Psyllid ID: psy17539

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN
ccccccccEEEEEEEccccccccEEEEEcccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHcccccccccccEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEccHHHHHHHHccccccccccccccccEEEEEEEccEEEEEccccccccccccccccccEEEEccccccccccccccEEEEEEEccccccccccccEEEEEcccccHHHHHHHHHHHHcccHHHHHcEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccHHcccccccccccccEEEEccccccccccccccccccEEEcc
cHHHHHccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccHHHHHccccccccccEEEEEEEcccHHHHHccccEEEEEEEccccccccccccccHHHHcccccccccccEEEEccccccHHHHHHHHccEEEEccccccHHHHHHHHHHcccccccccEEEEEEEEccEEEEcccccccHHHHccccccccEEEEEEccHHHcccccccEEEEEEEEcccccccccccEEEEEcccccHHHHHHHHHHHccccHHHHHHHEEEEEccccEEccccccEEEccccHHcccccccEEEEEcccccccccccccEEEEEEccccHHHHHHHHHHHccccHHHHHHEEEEEEEccccccccccccccEEHHHcccccccccccHccccccccccccccccccccccEEEEc
MFLDLFNRvevtfcdktilndqgFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQaykdtpgnplphnfegtlkdilapinkpkmpkkmhyqklsipvvelinkrpfkvqaykdtpgnplphnfegtlkdilapinkpkmpkkmhyqklsipvvelinkrpfkVRTQFLDEAkkdaaiqpellgpdnggsgLLRLLEISNQKITAeldhsvsmdqlfgmnattkiyrleeipqdevsldpdellipVAHFQKdihnifgypfllrikdnERFSKVKERLAKKLNIQEKEFEKVRVqdkihpgresnpwpsaymanappsksnpdellipVAHFQKdihnifgypfllrikdnERFSKVKERLAKKLNIQEKEFekykfgvinnnrityieedsdcpvsinqfrsnishqdYKVWLGldhinkapkrsRLNYLEKAIKIYN
MFLDLFNRVevtfcdktilndQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKdaaiqpellgpdnggSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKklniqekefekvrvqdkihpgresnpwpsAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKlniqekefekykfgvinNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLdhinkapkrsrlnylEKAIKIYN
MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN
*FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPIN******KMHYQKLSIPVVELINKRPFKVQAYKDT*****PHNFEGTLKDILAPIN******KMHYQKLSIPVVELINKRPFKVRTQFLDEA*****I**********GSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKV**************************************************LLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIK***
MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINK***********KAIKIYN
MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN
MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDxxxxxxxxxxxxxxxxxxxxxFEKYKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q6A4J81103 Ubiquitin carboxyl-termin yes N/A 0.559 0.224 0.395 1e-47
Q4VSI41103 Ubiquitin carboxyl-termin yes N/A 0.559 0.224 0.401 2e-47
Q6U7I11101 Ubiquitin carboxyl-termin yes N/A 0.559 0.225 0.395 4e-47
Q930091102 Ubiquitin carboxyl-termin yes N/A 0.559 0.225 0.392 4e-47
Q9VYQ81129 Ubiquitin carboxyl-termin yes N/A 0.566 0.222 0.331 5e-37
Q7JKC31135 Ubiquitin carboxyl-termin yes N/A 0.241 0.094 0.361 4e-12
Q9FPT11116 Ubiquitin carboxyl-termin yes N/A 0.530 0.210 0.273 5e-12
Q84WU21115 Ubiquitin carboxyl-termin no N/A 0.257 0.102 0.358 1e-11
Q60MK81129 Ubiquitin carboxyl-termin N/A N/A 0.241 0.094 0.336 5e-09
Q9UTT11129 Ubiquitin carboxyl-termin yes N/A 0.555 0.217 0.241 2e-06
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1 Back     alignment and function desciption
 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 163/301 (54%), Gaps = 53/301 (17%)

Query: 2    FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
            F DL++RV+V FCDKTI ND GF + LS +M Y Q+   VAQ LNTD  L+Q FK Q Y+
Sbjct: 788  FRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 847

Query: 62   DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYKD 117
            D PGNPL HN+EGTL+D+L    KP+ PKK++YQ+L + + +  N+R FK       +++
Sbjct: 848  DGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFRE 906

