Psyllid ID: psy17507

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120-
MHVPLPLILQKCTFIVREAEMHVPLPLILQKYVGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKNRINNKNVTVNSNASYNKIKIKPVGSTSASTKSLFDGLSSDTDDSEKYFNMIKSAPKRLIILPKKTKPMTLKVNNVTTAETDVTVVSNNSSTPVSSSTQLQTPVSSKLTLNVAELKENISPSVKVSDLKVIKSPLNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKKPKMFVSTPIQPPPAPHVETQTLIKEKISPSPKQKLRNEILVKEMNRNYVSSDISKNILNIDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSLFKTGNFIQPTVDLSPSARTLSPTSELELEDEDDDHSTVASGVLVLDNKPNKLEVVPVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEEEEcEEEEEccccccccccccccccEEEEEEcEEEEcccccccccccccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEccEEEcccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHccccEEccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccc
cccccccEEEEEEEccHHHHcccHHHHEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEcccHHHHHHHccccccEEEccEEEEEcccEEEEEcccEEcccccHHHHccEEEEEccEEEEEccccccccccccccccEEEEEcccccccccccccccccHHHccHcHHHHHHHHHHHcccEEEEEcccccEEEEEEccccccccccccccccccccHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEccccccccccccccccEEccccccccccccccccEEEccHHHHcccccccccHccccccEEcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHcccccEccccccEEEccccccc
mhvplplilQKCTFIVReaemhvplpLILQKYVGTLQGSKEFLVSAtgsffgttpqpsmfgtntstaqpatslfgatenkplfgqstttfgqptntfgttnslfgkpntgfgaavstqsntfsfnpttfgqpnttaikpfgaaapqtsnlfatntsqattafgapqtsgfgsfgtnqnqslnfnqnkptfnlggsttstgfgfgtntatnntslfgqkpatntfglptntaspfgtstsfgaqpaqtstlfnsfnkptpgfqfntnttpntslannafsgtlfgntakpaglfgnstntgglfgnstfgsntgnantfgqglnssfnlggtsntfnnplapqappasnsvntQQILNlaslpyfsaptlykgvlpatsssskldeLILPafqknrinnknvtvnsnasynkikikpvgstsastkslfdglssdtddsEKYFNMIKSAPKrliilpkktkpmtlkvnnvttaeTDVTVVsnnsstpvssstqlqtpvssklTLNVAELkenispsvkvsdlkviksplntsigsetsegdtfdfkltrkgyfvsptlnelkqlktkngpcivegftigheefgsicflesidiselnnvdldsivefrfkevvlypddankppvgtalnrpakVTLLkvwpkdkstgELIKDVQKIKNMNYEAIVIRACTRMNVEFvsyqpetgswcfkvqhfskygllesdeegesepkkpkmfvstpiqpppaphvetqtlikekispspkqkLRNEILVKEMNRnyvssdisknilnidETMDYIESSTEALARhmgtdpykVQLMKQCFEdtfdnygfpmsvsrEFYIenkahysggslfktgnfiqptvdlspsartlsptselelededddhstvASGVLvldnkpnklevvpvkfyqcrlsqkdsnitndsnknnflNVEYAKKLDRKFSITWLKYKRSFLMtcndnlmpddysdVSNLFEMIHEHFNlasvssndsyDAQVWKLCVALWGTldaknnshdinmkrKDNLTEWLESVMEenpksiaskdpeqNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVnatsdsfinKDILKLMLltsgqplydgsngiiNVCESLDWK
MHVPLPLILQKCTFIVREAEMHVPLPLILQKYVGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPafqknrinnknvtvnsnasynkikikpvgstsastkslfdglssdtddsEKYFNMIKsapkrliilpkktkpmtlkvnnvttaetdvtvvsnnsstpvssstqlqtpvssKLTLNVAELKenispsvkvsdlkviksplntsigsetsegdtfdfkLTRKGYFVSptlnelkqlktknGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVlypddankppvgtalnrpakvtllkvwpkdkstgelikdvqkikNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKKPKMFVSTPIQPPPAPHVETQTLikekispspkqklrNEILVkemnrnyvssdisknilnIDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSLFKTGNFIQPTVDLSPSARTLSPTSelelededddHSTVASGVlvldnkpnkleVVPVKFYQCRlsqkdsnitndsnknnfLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLdaknnshdinmkRKDNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSgqplydgsngiINVCESLDWK
MHVPLPLILQKCTFIVREAEMHVPLPLILQKYVGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPtfnlggsttstgfgfgtntatnntsLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKNRINNKNVTVNSNASYNKIKIKPVGSTSASTKSLFDGLSSDTDDSEKYFNMIKSAPKRLIILPKKTKPMTLKVNNVTTAEtdvtvvsnnsstpvssstQLQTPVSSKLTLNVAELKENISPSVKVSDLKVIKSPLNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYgllesdeegesepkkpKMFVSTPIQPPPAPHVETQTLIKEKISPSPKQKLRNEILVKEMNRNYVSSDISKNILNIDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSLFKTGNFIQPTVDLSPSARTLSPTSelelededddHSTVASGVLVLDNKPNKLEVVPVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK
