            4678999999998643         479999999987 77777765433  4788877654

>cd00900 PH-like Pleckstrin homology-like domain

Probab=97.06  E-value=0.0016  Score=40.03  Aligned_cols=39  Identities=28%  Similarity=0.678  Sum_probs=30.5

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      +|++.+++..... +.  ..|++|||+|+...|.||+.+.+.
T Consensus         2 ~g~l~~~~~~~~~-~~--~~w~~~~~~l~~~~l~~~~~~~~~   40 (99)
T cd00900           2 EGYLLKLGSDDVS-KG--KRWKRRWFFLFDDGLLLYKSDDKK   40 (99)
T ss_pred             ccEEEEeCCCccc-cc--cCceeeEEEEECCEEEEEEcCCCC
Confidence            6888888766421 12  589999999999999999988644

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.04  E-value=0.00075  Score=41.18  Aligned_cols=47  Identities=28%  Similarity=0.614  Sum_probs=33.6

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc--cccceEEecC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI--FLSGIRLSDL   96 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek--~~~kG~I~~l   96 (108)
                      ++|+|.+++...    .  ..|++|||+|.+..|.+|+.....  ....+.|++.
T Consensus         1 ~~G~l~~~~~~~----~--~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~   49 (96)
T cd00821           1 KEGYLLKKTGKL----R--KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLS   49 (96)
T ss_pred             CcchhhhhhChh----h--CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcC
Confidence            478888877554    1  489999999999999999977542  2234555443

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=96.73  E-value=0.002  Score=45.94  Aligned_cols=32  Identities=28%  Similarity=0.620  Sum_probs=27.5

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecC
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD   83 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~   83 (108)
                      ||+|+-|..++       +.||+|||+|+...|.|+-..
T Consensus         3 ~g~LylK~~gk-------KsWKk~~f~LR~SGLYy~~Kg   34 (114)
T cd01259           3 EGPLYLKADGK-------KSWKKYYFVLRSSGLYYFPKE   34 (114)
T ss_pred             cceEEEccCCC-------ccceEEEEEEeCCeeEEccCC
Confidence            89999999888       599999999999999666543

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=96.03  E-value=0.011  Score=41.85  Aligned_cols=39  Identities=18%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             eeeeeEee----cCCccc-cccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         44 RQGFLIKR----SQNKKR-FSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        44 keG~L~Kr----g~~~k~-~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      |||+|..|    +.+++. ++.  .-|++||.||++..|..|+...
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~--R~Wk~~y~vL~g~~L~~yKDe~   45 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGK--RSWKMFYGILRGLVLYLQKDEH   45 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCC--CcceEEEEEEECCEEEEEccCc
Confidence            78888875    445543 333  5999999999999999999874

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690|consensus

Probab=95.87  E-value=0.0022  Score=54.24  Aligned_cols=38  Identities=29%  Similarity=0.702  Sum_probs=31.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCC-CceeeeecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT-KHLIYYDTD   83 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~-~~LsYYk~~   83 (108)
                      ..++++||||+|||...       +||+.|+|+|-. .++.=|+.+
T Consensus        12 ~~~vvkEgWlhKrGE~I-------knWRpRYF~l~~DG~~~Gyr~k   50 (516)
T KOG0690|consen   12 QEDVVKEGWLHKRGEHI-------KNWRPRYFLLFNDGTLLGYRSK   50 (516)
T ss_pred             hhhhHHhhhHhhcchhh-------hcccceEEEEeeCCceEeeccC
Confidence            46789999999999998       499999999864 566666644

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=95.52  E-value=0.045  Score=39.47  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             eeeeeEe-ecCCccccccCCCCceeEEEEeCCCceeeeecCCccccc----ceEEecCCCCcccc
Q psy17477         44 RQGFLIK-RSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLS----GIRLSDLPDQIFHD  103 (108)
Q Consensus        44 keG~L~K-rg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~----kG~I~~l~d~~f~~  103 (108)
                      .||||.- +.++++      +.|+++|.||....+.+|+.+.++...    --.|.++.|..|+-
T Consensus         4 ~EGwvkvP~~~~~k------rGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV   62 (122)
T cd01243           4 YEGHVKIPKPGGVK------KGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSV   62 (122)
T ss_pred             ceeeEeccCCCCcc------cCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEE
Confidence            4899876 444544      699999999999999999977654311    12466888998874

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=95.13  E-value=0.034  Score=39.89  Aligned_cols=38  Identities=21%  Similarity=0.505  Sum_probs=30.9

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF   87 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~   87 (108)
                      +|||||+----.-       +++|+++++|....+++|.+..+.+
T Consensus         1 lkEGWmVHyT~~d-------~~rKRhYWrLDsK~Itlf~~e~~sk   38 (117)
T cd01239           1 LKEGWMVHYTSSD-------NRRKKHYWRLDSKAITLYQEESGSR   38 (117)
T ss_pred             CccceEEEEecCc-------cceeeeEEEecCCeEEEEEcCCCCe
Confidence            5899998844333       5999999999999999999887554

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=94.53  E-value=0.12  Score=35.15  Aligned_cols=33  Identities=30%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDT   82 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~   82 (108)
                      ..|+||.|+|.+..        ..++++|| |=.+-|-|+..
T Consensus         1 ~~ikEG~L~K~~~k--------~~~~R~~F-LFnD~LlY~~~   33 (99)
T cd01220           1 EFIRQGCLLKLSKK--------GLQQRMFF-LFSDLLLYTSK   33 (99)
T ss_pred             CeeeEEEEEEEeCC--------CCceEEEE-EccceEEEEEe
Confidence            36899999997742        35555555 44467777764

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=93.84  E-value=0.11  Score=36.15  Aligned_cols=39  Identities=31%  Similarity=0.575  Sum_probs=26.4

Q ss_pred             eeeeeeEee----cCCccc-cccCCCCceeEEEEeCCCceeeeecC
Q psy17477         43 LRQGFLIKR----SQNKKR-FSTSNNNYKQRWFVLTTKHLIYYDTD   83 (108)
Q Consensus        43 lkeG~L~Kr----g~~~k~-~~~~~~nwK~RwFVLt~~~LsYYk~~   83 (108)
                      .|||+|..|    +.+++. ++.  ..|+.-|.||++..|.+|+..
T Consensus         1 ~keG~l~RK~~~~~~gkk~~~~~--R~Wk~~y~vL~g~~L~~~k~~   44 (119)
T PF15410_consen    1 YKEGILMRKHELESGGKKASRSK--RSWKQVYAVLQGGQLYFYKDE   44 (119)
T ss_dssp             --EEEEEEEEEEECTTCC---S-----EEEEEEEEETTEEEEESSH
T ss_pred             CceEEEEEEEEEcCCCCCcCCCC--CCccEEeEEEECCEEEEEccC
Confidence            378998885    344443 244  699999999999999999984

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=93.61  E-value=0.12  Score=46.53  Aligned_cols=59  Identities=20%  Similarity=0.433  Sum_probs=45.0

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC-ccc--------ccceEEecCCCCcccc
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS-EIF--------LSGIRLSDLPDQIFHD  103 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~-ek~--------~~kG~I~~l~d~~f~~  103 (108)
                      .+..||||.--|..+  +|.  ...++|+|||.++.++|||.+. +..        ....+|+++.-+++|.
T Consensus         3 ~~~~eGW~y~~g~~k--ig~--~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g   70 (719)
T PLN00188          3 KVVYEGWMVRYGRRK--IGR--SYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHG   70 (719)
T ss_pred             cceEeeEEEEEcccc--ccc--ccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcC
Confidence            456899999977554  677  8899999999999999999743 221        1156788888887775

>KOG3751|consensus

Probab=93.53  E-value=0.073  Score=46.78  Aligned_cols=32  Identities=34%  Similarity=0.622  Sum_probs=28.0

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeec
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDT   82 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~   82 (108)
                      .+|+|+-|+.|+       +.||+-+|||+...|.|+-.
T Consensus       319 i~GfL~~K~dgk-------KsWKk~yf~LR~SGLYys~K  350 (622)
T KOG3751|consen  319 IQGFLYLKEDGK-------KSWKKHYFVLRRSGLYYSTK  350 (622)
T ss_pred             ccceeeeccccc-------ccceeEEEEEecCcceEccC
Confidence            489999999999       59999999999999966543

>KOG0248|consensus

Probab=92.37  E-value=0.037  Score=50.04  Aligned_cols=38  Identities=13%  Similarity=0.451  Sum_probs=29.8

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...-+.||+.+-+...       +.||+||||++....+||+.++
T Consensus       247 e~~ekSgy~~~~~s~~-------k~lkrr~~v~k~gqi~~y~~~~  284 (936)
T KOG0248|consen  247 ETMEKSGYWTQLTSRI-------KSLKRRYVVFKNGQISFYRKHN  284 (936)
T ss_pred             chhhcccchhcchHHH-------HHHHhHheeeccceEEEEEcCC
Confidence            3445789998887555       5889999999888888888766

>KOG1739|consensus

Probab=92.20  E-value=0.083  Score=46.17  Aligned_cols=50  Identities=22%  Similarity=0.302  Sum_probs=36.8

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc-cccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI-FLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek-~~~kG~I~~   95 (108)
                      .+-+-..|+|.|---..       .-|..|||||+...|+||++..+. ..|.|+|-+
T Consensus        21 dgw~e~~G~lskwtnyi-------~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l   71 (611)
T KOG1739|consen   21 DGWVERCGVLSKWTNYI-------HGWQDRYVVLKNGALSYYKSEDETEHGCRGSICL   71 (611)
T ss_pred             CCchhhcceeeeeeccc-------ccccceEEEEcccchhhhhhhhhhhcccceeeEe
Confidence            34444567777755444       378999999999999999988754 357888754

>KOG1737|consensus

Probab=91.97  E-value=0.13  Score=46.73  Aligned_cols=47  Identities=28%  Similarity=0.419  Sum_probs=35.4

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC-cccccceEEecCC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS-EIFLSGIRLSDLP   97 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~-ek~~~kG~I~~l~   97 (108)
                      .+|+|.|.--..       +.|.+|||+|+...++||.... .+..++|.|.+..
T Consensus        79 ~~g~l~k~~n~~-------~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~  126 (799)
T KOG1737|consen   79 LEGILLKWRNYS-------KGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVT  126 (799)
T ss_pred             ccceeecccccc-------CCcccceEEecCcceeeeccCCccccCCCCcccccc
Confidence            578888844333       4999999999999999998776 4445677776644

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=91.41  E-value=0.6  Score=33.27  Aligned_cols=54  Identities=19%  Similarity=0.493  Sum_probs=35.7

Q ss_pred             eeeeeEeecC-CccccccCCCCceeEEEEeCCCceeeeecCCcccc-cceEEecCCCCccc
Q psy17477         44 RQGFLIKRSQ-NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFL-SGIRLSDLPDQIFH  102 (108)
Q Consensus        44 keG~L~Krg~-~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~-~kG~I~~l~d~~f~  102 (108)
                      .||||.-... +++ . .  +.|+++|.||.+..+.+|+.+.++.. .-..|.++. ..||
T Consensus         2 lEGwlsvP~~~~~~-~-k--~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~-~~fh   57 (112)
T cd01242           2 MEGWLSLPNRTNKS-R-K--PGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDID-KLFH   57 (112)
T ss_pred             cceeEEccCCCCcc-c-c--CCceEEEEEEeCCEEEEEecCccccCCCcEEEEEcc-ceee
Confidence            4888865332 331 0 1  58999999999999999998764431 133455554 4887

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=91.12  E-value=0.049  Score=38.95  Aligned_cols=39  Identities=21%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ++|-.||+.|-|.-.-      ..|.+|+|.|-|+.|.+|-...+
T Consensus         2 DcIvhGyi~KLGGPFl------s~WQ~Ry~~LfPNRLE~~~~~~~   40 (116)
T cd01240           2 DCIVHGYIKKLGGPFL------SQWQTRYFKLYPNRLELYGESEA   40 (116)
T ss_pred             ceEEeeehhhhCCHHH------HHHHHHHheeCcceeeecccccc
Confidence            6788999999886543      49999999999999999765444

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>PLN02866 phospholipase D

Probab=90.87  E-value=0.36  Score=45.26  Aligned_cols=45  Identities=24%  Similarity=0.586  Sum_probs=31.4

Q ss_pred             eeeeeeeEee-----cC-Cccc-------cccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         42 ILRQGFLIKR-----SQ-NKKR-------FSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        42 vlkeG~L~Kr-----g~-~~k~-------~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      -.||||+.||     ++ +.+.       ++--+.+|.+|||||++..|.|.+.+.+.
T Consensus       182 K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~  239 (1068)
T PLN02866        182 KLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDA  239 (1068)
T ss_pred             CcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCC
Confidence            4689999999     22 1111       11133579999999999999999766533

>KOG3640|consensus

Probab=89.51  E-value=0.24  Score=46.14  Aligned_cols=50  Identities=14%  Similarity=0.212  Sum_probs=36.9

Q ss_pred             ccceeeeeeeEe--ecCCccccccCCCCceeEEEEeCCCceeeeecCC-cccc-cceEEec
Q psy17477         39 SDDILRQGFLIK--RSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS-EIFL-SGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~K--rg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~-ek~~-~kG~I~~   95 (108)
                      ..+|-..|+|+-  -+.|.       ..|.+||.+|....+.|++++. |+++ .-|.|++
T Consensus       987 ~idVEYrGFLtmfed~sgf-------GaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDL 1040 (1116)
T KOG3640|consen  987 AIDVEYRGFLTMFEDGSGF-------GAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDL 1040 (1116)
T ss_pred             ccceeeeeeeeeeeccCCC-------chhhhhhHHhcCCeeeeecCcchhcccCcceeeeh
Confidence            566777898887  34443       4799999999999999999997 4432 2466654

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=86.47  E-value=1.7  Score=29.77  Aligned_cols=46  Identities=22%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ++++|.+.||.+-         .+|+|-++||...--+|=++... .+||.|+.-+
T Consensus         1 Il~~g~v~Kr~gl---------f~kkR~LiLTd~PrL~yvdp~~~-~~KgeIp~s~   46 (89)
T cd01262           1 ILKIGAVKKRKGL---------FAKKRQLILTNGPRLIYVDPVKK-VVKGEIPWSD   46 (89)
T ss_pred             Cceeeeeeehhcc---------ccceeeEEEecCceEEEEcCCcC-eEEeEecccc
Confidence            4678888887643         56999999998554444444333 3478776655

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=80.82  E-value=2.2  Score=29.96  Aligned_cols=37  Identities=14%  Similarity=0.458  Sum_probs=27.3

Q ss_pred             eeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        45 eG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      .||+..|-++-. -+.  .+||.|+++|++..|..|+..-
T Consensus         2 mGW~~E~~~~~~-~~~--~~wrP~F~aL~~~dl~ly~s~P   38 (108)
T cd01258           2 IGWVNEQLSGDD-ESS--QRWRPRFLALKGSEFLFFETPP   38 (108)
T ss_pred             ceecccccCCCC-ccc--cccceEEEEEcCCcEEEEeCCC
Confidence            477777644321 122  5999999999999999999765

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=80.36  E-value=4.5  Score=27.89  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=26.5

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeee
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYD   81 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk   81 (108)
                      ..|+||.|+|-..         +.-+.|+|.|=.+-|-|-.
T Consensus         3 ~li~eG~L~K~~r---------k~~~~R~ffLFnD~LvY~~   34 (104)
T cd01218           3 VLVGEGVLTKMCR---------KKPKQRQFFLFNDILVYGN   34 (104)
T ss_pred             EEEecCcEEEeec---------CCCceEEEEEecCEEEEEE
Confidence            5789999999772         3678899999999999964

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
2lul_A	164	Solution Nmr Structure Of Ph Domain Of Tyrosine-Pro		7e-04

>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein Kinase Tec From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3504c Length = 164

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 48 LIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          LIKRSQ KK+  TS  NYK+R FVLT   L YY+  +E
Sbjct: 21 LIKRSQQKKK--TSPLNYKERLFVLTKSMLTYYEGRAE 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	5e-14
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	5e-14
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	1e-10
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	1e-09
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	1e-09
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	1e-09
2d9y_A	117	Pleckstrin homology domain-containing protein fami	1e-09
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	2e-09
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	2e-09
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	4e-09
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	4e-09
2yry_A	122	Pleckstrin homology domain-containing family A mem	6e-09
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-08
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	1e-08
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	2e-08
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	3e-08
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	5e-08
2dkp_A	128	Pleckstrin homology domain-containing family A mem	6e-08
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	7e-08
2d9v_A	130	Pleckstrin homology domain-containing protein fami	8e-08
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	9e-08
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	2e-07
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	4e-07
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	6e-07
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	1e-06
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-06
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	2e-06
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	2e-06
3cxb_B	112	Pleckstrin homology domain-containing family M mem	2e-06
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	3e-06
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	3e-06
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	8e-06
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	9e-06
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	1e-05
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	1e-05
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	1e-05
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	8e-05
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	9e-05
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	2e-04
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-04
1wi1_A	126	Calcium-dependent activator protein for secretion,	3e-04
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	3e-04
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	3e-04
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	4e-04
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	5e-04