Query: 118  TPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKK 177
                  P    G ++D+L    K                VEL +K               
Sbjct: 907  EEITLYPDK-HGCVRDLLEECKK---------------AVELGDK--------------- 935

Query: 178  DAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQD 237
                           SG LRLLEI + KI         ++ L    AT++ +R+EEIP D
Sbjct: 936  --------------ASGRLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLD 979

Query: 238  EVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKV 296
            +V +D + E+LI VAHF K++   FG PFLLRI   E F +V +R+   L+IQEKEFEK 
Sbjct: 980  QVDIDKENEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKF 1039

Query: 297  R 297
            +
Sbjct: 1040 K 1040
Hydrolase that deubiquitinates target proteins such as FOXO4, p53/TP53, MDM2, ERCC6, PTEN and DAXX. Together with DAXX, prevents MDM2 self-ubiquitination and enhances the E3 ligase activity of MDM2 towards p53/TP53, thereby promoting p53/TP53 ubiquitination and proteasomal degradation. Deubiquitinates p53/TP53 and MDM2 and strongly stabilizes p53/TP53 even in the presence of excess MDM2, and also induces p53/TP53-dependent cell growth repression and apoptosis. Deubiquitination of FOXO4 in presence of hydrogen peroxide is not dependent on p53/TP53 and inhibits FOXO4-induced transcriptional activity. In association with DAXX, is involved in the deubiquitination and translocation of PTEN from the nucleus to the cytoplasm, both processes that are counteracted by PML. Involved in cell proliferation during early embryonic development. Involved in transcription-coupled nucleotide excision repair (TC-NER) in response to UV damage: recruited to DNA damage sites following interaction with KIAA1530/UVSSA and promotes deubiquitination of ERCC6, preventing UV-induced degradation of ERCC6.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1 Back     alignment and function description
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2 Back     alignment and function description
>sp|Q9VYQ8|UBP7_DROME Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q7JKC3|UBP7_CAEEL Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis elegans GN=usp-7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2 Back     alignment and function description
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1 Back     alignment and function description
>sp|Q60MK8|UBP7_CAEBR Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis briggsae GN=usp-7 PE=3 SV=1 Back     alignment and function description
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
242015212 1093 ubiquitin carboxyl-terminal hydrolase, p 0.575 0.233 0.459 1e-59
328782136 1313 PREDICTED: LOW QUALITY PROTEIN: ubiquiti 0.629 0.212 0.428 3e-55
380028927 1281 PREDICTED: ubiquitin carboxyl-terminal h 0.629 0.217 0.428 3e-55
350397968 1249 PREDICTED: ubiquitin carboxyl-terminal h 0.629 0.223 0.428 6e-55
340720921 1079 PREDICTED: ubiquitin carboxyl-terminal h 0.629 0.258 0.425 4e-54
443686056 1007 hypothetical protein CAPTEDRAFT_149911 [ 0.568 0.250 0.444 3e-52
383864151 1111 PREDICTED: ubiquitin carboxyl-terminal h 0.559 0.223 0.43 5e-52
307206361 1079 Ubiquitin carboxyl-terminal hydrolase 7 0.566 0.232 0.451 6e-51
307166164 1101 Ubiquitin carboxyl-terminal hydrolase 7 0.568 0.228 0.459 6e-51
390343020 1106 PREDICTED: ubiquitin carboxyl-terminal h 0.613 0.245 0.409 8e-51
>gi|242015212|ref|XP_002428266.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] gi|212512840|gb|EEB15528.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/296 (45%), Positives = 184/296 (62%), Gaps = 41/296 (13%)

Query: 2    FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
            F DLF+R+EVTFC+K+I  D GFT++LS +MTY Q+   VAQ LNTD  L+Q FK Q++K
Sbjct: 779  FEDLFHRIEVTFCNKSISTDPGFTMDLSQRMTYNQIARAVAQRLNTDPSLLQFFKSQSFK 838

Query: 62   DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGN 121
            D+PG+PL  +F+GTLKD+LA  +KPK P+K+ YQ LS+P+ EL NK+ FK          
Sbjct: 839  DSPGHPLRCSFDGTLKDLLA-YSKPKGPRKIFYQHLSMPIDELENKKQFKC--------- 888