****LPLILQKCTFIVREAEMHVPLPLILQKYVGTLQGSKEFLVSATGSFFG**************************************************LF******FG*******************************************************************************************************************************************************************NAFSGTLFGNTAKPAGLFGNSTNTGGLFGN************************************************QILNLASLPYFSAPTLYKGVLPA******LDELILPAFQKNRINNKNVTV**************************************FNMIKSAPKRLIILPKKT**MTLKVNNVT**********************************************************************TFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLL**************************************************ILVKEMNRNYVSSDISKNILNIDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSLFKTGNFIQPT*****************************SGVLVLDNKPNKLEVVPVKFYQCRLSQ**********KNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAK*************************************IFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESL***
***PLPLILQKCTFIVREAEMHVPLPL*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKS***************YEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLL***************************************************************************************************************************************************************************************************CR****************************KFSI**L*Y**********NLMPDDYSDVSNLFEMIHEHFNLAS*****SYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESV****************IFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK
MHVPLPLILQKCTFIVREAEMHVPLPLILQKYVGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKNRINNKNVTVNSNASYNKIKIKPV***********DGLSSDTDDSEKYFNMIKSAPKRLIILPKKTKPMTLKVNNVTTAETDVTV********************SKLTLNVAELKENISPSVKVSDLKVIKSPLNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLL***************FVSTPIQPPPAPHVETQTLIKEKISPSPKQKLRNEILVKEMNRNYVSSDISKNILNIDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSLFKTGNFIQPTVDLSPS********************TVASGVLVLDNKPNKLEVVPVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK
*HVPLPLILQKCTFIVREAEMHVPLPLILQKYVGTLQ***********************************************************************************************************************************************************************************************************************************************************************GLF***********************************************************************************************************************************************************************************************************************************************DFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGL*****************************************************************************************************KQC*******************************************************************TVASGVLVLDNKPNKLEVVPVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHVPLPLILQKCTFIVREAEMHVPLPLILQKYVGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKNRINNKNVTVNSNASYNKIKIKPVGSTSASTKSLFDGLSSDTDDSEKYFNMIKSAPKRLIILPKKTKPMTLKVNNVTTAETDVTVVSNNSSTPVSSSTQLQTPVSSKLTLNVAELKENISPSVKVSDLKVIKSPLNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKKPKMFVSTPIQPPPAPHVETQTLIKEKISPSPKQKLRNEILVKEMNRNYVSSDISKNILNIDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSLFKTGNFIQPTVDLSPSARTLSPTSELELEDEDDDHSTVASGVLVLDNKPNKLEVVPVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1121 2.2.26 [Sep-21-2011]
P49793 1816 Nuclear pore complex prot yes N/A 0.220 0.136 0.391 5e-42
P52948 1817 Nuclear pore complex prot no N/A 0.222 0.137 0.383 9e-42
G5EEH9 1678 Nuclear pore complex prot yes N/A 0.154 0.103 0.421 3e-36
Q9UTK4 1778 Nucleoporin nup189 OS=Sch yes N/A 0.418 0.263 0.290 3e-25
Q54EQ8 2053 Nuclear pore complex prot yes N/A 0.137 0.075 0.412 2e-24
P49687 1317 Nucleoporin NUP145 OS=Sac yes N/A 0.479 0.407 0.263 8e-21
Q026301113 Nucleoporin NUP116/NSP116 no N/A 0.123 0.124 0.303 1e-13
Q02629959 Nucleoporin NUP100/NSP100 no N/A 0.119 0.139 0.263 2e-09
Q02199472 Nucleoporin NUP49/NSP49 O no N/A 0.159 0.379 0.301 0.0002
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus GN=Nup98 PE=1 SV=2 Back     alignment and function desciption
 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 155/268 (57%), Gaps = 21/268 (7%)