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 63.4 bits (153), Expect = 5e-14
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
           ++ +   +KRSQ KK+ S  N  +K+  F+LT   L YY+ D E
Sbjct: 2  AVILESIFLKRSQQKKKTSPLN--FKKCLFLLTVHKLSYYEYDFE 44

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 63.2 bits (153), Expect = 5e-14
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------- 84
           +    ++ + + +  LIKRSQ KK+ S    NYK+R FVLT   L YY+  +       
Sbjct: 5  HHHHSHMNFNTILEEILIKRSQQKKKTS--PLNYKERLFVLTKSMLTYYEGRAEKKYRKG 62

Query: 85 EIFLSGIR 92
           I +S I+
Sbjct: 63 FIDVSKIK 70

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
          S  +L+QG+++K+   +K       N+ +RWFVL    + YY ++      G I L +
Sbjct: 5  SSGVLKQGYMMKKGHRRK-------NWTERWFVLKPNIISYYVSEDLKDKKGDILLDE 55

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
          S   ++ G+L K+    K       N++QR+FVL  + L YY  + +      ++L G  
Sbjct: 5  SSGPIKMGWLKKQRSIVK-------NWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCT 57

Query: 93 LSDLPD 98
          + ++  
Sbjct: 58 IKEIAT 63

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
             +++ G+ +K+    K       N+K+R+F L    + Y+ ++ E     +
Sbjct: 11 DSAVIKAGYCVKQGAVMK-------NWKRRYFQLDENTIGYFKSELEKEPLRV 56

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 39  SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
             + L+QG+L          S    N+K+RWFVL    L+Y++ DSE  L G + +  
Sbjct: 55  KQEALKQGWLHNNGGGSSTLS--RRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRS 110

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 12/62 (19%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
          +  + + G+L K++ +  +       + +RWFVL  + L YY  + E      I L   R
Sbjct: 8  NAPVTKAGWLFKQASSGVK------QWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFR 61

Query: 93 LS 94
          ++
Sbjct: 62 VA 63

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGI 91
          +    +R+G+L+K+             +K  W VL    + +Y   S+      I L G 
Sbjct: 1  MEPKRIREGYLVKKGSVFN-------TWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGS 53

Query: 92 RLSDLPD 98
           L+    
Sbjct: 54 TLTSPCQ 60

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLS 94
           +++QG+L K+S++   F    + +++RW V++     YY  +          + G  + 
Sbjct: 2  SVIKQGYLEKKSKDHSFFG---SEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVR 58

Query: 95 DLPD 98
            P 
Sbjct: 59 MAPH 62

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
          S   ++ G+L K S   KR       +++RW       + YY+ + E++  G I LS 
Sbjct: 5  SSGKVKSGWLDKLSPQGKR------MFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSA 56

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 49.4 bits (118), Expect = 4e-09
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 16/81 (19%)

Query: 26 SGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTD 83
          SG  G+  K++     I++QG L+K+   +K       N+K R F+L     +L YYD  
Sbjct: 3  SGSSGVILKEEF-RGVIIKQGCLLKQGHRRK-------NWKVRKFILREDPAYLHYYDPA 54

Query: 84 SE------IFLSGIRLSDLPD 98
                  I L G  ++ +  
Sbjct: 55 GAEDPLGAIHLRGCVVTSVES 75

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 49.0 bits (117), Expect = 6e-09
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 12/62 (19%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
          +  + + G+L K++ +  +       + +RWFVL  + L YY  + E      I L   R
Sbjct: 19 NAPVTKAGWLFKQASSGVK------QWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFR 72

Query: 93 LS 94
          ++
Sbjct: 73 VA 74

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 13/66 (19%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
          S      G+L +   +KK        +K  WFV+  K L  Y    +        L G  
Sbjct: 5  SSGSTMSGYLYRSKGSKK-------PWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFT 57

Query: 93 LSDLPD 98
          ++ + D
Sbjct: 58 VTLVKD 63

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSE------IFLSG 90
          +  I++QG L+K+   +K       N+K R F+L     +L YYD          I L G
Sbjct: 4  TGVIIKQGCLLKQGHRRK-------NWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRG 56

Query: 91 IRLSDLPDQ 99
            ++ +   
Sbjct: 57 CVVTSVESN 65

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
               ++G+L K+    K        +K RWF L    L Y+          I
Sbjct: 15 PSLGTKEGYLTKQGGLVK-------TWKTRWFTLHRNELKYFKDQMSPEPIRI 60

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 16/69 (23%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSE-------IFLS 89
          S  +++QG+L K+   +K       N+K R FVL      L YYD   E         L 
Sbjct: 15 SGTVVKQGYLAKQGHKRK-------NWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR 67

Query: 90 GIRLSDLPD 98
          G  +S L D
Sbjct: 68 GSLVSALED 76

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
            +++ G+L KR ++          +++RW  L+     YY +D +    G   +  
Sbjct: 15 PFVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDG 68

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 46.3 bits (110), Expect = 6e-08
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
          +  ++R+G+L       K+ ST    +K+RWFVL+   L YY  + E      I L   +
Sbjct: 18 NAPVVRRGWL------YKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQ 71

Query: 93 LSDLPDQ 99
          ++ L  +
Sbjct: 72 IALLTSE 78

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 45.9 bits (109), Expect = 7e-08
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTDSEIFLSG-IRLSD 95
          S     +G L K+    K        +K RWFVL  T   L YYD   +    G I L++
Sbjct: 5  SSGRSYEGILYKKGAFMK-------PWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAE 57

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 46.1 bits (109), Expect = 8e-08
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSE 85
          S  ++R G+L ++S   +        +K+ WF L     L YY  ++ 
Sbjct: 5  SSGLVRGGWLWRQSSILR-------RWKRNWFALWLDGTLGYYHDETA 45

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 45.8 bits (108), Expect = 9e-08
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLS 94
          +  R+G+L+K     K        +K+RWF+LT   L Y++  ++      I L  + + 
Sbjct: 4  NPDREGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 56

Query: 95 DLPDQ 99
          ++ D 
Sbjct: 57 EVLDP 61

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE---------IFLSGIRL 93
          ++ GFL +RS+  K       +Y + ++VLT   L  + T            + LS   +
Sbjct: 7  IKSGFLERRSKFLK-------SYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTV 59

Query: 94 SDLPDQ 99
          ++   +
Sbjct: 60 TEHSRK 65

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 41  DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
            +++ G+L KR ++          +++RW  L+     YY +D +        + G  
Sbjct: 105 FVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYD 159

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 43.6 bits (103), Expect = 6e-07
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRL 93
          +  +G+L K+  +  R       +K+RWFVL+   L YY    E      + L    +
Sbjct: 11 VHIRGWLHKQDSSGLR------LWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNI 62

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 14/66 (21%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
          S  I+   +L  R   K        ++ + W VL    L+ Y T         + L+   
Sbjct: 5  SSGIVMADWLKIRGTLK--------SWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACE 56

Query: 93 LSDLPD 98
          + + P 
Sbjct: 57 IIERPS 62

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-IFLSGIRLSDL 96
          +  +GFL+ +    +        Y+  W  L    L +Y      I++  + + DL
Sbjct: 18 LYFEGFLLIKRSGYR-------EYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDL 66

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKH------LIYYDTDSEIFLSGI 91
             I + G+L K +      S +  ++K+R+F L            Y D        G 
Sbjct: 15 KGGITKHGWLYKGN-MNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGS 72

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 37  LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
            +S + L++G++ K    +         +++RWF +  + L+Y+    + F  G
Sbjct: 264 KLSRNYLKEGYMEKTGPKQT------EGFRKRWFTMDDRRLMYFKDPLDAFARG 311

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
          ++G L  ++           ++K  + VL+   L  Y   +++     
Sbjct: 2  KEGMLHYKAGTSY---LGKEHWKTCFVVLSNGILYQYPDRTDVIPLLS 46

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSE 85
          S   ++ G+L+++S   K        +K+ WF L    HLIYYD  + 
Sbjct: 2  SMAFVKSGWLLRQSTILK-------RWKKNWFDLWSDGHLIYYDDQTR 42

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSE 85
            I+++G+L KR +  K        ++ R+F+L      I Y    +
Sbjct: 6  VAIVKEGWLHKRGEYIK-------TWRPRYFLLKNDGTFIGYKERPQ 45

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 40.1 bits (94), Expect = 8e-06
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          + R G L K +            ++ RW VL    L YY ++ E
Sbjct: 1  VERCGVLSKWTNYIH-------GWQDRWVVLKNNALSYYKSEDE 37

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 40.2 bits (94), Expect = 9e-06
 Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL 93
          ++G+L+K+S   ++       +++R   +    L      S    + + L
Sbjct: 12 KKGYLLKKSDGIRK------VWQRRKCSVKNGILTISHATSNRQPAKLNL 55

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 8/54 (14%)

Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTDSEIFLSG-IRLSD 95
           G+L K              +K RWF        L Y  T  +      I LS 
Sbjct: 11 CGYLSKFGG-----KGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSS 59

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
            ++Q FL+KRS N       N  +K+++  L++   + Y     
Sbjct: 3  IPIKQSFLLKRSGNS-----LNKEWKKKYVTLSSNGFLLYHPSIN 42

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
             ++R+G+L   +    +        K+ WFVLT ++L +Y  D E      + +  ++
Sbjct: 9  EILVIRKGWLTINNIGIMK-----GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLK 63

Query: 93 LSDLPD 98
          L D+  
Sbjct: 64 LRDVEK 69

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 38.6 bits (89), Expect = 8e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 41 DILRQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTKHLIYY 80
          D  ++G+L  R       KR   S   +KQ + VL    L  Y
Sbjct: 2  DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLY 44

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-------IFLSGI 91
          S  +    +L             N+ +K RW  +   HL +Y   +        + L G 
Sbjct: 5  SSGLETSSYLNVLV---------NSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGC 55

Query: 92 RLSDLPDQ 99
           +   P  
Sbjct: 56 EVVPDPSP 63

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
           +G L +++  K+    + +++ + W VL+   L+YY   S 
Sbjct: 3  MEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSL 44

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 38 ISDDILRQGFLIKRS-----QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
              + + G L  ++     +NKK  S +   +K  W  L    L +Y+TD  
Sbjct: 7  AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGR 59

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 16/66 (24%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE----------IFL 88
          S  +   G+L    +N  +       +K+R+FVL       +   S           + L
Sbjct: 5  SSGMKHSGYLWAIGKNVWK------RWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQL 58

Query: 89 SGIRLS 94
           G  + 
Sbjct: 59 DGYTVD 64

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 32 ANKDDLISDDILRQGFLIKR--SQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
          + +  + S ++ + G L     +Q  ++      N+   W VLT   L++Y
Sbjct: 2  SRRASVGSHEVEKSGLLNMTKIAQGGRK---LRKNWGPSWVVLTGNSLVFY 49

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 40  DDILRQGFLIKRSQ-----NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLS 94
             + + G+L  +        +K    +   +KQ W  L    L++Y+T  +         
Sbjct: 9   GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAP 68

Query: 95  DLPDQIFHDILVPA 108
                    I+   
Sbjct: 69  RCALFAEDSIVQSV 82

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          ++  +  +GFL                + +RW VL+   + Y+    +
Sbjct: 1  VNSSVEERGFLTIFEDVSGF-----GAWHRRWCVLSGNCISYWTYPDD 43

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 7/41 (17%)

Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          +G L K +            ++ RWFVL    L YYD+  +
Sbjct: 2  EGVLYKWTNYLT-------GWQPRWFVLDNGILSYYDSQDD 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.67
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.54
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.38
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.34
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.34
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.33
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.33
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.32
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.31
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.31
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.3
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.3
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.29
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.28
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.28
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.28
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.28
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.27
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.26
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.25
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.23
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.23
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.23
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.23
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.23
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.23
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.22
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.22
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.22
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.22
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.22
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.21
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.2
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.2
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.2
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.17
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.13
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.09
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.09
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.08
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.07
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.05
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.02
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	98.98
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	98.96
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	98.95
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	98.89
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	98.87
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	98.86
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	98.86
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	98.82
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	98.82
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	98.8
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	98.77
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	98.75
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	98.69
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	98.6
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.5
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.45
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	98.42
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	98.34
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	98.16
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	98.05
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	97.92
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.82
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	97.78
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	97.76
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.72
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	97.65
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	97.63
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	97.2
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	95.2
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	92.64

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.67  E-value=1e-16  Score=115.28  Aligned_cols=59  Identities=36%  Similarity=0.422  Sum_probs=51.7

Q ss_pred             CCcccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         36 DLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        36 ~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ..|..++|+||+|+|||++++++++  +|||+|||||++..|+||+++.+...++|.|++-
T Consensus         9 ~~m~~~~i~EG~L~Kr~~~kk~~~~--knWKkRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~   67 (164)
T 2lul_A            9 SHMNFNTILEEILIKRSQQKKKTSP--LNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVS   67 (164)
T ss_dssp             CCCCSSEEEEEEEEEECCCCSSSCC--CCEEEEEEEEESSEEEEECCCSSSCCCCCEEEGG
T ss_pred             ccCCCCeeEEEEEEEecCCCCCCCC--CCceeEEEEEECCEEEEEeccCcccccccEEEEe
Confidence            3568999999999999999999999  9999999999999999999876554457888763

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.54  E-value=6.2e-15  Score=106.82  Aligned_cols=52  Identities=31%  Similarity=0.448  Sum_probs=43.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecC----CcccccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD----SEIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~----~ek~~~kG~I~~   95 (108)
                      ++|++|||+|||++.+.+++  ++||+|||||+++.|.||+++    .+. ..+|.|++
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~--k~WKkRwFVL~~~~L~Yyk~~~~~~~~~-~~~G~I~L   57 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSP--LNFKKCLFLLTVHKLSYYEYDFERGRRG-SKKGSIDV   57 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCC--CCEEEEEEEECSSEEEEEEEETTTTEEE-EEEEEEEG
T ss_pred             ceEEEEEEEEecCCCCCccc--CCCceEEEEEcCCEEEEEecCCccCCCC-ceeeEEEC
Confidence            57899999999998877777  899999999999999999983    233 34777754

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.38  E-value=7.3e-13  Score=87.46  Aligned_cols=52  Identities=21%  Similarity=0.387  Sum_probs=43.4

Q ss_pred             cccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        38 ~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      |.+.++++|||.|+|+..       ++||+|||||+.+.|.||+.+.+.. .+|.|++-.
T Consensus         1 me~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~~   52 (113)
T 1pls_A            1 MEPKRIREGYLVKKGSVF-------NTWKPMWVVLLEDGIEFYKKKSDNS-PKGMIPLKG   52 (113)
T ss_dssp             CCCCCSEEEEEEEESSSS-------SCCEEEEEEEETTEEEEESSTTCSS-CSEEEESSS
T ss_pred             CCCCCcEEEEEEEeCCCC-------CCceEEEEEEECCEEEEEeCCCCCC-cceEEEcCC
Confidence            467889999999999766       5999999999999999999886543 478887643

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.34  E-value=2.4e-12  Score=92.37  Aligned_cols=51  Identities=20%  Similarity=0.383  Sum_probs=41.7

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|+|...       ++||+|||||+++.|.||+++.+.. ..|.|++-.
T Consensus        15 ~~pv~keG~L~Kkg~~~-------k~WkrRWFvLk~~~L~Yyk~~~d~~-~~g~I~L~~   65 (149)
T 1x1f_A           15 ALPLYFEGFLLIKRSGY-------REYEHYWTELRGTTLFFYTDKKSII-YVDKLDIVD   65 (149)
T ss_dssp             SSCEEEEEEEEEECTTC-------CSCEEEEEEEETTEEEEESCSSCSS-CSEECCCSS
T ss_pred             CCCccEEEEEEEeCCCC-------CCceeEEEEEcCCEEEEEeCCCccc-cCcEEECCC
Confidence            34499999999999776       5999999999999999999987654 357765443

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.34  E-value=1.2e-12  Score=93.09  Aligned_cols=48  Identities=33%  Similarity=0.466  Sum_probs=38.8

Q ss_pred             ceeeeeeeEee-cCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         41 DILRQGFLIKR-SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Kr-g~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      .|+++|||+|+ +...+      .+||+||||||.++|+|||+..++.. +|+|.+
T Consensus        11 ~VirkGWL~k~~~g~~k------~~wk~rWFVLt~~~L~yyKd~~eke~-~G~IpL   59 (125)
T 1dyn_A           11 LVIRKGWLTINNIGIMK------GGSKEYWFVLTAENLSWYKDDEEKEK-KYMLSV   59 (125)
T ss_dssp             CEEEEEEEEESCCCGGG------TSSEEEEEEEESSEEEEESSTTCSCE-EEEEEC
T ss_pred             ceEEEEEEEEecCcccc------CCceeeEEEEeccceeeecCCccccc-ceEEEC
Confidence            48999999996 43332      35999999999999999999887753 788755