Query: 122  PLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAI 181
                        I    N  +  + M Y           NKR   + +  L+EAKK   +
Sbjct: 889  ------------IWVGANLKEEKELMLYP----------NKR--GLVSDLLEEAKKQVEL 924

Query: 182  QPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSL 241
             P+       GSG LR+ E+ + KI   L   V +D L    A+ K+YR+EEIP+DEV L
Sbjct: 925  SPD-------GSGKLRIFELQSSKIGPTLREEVGLDTLNQPGASMKVYRIEEIPKDEVEL 977

Query: 242  DPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVR 297
              DE+L+PVAHFQK+++  FG PF L+IK+ E FSKVK+R+ KKL+IQEKEFEK +
Sbjct: 978  QEDEMLLPVAHFQKEMYATFGIPFFLKIKNGEPFSKVKDRIFKKLDIQEKEFEKFK 1033

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328782136|ref|XP_003250090.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 7 [Apis mellifera] Back     alignment and taxonomy information
>gi|380028927|ref|XP_003698135.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 7-like [Apis florea] Back     alignment and taxonomy information
>gi|350397968|ref|XP_003485047.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 7-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340720921|ref|XP_003398877.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 7-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|443686056|gb|ELT89456.1| hypothetical protein CAPTEDRAFT_149911 [Capitella teleta] Back     alignment and taxonomy information
>gi|383864151|ref|XP_003707543.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307206361|gb|EFN84413.1| Ubiquitin carboxyl-terminal hydrolase 7 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307166164|gb|EFN60413.1| Ubiquitin carboxyl-terminal hydrolase 7 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|390343020|ref|XP_780569.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 7-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
ZFIN|ZDB-GENE-030131-36561110 usp7 "ubiquitin specific pepti 0.507 0.202 0.373 7.6e-32
UNIPROTKB|F5H8E51003 USP7 "Ubiquitin carboxyl-termi 0.505 0.223 0.38 3e-32
UNIPROTKB|F1N5561086 USP7 "Ubiquitin carboxyl-termi 0.505 0.206 0.384 2.7e-32
RGD|13069151103 Usp7 "ubiquitin specific pepti 0.503 0.202 0.382 1.7e-32
UNIPROTKB|Q4VSI41103 Usp7 "Ubiquitin carboxyl-termi 0.503 0.202 0.382 1.7e-32
UNIPROTKB|F1RKZ61103 USP7 "Ubiquitin carboxyl-termi 0.505 0.203 0.38 2.8e-32
MGI|MGI:21820611103 Usp7 "ubiquitin specific pepti 0.505 0.203 0.384 2.8e-32
UNIPROTKB|F1PX831086 USP7 "Ubiquitin carboxyl-termi 0.505 0.206 0.38 3.5e-32
UNIPROTKB|B7Z8151086 USP7 "Ubiquitin carboxyl-termi 0.505 0.206 0.38 3.5e-32
UNIPROTKB|Q930091102 USP7 "Ubiquitin carboxyl-termi 0.505 0.203 0.38 3.6e-32
ZFIN|ZDB-GENE-030131-3656 usp7 "ubiquitin specific peptidase 7 (herpes virus-associated)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 361 (132.1 bits), Expect = 7.6e-32, P = 7.6e-32
 Identities = 93/249 (37%), Positives = 135/249 (54%)

Query:   110 FKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFK--- 166
             FK Q Y+D PGNPL HN+EGTL+D+L    KP+ PKK++YQ+L + + +  N+R FK   
Sbjct:   848 FKSQGYRDGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKAIW 906

Query:   167 VRTQFLDEA-----KKDAAIQPEL------LGPDNGGSGLLRLLEISNQKITAELDHSVS 215
             + + F +E       K   ++  L      +   + GS  LRLLEI + KI         
Sbjct:   907 LNSMFREEEITLYPDKHGCVRDLLEECKKAVELSDKGSEKLRLLEIVSYKIIGVHQEDEL 966