Query: 546 LTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIV 605
           LT+ GY+  P++++L ++  + G CIV  FTIG + +GSI F   ++++ LN   LD IV
Sbjct: 736 LTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIV 792

Query: 606 EFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIV 665
             R KEV++Y DD  KPPVG  LNR A+VTL  VWP DK++  LIK   ++ ++NYE  +
Sbjct: 793 HIRRKEVIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 852

Query: 666 IRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKK--PKMFVSTPIQPP 723
                +   +F  Y+PETGSW FKV HFSKYGL +SDEE E  P K   K   + P+  P
Sbjct: 853 EAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPPKTTSKKLKTAPL--P 910

Query: 724 PAPHVET--QTLIKEKISPSPKQKLRNEIL--VKEMNRNYVSSDISKNIL-------NID 772
           PA    T   TL  +   P   Q    E L  V E++ + V  DI++  +       ++ 
Sbjct: 911 PAGQATTFQMTLNGKPAPPPQSQSPEVEQLGRVVELDSDMV--DITQEPVPDSVLEESVP 968

Query: 773 ETMDYIESSTEALARHMGTDPYKVQLMK 800
           E  + + +ST+ +A  +G +P+ +Q+MK
Sbjct: 969 EDQEPVSASTQ-IASSLGINPHVLQIMK 995
Plays a role in the bidirectional transport across the nucleoporin complex (NPC). The repeat domain has a direct role in the transport.
Rattus norvegicus (taxid: 10116)
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4 Back     alignment and function description
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans GN=npp-10 PE=2 SV=1 Back     alignment and function description
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup189 PE=1 SV=1 Back     alignment and function description
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum GN=nup98 PE=3 SV=1 Back     alignment and function description
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP145 PE=1 SV=1 Back     alignment and function description
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP116 PE=1 SV=2 Back     alignment and function description
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP100 PE=1 SV=1 Back     alignment and function description
>sp|Q02199|NUP49_YEAST Nucleoporin NUP49/NSP49 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP49 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1121
307191801 1894 Nuclear pore complex protein Nup98-Nup96 0.637 0.377 0.356 2e-85
328699108 1784 PREDICTED: nuclear pore complex protein 0.599 0.376 0.344 2e-83
328699110 1726 PREDICTED: nuclear pore complex protein 0.599 0.389 0.344 3e-83
332021975 1640 Nuclear pore complex protein Nup98-Nup96 0.536 0.366 0.371 1e-78
427788357 1793 Putative nuclear pore complex protein [R 0.576 0.360 0.332 1e-64
242024600 1779 nuclear pore complex protein nup98, puta 0.655 0.413 0.320 5e-61
401879179 1790 nuclear pore complex protein Nup98-Nup96 0.551 0.345 0.314 1e-59
405969075 1686 Nuclear pore complex protein Nup98-Nup96 0.679 0.451 0.290 1e-58
291243965 1772 PREDICTED: nucleoporin 98kD-like [Saccog 0.881 0.557 0.266 3e-58
126327982 1799 PREDICTED: nuclear pore complex protein 0.645 0.402 0.299 7e-58
>gi|307191801|gb|EFN75239.1| Nuclear pore complex protein Nup98-Nup96 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 316/887 (35%), Positives = 425/887 (47%), Gaps = 172/887 (19%)

Query: 50   FFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTN-----SLF 104
             FGT  QPS FG  T+    A + FG+                 T  FGTT+      LF
Sbjct: 240  LFGTPAQPSPFGNTTAGTSTAGTAFGSM----------------TGGFGTTSQSGSTGLF 283

Query: 105  GKPNTGFGAAVSTQSNTFSFN-PTT---FGQPNTTAIKPFGAAAPQTSNLFATNTSQAT- 159
            GKP T FG   +T +N+F+FN P++   FG    +  KPFG AAP  + LFATN +  T 
Sbjct: 284  GKPITNFGTPATT-TNSFAFNSPSSTNLFG--TNSQAKPFGTAAP--TPLFATNNTNQTA 338

Query: 160  -TAFGA---PQTSGFGS-FGTNQ-NQSLN-FNQNKPTFNLGGSTTSTGF-GFGTNTATNN 211
             T FG     Q++GFGS FG+ Q NQS+  F+QNK  FN+  ++TSTGF GFG  TA+NN
Sbjct: 339  GTGFGGINTGQSTGFGSAFGSTQPNQSIGLFSQNKSAFNIPSTSTSTGFTGFG-QTASNN 397

Query: 212  TS--LFGQKPATNTFGLPT-NTASP--FGTSTSFGAQPAQTSTLFNSFNKP---TPGFQF 263
            T+  LFG K  T  FG  T  TA+P  FGT+T F +     S+LFNS  KP   T GF F
Sbjct: 398  TATPLFGNKTTTAGFGTSTFGTAAPSAFGTNTGFNSGQNTGSSLFNSSFKPAGQTSGFSF 457

Query: 264  NTNTTPNTSLANNA---FSG--TLFGNTAKPAGLFGNST-----NTGGLFGNSTFGSNTG 313
               +T +T L  N      G  +LFG   KP  LFGN+      N  G FG STFG+N+ 
Sbjct: 458  GNTSTSSTGLGTNTGLNLGGGTSLFGQ-QKPGSLFGNTGSNTTFNNPGSFGTSTFGTNSN 516

Query: 314  NANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGV 373
                 G GL    N G  SN   N   P           QQIL L S P+  +P L K +
Sbjct: 517  MMAGIGTGL---LNGGIASNQAKNDSVPVH---------QQILALVSAPFGDSP-LLKNL 563