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.33  E-value=2.4e-12  Score=88.31  Aligned_cols=48  Identities=27%  Similarity=0.500  Sum_probs=40.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEe-CCCceeeeecCCcccccceEEe
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVL-TTKHLIYYDTDSEIFLSGIRLS   94 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVL-t~~~LsYYk~~~ek~~~kG~I~   94 (108)
                      ...++++|||+|+|...       ++||+||||| +...|.||+.+.+.. .+|.|.
T Consensus         5 ~~~v~~~G~L~K~g~~~-------k~WkkRwFVL~~~~~L~Yyk~~~~~~-~~g~i~   53 (130)
T 2d9v_A            5 SSGLVRGGWLWRQSSIL-------RRWKRNWFALWLDGTLGYYHDETAQD-EEDRVV   53 (130)
T ss_dssp             CCCEEEEEEEEEECSSS-------CCEEEEEEEEETTTEEEEESSSSTTS-EEEEEE
T ss_pred             CCceeEEEEEEeecCcc-------CCceeeEEEEccCCEEEEEeCCCCCC-cCceEe
Confidence            56789999999998765       5999999999 899999999886543 367763

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.33  E-value=2.1e-12  Score=83.14  Aligned_cols=48  Identities=25%  Similarity=0.389  Sum_probs=39.1

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc-ccceEEecC
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF-LSGIRLSDL   96 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~-~~kG~I~~l   96 (108)
                      |.|+|||.|+|...       ++||+|||||+++.|.||+.+.+.. .+.|.|++.
T Consensus         1 V~k~G~L~K~g~~~-------k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~   49 (94)
T 2rsg_A            1 VERCGVLSKWTNYI-------HGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLS   49 (94)
T ss_dssp             CCEEEEEEEESSST-------TCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETT
T ss_pred             CCEEEEEEEeCCCC-------CCceEEEEEEECCEEEEEEecccccccceeeEecc
Confidence            57999999999776       5999999999999999999876432 346777654

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.32  E-value=3.5e-12  Score=85.73  Aligned_cols=58  Identities=29%  Similarity=0.391  Sum_probs=43.7

Q ss_pred             CCCCCCcccceeeeeeeEeecCCccccccCCCCceeEEEEeC--CCceeeeecCCcccccceEEecC
Q psy17477         32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        32 ~~~~~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt--~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      +....++...++++|||.|+|...       ++||+|||||+  ...|.||+.+.+...++|.|++-
T Consensus         8 ~~~~~~~~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~   67 (129)
T 1x1g_A            8 SLSTVELSGTVVKQGYLAKQGHKR-------KNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR   67 (129)
T ss_dssp             CSCCCTTCSEEEEEEEEEEECSSS-------SSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEEST
T ss_pred             CccccccCCCEEEEEEEEEECCCC-------CCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECc
Confidence            333344578999999999998765       59999999999  47999999873222347777653

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.31  E-value=5.9e-12  Score=84.79  Aligned_cols=52  Identities=27%  Similarity=0.356  Sum_probs=42.3

Q ss_pred             CcccceeeeeeeEeecCCccccccCCCCceeEEEEeCCC--ceeeeecCCcccccceEEecC
Q psy17477         37 LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK--HLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        37 ~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~--~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ++...++++|||.|+|+..       ++||+|||||+.+  .|.||+.+.+.. .+|.|++-
T Consensus        13 ~~~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~~~L~yy~~~~~~~-~~g~i~L~   66 (129)
T 1x05_A           13 EFRGVIIKQGCLLKQGHRR-------KNWKVRKFILREDPAYLHYYDPAGAED-PLGAIHLR   66 (129)
T ss_dssp             TTCSEEEEEEEEEECCSSC-------CCCEEEEEEEEETTTEEEEECSSCCSS-CSEEEECT
T ss_pred             cccCCceEEEEEEecCCCC-------CCCeeEEEEEeCCCCEEEEECCCCCCc-ceeEEEcc
Confidence            4578899999999998765       5999999999976  799999875443 47877654

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.31  E-value=4.5e-12  Score=82.56  Aligned_cols=51  Identities=27%  Similarity=0.393  Sum_probs=41.4

Q ss_pred             cccceeeeeeeEeecCCccccccCCCCceeEEEEeCCC--ceeeeecCCcccccceEEecC
Q psy17477         38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK--HLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        38 ~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~--~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      +...++++|||.|+|+..       ++||+|||||+.+  .|.||+.+.+.. .+|.|++-
T Consensus         3 ~~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~~~L~yyk~~~~~~-~~g~i~L~   55 (109)
T 2i5f_A            3 FTGVIIKQGCLLKQGHRR-------KNWKVRKFILREDPAYLHYYDPAGAED-PLGAIHLR   55 (109)
T ss_dssp             CCCCEEEEEEEEEECTTT-------CCEEEEEEEEETTTTEEEEECTTSCSS-CSEEEECT
T ss_pred             ccCceeEEEEEEEcCCCC-------CCceEEEEEEeCCCcEEEEECCCCCCC-ccEEEECC
Confidence            367899999999999765       5999999999976  999999876543 47777653

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.30  E-value=4.4e-12  Score=84.10  Aligned_cols=51  Identities=24%  Similarity=0.455  Sum_probs=42.2

Q ss_pred             ccceeeeeeeEeecC-CccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQ-NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~-~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|++. ..       ++||+|||||+...|.||+.+.+.. .+|.|++-.
T Consensus         5 ~~~~~~~G~L~K~~~~~~-------~~WkkR~fvL~~~~L~yy~~~~~~~-~~g~i~l~~   56 (115)
T 2cod_A            5 SSGKVKSGWLDKLSPQGK-------RMFQKRWVKFDGLSISYYNNEKEMY-SKGIIPLSA   56 (115)
T ss_dssp             CSCCCEEEEEEECCSSSS-------SCCEEEEEEECSSEEEEEESSCCSS-CCCEEETTT
T ss_pred             CCCccEEEEEEEcCCCCC-------CCCceEEEEEECCEEEEEcCCCCcc-cCCEEECCc
Confidence            577899999999987 43       5999999999999999999887643 478877643

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.30  E-value=3.1e-12  Score=89.32  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=41.1

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|+| ..       ++||+|||||++..|.||+++.+.. ..|.|++-
T Consensus         5 ~~~v~k~GwL~K~g-~~-------k~WkrRWfVLk~~~L~yyk~~~~~~-p~G~I~L~   53 (130)
T 1v88_A            5 SSGIVMADWLKIRG-TL-------KSWTKLWCVLKPGVLLIYKTQKNGQ-WVGTVLLN   53 (130)
T ss_dssp             SSSCCEEEEEEECC-SS-------SSCEEEEEEEETTEEEEESCSSSCC-CCEEEECS
T ss_pred             CCceEEEeEEEEeC-CC-------CCceEEEEEEECCEEEEECCCCCCC-ceEEEEcC
Confidence            46789999999998 44       5999999999999999999987653 47888754

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.7e-12  Score=83.18  Aligned_cols=50  Identities=26%  Similarity=0.543  Sum_probs=41.1

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|+++..       ++||+|||||+...|.||+.+.+.. .+|.|++-
T Consensus         5 ~~~~~~~G~L~K~~~~~-------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~   54 (115)
T 2dn6_A            5 SSGVLKQGYMMKKGHRR-------KNWTERWFVLKPNIISYYVSEDLKD-KKGDILLD   54 (115)
T ss_dssp             CCSCSEEEEEEEECTTS-------SCEEEEEEEECSSCEEEESSTTCSS-EEEEECCC
T ss_pred             CCCceEEEEEEecCCCC-------CCcEEeEEEEECCEEEEeCCCCCcc-cCcEEEec
Confidence            46788999999999865       5999999999999999999876543 36766554

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.28  E-value=5.1e-12  Score=84.12  Aligned_cols=49  Identities=24%  Similarity=0.428  Sum_probs=40.6

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ..++++|||.|+|+..       ++||+|||||+...|.||+.+.+.. .+|.|++-
T Consensus         3 ~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~   51 (127)
T 1fgy_A            3 FNPDREGWLLKLGGRV-------KTWKRRWFILTDNCLYYFEYTTDKE-PRGIIPLE   51 (127)
T ss_dssp             SSCSEEEEEEEECSSS-------CCEEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             CCCceEeEEEEECCCC-------CCeEEEEEEEECCEEEEeCCCCCCC-cceEEECC
Confidence            4578999999998775       5999999999999999999876543 47887653

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.28  E-value=5.4e-12  Score=82.95  Aligned_cols=50  Identities=24%  Similarity=0.405  Sum_probs=41.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|++.+.       ++||+|||||+...|.||+.+.+.. .+|.|++.
T Consensus         5 ~~~~~~~G~L~K~~~~~-------~~Wk~RwfvL~~~~L~yyk~~~~~~-~~~~i~L~   54 (109)
T 1wgq_A            5 SSGSTMSGYLYRSKGSK-------KPWKHLWFVIKNKVLYTYAASEDVA-ALESQPLL   54 (109)
T ss_dssp             CCSCSCEEEEEEESSTT-------SCCEEEEEEEETTEEEEESCTTCSS-CSEEEECS
T ss_pred             CCCCeEEEEEEeCCCCC-------CCceeEEEEEeCCEEEEECCCCcCc-cCceEECC
Confidence            45678899999998776       5999999999999999999886543 36776653

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.28  E-value=6e-12  Score=82.89  Aligned_cols=50  Identities=28%  Similarity=0.412  Sum_probs=41.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeC--CCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt--~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      .+.++++|||.|+|...       ++||+|||||+  ...|.||+.+.+.. .+|.|++-
T Consensus         5 ~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~~~L~yy~~~~~~~-~~g~i~L~   56 (117)
T 1v5u_A            5 SSGRSYEGILYKKGAFM-------KPWKARWFVLDKTKHQLRYYDHRMDTE-CKGVIDLA   56 (117)
T ss_dssp             CCSSSEEEEEEECCCSS-------SCCEEEEEEEETTTTEEEEESSSSCSS-CCCEEEGG
T ss_pred             cCCccEEEEEEecCCCC-------CCceeeEEEEECCCCEEEEeecCCCCc-cceEEEcc
Confidence            56788999999999765       59999999999  78999999887543 47777653

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.28  E-value=6.5e-12  Score=82.44  Aligned_cols=49  Identities=27%  Similarity=0.456  Sum_probs=40.7

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ...++++|||.|+|...       ++||+|||||+...|.||+.+.+.. .+|.|++
T Consensus         5 ~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L   53 (118)
T 1v89_A            5 SSGPIKMGWLKKQRSIV-------KNWQQRYFVLRAQQLYYYKDEEDTK-PQGCMYL   53 (118)
T ss_dssp             SSCEEEEEEEEEECSSS-------SCEEEEEEEEETTEEEEESSSSCCS-CSEEECS
T ss_pred             CCCCcEEEEEEecCCCC-------CCccEEEEEEECCEEEEEeCCCCCC-ceEEEEC
Confidence            46789999999998765       5999999999999999999886543 3677654

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.27  E-value=7.6e-12  Score=83.27  Aligned_cols=51  Identities=18%  Similarity=0.363  Sum_probs=42.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|+|...       ++||+|||||+.+.|.||+.+.+.. .+|.|++-.
T Consensus        11 ~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~l~~   61 (125)
T 1eaz_A           11 DSAVIKAGYCVKQGAVM-------KNWKRRYFQLDENTIGYFKSELEKE-PLRVIPLKE   61 (125)
T ss_dssp             -CCCSEEEEEEEECTTT-------CCEEEEEEEECSSEEEEESSTTCSS-CSEEEEGGG
T ss_pred             CCCccEEEEEEEeCCCC-------CCcceEEEEEeCCEEEEEcCCCCCc-ceeEEEccc
Confidence            57889999999998765       5999999999999999999887543 478887644

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.26  E-value=8.6e-12  Score=82.14  Aligned_cols=47  Identities=28%  Similarity=0.595  Sum_probs=37.8

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEe-CCCceeeeecCCcccccceEEe
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVL-TTKHLIYYDTDSEIFLSGIRLS   94 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVL-t~~~LsYYk~~~ek~~~kG~I~   94 (108)
                      ..++++|||.|+|...       ++||+||||| +...|.||+++.+.. .+|.|+
T Consensus         3 ~~~~~~G~L~K~g~~~-------k~WkkR~fvL~~~~~L~yyk~~~~~~-~~g~i~   50 (112)
T 3aj4_A            3 MAFVKSGWLLRQSTIL-------KRWKKNWFDLWSDGHLIYYDDQTRQN-IEDKVH   50 (112)
T ss_dssp             CSCSEEEEEEEECSSS-------CCEEEEEEEECTTSEEEEESSTTCCS-EEEEEE
T ss_pred             cceeEEEEEEeeCCCC-------CCeeceEEEEeeCCEEEEEcCCCCCC-CCcccc
Confidence            4578999999998765       5999999999 888999999886543 255554

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.25  E-value=7.1e-12  Score=80.92  Aligned_cols=52  Identities=21%  Similarity=0.488  Sum_probs=40.9

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      .++++|||.|++.+...+.   ++|++|||||+...|.||+.+.+.. ++|.|++-
T Consensus         2 ~v~~~G~L~K~~~~~~~~~---~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~   53 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFG---SEWQKRWCVVSRGLFYYYANEKSKQ-PKGTFLIK   53 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSC---EEEEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             CccEEEEEEEcCCCCCccc---cCceeeEEEEeCCEEEEecCCCCCC-CCEEEEec
Confidence            5899999999986542222   4999999999999999999887543 47887653

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.3e-11  Score=83.14  Aligned_cols=51  Identities=22%  Similarity=0.281  Sum_probs=41.0

Q ss_pred             ccceeeeeeeEeecCC-ccccccCCCCceeEEEEeCCC--ceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQN-KKRFSTSNNNYKQRWFVLTTK--HLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~-~k~~~~~~~nwK~RwFVLt~~--~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ....+++|||.|+|.. ..      ++||+|||||+..  .|.||+.+.+.. ++|.|++-
T Consensus         5 ~~~~~~~G~L~K~g~~~~~------k~WkkRwfvL~~~~~~L~Yy~~~~~~~-~~g~I~L~   58 (119)
T 2dhk_A            5 SSGKKLCGYLSKFGGKGPI------RGWKSRWFFYDERKCQLYYSRTAQDAN-PLDSIDLS   58 (119)
T ss_dssp             CSCCCCEEEEEECSCSSSS------CCCEEEEEEEETTTTEEEEESSTTCCS-CSEEEEGG
T ss_pred             CCCCcEEEEEEecCCCCCC------CCceeEEEEEECCccEEEEECCCCCcc-cccEEECC
Confidence            3566789999999862 21      6999999999998  999999887653 48888764

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2e-11  Score=81.42  Aligned_cols=51  Identities=18%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|++.+..      ++||+|||||+...|.||+.+.+..  .|.|.++.
T Consensus         7 ~~~~~~~G~L~K~~~~~~------k~WkkR~fvL~~~~L~yyk~~~~~~--~~~i~l~~   57 (114)
T 2da0_A            7 GYGSEKKGYLLKKSDGIR------KVWQRRKCSVKNGILTISHATSNRQ--PAKLNLLT   57 (114)
T ss_dssp             CCCSCEEEEEEEECSSSC------CCEEEEEEEEETTEEEECCSSCCSC--CEEEETTT
T ss_pred             CCCccEEEEEEEeCCCCC------CCceeEEEEEeCCEEEEEcCCCCCC--CCEEEeee
Confidence            467889999999997542      5999999999999999999876543  46665543

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.23  E-value=1.9e-11  Score=81.27  Aligned_cols=50  Identities=26%  Similarity=0.373  Sum_probs=40.3

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ...++++|||.|++++..      ++||+|||||+...|.||+++.+.. .+|.|++
T Consensus         8 ~~~~~~~G~L~K~~~~~~------~~WkkR~fvL~~~~L~yy~~~~~~~-~~g~i~l   57 (123)
T 1upq_A            8 NLPVHIRGWLHKQDSSGL------RLWKRRWFVLSGHCLFYYKDSREES-VLGSVLL   57 (123)
T ss_dssp             TSCEEEEEEEEEECSSSS------CCEEEEEEEEETTEEEEESSTTCCS-CCEEEEG
T ss_pred             CCCceEEEEEEeeCCCCC------CCceeEEEEEeCCEEEEECCCCCcc-cceEEEC
Confidence            345899999999986332      6999999999999999999887553 4788763

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.5e-11  Score=79.90  Aligned_cols=52  Identities=25%  Similarity=0.519  Sum_probs=41.6