Query:   216 MDQLFGMNATTKIYRLEEIPQDEVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNER 274
             ++ L    A ++ +R+EEIP D+V LD + E+LIPVAHF K++   FG PFLL+I+  E 
Sbjct:   967 LECL--SPAASRTFRIEEIPLDQVDLDKENEMLIPVAHFHKEVFGTFGIPFLLKIRQGEP 1024

Query:   275 FSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIP-- 332
             F +V +R+   L+IQEKEFEK +    +  GR        Y  N    +  P  +  P  
Sbjct:  1025 FREVMKRIQSMLDIQEKEFEKFKFAI-VMMGRHQYINEEDYEVNLKDFEPQPGNMSHPRP 1083

Query:   333 ---VAHFQK 338
                + HF K
Sbjct:  1084 WLGLDHFNK 1092
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0008233 "peptidase activity" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
UNIPROTKB|F5H8E5 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N556 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306915 Usp7 "ubiquitin specific peptidase 7 (herpes virus-associated)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VSI4 Usp7 "Ubiquitin carboxyl-terminal hydrolase 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RKZ6 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2182061 Usp7 "ubiquitin specific peptidase 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX83 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z815 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q93009 USP7 "Ubiquitin carboxyl-terminal hydrolase 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
COG50771089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 4e-11
COG50771089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 4e-07
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 44/237 (18%)

Query: 94   YQKLSIPVVELINKRPFKVQAYK-----DTPGNPLPHNFEGTLKDILAPINKPKMPKKMH 148
            Y  L   V   ++  PF ++  K     D     +       LK+ L+  ++ +      
Sbjct: 814  YDDLCRNVSCKLHVTPFYLRGTKSTELEDRIRRVVGSKSIFLLKEALSSSSEFRQAPVDF 873

Query: 149  YQKLSIPVVELINKRPFKVR---------TQFLDEAKKDAAIQPELLGPDNGGSGLLRLL 199
            Y+ L +P+ EL  KR  ++                 +KD                    L
Sbjct: 874  YEVLDVPLSELERKRLIRLCFLSNGYQHVYLAEFYVEKDYTAVD--------------HL 919

Query: 200  EISNQKI--TAELDHSVSMDQLF------GMNATTKIYR--------LEEIPQDEVSLDP 243
             I   K+  T EL  SV + ++       G +  T I           E  P ++  L  
Sbjct: 920  HIVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLIIDDNVRSTLYGEVFPLEQEQLTT 979

Query: 244  DELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQD 300
            +E+ + V HF KD+    G PF+  I   E F   K RL  +   + K F K+++  
Sbjct: 980  NEMCVVVQHFFKDLIRTHGIPFMFVIVPFETFLDTKVRLVARFGYKYKLFSKIKLFV 1036

Length = 1089
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PF14533213 USP7_C2: Ubiquitin-specific protease C-terminal; P 100.0
COG50771089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
PF12436249 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp 99.78
KOG1863|consensus1093 99.76
PF14533213 USP7_C2: Ubiquitin-specific protease C-terminal; P 99.35
COG50771089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 98.6
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 89.65
PF12436249 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp 88.18
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A Back     alignment and domain information 
Probab=100.00  E-value=1.3e-50  Score=386.74  Aligned_cols=207  Identities=43%  Similarity=0.695  Sum_probs=137.8

Q ss_pred             ceeeeeeccchhhhhhccCceEEEEecCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccchhhhcccCCceeeH
Q psy17539         90 KKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRT  169 (443)
Q Consensus        90 ~~l~YE~L~~~V~E~e~~~~~kv~~~~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~ele~K~~~tV~~  169 (443)
                      +.+|||+|++||+|+|+++++||+|+    +++++   +++.+++++|                        |++ || +
T Consensus         1 ~~l~YevL~i~l~ElE~kk~~kv~w~----~~~~~---~~~~~~~~vp------------------------k~~-tV-~   47 (213)
T PF14533_consen    1 DTLYYEVLDIPLKELENKKQFKVTWL----NDGLK---EEQEYELLVP------------------------KTG-TV-S   47 (213)
T ss_dssp             -EEEEEE-SS-HHHHHSB--EEEEEE-----TTS----EE-EEEE--B------------------------TT--BH-H
T ss_pred             CceEEEecCCCHHHHhCceEEEEEEE----CCCCc---ceeEEEEEEC------------------------CCC-CH-H
Confidence            47999999999999999999999999    66666   4667889887                        898 99 9