Query: 374  LPATSSSSKLDELILPAFQKNR-INNKNVTVNSNASYNKIKIKPVGSTSASTKSLFDGLS 432
            LPA   S K +EL+ P    ++ +N+    V +N+   KIK + V +   S KSLFDGL 
Sbjct: 564  LPA---SGKAEELLKPINPTSKMLNSPQYKVTANSRSPKIKARAVSAVQLSKKSLFDGLE 620

Query: 433  SDTDDSEKYFNMIKSAPKRLIILPK-----------KTKPMT------------------ 463
             +     + F    +A KRL++ PK           +  P+T                  
Sbjct: 621  EEDPVLSEAFQPRPNA-KRLVLRPKSATNSSIQSPTENGPVTKLTGTDDIRADVSNGYGN 679

Query: 464  -LKVNNVTTAETDVTVVSNN--SSTPVSSST-------------QLQTPVSSKLTLN--- 504
             ++V N      D   ++N+  SST    ST               ++P S    +N   
Sbjct: 680  SIEVTNKENHSQDNNRLANDRRSSTSWLKSTIPRKNKVPDDELEGQRSPFSGTTNMNEEI 739

Query: 505  ---VAELK--ENISPSVKVSDLKVIKSPLNTS-IGSETS------------EGDTFDFK- 545
               VAEL+   N S S     L  I+ PLN+S +G ++S            + D   F  
Sbjct: 740  NNTVAELRPQHNSSNSTHSDTLNSIEIPLNSSTLGDKSSANLTVQNTDSSQDADESSFSM 799

Query: 546  -------------LTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESID 592
                         L R GY+  P +++L         C V  FT+G E +G++ F +S D
Sbjct: 800  LQPNWTMNMAKVTLRRAGYYTIPPIDKLDDYVCGE-TCNVPNFTVGREGYGNVYFPDSFD 858

Query: 593  ISELNNVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKD 652
            +  LN   LD IV FR KEV++YPDD  KPPVG  LNR A+VTL KVWP DKS  E I D
Sbjct: 859  VYGLN---LDEIVHFRHKEVIIYPDDDKKPPVGQGLNRKAQVTLDKVWPHDKSLHEPITD 915

Query: 653  VQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEP--K 710
             Q++  MNYE  + R   + +  F+ Y+PETGSW FKV HFSKYGL +SDE+    P   
Sbjct: 916  PQRLAAMNYEGKLRRVSAKHDTRFLEYRPETGSWVFKVDHFSKYGLSDSDEDDGQVPSAS 975

Query: 711  KPKMFVSTPIQPPPAPHVETQTLI----KEKISPSPKQKLRNEILVKEMNRNYVS-SDIS 765
            + K     P+      +     L+    K+ +      K+ N+    E+  NY+  + I 
Sbjct: 976  EAKKLKGVPVPQQKGVNAGKTDLLTTTNKDVMMNGGTAKIGNDKH-PEIESNYLGETSIG 1034

Query: 766  KNILNIDETMDYIESSTEAL---ARHMGTDPYKVQLMKQCFEDTFDN 809
            +     D + +   S+   +   AR  GTD +K+QLMK  F DT D+
Sbjct: 1035 RMFAPRDYSYEKQPSAVSPVGDNARVAGTDSHKLQLMKASFFDTNDD 1081

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328699108|ref|XP_003240830.1| PREDICTED: nuclear pore complex protein Nup98-Nup96 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328699110|ref|XP_001943615.2| PREDICTED: nuclear pore complex protein Nup98-Nup96 isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332021975|gb|EGI62302.1| Nuclear pore complex protein Nup98-Nup96 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|427788357|gb|JAA59630.1| Putative nuclear pore complex protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|242024600|ref|XP_002432715.1| nuclear pore complex protein nup98, putative [Pediculus humanus corporis] gi|212518191|gb|EEB19977.1| nuclear pore complex protein nup98, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|401879179|gb|AFQ30769.1| nuclear pore complex protein Nup98-Nup96 [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|405969075|gb|EKC34085.1| Nuclear pore complex protein Nup98-Nup96 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|291243965|ref|XP_002741870.1| PREDICTED: nucleoporin 98kD-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|126327982|ref|XP_001370272.1| PREDICTED: nuclear pore complex protein Nup98-Nup96 [Monodelphis domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1121
FB|FBgn0039120 1960 Nup98-96 "Nucleoporin 98-96kD" 0.200 0.114 0.373 1.9e-83
RGD|71033 1816 Nup98 "nucleoporin 98" [Rattus 0.222 0.137 0.368 4.3e-68
UNIPROTKB|E1BYU8 1731 NUP98 "Uncharacterized protein 0.229 0.148 0.353 1.2e-67
UNIPROTKB|P52948 1817 NUP98 "Nuclear pore complex pr 0.221 0.136 0.374 1.9e-67
UNIPROTKB|E1BCV4 1816 NUP98 "Uncharacterized protein 0.618 0.381 0.298 3.2e-65
UNIPROTKB|J3KP29 1638 NUP98 "Nuclear pore complex pr 0.221 0.151 0.374 5e-65
UNIPROTKB|E2R4V6 1800 NUP98 "Uncharacterized protein 0.247 0.153 0.345 1.6e-64
UNIPROTKB|F1SUZ2 1702 NUP98 "Uncharacterized protein 0.223 0.146 0.350 3.6e-64
ZFIN|ZDB-GENE-040426-1180 1807 nup98 "nucleoporin 98" [Danio 0.561 0.348 0.316 4e-64
WB|WBGene00003796 1678 npp-10 [Caenorhabditis elegans 0.158 0.106 0.388 6.7e-54
FB|FBgn0039120 Nup98-96 "Nucleoporin 98-96kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 417 (151.9 bits), Expect = 1.9e-83, Sum P(4) = 1.9e-83
 Identities = 87/233 (37%), Positives = 134/233 (57%)