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|++....      ++||+|||||+...|.||+.+.+.. .+|.|++..
T Consensus        19 ~~~~~~~G~L~K~~~~~~------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~~   70 (122)
T 2yry_A           19 NAPVTKAGWLFKQASSGV------KQWNKRWFVLVDRCLFYYKDEKEES-ILGSIPLLS   70 (122)
T ss_dssp             TCCEEEEEEEEEECCSSS------CCEEEEEEEEETTEEEEESSTTCCS-CCEEEESTT
T ss_pred             CCCccEEEEEEEECCCCC------CCcEEEEEEEeCCEEEEECCCCCCC-cccEEEcCC
Confidence            456899999999985322      6999999999999999999876553 478877643

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.6e-11  Score=80.85  Aligned_cols=51  Identities=25%  Similarity=0.526  Sum_probs=40.9

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|++....      ++||+|||||+...|.||+.+.+.. .+|.|++-
T Consensus         8 ~~~~~~~G~L~K~~~~~~------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~   58 (117)
T 2d9y_A            8 NAPVTKAGWLFKQASSGV------KQWNKRWFVLVDRCLFYYKDEKEES-ILGSIPLL   58 (117)
T ss_dssp             SCCCCEEEEEEEECTTSS------SCEEEEEEEEETTEEEEESSTTCCS-CCEEEECS
T ss_pred             CCCeeEEEEEEEeCCCCC------CCceEEEEEECCCEEEEECCCCCCC-cCCEEEeC
Confidence            467899999999984322      6999999999999999999876553 47877654

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.23  E-value=5e-12  Score=84.94  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=34.7

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeCC-CceeeeecCCcc
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT-KHLIYYDTDSEI   86 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~-~~LsYYk~~~ek   86 (108)
                      +.++++|||.|+|+..       ++||+|||||++ ..|.||+.+.+.
T Consensus         6 ~~~~~~G~L~K~g~~~-------k~WkkRwfvL~~~~~L~yy~~~~~~   46 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYI-------KTWRPRYFLLKNDGTFIGYKERPQD   46 (125)
T ss_dssp             GCEEEEEEEEEECSSS-------CCEEEEEEEEETTSEEEEESSCCCS
T ss_pred             CCeeEEeeEEeccCCc-------cCccCcEEEEecCCEEEEEeCCCCC
Confidence            7789999999999765       599999999996 599999987653

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.22  E-value=1.8e-11  Score=84.80  Aligned_cols=54  Identities=19%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|+|...+.+.   ++||+|||||+...|.||+.+.+.. .+|.|.+-
T Consensus        14 ~~~~~~~G~L~K~g~~~~~~~---k~WkkR~fvL~~~~L~yyk~~~~~~-~~g~i~L~   67 (148)
T 1u5f_A           14 LPFVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQ-QKGEFAID   67 (148)
T ss_dssp             CSSEEEEEEEEEECCCSSCSS---CSEEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             CCCccEEEEEEEeCCCCCCcC---CCceeEEEEEECCEEEEEcCCCCcc-cceEEEcC
Confidence            478899999999987543222   4999999999999999999887543 47887663

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.22  E-value=1.1e-11  Score=87.97  Aligned_cols=50  Identities=20%  Similarity=0.273  Sum_probs=39.3

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeee----cCCcccccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYD----TDSEIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk----~~~ek~~~kG~I~~   95 (108)
                      .+++.++|||+|+|+...      ++||+|||||+...|.||+    .+.+.. ..|.|.+
T Consensus         5 p~n~~~~G~L~KqG~~~~------K~WKrRwFVL~~~~LyYfk~~~~~~~~~~-p~G~I~L   58 (126)
T 1wi1_A            5 SSGMKHSGYLWAIGKNVW------KRWKKRFFVLVQVSQYTFAMCSYREKKAE-PQELLQL   58 (126)
T ss_dssp             CCCEEEEEEEEEECSSSC------CSCEEEEEEEEEEETTEEEEEECCSSSSC-CSEEEEC
T ss_pred             CCCCceeEEEEEeCCCcc------cccceEEEEEeCCEEEEEEcccccccCCC-CceEEEC
Confidence            356789999999998432      5999999999999999998    554433 3677754

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.22  E-value=1.3e-11  Score=80.21  Aligned_cols=45  Identities=29%  Similarity=0.496  Sum_probs=36.9

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc-cccceEEec
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI-FLSGIRLSD   95 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek-~~~kG~I~~   95 (108)
                      .+|||.|+|+..       ++||+|||||++..|.||+++.+. ..++|.|++
T Consensus         1 ~eG~L~K~g~~~-------k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L   46 (103)
T 3rcp_A            1 MEGVLYKWTNYL-------TGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKM   46 (103)
T ss_dssp             CEEEEEEECCTT-------TCEEEEEEEEETTEEEEESSCC---CCCSCEEEG
T ss_pred             CceEEEEccCCC-------CCeeceEEEEECCEEEEEecCCcccCCcccEEEe
Confidence            389999999775       599999999999999999998753 235788876

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.22  E-value=2.9e-11  Score=80.91  Aligned_cols=50  Identities=28%  Similarity=0.471  Sum_probs=40.7

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ...++++|||.|++....      ++||+|||||+...|.||+.+.+.. .+|.|++
T Consensus        18 ~~~~~~~G~L~K~~~~~~------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L   67 (128)
T 2dkp_A           18 NAPVVRRGWLYKQDSTGM------KLWKKRWFVLSDLCLFYYRDEKEEG-ILGSILL   67 (128)
T ss_dssp             TSCCCEEEEEEEECCSSS------CCEEEEEEEEETTEEEEESSTTCCS-EEEEECG
T ss_pred             CCCcEEEEEEEEeCCCCC------CCceeEEEEEeCCEEEEECCCCCcc-cceEEEc
Confidence            567889999999987322      6999999999999999999876553 3677765

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.22  E-value=7.2e-12  Score=84.68  Aligned_cols=50  Identities=18%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             ccceeeeeeeEee--cCCccccccCCCCceeEEEEeCCCceeeeecCCc--ccccceEEec
Q psy17477         39 SDDILRQGFLIKR--SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE--IFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Kr--g~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e--k~~~kG~I~~   95 (108)
                      ...++++|||.|+  |.+.       ++||+|||||+...|.||+.+.+  ...++|.|++
T Consensus         2 ~~~v~~~G~L~K~~~~~~~-------~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L   55 (134)
T 2y7b_A            2 NSSVEERGFLTIFEDVSGF-------GAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINL   55 (134)
T ss_dssp             CCCCCEEEEEEEEEEETTE-------EEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEG
T ss_pred             CCCceEEeeEEEEcCCCCC-------CCcEEEEEEEECCEEEEECCCCcccccCceEEEEh
Confidence            3568899999999  6555       59999999999999999996543  1234788765

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.21  E-value=2e-11  Score=81.83  Aligned_cols=51  Identities=22%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|+|...       ++||+|||||+...|.||+.+.+.. .+|.|++-.
T Consensus        15 ~~~~~~~G~L~K~g~~~-------~~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L~~   65 (126)
T 1fao_A           15 PSLGTKEGYLTKQGGLV-------KTWKTRWFTLHRNELKYFKDQMSPE-PIRILDLTE   65 (126)
T ss_dssp             CCTTCEEEEEEEECSSS-------CCEEEEEEEEETTEEEEESSTTCSS-CSEEEEGGG
T ss_pred             CCCccEEEEEEEcCCCC-------CCcccEEEEEECCEEEEeCCCCCCC-ceeEEEccc
Confidence            56788999999999755       5999999999999999999876543 478877643

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.20  E-value=6.7e-12  Score=85.87  Aligned_cols=39  Identities=15%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...++++|||.|++...       ++||+|||||+.+.|.||+.+.
T Consensus         9 ~~~~~k~G~L~K~g~~~-------k~Wk~RwfVL~~~~L~yyk~~~   47 (124)
T 2w2x_D            9 KDEHKQQGELYMWDSID-------QKWTRHFCAIADAKLSFSDDIE   47 (124)
T ss_dssp             ----CCEEEEEEEETTT-------TEEEEEEEEEETTEEEEEEEHH
T ss_pred             hhhcceeEEEEEECCCC-------CCceEeEEEEECCEEEEEcccc
Confidence            45778999999999765       5999999999999999999753

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=82.81  Aligned_cols=52  Identities=21%  Similarity=0.232  Sum_probs=41.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCC--CceeeeecCCcc-cccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT--KHLIYYDTDSEI-FLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~--~~LsYYk~~~ek-~~~kG~I~~l~   97 (108)
                      ...++++|||.|++...       ++||+|||||+.  ..|.||+.+.+. ..++|.|++-.
T Consensus         5 ~~~~~~~G~L~K~~~~~-------~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~   59 (120)
T 2d9x_A            5 SSGENVYGYLMKYTNLV-------TGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAG   59 (120)
T ss_dssp             CSCCCCEEEEEEEEETT-------TEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTT
T ss_pred             CCCCcEEEEEEecCCCC-------CCceEEEEEEECCCCEEEEEecCcccCCCccceEEcce
Confidence            35677999999999655       599999999994  799999987653 23588887644

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.20  E-value=1.4e-11  Score=99.38  Aligned_cols=51  Identities=20%  Similarity=0.600  Sum_probs=43.9

Q ss_pred             cccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        38 ~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      +..+++++|||.|+|....      ++||+|||||++..|.||+++.+.. ++|.|.+
T Consensus       265 l~~~~~k~G~L~K~g~~~~------k~WKkRwFVL~~~~L~YYk~~~d~~-~~G~I~L  315 (386)
T 3lju_X          265 LSRNYLKEGYMEKTGPKQT------EGFRKRWFTMDDRRLMYFKDPLDAF-ARGEVFI  315 (386)
T ss_dssp             SSCCCSEEEEEEECCTTSC------SCCEEEEEEEETTEEEEESSTTCSB-CSEEEEC
T ss_pred             cccccceeeeEEEECCCCC------CCCcccEEEEECCEEEEEecCCCcc-cceEEEe
Confidence            4678899999999997752      5999999999999999999987653 4899987

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.17  E-value=3.5e-11  Score=83.29  Aligned_cols=47  Identities=26%  Similarity=0.416  Sum_probs=37.6

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc--ccceEEec
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF--LSGIRLSD   95 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~--~~kG~I~~   95 (108)
                      ++++|||.||++..       ++|++|||||+++.|.||+.+..++  .+.|+|.+
T Consensus         6 ~~k~G~L~Kk~~~~-------k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L   54 (120)
T 4a6h_A            6 EIKSGFLERRSKFL-------KSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLAL   54 (120)
T ss_dssp             CSEEEEEEEEETTT-------TEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEG
T ss_pred             ccEEEEEEEcCCCC-------CCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEEC
Confidence            89999999999866       5999999999999999999765221  23466554

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.13  E-value=5.2e-11  Score=82.33  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             ccceeeeeeeEeecCCccc-cccCCCCceeEEEEeCCC-----ceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKR-FSTSNNNYKQRWFVLTTK-----HLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~-~~~~~~nwK~RwFVLt~~-----~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|++.+.+. ...  ++||+|||||+..     .|.||+...+....+|.|++-
T Consensus        15 ~~~~~~~G~L~K~~~~~~~~~~~--k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~   76 (150)
T 1wg7_A           15 KGGITKHGWLYKGNMNSAISVTM--RSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLD   76 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHH--SSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTT
T ss_pred             CCCeeEEEEEEEecCCccccccc--cCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecc
Confidence            4678999999999853210 122  5999999999986     999999886223357888754

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.09  E-value=8.7e-11  Score=88.07  Aligned_cols=56  Identities=30%  Similarity=0.551  Sum_probs=45.9

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ...++++|||.|+|...+.++.  ++||+|||||+...|.||+++.+.. .+|.|++-.
T Consensus        55 ~~~~~k~G~L~K~g~~~~~~~~--k~WkkRwfvL~~~~L~Yyk~~~~~~-~~g~I~L~~  110 (228)
T 3tfm_A           55 KQEALKQGWLHNNGGGSSTLSR--RNWKKRWFVLRQSKLMYFENDSEEK-LKGTVEVRS  110 (228)
T ss_dssp             CCCSSEEEEEEECGGGCSSSCG--GGCEEEEEEECSSEEEEESSTTCCS-EEEEEEGGG
T ss_pred             CCCcceEEEEEEECCCcCCccc--CCceEEEEEEeCCEEEEEeCCCCcc-eeEEEEcCC
Confidence            5678999999999987645555  7999999999999999999987643 478887644

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.09  E-value=1.7e-10  Score=79.98  Aligned_cols=52  Identities=19%  Similarity=0.175  Sum_probs=37.4

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeC---CCceeeeecC----CcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT---TKHLIYYDTD----SEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt---~~~LsYYk~~----~ek~~~kG~I~~l~   97 (108)
                      +....++|||.|+|.+..      ++||+|||||+   ...|.||+++    .+. ...|.|++-.
T Consensus        12 ~~~~~~~G~L~K~g~~~~------k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~-~~~G~I~L~~   70 (126)
T 1v5p_A           12 DRQNRICGFLDIEDNENS------GKFLRRYFILDTQANCLLWYMDNPQNLAVGA-GAVGSLQLTY   70 (126)
T ss_dssp             CCCCCEECCEEEECTTCS------SCEEEEEEEEETTTTEEEEESSCTTTSCTTC-CCSEEEETTT
T ss_pred             cCCCceEEEEEEeCCCCC------CCccceEEEEecCCCCEEEEECCCCCCCCCc-eeeEEEECCC
Confidence            455678999999984332      69999999999   4567777873    333 3478887643

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.08  E-value=9e-11  Score=87.59  Aligned_cols=54  Identities=20%  Similarity=0.423  Sum_probs=42.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++++|||.|+++..+ +..  ++||+|||||+...|.||+.+.+.. ++|.|++-
T Consensus       103 l~~v~k~G~L~Kkg~~~~-~~~--k~WkkRwfVL~~~~L~Yyk~~~~~~-p~g~I~L~  156 (211)
T 1u5e_A          103 LPFVIKAGYLEKRRKDHS-FLG--FEWQKRWCALSKTVFYYYGSDKDKQ-QKGEFAID  156 (211)
T ss_dssp             CSSEEEEEEEEEEEHHHH-TTT--CCCEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             cCCccEEEEEEEECCCCC-cCC--CCcEeEEEEEECCEEEEEcCCCCcc-ceEEEEeC
Confidence            357899999999986422 112  5999999999999999999887643 47887764

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.07  E-value=2.3e-10  Score=76.93  Aligned_cols=50  Identities=14%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCC
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ++|||.||+.+++ .+.  ++||+|||||+.+.|.||+.+.+.. ..|.|++..
T Consensus         2 keG~L~kK~g~~~-~~~--k~Wk~rwfvL~~~~L~~yk~~~~~~-p~~~i~l~~   51 (112)
T 3cxb_B            2 KEGMLHYKAGTSY-LGK--EHWKTCFVVLSNGILYQYPDRTDVI-PLLSVNMGG   51 (112)
T ss_dssp             EEEEEEECCSCCC-SSC--CCCEEEEEEEETTEEEEESSSSCCS-CSEEEETTC
T ss_pred             ceEEEEEeCCCCC-CCC--CCceEEEEEEECCEEEEECCCCCCC-ccceEEecC
Confidence            7999998866543 333  6999999999999999999886553 367776653

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.05  E-value=1.2e-10  Score=76.75  Aligned_cols=38  Identities=21%  Similarity=0.487  Sum_probs=32.9

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ...++++|||.|+  ..       ++||+|||||+.+.|.||+.+.+
T Consensus         5 ~~~~~~~G~L~K~--~~-------k~Wk~RwfvL~~~~L~yyk~~~~   42 (107)
T 2cof_A            5 SSGLETSSYLNVL--VN-------SQWKSRWCSVRDNHLHFYQDRNR   42 (107)
T ss_dssp             CCCCTTCCEEEEE--ET-------TEEEEEEEEECSSCEEEECSSTT
T ss_pred             CCCCcEeEEEEEe--cC-------CCcceEEEEEECCEEEEEeCCcc
Confidence            4667899999999  22       69999999999999999998865

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.02  E-value=2.8e-10  Score=91.76  Aligned_cols=50  Identities=24%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEe--CCCceeeeecCCcccccceEEecCC
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVL--t~~~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ..-+++|||+|||+..       ++||+|||||  +++.|.||+.+.++. ++|.|.+-.
T Consensus       144 ~~~~keG~L~KrG~~~-------k~WkrRwFVL~~~~~~L~Yy~~~~~~~-p~g~I~L~~  195 (386)
T 3lju_X          144 SAGYREGFLWKRGRDN-------GQFLSRKFVLTEREGALKYFNRNDAKE-PKAVMKIEH  195 (386)
T ss_dssp             HSSEEEEEEEEECSSS-------CCEEEEEEEEETTTTEEEEEC-----C-CSEEEEGGG
T ss_pred             cccccccceeeecccc-------CCceEEEEEEEcCCCEEEEECCCCccC-cccEEEeec
Confidence            4568999999999887       5999999999  899999999987654 589887643

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.00  E-value=5.2e-10  Score=76.98  Aligned_cols=42  Identities=26%  Similarity=0.589  Sum_probs=32.8