Q ss_pred             HHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCCcceeEEEeecCccccCCC-CCCeEE
Q psy17539        170 QFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLD-PDELLI  248 (443)
Q Consensus       170 dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~~~~~~~~E~ip~de~~~~-~~e~lv  248 (443)
                      |+++++++++++++       +++++||||++++||++++++.+.+++++   ++.. .+|+|+||+||+++. ++    
T Consensus        48 Dll~~l~~k~~~~~-------~~~~~lrl~ev~~~ki~~~~~~d~~i~~l---~~~~-~~r~E~ip~ee~~~~~~~----  112 (213)
T PF14533_consen   48 DLLEELQKKVGFSE-------EGTGKLRLWEVSNHKIYKILSEDEPISSL---NDYI-TLRIEEIPEEELNLDDES----  112 (213)
T ss_dssp             HHHHHHHTT----T-------T----EEEEEEETTEEEEEE-TTSBGGGS-----TT-EEEEEE--GGGSS--TT-----
T ss_pred             HHHHHHHHHcCCCc-------CCcCcEEEEEeECCEEEeecCCCCchhhc---cCcc-eeeeecCChHHhhccccc----
Confidence            99999999999876       78899999999999999999999999988   4444 578999999988764 20    


Q ss_pred             eeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccccccCCCCCCCCCC
Q psy17539        249 PVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDE  328 (443)
Q Consensus       249 ~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ip~ee~~~~~  328 (443)
                                                                                                   +++
T Consensus       113 -----------------------------------------------------------------------------~~~  115 (213)
T PF14533_consen  113 -----------------------------------------------------------------------------EGE  115 (213)
T ss_dssp             ------------------------------------------------------------------------------TE
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         145


Q ss_pred             ceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCc---ceecCCCCC--cccccc
Q psy17539        329 LLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNR---ITYIEEDSD--CPVSIN  403 (443)
Q Consensus       329 ~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~---~~yl~dd~d--~~~~l~  403 (443)
                      ++|+||||+|+++++|||||+|+|+|||+|++||+|||+||||++|||+|||||||++++   |+|++|| |  ++++..
T Consensus       116 ~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~-~~~il~~~~  194 (213)
T PF14533_consen  116 KLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDD-DDLILFDEI  194 (213)
T ss_dssp             EEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT--T----GGG
T ss_pred             eEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceecccc-chhhhhhhh
Confidence            788999999999999999999999999999999999999999999999999999998754   6999997 5  555541


Q ss_pred             cccccccCCCCcceeeecCCCCCCCC
Q psy17539        404 QFRSNISHQDYKVWLGLDHINKAPKR  429 (443)
Q Consensus       404 ~~~~~~~~~~~~~~LGLDH~dk~~k~  429 (443)
                       +.      ..+.||||||+||+|||
T Consensus       195 -~~------~~~~~LgLdH~dk~~kr  213 (213)
T PF14533_consen  195 -FN------PDDPWLGLDHPDKSPKR  213 (213)
T ss_dssp             -TS-------S--EEEEE--------
T ss_pred             -cC------ccCCEEEEeCCCCCCCC
Confidence             12      11469999999999987