Query:   546 LTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIV 605
             L R GY+  P+L++L+    ++G C+V  FT+G E +G++ F + +D++ LN   LD IV
Sbjct:   884 LRRVGYYTIPSLDDLRSYLAEDGSCVVPNFTVGREGYGNVFFGKEMDVAGLN---LDEIV 940

Query:   606 EFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIV 665
              FR KE+++YPDD NKPP+G  LNR A+VTL +VWP DK+  E IKD Q++  M++E  +
Sbjct:   941 HFRNKEIIIYPDDENKPPIGQGLNRDAQVTLDQVWPLDKTKHEAIKDPQRLLEMDWEGKL 1000

Query:   666 IRACTRMNVEFVSYQPETGSWCFKVQHFSKYXXXXXXXXXXXXXXXXKMFVSTPIQPPPA 725
              R C + +  F+ Y+PETGSW F+V+HFSKY                K  ++T ++    
Sbjct:  1001 RRVCDKNDTRFIEYRPETGSWVFRVKHFSKYGLGDSDEEDELPTDPKKAKIAT-LEAQQR 1059

Query:   726 PHVETQTLIK----EKISPSPKQKLRNEILVKEMNRNYVSSDISKNILNIDET 774
              + E  TL      +KIS    + L  + LV  +   +   D +   L +D+T
Sbjct:  1060 ANAEKMTLNSLRQAQKISEDAARNLDPKALVAGVASGFRPMDDTAEFLLMDKT 1112
GO:0005643 "nuclear pore" evidence=ISS;IPI
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS
GO:0044613 "nuclear pore central transport channel" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0007184 "SMAD protein import into nucleus" evidence=IMP
GO:0030718 "germ-line stem cell maintenance" evidence=IMP
RGD|71033 Nup98 "nucleoporin 98" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYU8 NUP98 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P52948 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCV4 NUP98 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J3KP29 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4V6 NUP98 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUZ2 NUP98 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1180 nup98 "nucleoporin 98" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00003796 npp-10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1121
pfam04096137 pfam04096, Nucleoporin2, Nucleoporin autopeptidase 2e-50
pfam12110 290 pfam12110, Nup96, Nuclear protein 96 2e-14
COG5651490 COG5651, COG5651, PPE-repeat proteins [Cell motili 2e-04
pfam13634106 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat r 2e-04
COG5651490 COG5651, COG5651, PPE-repeat proteins [Cell motili 3e-04
COG5651490 COG5651, COG5651, PPE-repeat proteins [Cell motili 6e-04
PHA025841229 PHA02584, 34, long tail fiber, proximal subunit; P 9e-04
pfam13634106 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat r 0.001
pfam13634106 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat r 0.001
pfam13634106 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat r 0.001
>gnl|CDD|202886 pfam04096, Nucleoporin2, Nucleoporin autopeptidase Back     alignment and domain information 
 Score =  173 bits (441), Expect = 2e-50
 Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 7/144 (4%)

Query: 550 GYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRF 609
           GY+ SP++ EL ++ +      VE FT+G + +GSI FL  +D+S    +DLD IV+F  
Sbjct: 1   GYWTSPSIEELSKM-SLEELSSVENFTVGRKGYGSIEFLGPVDLS---GIDLDKIVDFGP 56

Query: 610 KEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRAC 669
           + V +YPDD NKPPVG  LN PA +TL   +P+DKST + IKD  K +   +E  + R  
Sbjct: 57  RSVEVYPDDENKPPVGEGLNVPATITLENCYPRDKSTKKPIKDPSKPR---FEKHLKRLK 113