Q ss_pred             ccceeeeeeeEeec---CCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         39 SDDILRQGFLIKRS---QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        39 ~~~vlkeG~L~Krg---~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...++|+|||.|+.   +|++ . .  ++|++|||||+.+.|.||+.++
T Consensus         9 ~~~~~k~G~L~kk~~~~~G~~-~-~--k~Wk~rwfvL~~~~L~yykd~~   53 (129)
T 2p0d_A            9 SHEVEKSGLLNMTKIAQGGRK-L-R--KNWGPSWVVLTGNSLVFYREPP   53 (129)
T ss_dssp             CCSEEEEEEEEEEEEEETTEE-C-C--CCCEEEEEEEESSEEEEESCC-
T ss_pred             CcceeEEEEEEEeeeccCCCc-C-C--CCceEEEEEEeCCEEEEEcCcc
Confidence            46788999999961   2322 1 2  5999999999999999999884

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=98.98  E-value=3e-10  Score=89.95  Aligned_cols=48  Identities=21%  Similarity=0.381  Sum_probs=35.9

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeC-CCceeeeecCCcccccceEEec
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt-~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ..++|+|||+|+|+..       ++||+|||||+ .+.|.||+...+.. .+|.|++
T Consensus         4 ~~v~keG~L~K~g~~~-------k~Wk~r~fvL~~~~~l~yyk~~~~~~-~~~~i~l   52 (446)
T 4ejn_A            4 VAIVKEGWLHKRGEYI-------KTWRPRYFLLKNDGTFIGYKERPQDV-DQREAPL   52 (446)
T ss_dssp             CCEEEEEEEEEEETTT-------TEEEEEEEEEETTSBEEEESSCC--------CCC
T ss_pred             ceEEEEeeEEeecccc-------ccccceEEEEeeCCEEEEEecCCCCC-ccCcccc
Confidence            4699999999999887       59999999997 89999999886543 2455443

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=98.96  E-value=3.7e-10  Score=79.62  Aligned_cols=52  Identities=27%  Similarity=0.312  Sum_probs=29.9

Q ss_pred             ceeeeeeeEeec----CCccc-cccCCCCceeEEEEeCCCceeeeecCCcc-cccceEEe
Q psy17477         41 DILRQGFLIKRS----QNKKR-FSTSNNNYKQRWFVLTTKHLIYYDTDSEI-FLSGIRLS   94 (108)
Q Consensus        41 ~vlkeG~L~Krg----~~~k~-~~~~~~nwK~RwFVLt~~~LsYYk~~~ek-~~~kG~I~   94 (108)
                      +++++|||.++.    +++|. ...  ++||+|||||+...|.||+.+.+. ...+|.|+
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~--k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~   59 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSI--RPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQP   59 (168)
T ss_dssp             -CCEEEEEEEEECC--------------CCEEEEEEEETTEEEEESCTTCC--------C
T ss_pred             CCcEEEEEeeeeecccCCcccCCCC--CCceEEEEEEeCCEEEEEECCcccccccCCceE
Confidence            578999999542    11111 112  699999999999999999988541 12355543

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=98.95  E-value=7.7e-10  Score=87.78  Aligned_cols=48  Identities=25%  Similarity=0.468  Sum_probs=40.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ..+++|||.|+|+..       ++||+|||||+...|.||+.+.+.. ++|.|++-
T Consensus       212 ~~~k~G~L~K~g~~~-------k~WkkRwFVL~~~~L~Yyk~~~~~~-p~G~I~L~  259 (347)
T 2r09_A          212 NPDREGWLLKLGGRV-------KTWKRRWFILTDNCLYYFEYTTDKE-PRGIIPLE  259 (347)
T ss_dssp             CCCEEEEEEEECSSS-------CCEEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             ccccCCeeEecCCCc-------ccceeEEEEEcCCEEEEEcCCCccC-CcEEEEcC
Confidence            458999999999765       5999999999999999999886553 47887653

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=98.89  E-value=1.6e-09  Score=73.53  Aligned_cols=36  Identities=28%  Similarity=0.547  Sum_probs=28.6

Q ss_pred             cceeeeeeeEeecC--CccccccCCCCceeEEEEeCC-Cceeeeec
Q psy17477         40 DDILRQGFLIKRSQ--NKKRFSTSNNNYKQRWFVLTT-KHLIYYDT   82 (108)
Q Consensus        40 ~~vlkeG~L~Krg~--~~k~~~~~~~nwK~RwFVLt~-~~LsYYk~   82 (108)
                      ..++++|||.|+++  ..       ++||+|||||+. ..|.||+.
T Consensus         2 ~~~~k~G~L~K~~g~~~~-------k~WkkRwFvL~~~~~l~Y~~~   40 (128)
T 2rlo_A            2 AIPIKQSFLLKRSGNSLN-------KEWKKKYVTLSSNGFLLYHPS   40 (128)
T ss_dssp             CCEEEEEEEEEECSCSTT-------CCEEEEEEEEETTTEEEEESS
T ss_pred             CcceeEEEEEEecCCCcc-------CCccEEEEEEeCCCEEEEecc
Confidence            35789999999953  33       699999999997 56777765

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=98.87  E-value=1.6e-09  Score=81.57  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEe
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLS   94 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~   94 (108)
                      ..++|||+|+|.+.       ++||+|||||+++.|.||+...+.. .+|.|.
T Consensus       168 p~~~G~L~k~~~~~-------k~WkkR~fvL~~~~L~yyk~~~~~~-~~~~i~  212 (291)
T 3tca_A          168 PELEGALYLKEDGK-------KSWKRRYFLLRASGIYYVPKGKTKT-SRDLAC  212 (291)
T ss_dssp             CCCEEEEEEECTTS-------SCEEEEEEEECSSEEEECCTTCCSS-TTTCEE
T ss_pred             CceEEEEEEeCCCC-------CCceEEEEEEeCCEEEEEecCcccc-ccCcee
Confidence            35799999999887       5999999999999999999876543 245443

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.86  E-value=1.3e-09  Score=73.13  Aligned_cols=45  Identities=18%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             ccceeeeeeeEeecCC---ccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         39 SDDILRQGFLIKRSQN---KKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~---~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      .+.++++|||.|++..   -++.+.  ++||+|||||+...|.||+.+.+
T Consensus         5 ~~~v~~eG~L~kk~~~~~~gk~~~~--~~Wk~rwfvL~~~~L~yyk~~~~   52 (123)
T 1wjm_A            5 SSGEQMEGMLCRKQEMEAFGKKAAN--RSWQNVYCVLRRGSLGFYKDAKA   52 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSC--CCCEEEEEEEETTEEEEESSHHH
T ss_pred             CCCeEEEEEEEEEEEEeCCCccCCC--CCccEEEEEEECCEEEEEEcccc
Confidence            4677899999998752   111233  69999999999999999998764

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.86  E-value=3.2e-09  Score=72.63  Aligned_cols=48  Identities=13%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCC---ceeeeecCCcccccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK---HLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~---~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ....+..|||.|++. .       ++||+|||||+.+   .|.||+.+.+.+ ..|.|++
T Consensus         5 ~~~~~~~G~L~k~~~-~-------~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~-p~g~I~L   55 (112)
T 2coc_A            5 SSGSLLCGPLRLSES-G-------ETWSEVWAAIPMSDPQVLHLQGGSQDGR-LPRTIPL   55 (112)
T ss_dssp             CSSSSSEEEEEEESS-S-------SCEEEEEEECCTTCTTCEEEECCTTCSS-SCSEECG
T ss_pred             cCCceEEEEEEecCC-C-------CCceEEEEEEECCCccEEEEECCCCccC-cceEEEc
Confidence            455667899999764 2       5999999999985   588999887654 3566665

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=98.82  E-value=3.9e-09  Score=81.32  Aligned_cols=55  Identities=18%  Similarity=0.338  Sum_probs=36.3

Q ss_pred             ccceeeeeeeEeec-------CCccccccCCCCceeEEEEeCCCceeeeecCC-----cccccceEEec
Q psy17477         39 SDDILRQGFLIKRS-------QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS-----EIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg-------~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~-----ek~~~kG~I~~   95 (108)
                      ...++|+|||.++.       ++...++.  ++||+|||||+.+.|.||+.++     ......|.|++
T Consensus         8 ~~~v~K~G~L~~k~~~~~~K~g~~~~~~~--K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L   74 (263)
T 3a8p_A            8 QGVVRKAGWLFFKPLVTLQKERKLELVAR--RKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFA   74 (263)
T ss_dssp             --CEEEEEEEEEEEEEEEEGGGEEEECTT--CCCEEEEEEEETTEEEEESSCCC------CCCSEEEEC
T ss_pred             CCCeEEEEEeeecccccccCCCCccCccC--CCceEEEEEEcCCEEEEEecCcccccccccCccceEEc
Confidence            57899999999422       12111223  7999999999999999999852     11223677664

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=98.82  E-value=3.2e-09  Score=68.57  Aligned_cols=38  Identities=24%  Similarity=0.538  Sum_probs=30.4

Q ss_pred             eeeeeEeec----CCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         44 RQGFLIKRS----QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        44 keG~L~Krg----~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      .+|||.|++    .+++ ...  ++||+|||||+.+.|.||+.+.
T Consensus         1 ~eG~L~kk~~~~~~gk~-~~~--~~Wk~rwfvL~~~~L~yyk~~~   42 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKK-ASS--RSWHNVYCVINNQEMGFYKDAK   42 (106)
T ss_dssp             CEEEEEEEEEECSTTCB-CSC--CCCEEEEEEEETTEEEEESSHH
T ss_pred             CccEEEEEEEEeCCCcc-CCC--CChhEEEEEEECCEEEEEeCCc
Confidence            389999998    2322 223  6999999999999999999775

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=98.80  E-value=2.8e-09  Score=82.31  Aligned_cols=47  Identities=26%  Similarity=0.432  Sum_probs=36.7

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCC-------ceeeeecCCcc----cccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK-------HLIYYDTDSEI----FLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~-------~LsYYk~~~ek----~~~kG~I~~l   96 (108)
                      ..+++++|||.|+    |       +||+|||||+.+       .|.||+++++.    ...+|.|++-
T Consensus         7 ~~~v~k~G~L~K~----K-------~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~   64 (264)
T 1qqg_A            7 FSDVRKVGYLRKP----K-------SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLE   64 (264)
T ss_dssp             --CEEEEEEEECT----T-------TCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGG
T ss_pred             CCCccEEEEEEEC----C-------CCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEee
Confidence            4678999999998    2       999999999988       99999987650    1347887753

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=98.77  E-value=8.4e-09  Score=69.45  Aligned_cols=45  Identities=11%  Similarity=0.346  Sum_probs=35.6

Q ss_pred             ccceeeeeeeEeecC----CccccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         39 SDDILRQGFLIKRSQ----NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~----~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      ...+.++|||.|+..    +++ .+.  ++||+|||||++..|.||+.+.+.
T Consensus         5 ~~~v~k~G~L~rK~~~~~~gkk-~~~--~~Wk~rw~vL~~~~L~~yk~~~~~   53 (122)
T 1dro_A            5 GAGEGHEGYVTRKHEWDSTTKK-ASN--RSWDKVYMAAKAGRISFYKDQKGY   53 (122)
T ss_dssp             CSSSSEEEEEEEECSCCCCCCT-TCC--CCCEEEEEEESSSCCBEESSSSHH
T ss_pred             CCceEEEEEEEEEEEEeCCCcc-CCC--CCccEEEEEEECCEEEEEeCCccc
Confidence            356779999999865    322 234  699999999999999999988743

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=98.75  E-value=1e-08  Score=70.01  Aligned_cols=44  Identities=16%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             ccceeeeeeeEeecC---CccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         39 SDDILRQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~---~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ..++.|+|+|.++..   |++. +.  .+|++|||||+++.|.||+.+++
T Consensus         5 ~~~v~keG~L~rK~~~~~gkk~-~~--r~W~~~w~VL~~~~L~~yKd~~~   51 (124)
T 3pp2_A            5 TKTLDKAGVLHRTKTADKGKRL-RK--KHWSASWTVLEGGVLTFFKDSKT   51 (124)
T ss_dssp             ----CEEEEEEEEEEEETTEEC-SS--CCCEEEEEEEETTEEEEESCSBC
T ss_pred             CCcEEEEEEEEEEEeccCCccC-CC--CCceEEEEEEECCEEEEEecCcc
Confidence            578999999999732   5443 33  59999999999999999997764

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=98.69  E-value=1.6e-08  Score=80.29  Aligned_cols=40  Identities=10%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecC
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD   83 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~   83 (108)
                      ..++++|||.|+|...  +.+  ++||+|||||+.+.|.||+..
T Consensus       276 ~~~~k~G~L~K~~~~~--~~~--~~WkkRwfvL~~~~L~y~k~~  315 (385)
T 2q13_A          276 NLTRKAGYLNARNKTG--LVS--STWDRQFYFTQGGNLMSQARG  315 (385)
T ss_dssp             CCSCCEEEEEEC------------CCEEEEEEEETTEEEEECSS
T ss_pred             CCccEEEEEEEecCCC--CCc--CCceeEEEEEECCEEEEecCC
Confidence            4678999999998651  112  589999999999999999984

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=98.60  E-value=2.3e-08  Score=68.75  Aligned_cols=50  Identities=22%  Similarity=0.571  Sum_probs=38.4

Q ss_pred             eeeeeEe--ecCCccccccCCC-CceeEEEEeCCCceeeeecCCcc--cccceEEecCCCCccc
Q psy17477         44 RQGFLIK--RSQNKKRFSTSNN-NYKQRWFVLTTKHLIYYDTDSEI--FLSGIRLSDLPDQIFH  102 (108)
Q Consensus        44 keG~L~K--rg~~~k~~~~~~~-nwK~RwFVLt~~~LsYYk~~~ek--~~~kG~I~~l~d~~f~  102 (108)
                      .||||.+  +|..+       + +|++|||||+...|.||+.+.++  ....|.|++  |..|+
T Consensus         3 ~eGwl~~pk~~~~~-------k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl--~~~~~   57 (117)
T 2rov_A            3 LEGWLSLPVRNNTK-------KFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDI--DKLFH   57 (117)
T ss_dssp             SEEEEECCCCSSSS-------CCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECG--GGEEE
T ss_pred             eEEEEEeecCCCcc-------CCCcEEEEEEEECCEEEEEECCCCcccCCceEEEEC--cccEE
Confidence            4899997  55444       5 99999999999999999987543  234788876  66665

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.50  E-value=6e-08  Score=77.44  Aligned_cols=40  Identities=15%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             ccceeeeeeeEeec---CCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         39 SDDILRQGFLIKRS---QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        39 ~~~vlkeG~L~Krg---~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ...+.|+|||+||+   ...       ++|++|||||+...|.||+....
T Consensus       298 ~~~~~k~G~L~k~~~~g~~~-------~~W~rrwfvl~~~~l~y~~~~~~  340 (407)
T 4h8s_A          298 RNLIQKAGYLNLRNKTGLVT-------TTWERLYFFTQGGNLMCQPRGAV  340 (407)
T ss_dssp             CSCSCCEEEEEEEEECSSSC-------EEEEEEEEEECSSCEECCCTTCS
T ss_pred             CCcceeeceeeeeccCCCCC-------CCceEEEEEEECCEEEEEeCCCC
Confidence            34567999999984   222       59999999999999999996653

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.45  E-value=2.2e-07  Score=69.46  Aligned_cols=40  Identities=23%  Similarity=0.505  Sum_probs=33.5

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      .+....+|||.|+|...       ++||+|||||+...+.||+...+
T Consensus        18 ~~~~~~~g~l~~~~~~~-------~~w~~rw~vl~~~~~~~~~~~~~   57 (228)
T 3tfm_A           18 PGSPYFHSFLYMNGGLM-------NSWKRRWCVLKDETFLWFRSKQE   57 (228)
T ss_dssp             ---CCEEEEEEECCTTT-------CCCEEEEEEEETTEEEEESSCCC
T ss_pred             CCCCceEEEEeecCccc-------ccceEEEEEEeCCEEEEeccCCC
Confidence            56778999999998887       59999999999999999997653

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=98.42  E-value=6.2e-07  Score=65.34  Aligned_cols=54  Identities=22%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccce--------EEecCCCCccc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI--------RLSDLPDQIFH  102 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG--------~I~~l~d~~f~  102 (108)
                      ...+|++|++.||.+         ..||+|||+||.....||-++..+. .||        +++.++|+.|-
T Consensus        49 ge~Ilk~G~v~KrkG---------l~~kkR~liLT~~PrL~Yvdp~~~~-~KGeIpls~~l~ve~k~~~~F~  110 (151)
T 1w1g_A           49 NNLILKMGPVDKRKG---------LFARRRQLLLTEGPHLYYVDPVNKV-LKGEIPWSQELRPEAKNFKTFF  110 (151)
T ss_dssp             TCCEEEEEEEEEEET---------TEEEEEEEEEETTTEEEEEETTTTE-EEEEECCCTTCEEEESSSSEEE
T ss_pred             CCcEEEEEEEEeccc---------CcceeEEEEEcCCceEEEEcCcccc-ccceEecCCCeeEEEcCCCEEE
Confidence            578999999999642         2589999999999999999886543 366        56777777664

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=98.34  E-value=1.1e-06  Score=61.87  Aligned_cols=37  Identities=24%  Similarity=0.609  Sum_probs=26.7

Q ss_pred             eeeeeEee---cCCccccccCCCCceeEEEEeCCCceeeeecC
Q psy17477         44 RQGFLIKR---SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD   83 (108)
Q Consensus        44 keG~L~Kr---g~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~   83 (108)
                      .+|+|.++   .+|++. ..  ++|++|||||+.+.|.||+..
T Consensus         3 ~~G~L~rk~llK~G~k~-~~--ksWkr~W~vL~g~~L~yf~~~   42 (126)
T 2dtc_A            3 MEGPLRRKTLLKEGRKP-AL--SSWTRYWVVLSGATLLYYGAK   42 (126)
T ss_dssp             EEEEEEEEEEEBTTBCC-SS--CCCEEEEEEEETTEEEEEEBS
T ss_pred             eeeeeeeeehhhcCCcc-cc--cCcccEEEEEeCCEEEEEccc
Confidence            36666653   233321 12  699999999999999999976

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=4.3e-06  Score=59.46  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=36.3

Q ss_pred             CCcccceeeeeeeEeecCCccccccCCCCceeEEEEeCC------CceeeeecCCc
Q psy17477         36 DLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT------KHLIYYDTDSE   85 (108)
Q Consensus        36 ~~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~------~~LsYYk~~~e   85 (108)
                      ..|..+++|+|+|.++.+++  |+.   .||+|||||.+      .-|.||++++.
T Consensus         6 ~~m~e~~vk~G~L~~q~q~~--fgk---KWrk~w~vLy~~S~~GvaRLE~yd~~ek   56 (127)
T 2d9w_A            6 SGMGDGAVKQGFLYLQQQQT--FGK---KWRRFGASLYGGSDCALARLELQEGPEK   56 (127)
T ss_dssp             CCSCCCSSEEEEEEECBCSS--SSC---BCCEEEEEEECCSSSSCCEEEEECCCSC
T ss_pred             ccccCccccceEEEecccch--hhh---hhheeEEEEecCCCCCceeeeeeeccCc
Confidence            35689999999999999854  455   49999999975      45889998753

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=2.7e-06  Score=61.10  Aligned_cols=39  Identities=26%  Similarity=0.508  Sum_probs=31.2

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      +.+||-.++..+  ++.  ++||+|||||+.+.|+|||++++.
T Consensus        11 l~~~l~~~~pkk--~tl--K~~KrrWFvlk~~~L~YyK~kee~   49 (137)
T 2ys3_A           11 LKDHLRIFRPRK--LTL--KGYRQHWVVFKETTLSYYKSQDEA   49 (137)
T ss_dssp             EECCCEECCTTS--CCS--SSSCCCEEEECSSCEEEESSTTTT
T ss_pred             hhHHHHhhCccc--ccc--ccceeEEEEEeCCEEEEECCchhc
Confidence            468888765433  455  799999999999999999988764

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=97.92  E-value=9.5e-06  Score=62.86  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      .-.+|+|++|+.++       +.||+|||+|+.+.|.||+..+
T Consensus       132 P~~~G~L~~ke~~~-------K~WkkRyfvLr~sgLy~~~k~~  167 (256)
T 3hk0_A          132 PEIQGFLHVKELGK-------KSWKKLYVCLRRSGLYCSTKGT  167 (256)
T ss_dssp             EEEEEEEEEECTTS-------SCEEEEEEEEETTEEEEESSTT
T ss_pred             CcceeEEEEecCCC-------CcceEEEEEEeCCEEEEEecCC
Confidence            34799999998887       5999999999999998877554

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=97.82  E-value=1.4e-05  Score=62.61  Aligned_cols=44  Identities=27%  Similarity=0.533  Sum_probs=32.4

Q ss_pred             ccceeeeeeeEee-----cCCccc--cccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         39 SDDILRQGFLIKR-----SQNKKR--FSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        39 ~~~vlkeG~L~Kr-----g~~~k~--~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...+.++|+|.++     +.+++.  .+.  .+|++|||||+...|.||+...
T Consensus         8 ~~~v~k~G~L~rK~~l~~~k~~K~~~~~~--r~Wkk~w~VLkg~~L~fYKde~   58 (279)
T 3a8n_A            8 QGTVRKAGALAVKNFLVHKKNKKVESATR--RKWKHYWVSLKGCTLFFYETDG   58 (279)
T ss_dssp             --CCSCEEEEEEEEEEEEETTTEEECCCC--CCCEEEEEEEETTEECCBCCC-
T ss_pred             CCceeEEEEEEEEEEecccCCcccCCccC--CCCeEEEEEEeCCEEEEEeccc
Confidence            4678899999875     333222  234  7999999999999999999775

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=97.78  E-value=1.9e-05  Score=62.06  Aligned_cols=35  Identities=23%  Similarity=0.483  Sum_probs=28.0

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      -.+|+|++++.++       +.|++|||||+.+.|.||+..+
T Consensus       159 e~~G~L~~k~~~~-------k~WkkRyfvLr~sgLyy~~K~~  193 (281)
T 4gmv_A          159 EIEGVLWLKDDGK-------KSWKKRYFLLRASGIYYVPKGK  193 (281)
T ss_dssp             CCEEEEEEECTTS-------SCEEEEEEEECSSCEEEC----
T ss_pred             ccEEEEEEECCCC-------CCCeEEEEEEeCCEEEEEeCCC
Confidence            3699999999887       5999999999999998887544

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=97.76  E-value=4.5e-05  Score=56.65  Aligned_cols=38  Identities=18%  Similarity=0.433  Sum_probs=30.6

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ..+||..-.  .++++.  +.||+||||+....|+|||++.+
T Consensus        49 L~dyLk~~~--pk~~tL--KgyKryWFv~kd~~LsyYKskEe   86 (173)
T 4f7h_A           49 LADYIKVFK--PKKLTL--KGYKQYWCTFKDTSISCYKSKEE   86 (173)
T ss_dssp             EEEEEEEEC--CBTTBC--CCCEEEEEEEETTEEEEESCGGG
T ss_pred             hHhHHHhhc--chhccc--ccceeEEEEEeCCEEEEEcCHhH
Confidence            568886522  235667  89999999999999999999876

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.72  E-value=2.2e-05  Score=57.05  Aligned_cols=32  Identities=22%  Similarity=0.550  Sum_probs=29.2

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeee
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYD   81 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk   81 (108)
                      +|+|+|.+++...       +.|.+|||||+++.|.|++
T Consensus         2 ~k~G~L~~~~~~~-------~~w~~~~fvL~~~~L~y~~   33 (150)
T 2fjl_A            2 IKNGILYLEDPVN-------HEWYPHYFVLTSSKIYYSE   33 (150)
T ss_dssp             CEEEEEEEEETTT-------TEEEEEEEEEETTEEEECC
T ss_pred             CcceEEEeecCCC-------CCceEeEEEEECCEEEEEe
Confidence            6899999998665       6999999999999999988

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.65  E-value=0.0001  Score=52.14  Aligned_cols=42  Identities=19%  Similarity=0.391  Sum_probs=37.6

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF   87 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~   87 (108)
                      ++.+||||||++.+...       ++||+++|+|....++||.++.+.+
T Consensus         5 ~s~vlkeGW~VH~t~~d-------~~rKRHYWrLD~K~Itlf~~e~~~~   46 (125)
T 2coa_A            5 SSGTLREGWVVHYSNKD-------TLRKRHYWRLDCKCITLFQNNTTNR   46 (125)
T ss_dssp             CCSCSEEEEEEECCSSS-------CCCEEEEEEECSSEEEEESSSSCSS
T ss_pred             CCceeecceEEEEccCC-------ccccceeeEecCCeEEEEecCCCCc
Confidence            57899999999998877       5999999999999999999887654

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=97.63  E-value=5.9e-05  Score=55.64  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      ..+||..-.  -++++.  ++||+||||+....|+|||++.+.
T Consensus        28 L~dyLk~~~--pkrltL--KgfKryWfv~kDt~LsyYKSkEe~   66 (165)
T 4bbk_A           28 LADYLKLFR--PKKLML--KACKQYWFVFKDTSIAYFKNKELE   66 (165)
T ss_dssp             EEEEEEEEC-----------CCEEEEEEEETTEEEEESSGGGT
T ss_pred             hHhHHHhhc--cccccc--ccceeEEEEEeCCEEEEEcCHHHh
Confidence            468886522  235777  899999999999999999998753

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=0.00069  Score=48.16  Aligned_cols=42  Identities=19%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF   87 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~   87 (108)
                      .+.+||||||++.....       +++|+++++|....+++|.++.+.+
T Consensus         5 ~s~vlkeGWmVH~t~~d-------~~rKRHYWrLD~K~Itlf~~e~~~k   46 (129)
T 2d9z_A            5 SSGMVKEGWMVHYTSRD-------NLRKRHYWRLDSKCLTLFQNESGSK   46 (129)
T ss_dssp             CTTSEEEEEEEEEESSC-------CCCEEEEEEEESSCEEEESCSSCCS
T ss_pred             CCceeecceEEEEccCC-------ccccceeeEecCCeEEEEecCCCCc
Confidence            57899999999988776       5999999999999999999876554

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=95.20  E-value=0.031  Score=49.04  Aligned_cols=42  Identities=31%  Similarity=0.570  Sum_probs=30.9

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF   87 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~   87 (108)
                      .++..|||.....+.-+     ..-|..|||||..+|+||+...++.
T Consensus       539 ~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  580 (772)
T 3zvr_A          539 LVIRKGWLTINNIGIMK-----GGSKEYWFVLTAENLSWYKDDEEKE  580 (772)
T ss_dssp             CEEEEEEEEESSSCCC--------CCEEEEEEESSEEEEESSTTCCC
T ss_pred             cceeeeeeeeccccccc-----CCCccceeeccccccccccchhhhc
Confidence            48999999984433322     3458999999999999999866553

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=92.64  E-value=0.13  Score=39.40  Aligned_cols=49  Identities=22%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             cccceeeeeeeEeecCCccccccCCCCceeEEEEeCC-C------ceeeeecCCccc---ccceEEec
Q psy17477         38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT-K------HLIYYDTDSEIF---LSGIRLSD   95 (108)
Q Consensus        38 ~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~-~------~LsYYk~~~ek~---~~kG~I~~   95 (108)
                      |.+.++.||+...|-.         +.||.||.||++ +      .|.-|++.+++.   +.|.+|.+
T Consensus         5 ~~~~~v~eg~vk~r~~---------KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL   63 (224)
T 3ml4_A            5 MTEAALVEGQVKLRDG---------KKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTL   63 (224)
T ss_dssp             --CCCSEEEEEEEC------------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEE
T ss_pred             cccceeEEEeeeeecC---------CceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeeh
Confidence            5777788999877652         479999999985 1      466787766542   33565544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	6e-12
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	8e-08
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	8e-07
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	2e-06
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	6e-06
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	1e-05
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	1e-05
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	2e-05
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	2e-05
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	3e-05
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	3e-05
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	5e-05
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	5e-05
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	6e-05
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	9e-05
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	2e-04
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	3e-04
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	4e-04
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	5e-04
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	0.003
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	0.003
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	0.004

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 6e-12
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          ++ +   +KRSQ KK+ S    N+K+  F+LT   L YY+ D E
Sbjct: 3  VILESIFLKRSQQKKKTSPL--NFKKCLFLLTVHKLSYYEYDFE 44

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 8e-08
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 42  ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF 101
           +++QG+L K+S++   F    + +++RW V++     YY  +      G  L        
Sbjct: 1   VIKQGYLEKKSKDHSFFG---SEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRM 57

Query: 102 HD 103
             
Sbjct: 58  AP 59

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 8e-07
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
          +++ G+ +K+    K       N+K+R+F L    + Y+ ++ E     +
Sbjct: 3  VIKAGYCVKQGAVMK-------NWKRRYFQLDENTIGYFKSELEKEPLRV 45

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 40  DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
             +++ G+L KR ++          +++RW  L+     YY +D +    G
Sbjct: 102 PFVIKAGYLEKRRKDHSFLGF---EWQKRWCALSKTVFYYYGSDKDKQQKG 149

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 6e-06
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
          S   ++ G+L K+    K       N++QR+FVL  + L YY  + +    G 
Sbjct: 5  SSGPIKMGWLKKQRSIVK-------NWQQRYFVLRAQQLYYYKDEEDTKPQGC 50

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
          ++G+L K+    K        +K RWF L    L Y+          I
Sbjct: 6  KEGYLTKQGGLVK-------TWKTRWFTLHRNELKYFKDQMSPEPIRI 46

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          +S  +++QG+L K+   +K       N+K R FVL       +  D  
Sbjct: 7  LSGTVVKQGYLAKQGHKRK-------NWKVRRFVLRKDPAFLHYYDPS 47

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 42  ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF 101
           I++QG L+K+   +K       N+K R F+L       +  D       +    L   + 
Sbjct: 2   IIKQGCLLKQGHRRK-------NWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVV 54

Query: 102 HDI 104
             +
Sbjct: 55  TSV 57

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD 83
           +++ G+L KR ++          +++RW  L+     YY +D
Sbjct: 8  FVIKAGYLEKRRKDHSFLGF---EWQKRWCALSKTVFYYYGSD 47

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
           +R+G+L+K+             +K  W VL    + +Y   S+    G+
Sbjct: 5  RIREGYLVKKGSVFN-------TWKPMWVVLLEDGIEFYKKKSDNSPKGM 47

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 3e-05
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 43  LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------EIFLSGIRLSDL 96
           ++ G+L K S   KR       +++RW       + YY+ +        I LS I    +
Sbjct: 2   VKSGWLDKLSPQGKR------MFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRV 55

Query: 97  PDQIFHDILVP 107
                 +++  
Sbjct: 56  QGDNKFEVVTT 66

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 5e-05
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 14/67 (20%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------EIFLSGIR 92
          S  I+   +L  R   K        ++ + W VL    L+ Y T         + L+   
Sbjct: 5  SSGIVMADWLKIRGTLK--------SWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACE 56

Query: 93 LSDLPDQ 99
          + + P +
Sbjct: 57 IIERPSK 63

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 5e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------EIFLSGIRLSDLP 97
          R+G+L+K     K        +K+RWF+LT   L Y++  +       I L  + + ++ 
Sbjct: 7  REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVL 59

Query: 98 DQ 99
          D 
Sbjct: 60 DP 61

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 6e-05
 Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 7/47 (14%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          S     +G L K+    K        +K RWFVL          D  
Sbjct: 5  SSGRSYEGILYKKGAFMK-------PWKARWFVLDKTKHQLRYYDHR 44

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.8 bits (84), Expect = 9e-05
 Identities = 4/42 (9%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 45 QGFLIKRSQNKKRF-STSNNNYKQRWFVLTTKHLIYYDTDSE 85
          +G++ ++ +        SN ++ + +       + +Y     
Sbjct: 11 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKG 52

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-----TKHLIYYDTDSEIF 87
             I + G+L K + N    S +  ++K+R+F L      + +L +Y  +    
Sbjct: 15 KGGITKHGWLYKGNMNSA-ISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK 67

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
           I+++G+L KR +  K        ++ R+F+L        
Sbjct: 6  AIVKEGWLHKRGEYIK-------TWRPRYFLLKNDGTFIG 38

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 42  ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF 101
           ++R+G+L   +    +        K+ WFVLT ++L +Y  D E     +   D      
Sbjct: 3   VIRKGWLTINNIGIMK-----GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRD 57

Query: 102 HD 103
            +
Sbjct: 58  VE 59

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 5e-04
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 6/47 (12%)

Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF 87
          D +  G++ K              +++R+F L    L +        
Sbjct: 9  DCIMHGYMSKMGNPFL------TQWQRRYFYLFPNRLEWRGEGEAPQ 49

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (72), Expect = 0.003
 Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL 93
            + G+L  R++     ST    + ++++     +L+            + +
Sbjct: 5  TRKAGYLNARNKTGLVSST----WDRQFYFTQGGNLMSQARGDVAGGLAMDI 52

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.003
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
          S  +   G+L    +N  +       +K+R+FVL       +   S 
Sbjct: 5  SSGMKHSGYLWAIGKNVWK------RWKKRFFVLVQVSQYTFAMCSY 45

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.004
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 44 RQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTKHLIYYD 81
          ++G+L  R       KR   S   +KQ + VL    L  Y 
Sbjct: 3  KEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYK 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.47
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.47
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.29
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.27
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.25
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.25
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.17
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.15
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.15
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.13
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.12
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.12
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.12
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.08
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.07
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.06
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.04
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	98.98
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d1wi1a_	126	Calcium-dependent activator protein for secretion,	98.9
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	98.85
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	98.8
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	98.8
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	98.8
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.76
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	98.7
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	98.67
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	98.62
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	96.53
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	96.33
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	95.8

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3e-14  Score=93.98  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=40.5

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ||+|||.|+|...       ++||+|||||+++.|+||+++.+.. ++|.|++-
T Consensus         2 lk~GwL~k~~~~~-------~~wkkRwFvL~~~~L~YYk~~~~~~-p~g~I~L~   47 (112)
T d2coaa1           2 LREGWVVHYSNKD-------TLRKRHYWRLDCKCITLFQNNTTNR-YYKEIPLS   47 (112)
T ss_dssp             SEEEEEEECCSSS-------CCCEEEEEEECSSEEEEESSSSCSS-CSEEEETT
T ss_pred             ceEEEEEEECCCC-------CCeeEEEEEEEcceEEEEeccCCCc-cceEEeee
Confidence            7999999999876       5999999999999999999987664 48998864

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-14  Score=100.71  Aligned_cols=53  Identities=32%  Similarity=0.424  Sum_probs=45.0

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCccc---ccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF---LSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~---~~kG~I~~   95 (108)
                      .||+||||+||++++++++.  .|||+|||||+...|+||+.+.++.   ..+|.|++
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~--~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L   57 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSP--LNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDV   57 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCC--CCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEG
T ss_pred             cEEEEEEEEEecCCCCCcCc--CCceEEEEEEECCEEeeeccccccccccCccceEec
Confidence            47999999999999988888  8999999999999999999775432   34788765

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=83.26  Aligned_cols=51  Identities=22%  Similarity=0.405  Sum_probs=42.1

Q ss_pred             cccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        38 ~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      |.+.+||+|||.|+|...       ++|++|||||++..|.||+.+.+.. +.|.|.+.
T Consensus         1 ~~~~~ikeG~L~k~~~~~-------k~WkkryfvL~~~~L~~y~~~~~~~-p~~~i~l~   51 (113)
T d1plsa_           1 MEPKRIREGYLVKKGSVF-------NTWKPMWVVLLEDGIEFYKKKSDNS-PKGMIPLK   51 (113)
T ss_dssp             CCCCCSEEEEEEEESSSS-------SCCEEEEEEEETTEEEEESSTTCSS-CSEEEESS
T ss_pred             CCCCceEEEEEEEeCCCC-------CCceEEEEEEECCEEEEEecCCccc-cceEEECc
Confidence            468999999999998776       5999999999999999998876553 36766543

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=84.96  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      +..++++|||.|++. .       ++||+|||||+...|.||+++.+.. .+|.|.+-
T Consensus         5 ~~~~~~~GwLkk~~~-~-------k~WkkRwfvL~~~~L~yyk~~~~~~-~~g~i~L~   53 (130)
T d1v88a_           5 SSGIVMADWLKIRGT-L-------KSWTKLWCVLKPGVLLIYKTQKNGQ-WVGTVLLN   53 (130)
T ss_dssp             SSSCCEEEEEEECCS-S-------SSCEEEEEEEETTEEEEESCSSSCC-CCEEEECS
T ss_pred             CCCCeEeCeEEeCCC-C-------CCceEEEEEEeCCEEEEEcCCCCCc-ceeEEECC
Confidence            567899999977764 2       5999999999999999999887554 47887753

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.5e-12  Score=84.07  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=37.4

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      .|||+|||+|++.+.   ..  .+||+|||||++..|.||+++.+.. .+|.|++
T Consensus         2 ~vik~GwL~k~~~~~---~~--~~WkkRwFvL~~~~L~yyk~~~~~~-~~~~i~l   50 (111)
T d2dyna_           2 LVIRKGWLTINNIGI---MK--GGSKEYWFVLTAENLSWYKDDEEKE-KKYMLSV   50 (111)
T ss_dssp             CEEEEEEEEETTCCT---TT--TSSEEEEEEEESSEEEEESSTTCCC-EEEEEEC
T ss_pred             eEEEEeeEEEECCCC---Cc--CCceEEEEEEECCEEEEEcchhhcc-ccccccc
Confidence            489999999986542   12  5899999999999999999876443 2555443

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=4.1e-12  Score=81.81  Aligned_cols=53  Identities=19%  Similarity=0.427  Sum_probs=43.4

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      .+.++++|||.|++.+...++   .+|++|||||+...|.||+.+++.. ..|.|++
T Consensus         6 ~~~v~k~G~L~k~~~~~~~~~---~~W~~r~~vL~~~~L~~y~~~~~~~-p~g~i~L   58 (111)
T d1u5fa1           6 LPFVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQ-QKGEFAI   58 (111)
T ss_dssp             CSSEEEEEEEEEECCCSSCSS---CSEEEEEEEEETTEEEEESSTTCSS-CSEEEEC
T ss_pred             CCCeeEEEEEEEECCCCCCCc---CCceEEEEEEECCEEEeeccccccC-cceEEEe
Confidence            578999999999987765444   4999999999999999999887654 3688764

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.4e-12  Score=79.70  Aligned_cols=50  Identities=18%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecCCC
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPD   98 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l~d   98 (108)
                      .|||+|||.|++...       ++|++|||||++..|.||+.+.+.. .+|.|.+...
T Consensus         2 ~vik~G~L~K~~~~~-------~~Wkkr~fvL~~~~l~yy~~~~~~~-~~~~i~l~~~   51 (103)
T d1eaza_           2 AVIKAGYCVKQGAVM-------KNWKRRYFQLDENTIGYFKSELEKE-PLRVIPLKEV   51 (103)
T ss_dssp             CCSEEEEEEEECTTT-------CCEEEEEEEECSSEEEEESSTTCSS-CSEEEEGGGC
T ss_pred             ceEEEEEEEEECCCC-------CCeeEEEEEEECCEEEEEecccCcc-cceEEEccce
Confidence            578999999998766       5999999999999999999887543 3788766443

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.3e-12  Score=81.42  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=39.5

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ...|+|||.|+|+..       ++|++|||||+++.|.||+++++.. ..|.|++
T Consensus         3 ~~~KeG~L~K~~~~~-------k~Wk~R~fvL~~~~L~yy~~~~~~~-~~g~i~L   49 (100)
T d1faoa_           3 LGTKEGYLTKQGGLV-------KTWKTRWFTLHRNELKYFKDQMSPE-PIRILDL   49 (100)
T ss_dssp             TTCEEEEEEEECSSS-------CCEEEEEEEEETTEEEEESSTTCSS-CSEEEEG
T ss_pred             CccEEEEEEEeCCCC-------CCceEEEEEEECCEEEEEeccCCcc-CceEEec
Confidence            357999999999775       5999999999999999999887654 3677765

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.6e-12  Score=81.29  Aligned_cols=51  Identities=22%  Similarity=0.498  Sum_probs=42.3

Q ss_pred             eeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        42 vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      |||+|||.|++.+...++.   +|++|||||++..|.||+.+.+.. ..|.|.+.
T Consensus         1 vik~G~L~k~~~~~~~~~~---~Wkkr~~vL~~~~L~y~~~~~~~~-~~~~i~l~   51 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGS---EWQKRWCVVSRGLFYYYANEKSKQ-PKGTFLIK   51 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCE---EEEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             CeEEEEEEEECCCCCCCcC---CcEEEEEEEECCEEEEEecccccc-cccccccC
Confidence            6899999999887665555   999999999999999999887654 36888754

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.7e-11  Score=79.78  Aligned_cols=45  Identities=27%  Similarity=0.522  Sum_probs=37.6

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      .|+|||.|+|...       ++||+|||||+.+.|.||+.+.+.. ..|.|++
T Consensus         6 ~keG~L~K~~~~~-------k~WkrR~fvL~~~~L~yy~~~~~~~-~~g~i~L   50 (127)
T d1fgya_           6 DREGWLLKLGGRV-------KTWKRRWFILTDNCLYYFEYTTDKE-PRGIIPL   50 (127)
T ss_dssp             SEEEEEEEECSSS-------CCEEEEEEEEETTEEEEESSTTCSS-CSEEEEC
T ss_pred             ceEEEEEEECCCC-------CCcEEEEEEEECCEEEEEccCCCcc-ccceEeC
Confidence            6899999998776       5999999999999999998876543 3677664

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.3e-11  Score=82.66  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=41.0

Q ss_pred             ccceeeeeeeEeecCCcc-ccccCCCCceeEEEEeCCC-----ceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKK-RFSTSNNNYKQRWFVLTTK-----HLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k-~~~~~~~nwK~RwFVLt~~-----~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++|+|||+|++...+ ..+.  ++||+|||||+..     .|.||+...+...++|.|++.
T Consensus        15 ~~~v~k~G~L~K~~~~~~~~~~~--k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~~g~i~l~   76 (150)
T d1wg7a_          15 KGGITKHGWLYKGNMNSAISVTM--RSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLD   76 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHH--SSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTT
T ss_pred             CCCEeEEEEEEEecCCCCccccc--ccceEEEEEEEcCcCCceeEEEEeccccccccccccccc
Confidence            577899999999986543 2334  6999999999865     388888765433457877653

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.1e-11  Score=77.20  Aligned_cols=53  Identities=30%  Similarity=0.444  Sum_probs=38.2

Q ss_pred             CcccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCcee--eeecCCcccccceEEecC
Q psy17477         37 LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLI--YYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        37 ~~~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~Ls--YYk~~~ek~~~kG~I~~l   96 (108)
                      +++.+++|+|||.|+|...       +.||+|||+|+.+.+.  ||....+.....|.|++-
T Consensus         6 ~~~~~v~k~G~L~K~~~~~-------k~WkkR~fvL~~~~~~~~~~~~~~~~~~p~~~i~L~   60 (116)
T d1x1ga1           6 ELSGTVVKQGYLAKQGHKR-------KNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR   60 (116)
T ss_dssp             TTCSEEEEEEEEEEECSSS-------SSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEEST
T ss_pred             cCCCCEEEEEEEEEEcCCC-------CCCceEEEEEECCCcEEEEeccccccccceeEEEcC
Confidence            4578999999999999876       5999999999987654  333332333346777553

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.1e-11  Score=77.39  Aligned_cols=47  Identities=23%  Similarity=0.480  Sum_probs=38.5

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ||+|||.|++....      ++|++|||||+...|.||+++.+.. +.|.|++.
T Consensus         2 ik~G~L~K~~~~~~------~~W~kr~fvL~~~~L~~~~~~~~~~-~~~~i~L~   48 (102)
T d2coda1           2 VKSGWLDKLSPQGK------RMFQKRWVKFDGLSISYYNNEKEMY-SKGIIPLS   48 (102)
T ss_dssp             CEEEEEEECCSSSS------SCCEEEEEEECSSEEEEEESSCCSS-CCCEEETT
T ss_pred             cEEEEEEEECCCCC------CCceEEEEEEECCEEEEEeccCcce-eEEEEEch
Confidence            79999999974432      5999999999999999999887654 47887764

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.2e-11  Score=85.49  Aligned_cols=48  Identities=21%  Similarity=0.166  Sum_probs=40.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...++|+|||.||+.         ..||+|||||++..|.||+.+.++ .++|.|++-
T Consensus        45 g~~ilK~G~L~Kr~~---------~~wkkR~FvL~~~~L~YYkd~~~~-~~kG~I~L~   92 (147)
T d1w1ha_          45 NNLILKMGPVDKRKG---------LFARRRQLLLTEGPHLYYVDPVNK-VLKGEIPWS   92 (147)
T ss_dssp             TCCEEEEEEEEECCT---------TSCEEEEEEEETTTEEEEEETTTT-EEEEEECCC
T ss_pred             CCeEEEEEEEEeecC---------CcceEEEEEEcCCeeEEEeCCCcc-cccceEEec
Confidence            467899999999862         379999999999999999987655 358998764

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=2.7e-11  Score=79.59  Aligned_cols=42  Identities=17%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      ..++|++|||.|+|...+      .+|++|||||++..|.||+.+.+.
T Consensus         7 ~~~~i~eG~L~K~g~~~~------~~WkkR~fvL~~~~L~yy~~~~~~   48 (119)
T d1omwa2           7 GKDCIMHGYMSKMGNPFL------TQWQRRYFYLFPNRLEWRGEGEAP   48 (119)
T ss_dssp             TSCCCEEEEEEECC------------CEEEEEEEETTEEEEECTTSCC
T ss_pred             CCCeEEEEEEEEECCCCC------CCeEEEEEEEEcCeEEEEeccccc
Confidence            467899999999986543      589999999999999999977544

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-11  Score=79.06  Aligned_cols=41  Identities=24%  Similarity=0.525  Sum_probs=33.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCC-ceeeeecCCcc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK-HLIYYDTDSEI   86 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~-~LsYYk~~~ek   86 (108)
                      +..|+|+|||+|+|+..       ++||+|||||+.+ .|.||+...+.
T Consensus         4 ~~~v~k~G~L~K~~~~~-------k~Wk~RwfvL~~~~~l~~~~~~~~~   45 (118)
T d1unqa_           4 DVAIVKEGWLHKRGEYI-------KTWRPRYFLLKNDGTFIGYKERPQD   45 (118)
T ss_dssp             GGCEEEEEEEEEECSSS-------CCEEEEEEEEETTSEEEEESSCCCS
T ss_pred             cCCEEEEEEEEEECCCC-------CCcEEEEEEEeccceeEEEeeccCc
Confidence            57899999999999876       5999999999875 56677765433

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=2.8e-11  Score=77.10  Aligned_cols=45  Identities=20%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      +|+|||.|++...       ++|++|||||+...|.||+.+.+.. ..|.|.+
T Consensus         2 iK~G~L~k~~~~~-------k~W~kR~fvL~~~~L~yy~~~~~~~-~~~~i~l   46 (101)
T d2fjla1           2 IKNGILYLEDPVN-------HEWYPHYFVLTSSKIYYSEETSSDL-LRGVLDV   46 (101)
T ss_dssp             CEEEEEEEEETTT-------TEEEEEEEEEETTEEEECCCCSCTC-CCEEECS
T ss_pred             ceEEEEEEEcCCC-------CCCeEEEEEEECCEEEEEeccccce-ecceEEc
Confidence            7999999999776       5999999999999999999876543 3566543

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.7e-11  Score=76.68  Aligned_cols=48  Identities=27%  Similarity=0.493  Sum_probs=39.2

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEe
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLS   94 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~   94 (108)
                      ...++++|||.|++...       ++||+|||||+...|.||+.+++.. .+|.|+
T Consensus         5 ~s~~~k~G~L~K~~~~~-------k~WkkR~fvL~~~~l~y~~~~~~~~-~~~~~~   52 (118)
T d1v89a_           5 SSGPIKMGWLKKQRSIV-------KNWQQRYFVLRAQQLYYYKDEEDTK-PQGCMY   52 (118)
T ss_dssp             SSCEEEEEEEEEECSSS-------SCEEEEEEEEETTEEEEESSSSCCS-CSEEEC
T ss_pred             CCCCeEEEEEEEECCCC-------CCcEEEEEEEECCEEEEecccCccc-ccceec
Confidence            46789999999998776       5999999999999999999876543 245443

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=7.1e-11  Score=79.90  Aligned_cols=47  Identities=21%  Similarity=0.428  Sum_probs=38.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      -+-++|||.|++.+.       +.|++|||||++..|.||+++++.. ..|.|++
T Consensus        10 ~~~~eG~L~k~~~~~-------k~WkkrwfvL~~~~L~yY~~~~d~~-~~~~i~L   56 (136)
T d1x1fa1          10 PLYFEGFLLIKRSGY-------REYEHYWTELRGTTLFFYTDKKSII-YVDKLDI   56 (136)
T ss_dssp             CEEEEEEEEEECTTC-------CSCEEEEEEEETTEEEEESCSSCSS-CSEECCC
T ss_pred             CccEEEEEEEECCCC-------CCeEEEEEEEcCCEeEEEeeccccc-ccccccc
Confidence            356899999999877       5999999999999999999887553 3566543

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=1.1e-10  Score=74.94  Aligned_cols=50  Identities=28%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCC--CceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT--KHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~--~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ...+++||||.||+...       +.||+|||||+.  ..|.||+.+.+.. .+|.|.+.
T Consensus         5 ~s~~~~eG~L~k~~~~~-------k~WkkR~fvL~~~~~~L~~~~~~~~~~-p~g~i~l~   56 (117)
T d1v5ua_           5 SSGRSYEGILYKKGAFM-------KPWKARWFVLDKTKHQLRYYDHRMDTE-CKGVIDLA   56 (117)
T ss_dssp             CCSSSEEEEEEECCCSS-------SCCEEEEEEEETTTTEEEEESSSSCSS-CCCEEEGG
T ss_pred             CCCCeEEEEEEEECCCC-------CCceEEEEEEeCCCCEEEecccccccC-cceEEEec
Confidence            46788999999998876       589999999964  4688999887554 36776653

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=5.6e-11  Score=84.27  Aligned_cols=54  Identities=19%  Similarity=0.395  Sum_probs=43.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      .+.++++|||.|++.+.+.+.   ++|++|||||++..|.||++..+.. .+|.|.+.
T Consensus       101 ~~~~~k~G~L~K~~~~~~~~~---~~Wkkr~fvL~~~~L~yy~~~~~~~-~~~~i~L~  154 (209)
T d1u5ea1         101 LPFVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQ-QKGEFAID  154 (209)
T ss_dssp             CSSEEEEEEEEEEEHHHHTTT---CCCEEEEEEEETTEEEEESSTTCSS-CSEEEECT
T ss_pred             cCCeeEEEEEEEecCCCCCcc---ccceEEEEEEECCEEEEEecCCCCc-cceEEEec
Confidence            467899999999986643332   4999999999999999999887654 47887654

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.7e-10  Score=72.38  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=33.8

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeee--ecCCcccccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY--DTDSEIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYY--k~~~ek~~~kG~I~~   95 (108)
                      .++|+|||.|+++..       ++||+|||||+.+.+.||  +.+++. ...|.|.+
T Consensus         1 vv~k~G~L~k~~~~~-------k~WkkR~fvL~~~~~~l~~~~~~~~~-~~~~~i~~   49 (104)
T d2i5fa1           1 VIIKQGCLLKQGHRR-------KNWKVRKFILREDPAYLHYYDPAGAE-DPLGAIHL   49 (104)
T ss_dssp             CEEEEEEEEEECTTT-------CCEEEEEEEEETTTTEEEEECTTSCS-SCSEEEEC
T ss_pred             CEEEEEEEEEECCCC-------CCcEEEEEEEECCeeEEEEEcCcccc-CccceEee
Confidence            479999999999776       599999999998765543  333332 23677654

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.8e-10  Score=71.83  Aligned_cols=49  Identities=27%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      ..++++|||.|+++...      ++|++|||||+++.|.||+.+.+.. .++.|.+
T Consensus         7 ~~~~~~G~L~k~~~~~~------k~W~kr~~vL~~~~L~~y~~~~~~~-~~~~i~l   55 (107)
T d1upqa_           7 LPVHIRGWLHKQDSSGL------RLWKRRWFVLSGHCLFYYKDSREES-VLGSVLL   55 (107)
T ss_dssp             SCEEEEEEEEEECSSSS------CCEEEEEEEEETTEEEEESSTTCCS-CCEEEEG
T ss_pred             CceeEEEEEEEeCCCCC------CCeeEEEEEEECCEEEEecCccccc-ccceecc
Confidence            45689999999876543      6899999999999999999876543 2455443

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=4.7e-10  Score=71.81  Aligned_cols=50  Identities=24%  Similarity=0.405  Sum_probs=40.0

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~l   96 (108)
                      ....+++|||.|++...       +.|++|||||+...|.||+...+.. .++.|.+.
T Consensus         5 ~~~~~~~G~L~k~~~~~-------~~W~kr~~vL~~~~L~~~k~~~~~~-~~~~i~l~   54 (109)
T d1wgqa_           5 SSGSTMSGYLYRSKGSK-------KPWKHLWFVIKNKVLYTYAASEDVA-ALESQPLL   54 (109)
T ss_dssp             CCSCSCEEEEEEESSTT-------SCCEEEEEEEETTEEEEESCTTCSS-CSEEEECS
T ss_pred             CCCCcEEEEEEEECCCC-------CCceEEEEEEeCCEEEEeccccccc-cccccccc
Confidence            46778999999998776       4899999999999999999876543 35555443

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=8.4e-10  Score=72.21  Aligned_cols=42  Identities=19%  Similarity=0.416  Sum_probs=32.3

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeC--CCceeeeecCCcc
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSEI   86 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt--~~~LsYYk~~~ek   86 (108)
                      +.....+|||.|++....      +.|++|||||.  ...|.||+...+.
T Consensus        12 ~~~~~~~GyL~k~~~~~~------k~WkrRwFvL~~~~~~L~yy~~~~~~   55 (126)
T d1v5pa_          12 DRQNRICGFLDIEDNENS------GKFLRRYFILDTQANCLLWYMDNPQN   55 (126)
T ss_dssp             CCCCCEECCEEEECTTCS------SCEEEEEEEEETTTTEEEEESSCTTT
T ss_pred             cCCCceeeeEEEECCCCC------CCeeEEEEEEEcCCCeEEEeeccccc
Confidence            344466899999886543      69999999994  5679999977643

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.9e-10  Score=71.70  Aligned_cols=52  Identities=21%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCcee-ee-ecCCc-ccccceEEecC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLI-YY-DTDSE-IFLSGIRLSDL   96 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~Ls-YY-k~~~e-k~~~kG~I~~l   96 (108)
                      ...+.++|||+|+|....      ++||+|||||+.+.+. || +...+ ....+|.|.+.
T Consensus         5 ~~~~~~~G~L~K~g~~~~------k~WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~   59 (126)
T d1wi1a_           5 SSGMKHSGYLWAIGKNVW------KRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLD   59 (126)
T ss_dssp             CCCEEEEEEEEEECSSSC------CSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECS
T ss_pred             CCCCcEEEEEEEECCCCC------CCceEEEEEEeCCceEEEEEcccccccccceeeeeec
Confidence            456889999999986542      5999999999876543 43 33332 22336776553

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-09  Score=69.11  Aligned_cols=44  Identities=25%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             ceeeeeeeEeecCCccccccCCCCceeEEEEeCCC-------ceeeeecCCcc----cccceEEec
Q psy17477         41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK-------HLIYYDTDSEI----FLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~-------~LsYYk~~~ek----~~~kG~I~~   95 (108)
                      +++|+|||.|++           +||+|||||+..       .|.||+++.+.    ....|.|++
T Consensus         1 dv~k~GyL~K~k-----------~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l   55 (103)
T d1qqga1           1 DVRKVGYLRKPK-----------SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPL   55 (103)
T ss_dssp             CEEEEEEEECTT-----------TCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEG
T ss_pred             CcceeEEEEEcC-----------CCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEec
Confidence            589999998863           899999999865       48999975421    123566654

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.80  E-value=1.8e-09  Score=70.21  Aligned_cols=43  Identities=9%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             eeeeeeeEeecCCc---cccccCCCCceeEEEEeCCCceeeeecCCcc
Q psy17477         42 ILRQGFLIKRSQNK---KRFSTSNNNYKQRWFVLTTKHLIYYDTDSEI   86 (108)
Q Consensus        42 vlkeG~L~Krg~~~---k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek   86 (108)
                      ..+||||++|++..   ++-+.  ++|++|||||+...|.||+.+.+.
T Consensus         8 ~~~eG~L~rk~~~~~~~kk~~~--~~W~kr~~vL~~~~L~yy~~~~~~   53 (122)
T d1droa_           8 EGHEGYVTRKHEWDSTTKKASN--RSWDKVYMAAKAGRISFYKDQKGY   53 (122)
T ss_dssp             SSEEEEEEEECSCCCCCCTTCC--CCCEEEEEEESSSCCBEESSSSHH
T ss_pred             cceEEEEEEeecccccCcccCC--CCceEEEEEEeCCEEEEEcCcccc
Confidence            35799999985421   12223  599999999999999999987643

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.9e-09  Score=66.44  Aligned_cols=45  Identities=11%  Similarity=0.060  Sum_probs=33.9

Q ss_pred             eeeeeeEeecCCccccccCCCCceeEEEEeCCCc---eeeeecCCcccccceEEecC
Q psy17477         43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKH---LIYYDTDSEIFLSGIRLSDL   96 (108)
Q Consensus        43 lkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~---LsYYk~~~ek~~~kG~I~~l   96 (108)
                      +..|||.++..+        +.|++|||||+...   |.||+.+.+.. .+|.|++.
T Consensus         2 ~~~G~L~~~~~~--------k~W~krwfvL~~~~~~~ly~~~~~~~~~-~~~~i~l~   49 (99)
T d2coca1           2 LLCGPLRLSESG--------ETWSEVWAAIPMSDPQVLHLQGGSQDGR-LPRTIPLP   49 (99)
T ss_dssp             SSEEEEEEESSS--------SCEEEEEEECCTTCTTCEEEECCTTCSS-SCSEECGG
T ss_pred             ceEEEEEccCCC--------CCccEEEEEEecCCccEEEEECcCcccc-cccccccc
Confidence            457999998755        48999999999764   77888776543 36776654

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=5.7e-09  Score=70.11  Aligned_cols=56  Identities=14%  Similarity=0.108  Sum_probs=39.3

Q ss_pred             ccceeeeeeeEeecC---CccccccCCCCceeEEEEeCCC------ceeeeecCCcccccceEEecCC
Q psy17477         39 SDDILRQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTK------HLIYYDTDSEIFLSGIRLSDLP   97 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~---~~k~~~~~~~nwK~RwFVLt~~------~LsYYk~~~ek~~~kG~I~~l~   97 (108)
                      ..++.|||+|.++-+   ..+.-+.  ++||+|||||+..      .|.||+...+.+ .+|.|.+..
T Consensus        15 ~~~v~keG~L~~~~~~~~~~~~~~~--~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k-~~g~i~l~~   79 (136)
T d1v5ma_          15 LVDIQREGALRFMVADDAASGPGGT--AQWQKCRLLLRRAVAGERFRLEFFVPPKASR-PKVSIPLSA   79 (136)
T ss_dssp             SCSCCEEEEEEEEECSCCCSSSCCS--CCCEEEEEEEEECSSSCCEEEEEESSTTSSS-CSSCEETTT
T ss_pred             cceeeEEEEEEeeccccccCCCCCC--CCceEEEEEEeCCcccchhhhhhhCcccccC-cCcceeccc
Confidence            578889999986532   1122334  7999999999876      488999876553 477776553

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.2e-09  Score=67.82  Aligned_cols=42  Identities=10%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             cceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        40 ~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      ..+.|+|||.||+..  ....  +.|++|||||++..|.||+..+.
T Consensus         3 ~~~~k~G~L~k~~~~--g~~~--k~W~kRwfvL~~~~L~y~~~~~~   44 (101)
T d2elba2           3 NLTRKAGYLNARNKT--GLVS--STWDRQFYFTQGGNLMSQARGDV   44 (101)
T ss_dssp             CCSCCEEEEEECSCC--C------CCCEEEEEEETTEEEEECTTCC
T ss_pred             CCccEeEEEEEeccC--CCCc--cccEEEEEEEeCCEEEEEccCCc
Confidence            345699999998532  1122  68999999999999999987653

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=98.70  E-value=6.5e-09  Score=65.67  Aligned_cols=38  Identities=24%  Similarity=0.516  Sum_probs=30.7

Q ss_pred             eeeeeEeec----CCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         44 RQGFLIKRS----QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        44 keG~L~Krg----~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      .||||++|+    .+++...   ++|++|||||+.+.|.||+++.
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~---~~Wk~r~~vL~~~~L~~yk~~~   42 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASS---RSWHNVYCVINNQEMGFYKDAK   42 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSC---CCCEEEEEEEETTEEEEESSHH
T ss_pred             CeeeEEEeeEccCCCcccCC---CCCcEEEEEEECCEEEEEeChh
Confidence            389999984    4444333   4899999999999999999865

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.5e-09  Score=64.93  Aligned_cols=43  Identities=21%  Similarity=0.388  Sum_probs=33.0

Q ss_pred             eeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCCcccccceEEec
Q psy17477         44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSD   95 (108)
Q Consensus        44 keG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~ek~~~kG~I~~   95 (108)
                      +.|||.|.+.         ..||+|||||++..|.||+++.+.....|.|.+
T Consensus         3 ~s~yl~~~~~---------~~WkkR~fvL~~~~L~yyk~~~~~~~~~~~i~l   45 (95)
T d2cofa1           3 TSSYLNVLVN---------SQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSL   45 (95)
T ss_dssp             TCCEEEEEET---------TEEEEEEEEECSSCEEEECSSTTCSEEEEEECT
T ss_pred             cccchhhhcC---------CCceEEEEEEECCEEEEEecccccccccccccc
Confidence            4799988873         379999999999999999987644333566543

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=9.4e-09  Score=68.07  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=27.5

Q ss_pred             eeeeeEeecC-----CccccccCCCCceeEEEEeCCCceeeeecCCc
Q psy17477         44 RQGFLIKRSQ-----NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE   85 (108)
Q Consensus        44 keG~L~Krg~-----~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~e   85 (108)
                      |||||.++..     .+...+.  ++|++|||||++..|.||+.+.+
T Consensus         3 KeG~L~~k~~~~~~~kk~~~~~--k~Wkkr~fvL~~~~L~~y~~~~~   47 (133)
T d2j59m1           3 KEGWLHFRPLVTDKGKRVGGSI--RPWKQMYVVLRGHSLYLYKDKRE   47 (133)
T ss_dssp             EEEEEEEEECC--------------CCEEEEEEEETTEEEEESCTTC
T ss_pred             ceEEEEeeccccccccccCCCC--CCceEEEEEEeCCEEEEEecccc
Confidence            8999996532     1111223  68999999999999999997653

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=98.62  E-value=1.4e-08  Score=65.66  Aligned_cols=44  Identities=18%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             ccceeeeeeeEeecC---CccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         39 SDDILRQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~---~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...+.+||+|.+|.+   +.++.+.  ++||+|||||++..|.||+.+.
T Consensus         5 ~~g~~~eG~L~rk~~~~~~~kr~~~--k~Wkkrw~vL~~~~L~~~~~~~   51 (123)
T d1wjma_           5 SSGEQMEGMLCRKQEMEAFGKKAAN--RSWQNVYCVLRRGSLGFYKDAK   51 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSC--CCCEEEEEEEETTEEEEESSHH
T ss_pred             CCCCeeEEEEEEEeeccccCcccCC--CCCcEEEEEEECCEEEEEecch
Confidence            345677999999753   2233444  6999999999999999998654

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.0043  Score=40.55  Aligned_cols=39  Identities=13%  Similarity=0.273  Sum_probs=33.7

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...++++|.+.++....       +.+|+|||+|-+..|.|++...
T Consensus        25 ~G~li~~g~~~~~~~~~-------~~~k~R~~fLF~~~Ll~~k~~~   63 (132)
T d1v61a_          25 LGNVIFMSQVVMQHGAC-------EEKEERYFLLFSSVLIMLSASP   63 (132)
T ss_dssp             TCCCSCEEEEEBCCSSS-------SCCCEEEEEECSSCEEEEECSS
T ss_pred             ccCEEEEEEEEEEEecC-------CCcceEEEEEeCCEEEEEEEcC
Confidence            57889999999987665       5899999999999999999654

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.0095  Score=39.85  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=33.5

Q ss_pred             ccceeeeeeeEeecCCccccccCCCCceeEEEEeCCCceeeeecCC
Q psy17477         39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS   84 (108)
Q Consensus        39 ~~~vlkeG~L~Krg~~~k~~~~~~~nwK~RwFVLt~~~LsYYk~~~   84 (108)
                      ...+|++|.|.+.++..       ..++.|+|+|-.+-|-|++...
T Consensus        24 ~r~Li~eG~L~~~~~~~-------~k~~~r~~fLF~d~Ll~~k~~~   62 (162)
T d2dfka2          24 SSELIYTGEMAWIYQPY-------GRNQQRVFFLFDHQMVLCKKDL   62 (162)
T ss_dssp             CCCEEEEEEEEEESSTT-------CCCEEEEEEEETTEEEEEEECS
T ss_pred             CceEEEEEEEEEEEcCC-------CCceeEEEEEeCCeEEEEEecC
Confidence            57899999999988765       4789999999999999998543

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.0047  Score=39.36  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=26.3

Q ss_pred             ceeeeee-eEeecCCccccccCCCCceeEEEEeCCC-ceeeeecCC-cccccceEEec
Q psy17477         41 DILRQGF-LIKRSQNKKRFSTSNNNYKQRWFVLTTK-HLIYYDTDS-EIFLSGIRLSD   95 (108)
Q Consensus        41 ~vlkeG~-L~Krg~~~k~~~~~~~nwK~RwFVLt~~-~LsYYk~~~-ek~~~kG~I~~   95 (108)
                      ..+++|. |.|-+ .+       ...|+|||+|+++ .+.||...+ .....+|.|++
T Consensus         9 ~~l~~G~~l~K~~-~~-------~~~k~R~f~L~~d~~~i~~~~~~~~~~~~~~~i~i   58 (119)
T d1maia_           9 QALLKGSQLLKVK-SS-------SWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSI   58 (119)
T ss_dssp             HHHHHCEEEEEES-SS-------SCEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEG
T ss_pred             HHHHcCCeEEEeC-CC-------CCCEEEEEEEcCCCCEEEEeCCCCCCCccceEEEH
Confidence            3466775 55532 22       2447799999874 455666543 22233566654