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
2ylm_A530 Mechanism Of Usp7 (Hausp) Activation By Its C-Termi 5e-48
2ylm_A530 Mechanism Of Usp7 (Hausp) Activation By Its C-Termi 3e-31
>pdb|2YLM|A Chain A, Mechanism Of Usp7 (Hausp) Activation By Its C-Terminal Ubiquitin-Like Domain (Hubl) And Allosteric Regulation By Gmp-Synthetase Length = 530 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (478), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 2   FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
           F DL++RV+V FCDKTI ND GF + LS +M Y Q+   VAQ LNTD  L+Q FK Q Y+
Sbjct: 233 FRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 292
Query: 62  DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYKD 117
           D PGNPL HN+EGTL+D+L    KP+ PKK++YQ+L + + +  N+R FK       +++
Sbjct: 293 DGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFRE 351
Query: 118 TPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKK 177
                 P    G ++D+L    K                VEL  K               
Sbjct: 352 EEITLYPDK-HGCVRDLLEECKK---------------AVELGEK--------------- 380
Query: 178 DAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQD 237
                          SG LRLLEI + KI         ++ L    AT++ +R+EEIP D
Sbjct: 381 --------------ASGKLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLD 424
Query: 238 EVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKV 296
           +V +D + E+L+ VAHF K++   FG PFLLRI   E F +V +R+   L+IQEKEFEK 
Sbjct: 425 QVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKF 484
Query: 297 R 297
           +
Sbjct: 485 K 485
>pdb|2YLM|A Chain A, Mechanism Of Usp7 (Hausp) Activation By Its C-Terminal Ubiquitin-Like Domain (Hubl) And Allosteric Regulation By Gmp-Synthetase Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 4e-55
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 5e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 Back     alignment and structure
 Score =  190 bits (484), Expect = 4e-55
 Identities = 113/297 (38%), Positives = 161/297 (54%), Gaps = 45/297 (15%)

Query: 2   FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
           F DL++RV+V FCDKTI ND GF + LS +M Y Q+   VAQ LNTD  L+Q FK Q Y+
Sbjct: 233 FRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 292

Query: 62  DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGN 121
           D PGNPL HN+EGTL+D+L     P+ PKK++YQ+L + + +  N+R FK          
Sbjct: 293 DGPGNPLRHNYEGTLRDLLQFFK-PRQPKKLYYQQLKMKITDFENRRSFKCI-------- 343

Query: 122 PLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAI 181
                                +  +   +++++   +    R        L+E KK    
Sbjct: 344 --------------------WLNSQFREEEITLYPDKHGCVR------DLLEECKK---- 373

Query: 182 QPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSL 241
               +      SG LRLLEI + KI         ++ L    AT++ +R+EEIP D+V +
Sbjct: 374 ---AVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLDQVDI 428

Query: 242 DP-DELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVR 297
           D  +E+L+ VAHF K++   FG PFLLRI   E F +V +R+   L+IQEKEFEK +
Sbjct: 429 DKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFK 485
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 100.0
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 99.54
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 93.92
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 93.74
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 91.62
2kvr_A130 Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi 90.79
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 84.33
4efo_A94 Serine/threonine-protein kinase TBK1; ubiquitin li 82.61
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 82.27
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.4e-66  Score=548.88  Aligned_cols=296  Identities=43%  Similarity=0.736  Sum_probs=264.1

Q ss_pred             CccccccceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539          1 MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL   80 (443)
Q Consensus         1 y~~~L~nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l   80 (443)
                      ||+||+||+.|+|+|...+++++|+||||++|||+|||++||++||+||++||||++++|++.|+++++++.+++|+|||
T Consensus       232 yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l  311 (530)
T 2ylm_A          232 YFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLL  311 (530)
T ss_dssp             HHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHS
T ss_pred             HHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHh
Confidence            79999999999999987788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeeeeccchhhhhhccCceEEEEecCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccchhhhc
Q psy17539         81 APINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELI  160 (443)
Q Consensus        81 ~~~~~~~~~~~l~YE~L~~~V~E~e~~~~~kv~~~~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~ele  160 (443)
                      .++++ +.++.+|||+|++||+|+|+++++||.|+    ++.++    .+.+.+++|                       
T Consensus       312 ~~~~~-~~~~~l~YevL~ipl~ElE~~r~~kv~w~----~~~~~----~~~~~l~vp-----------------------  359 (530)
T 2ylm_A          312 QFFKP-RQPKKLYYQQLKMKITDFENRRSFKCIWL----NSQFR----EEEITLYPD-----------------------  359 (530)
T ss_dssp             TTSCS-SSCCEEEEEECSSCHHHHHSBCCEEEEEE----CTTSC----EEEEEECCB-----------------------
T ss_pred             hcccC-CCCCeEEEEECCCCHHHHhhCceEEEEEE----CCCCc----eEEEEEEcC-----------------------
Confidence            85554 35689999999999999999999999999    55555    447888877                       