Query: 670 TRMNVEFVSYQPETGSWCFKVQHF 693
            +   EF+SY PETG+W FKV+HF
Sbjct: 114 EKKGAEFISYDPETGTWVFKVKHF 137

Length = 137
>gnl|CDD|221425 pfam12110, Nup96, Nuclear protein 96 Back     alignment and domain information
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information
>gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region Back     alignment and domain information
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information
>gnl|CDD|222890 PHA02584, 34, long tail fiber, proximal subunit; Provisional Back     alignment and domain information
>gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region Back     alignment and domain information
>gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region Back     alignment and domain information
>gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1121
PF04096141 Nucleoporin2: Nucleoporin autopeptidase; InterPro: 100.0
PF12110 290 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup 99.85
KOG0845|consensus903 99.65
KOG3091|consensus508 98.5
KOG3091|consensus508 98.34
KOG0845|consensus903 98.21
PF13634113 Nucleoporin_FG: Nucleoporin FG repeat region 97.67
PF13634113 Nucleoporin_FG: Nucleoporin FG repeat region 97.19
PF12931 284 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ 90.57
KOG0307|consensus 1049 80.44
>PF04096 Nucleoporin2: Nucleoporin autopeptidase; InterPro: IPR007230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information 
Probab=100.00  E-value=7e-50  Score=400.47  Aligned_cols=137  Identities=53%  Similarity=0.915  Sum_probs=123.2

Q ss_pred             CeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCCCccCcc----ceEEEecceEEEccCCCCCCCCC
Q psy17507        550 GYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLD----SIVEFRFKEVVLYPDDANKPPVG  625 (1121)
Q Consensus       550 ~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~~~~~ld----~iV~~~~k~v~VYpd~~~kPp~G  625 (1121)
                      ||||+|||+||++|+.+| |++|+||+|||+|||+|+|++||||++||   ||    +||+|++++|+||||+..|||+|
T Consensus         1 ~Y~~~Psl~eL~~m~~~~-l~~V~~F~Vgr~g~G~I~f~~pVDl~~ld---ld~~~~~iV~~~~~~v~VYpd~~~kPp~G   76 (141)
T PF04096_consen    1 GYWTSPSLEELQKMSDEE-LKRVENFTVGREGYGSIEFLGPVDLSGLD---LDDIFGKIVIFEPKEVTVYPDESEKPPVG   76 (141)
T ss_dssp             TEEEES-HHHHHHSSCTT-CCSBESEEEEETTTEEEEESSEBE-TTSB---CGCTBTTTEEEETTEEEESSSSSS--STT
T ss_pred             CceEcCCHHHHHhcCHHh-hCccCCeEEEeccEEEEEECCceeccccc---chhccCCEEEEecCEEEEECCCCCCCCCC
Confidence            799999999999999999 99999999999999999999999999999   88    99999999999999999999999


Q ss_pred             CCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCce
Q psy17507        626 TALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHF  693 (1121)
Q Consensus       626 ~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HF  693 (1121)
                      +||||||+|||+||||++|.++++|+||+++.   |+++|+|+|+++|++||+||++||+|+|+|+||
T Consensus        77 ~GLN~~A~ItL~~~~p~~~~~~~~i~d~~~~~---~~~~l~~~~~~~~~~FvsYd~~tG~W~F~V~HF  141 (141)
T PF04096_consen   77 EGLNVPAIITLENCWPKDKSTREPIKDPSKPR---FEKKLKRLTEKMGAEFVSYDPETGTWVFRVEHF  141 (141)
T ss_dssp             STTCS-EEEEESS---BBTTTTCB--STTCHH---HHHHHHHHHHCTTSEEEEEETTTTEEEEEESS-
T ss_pred             CCcCCCEEEEEEeeEecCCCCCccccCccHHH---HHHHHHHHHhcCCCEEEEEeCCCcEEEEEEecC
Confidence            99999999999999999999999999999864   899999999999999999999999999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of autocatalytic serine endopeptidases belong to MEROPS peptidase family S59 (clan SP). The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 50 unique proteins, collectively known as nucleoporins. A number of the peptides are synthesised as precursors and undergo self-catalyzed cleavage. The proteolytic cleavage site of yeast Nup145p has been mapped upstream of an evolutionary conserved serine residue. Cleavage occurs at the same site when a precursor is artificially expressed in Escherichia coli. A hydroxyl-containing residue is critical for the reaction, although a thiol-containing residue offers an acceptable replacement. In vitro kinetics experiments using a purified precursor molecule demonstrate that the cleavage is self-catalyzed and that the catalytic domain lies within the N-terminal moiety. Taken altogether, the data are consistent with a proteolytic mechanism involving an N>O acyl rearrangement and a subsequent ester intermediate uncovered in other self-processing proteins []. Nup98 is a component of the nuclear pore that plays its primary role in the export of RNAs. Nup98 is expressed in two forms, derived from alternate mRNA splicing. Both forms are processed into two peptides through autoproteolysis mediated by the C-terminal domain of hNup98. The three-dimensional structure of the C-terminal domain reveals a novel protein fold, and thus a new class of autocatalytic proteases. The structure further reveals that the suggested nucleoporin RNA binding motif is unlikely to bind to RNA []. The following nucleoporins share an ~150-residue C-terminal domain responsible for NPC targeting [, ]: Vertebrate Nup98, a component of the nuclear pore that plays its primary role in the export of RNAs. Yeast Nup100, plays an important role in several nuclear export and import pathways including poly(A)+ RNA and protein transport. Yeast Nup116, involved in mRNA export and protein transport. Yeast Nup145, involved in nuclear poly(A)+ RNA and tRNA export. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore [, ]. The NUP C-terminal domain adopts a predominantly beta-strand structure. The molecule consists of a six-stranded beta-sheet sandwiched against a two-stranded beta-sheet and flanked by alpha-helical regions. The N-terminal helical region consists of two short helices, whereas the stretch on the opposite side of molecule consists of a single, longer helix [, ].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3PBP_E 2AIV_A 1KO6_A 2Q5X_A 2Q5Y_C 3KEP_A 3KES_A 3NF5_B 3TKN_I.
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex Back     alignment and domain information
>KOG0845|consensus Back     alignment and domain information
>KOG3091|consensus Back     alignment and domain information
>KOG3091|consensus Back     alignment and domain information
>KOG0845|consensus Back     alignment and domain information
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region Back     alignment and domain information
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region Back     alignment and domain information
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C Back     alignment and domain information
>KOG0307|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1121
2q5x_A155 Crystal Structure Of The C-Terminal Domain Of Hnup9 3e-35
2q5y_A152 Crystal Structure Of The C-Terminal Domain Of Hnup9 2e-33
3tkn_C152 Structure Of The Nup82-Nup159-Nup98 Heterotrimer Le 2e-33
1ko6_A187 Crystal Structure Of C-Terminal Autoproteolytic Dom 4e-33
3nf5_A164 Crystal Structure Of The C-Terminal Domain Of Nucle 2e-13
3kep_A174 Crystal Structure Of The Autoproteolytic Domain Fro 2e-12
3pbp_B148 Structure Of The Yeast Heterotrimeric Nup82-Nup159- 9e-11
2aiv_A149 Multiple Conformations In The Ligand-Binding Site O 1e-10
>pdb|2Q5X|A Chain A, Crystal Structure Of The C-Terminal Domain Of Hnup98 Length = 155 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (371), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
Query: 546 LTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIV 605
           LT+ GY+  P++++L ++  + G CIV  FTIG + +GSI F   ++++ LN   LD IV
Sbjct: 4   LTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIV 60
Query: 606 EFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIV 665
             R KEVV+Y DD  KPPVG  LNR A+VTL  VWP DK++  LIK   ++ ++NYE  +
Sbjct: 61  HIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 120
Query: 666 IRACTRMNVEFVSYQPETGSWCFKVQHFSKY 696
                +   +F  Y+PETGSW FKV HF+KY
Sbjct: 121 EAVSRKQGAQFKEYRPETGSWVFKVSHFAKY 151
>pdb|2Q5Y|A Chain A, Crystal Structure Of The C-Terminal Domain Of Hnup98 Length = 152 Back     alignment and structure
>pdb|3TKN|C Chain C, Structure Of The Nup82-Nup159-Nup98 Heterotrimer Length = 152 Back     alignment and structure
>pdb|1KO6|A Chain A, Crystal Structure Of C-Terminal Autoproteolytic Domain Of Nucleoporin Nup98 Length = 187 Back     alignment and structure
>pdb|3NF5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Nuclear Pore Complex Component Nup116 From Candida Glabrata Length = 164 Back     alignment and structure
>pdb|3KEP|A Chain A, Crystal Structure Of The Autoproteolytic Domain From The Nuclear Pore Complex Component Nup145 From Saccharomyces Cerevisiae Length = 174 Back     alignment and structure
>pdb|3PBP|B Chain B, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116 Nucleoporin Complex Length = 148 Back     alignment and structure
>pdb|2AIV|A Chain A, Multiple Conformations In The Ligand-Binding Site Of The Yeast Nuclear Pore Targeting Domain Of Nup116p Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1121
2q5x_A155 Nuclear pore complex protein NUP98; nucleoporin, a 2e-62
1ko6_A187 Nuclear pore complex protein NUP98; nucleoporin, a 1e-55
3kep_A174 Nucleoporin NUP145; nuclear pore complex, NUP145-N 4e-54
3nf5_A164 Nucleoporin NUP116; nuclear pore complex, glebs do 7e-52
3pbp_B148 Nucleoporin NUP116/NSP116; beta-propeller, mRNA ex 3e-51
3bg1_B 442 Nucleoporin NUP145; NPC, transport, WD repeat, aut 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3jro_A 753 Fusion protein of protein transport protein SEC13 2e-15
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 4e-07
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 5e-06
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C Length = 155 Back     alignment and structure
 Score =  208 bits (530), Expect = 2e-62
 Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 545 KLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSI 604
            LT+ GY+  P++++L ++  + G CIV  FTIG + +GSI F   ++   L N++LD I
Sbjct: 3   ILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVN---LTNLNLDDI 59

Query: 605 VEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAI 664
           V  R KEVV+Y DD  KPPVG  LNR A+VTL  VWP DK++  LIK   ++ ++NYE  
Sbjct: 60  VHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGR 119

Query: 665 VIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLE 700
           +     +   +F  Y+PETGSW FKV HF+KYGL +
Sbjct: 120 LEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Length = 187 Back     alignment and structure
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysis, protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* Length = 174 Back     alignment and structure
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata} Length = 164 Back     alignment and structure
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A Length = 148 Back     alignment and structure
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B Length = 442 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1121
2q5x_A155 Nuclear pore complex protein NUP98; nucleoporin, a 100.0
1ko6_A187 Nuclear pore complex protein NUP98; nucleoporin, a 100.0
3nf5_A164 Nucleoporin NUP116; nuclear pore complex, glebs do 100.0
3pbp_B148 Nucleoporin NUP116/NSP116; beta-propeller, mRNA ex 100.0
3kep_A174 Nucleoporin NUP145; nuclear pore complex, NUP145-N 100.0
3bg1_B 442 Nucleoporin NUP145; NPC, transport, WD repeat, aut 99.97
3jro_A 753 Fusion protein of protein transport protein SEC13 99.92
3mmy_B56 Nuclear pore complex protein NUP98; mRNA export, n 99.1
1ko6_B64 Nuclear pore complex protein NUP98; nucleoporin, a 96.92
3mzk_B 441 Protein transport protein SEC16; alpha-helical-sta 89.9
2pm7_A 399 Protein WEB1, protein transport protein SEC31; bet 80.33
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C Back     alignment and structure
Probab=100.00  E-value=2e-59  Score=473.14  Aligned_cols=155  Identities=46%  Similarity=0.876  Sum_probs=148.3

Q ss_pred             CceecCCCeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCCCccCccceEEEecceEEEccCCCCCC
Q psy17507        543 DFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKP  622 (1121)
Q Consensus       543 ~~~l~~~~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~~~~~ld~iV~~~~k~v~VYpd~~~kP  622 (1121)
                      ||+|+++||||+|||+||++|++++++|+|+||+|||+|||+|+|++||||++||   ||+||+|++++|+||||++.||
T Consensus         1 gi~l~~~~Y~~~PsieeL~~~~~~~~~~~V~~FtVgR~gyG~I~f~~pvDl~~ld---Ld~IV~~~~~~v~VYpd~~~KP   77 (155)
T 2q5x_A            1 GIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIVHIRRKEVVVYLDDNQKP   77 (155)
T ss_dssp             CCBCCSTTEEEESCHHHHHHHSCTTSCCEEEEEEEEETTTEEEEEEEEEECTTCB---HHHHEEEETTEEEECC----CC
T ss_pred             CcEEeCCCeEEcCCHHHHHhhhhhccccEECCEEEEeeeEEEEEeCcceeeccCC---cccEEEEccCEEEEeCCCCCCC
Confidence            6899999999999999999999898779999999999999999999999999999   9999999999999999999999


Q ss_pred             CCCCCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCceeeecCCC
Q psy17507        623 PVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLE  700 (1121)
Q Consensus       623 p~G~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HFs~ygl~d  700 (1121)
                      |+|+||||||+|||++|||+||.++++|+||+++.+++|++||+|+|+++||+||+||++||+|||+|+|||+|||+|
T Consensus        78 pvG~GLN~~A~ITL~~~~P~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d  155 (155)
T 2q5x_A           78 PVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD  155 (155)
T ss_dssp             CTTBTTBSCEEEEECSCCCBCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred             CCCCCcCcCEEEEEeeeEecCCCcCccccCcchhhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeCCccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Back     alignment and structure
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata} Back     alignment and structure
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A Back     alignment and structure
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* Back     alignment and structure
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Back     alignment and structure
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1121
g1ko6.1158 b.119.1.1 (A:,B:) C-terminal autoproteolytic domai 8e-60
d1daba_539 b.80.1.7 (A:) Virulence factor P.69 pertactin {Bor 7e-04
>d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella pertussis [TaxId: 520]} Length = 539 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1121
g1ko6.1158 C-terminal autoproteolytic domain of nucleoporin n 100.0