Q ss_pred             ccCCceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCC-cceeEEEeecCcccc
Q psy17539        161 NKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNA-TTKIYRLEEIPQDEV  239 (443)
Q Consensus       161 ~K~~~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~-~~~~~~~E~ip~de~  239 (443)
                       |++ +| +|+++++++++++++       ++++++|||++++|||+++++.+.+++++   ++ ....+|+|+||++|+
T Consensus       360 -K~g-tV-~Dll~~l~k~~~~~~-------~~~~~lRl~ev~~~ki~ki~~~~~~i~~i---~d~~~~~~rieeip~ee~  426 (530)
T 2ylm_A          360 -KHG-CV-RDLLEECKKAVELGE-------KASGKLRLLEIVSYKIIGVHQEDELLECL---SPATSRTFRIEEIPLDQV  426 (530)
T ss_dssp             -TTC-BH-HHHHHHHHTTCCCCT-------TCCCCEEEEEEETTEEEEEECTTSBGGGS---CCCTTCEEEEEECCGGGS
T ss_pred             -CCC-CH-HHHHHHHHHhcCCCc-------CCcccEEEEEEECCEEEEecCCCcccccc---cccccceEEEEECCHHHh
Confidence             999 99 999999999999876       78899999999999999999999999988   33 245677999999888


Q ss_pred             CC-CCCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCccccccc
Q psy17539        240 SL-DPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMAN  318 (443)
Q Consensus       240 ~~-~~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~  318 (443)
                      ++ .+                                                                           
T Consensus       427 ~~~~~---------------------------------------------------------------------------  431 (530)
T 2ylm_A          427 DIDKE---------------------------------------------------------------------------  431 (530)
T ss_dssp             SCCTT---------------------------------------------------------------------------
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            76 54                                                                           


Q ss_pred             CCCCCCCCCCceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCCCCc
Q psy17539        319 APPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDC  398 (443)
Q Consensus       319 ip~ee~~~~~~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd~d~  398 (443)
                              ++++|+||||+|++++.||+||+|+|++||+|++||+||++||||++|||+|||||||+.+++.||+|| |+
T Consensus       432 --------~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~-d~  502 (530)
T 2ylm_A          432 --------NEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINED-EY  502 (530)
T ss_dssp             --------TEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTT-TC
T ss_pred             --------CcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCc-cc
Confidence                    346677888888889999999999999999999999999999999999999999999999999999998 88


Q ss_pred             ccccccccccc-cCCCCcceeeecCCCC
Q psy17539        399 PVSINQFRSNI-SHQDYKVWLGLDHINK  425 (443)
Q Consensus       399 ~~~l~~~~~~~-~~~~~~~~LGLDH~dk  425 (443)
                      ++++.+|.+.. ..+.+++||||||+||
T Consensus       503 ~~~l~~~~~~~~~~~~~~~~LgLdH~~k  530 (530)
T 2ylm_A          503 EVNLKDFEPQPGNMSHPRPWLGLDHFNK  530 (530)
T ss_dssp             CCCGGGTSCSTTCSSSCCCEEEEECCC-
T ss_pred             eehhhhhhccccccCCccceecccCCCC
Confidence            88998876421 1134688999999997
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens} Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 89.69
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 88.03
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 82.9
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 80.95
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.69  E-value=0.57  Score=36.18  Aligned_cols=71  Identities=13%  Similarity=0.076  Sum_probs=50.7

Q ss_pred             cceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCC-CCCcHHHh
Q psy17539          7 NRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHN-FEGTLKDI   79 (443)
Q Consensus         7 nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~-~~~~L~d~   79 (443)
                      +-|.|+++.....+.+.|++.|...||=.+|-.++++..|+++...||+-...  +.+..++... +..+|.++
T Consensus         8 ~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~--~~~~~~~~l~~d~~tL~~Y   79 (97)
T d1wjna_           8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESS--KMPGREIELENDLQPLQFY   79 (97)
T ss_dssp             CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECT--TSCSCEEECCCSSSBSGGG
T ss_pred             CeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCC--CCCcccceecCCCcCHhhc
Confidence            34667665544444567999999999999999999999999999999975432  3344444443 44566654
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure