Psyllid ID: psy17558

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MELARQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF
Secondary Structure (PSIPRED)
ccccccccccEEEEcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHEEEEEEEEEEcccccccccccccEEEccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEccHcHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHEEEHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
melarqdeadvvvirkpkwnrlnsyvrktvvprhriqpqvrhkvepdgiyedeytcipppvIMIFISAVEIGFFLYDAMivgdtyslrgpmaktliynpfhrAEVWRFMTYMLVHVGIWenaaqdeadvvvirkpkwnrlnsyvrktvvprhriqpqvrhkvepdgiyedeytcipppvIMIFISAVEIGFFLYDAMivgdtyslrgpmaktliynpfhrAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAgslatsitdphvflagASGGVYALIAAHVATIIMVRSLLKQQWDF
Flexible Loop (DISEMBL)
melarqdeadvvvirkpkwnrlnsyvrktvvprhriqpqvrhkvepdgiyeDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVvirkpkwnrlnsyvrktvvprhriqpqvrhkvepdgiyeDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF
Low Complexity Region (SEG)
MELARQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF
Disordered region (IsUnstruct)
*********DVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQ****
Disordered Region (DISOPRED)
*******EADVVVIRKPKWNRLNSYVRKTVVPRHRIQP***HKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQP****KVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF
Disordered Region (DISEMBL)
********ADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF
Disordered Region (DISPRO)
*ELARQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQW**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELARQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
P58872	404	Rhomboid-related protein	yes	N/A	0.473	0.371	0.444	7e-32
P34356	435	Rhomboid-related protein	yes	N/A	0.580	0.422	0.371	8e-31
Q9NX52	303	Rhomboid-related protein	no	N/A	0.473	0.495	0.459	2e-30
A2AGA4	302	Rhomboid-related protein	yes	N/A	0.422	0.443	0.510	3e-30
P58873	404	Rhomboid-related protein	no	N/A	0.470	0.368	0.428	6e-30
P20350	355	Protein rhomboid OS=Droso	no	N/A	0.429	0.383	0.446	2e-26
O75783	438	Rhomboid-related protein	no	N/A	0.416	0.301	0.474	8e-26
Q8VC82	373	Rhomboid-related protein	no	N/A	0.419	0.356	0.481	1e-25
Q19821	356	Rhomboid-related protein	no	N/A	0.425	0.379	0.392	1e-24
O88779	164	Rhomboid-related protein	no	N/A	0.236	0.457	0.533	6e-14

>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1

 Score =  138 bits (347), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 106/153 (69%), Gaps = 3/153 (1%)

Query: 168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGD-TYSLRGP--MAKTLIYNPFHRAEVW 224
           Y D YTC PPP  MI ++ +E+ FFLY+ + +G     +  P  +  +L+Y+P  RA+VW
Sbjct: 153 YYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVW 212

Query: 225 RFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV 284
           R++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D   
Sbjct: 213 RYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTA 272

Query: 285 FLAGASGGVYALIAAHVATIIMVRSLLKQQWDF 317
            + G+SGGVYAL++AH+A I+M  S +K Q+  
Sbjct: 273 PVVGSSGGVYALVSAHLANIVMNWSGMKCQFKL 305

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3 SV=2

 Score =  134 bits (338), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 122/199 (61%), Gaps = 15/199 (7%)

Query: 112 MLVHVGIWENAAQDEADVV-VIRKPKWNRLNSYVRK---TVVPRHRIQPQVRHKVEPDGI 167
           M +++ + E    D AD   ++ K K  RL  Y+ +   TV P+++ +  V  +++    
Sbjct: 60  MSLYLEMREGKPVDFADFCYLMSKCKGYRLREYLFRAALTVTPKNQ-RIHVFSELQ---- 114

Query: 168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPM--AKTLIYNPFHRAEVWR 225
               Y C+PPP+ +IF+S V++ F+LY  +   +   L GP+     LI + +H  E+WR
Sbjct: 115 ---RYKCVPPPIFLIFLSIVQLAFYLYYVVDSSEGVWLSGPIPTMSPLIVSQYHLPELWR 171

Query: 226 FMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVF 285
             TY L++VG FH++ N+L+Q+ +G+PLE+VHR WR+ I+Y +GVL GS+ +   DP VF
Sbjct: 172 LFTYCLINVGIFHIIFNILIQLAIGVPLELVHR-WRIYILYFMGVLFGSILSLALDPTVF 230

Query: 286 LAGASGGVYALIAAHVATI 304
           L G + G ++LIA+H+ TI
Sbjct: 231 LCGGAAGSFSLIASHITTI 249

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 99/161 (61%), Gaps = 11/161 (6%)

Query: 152 HRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAM-------IVGDTYS 204
           HRI  +     +  G Y +   C PPPV +I IS  E+  F+Y A+       I  DT  
Sbjct: 46  HRIVSKWMLPEKSRGTYLERANCFPPPVFIISISLAELAVFIYYAVWKPQKQWITLDTGI 105

Query: 205 LRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLI 264
           L  P     IY+P  R E WRF++YMLVH G  H++ NL +Q++LGIPLEMVH+  RV +
Sbjct: 106 LESP----FIYSPEKREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGL 161

Query: 265 IYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATII 305
           +YL GV+AGSLA+SI DP  +L GASGGVYAL+  +   ++
Sbjct: 162 VYLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVL 202

Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors. Known substrate: EFNB3.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 11/145 (7%)

Query: 168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAM-------IVGDTYSLRGPMAKTLIYNPFHR 220
           Y +   C+PPP+ +I IS  E+  F+Y A+       I  DT  L  P    L Y P  R
Sbjct: 61  YLERANCLPPPLFIILISLAELAVFIYYAVWKPQKQWITLDTGILESP----LTYCPEKR 116

Query: 221 AEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSIT 280
            E WRF++YMLVH G  H+V NLL+QI+LGIPLEMVH+  RV ++YL GVLAGSLA+SI 
Sbjct: 117 EEAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGSLASSIF 176

Query: 281 DPHVFLAGASGGVYALIAAHVATII 305
           DP   L GASGGVYAL+  +   +I
Sbjct: 177 DPLKSLVGASGGVYALMGGYFMNVI 201

Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors. Known substrate: EFNB3.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 104/154 (67%), Gaps = 5/154 (3%)

Query: 168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGP----MAKTLIYNPFHRAEV 223
           Y D YTC PPP  MI I+ +E+  FLY+ +++ D + L+      +  +L+Y+P  RA+ 
Sbjct: 153 YYDSYTCCPPPWFMITITLLEVALFLYNGVLL-DQFVLQVTHPRYLKNSLVYHPQLRAQA 211

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TY+ +H G   L +N+ +Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D  
Sbjct: 212 WRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMT 271

Query: 284 VFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF 317
             + G+SGGVYAL++AH+A I+M  S +K Q+  
Sbjct: 272 APVVGSSGGVYALVSAHLANIVMNWSGMKCQFKL 305

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 87/139 (62%), Gaps = 3/139 (2%)

Query: 178 PVIMIFISAVEIGFFLYDAMIV-GDTYSLRGPM--AKTLIYNPFHRAEVWRFMTYMLVHV 234
           P  ++ IS +EI  F YD   +    + L  P+     L+Y P  R +VWRF +YM +H 
Sbjct: 102 PWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQVWRFFSYMFLHA 161

Query: 235 GGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVY 294
             FHL  N+++Q+  GIPLE++H   R+ +IY+ GV AGSL TS+ D  VFL GASGGVY
Sbjct: 162 NWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTSVVDSEVFLVGASGGVY 221

Query: 295 ALIAAHVATIIMVRSLLKQ 313
           AL+AAH+A I +  + +K 
Sbjct: 222 ALLAAHLANITLNYAHMKS 240

Acts early in embryonic development to establish position along the dorsoventral axis and then again later to specify the fate of neuronal precursor cells. Involved in EGF receptor signaling; cleaves Spitz to release the active growth factor.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 85/135 (62%), Gaps = 3/135 (2%)

Query: 175 IPPPVIMIFISAVEIGFFL-YDAMIVGDTYSLRGP--MAKTLIYNPFHRAEVWRFMTYML 231
            PPPV M  ++  +I  FL Y A +         P  M   L+Y+P HRA  WRF+TYM 
Sbjct: 194 CPPPVFMASVTLAQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMF 253

Query: 232 VHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASG 291
           +HVG   L  N L+Q+++G+PLEMVH   R+ ++YL GVLAGSL  SITD    + G SG
Sbjct: 254 MHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMRAPVVGGSG 313

Query: 292 GVYALIAAHVATIIM 306
           GVYAL +AH+A ++M
Sbjct: 314 GVYALCSAHLANVVM 328

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 173 TCIPPPVIMIFISAVEIGFFL-YDAMIVGDTYSLRGP--MAKTLIYNPFHRAEVWRFMTY 229
           TC PPPV M  ++  +I  FL Y A +         P  M   L+Y+P HRA  WRF+TY
Sbjct: 128 TC-PPPVFMASVTLAQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTY 186

Query: 230 MLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGA 289
           M +HVG   L  N L+Q+++G+PLEMVH   R+ ++YL GVLAGSL  SITD    + G 
Sbjct: 187 MFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGG 246

Query: 290 SGGVYALIAAHVATIIM 306
           SGGVYAL +AH+A ++M
Sbjct: 247 SGGVYALCSAHLANVVM 263

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 18/153 (11%)

Query: 168 YEDEYTCIPPPVIMIFISAVEIGFFLY--------------DAMIVGDTYSLRGPMAKTL 213
           Y D Y+  PPP+ M+ I+ +++G F +                  V   ++  G      
Sbjct: 101 YIDSYSWCPPPIFMLLITIIQVGIFFFYWESDGGRSIWTDCAGCFVHHNHTAPG----IF 156

Query: 214 IYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAG 273
           I+ P  R E WRF +YM +H G  HL+ N+++Q+L+GIPLE+ H+ WR+  IYL+ V +G
Sbjct: 157 IFAPKLRGEAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSG 216

Query: 274 SLATSITDPHVFLAGASGGVYALIAAHVATIIM 306
           SL     DP+  L GAS GVYALI AHVA +I+
Sbjct: 217 SLLQYAIDPNSLLVGASAGVYALIFAHVANVIL 249

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus GN=Rhbdl1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 54/75 (72%)

Query: 232 VHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASG 291
           +HVG   L  N L+Q+++G+PLEMVH   R+ ++YL GVLAGSL  SITD    + G SG
Sbjct: 2   MHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGSG 61

Query: 292 GVYALIAAHVATIIM 306
           GVYAL +AH+A ++M
Sbjct: 62  GVYALCSAHLANVVM 76

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
193702432	369	PREDICTED: rhomboid-related protein 3-li	0.533	0.457	0.597	1e-51
383860265	368	PREDICTED: rhomboid-related protein 3-li	0.514	0.442	0.640	3e-50
91087949	356	PREDICTED: similar to conserved hypothet	0.504	0.449	0.625	6e-50
345490373	387	PREDICTED: rhomboid-related protein 3-li	0.466	0.382	0.657	8e-50
340718076	385	PREDICTED: rhomboid-related protein 3-li	0.447	0.368	0.678	5e-49
340718078	378	PREDICTED: rhomboid-related protein 3-li	0.447	0.375	0.678	6e-49
340718080	361	PREDICTED: rhomboid-related protein 3-li	0.447	0.393	0.678	7e-49
350400135	385	PREDICTED: rhomboid-related protein 3-li	0.447	0.368	0.678	7e-49
350400137	361	PREDICTED: rhomboid-related protein 3-li	0.447	0.393	0.678	8e-49
322787426	416	hypothetical protein SINV_04339 [Solenop	0.447	0.341	0.699	7e-48

>gi|193702432|ref|XP_001947411.1| PREDICTED: rhomboid-related protein 3-like [Acyrthosiphon pisum]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 125/169 (73%)

Query: 138 NRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAM 197
           N  N Y+  T+VPR   + +       DG YEDEY+C PP + M+ +S +E+ FF +D +
Sbjct: 99  NLFNKYIHYTIVPRGPPRLRTAGVDRTDGDYEDEYSCNPPALCMVIVSLIEVLFFTWDVL 158

Query: 198 IVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVH 257
            +  T S++GPMA   IYNP  R E WRF+TYM VHVG  HL VNL+VQ+LLG+PLEMVH
Sbjct: 159 KLKTTESIQGPMASMFIYNPHRRREAWRFLTYMFVHVGQTHLTVNLIVQLLLGVPLEMVH 218

Query: 258 RWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIM 306
           R WRV++IYL GVLAGSLATS+TDP V+LAGASGGVYALI AHVATII+
Sbjct: 219 RGWRVVLIYLSGVLAGSLATSVTDPSVYLAGASGGVYALITAHVATIII 267

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860265|ref|XP_003705611.1| PREDICTED: rhomboid-related protein 3-like [Megachile rotundata]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 122/164 (74%), Gaps = 1/164 (0%)

Query: 143 YVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDT 202
           YV+  V  R       R    PDG YE+EYTC PP + MI IS +EI  FLYD +IV  T
Sbjct: 108 YVQSMVPQRPSSLQLTRSSDYPDGQYEEEYTCKPPALAMIIISMLEIILFLYD-VIVYKT 166

Query: 203 YSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRV 262
            S+ GP A   IYNP  R + WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRV
Sbjct: 167 PSVEGPAATLFIYNPHKRYQAWRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRV 226

Query: 263 LIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIM 306
           LIIY+ GV+AGSL TS++DP V+LAGASGGVYALI AHVATI+M
Sbjct: 227 LIIYIAGVVAGSLGTSVSDPVVYLAGASGGVYALITAHVATILM 270

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087949|ref|XP_972541.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270012034|gb|EFA08482.1| hypothetical protein TcasGA2_TC006133 [Tribolium castaneum]

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 122/168 (72%), Gaps = 8/168 (4%)

Query: 140 LNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIV 199
           +N Y+ + VVPR R   +V      DG Y+D+Y+C PP V MI IS +E+ FF  D  I 
Sbjct: 92  VNRYI-QMVVPRRRGASEV------DGAYDDQYSCYPPAVGMIIISLIEVIFFCVDEAIE 144

Query: 200 GD-TYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHR 258
            D T S  GP++   IY+P+ R E WRF+TYM VHVG FHL VNLLVQILLG PLEMVHR
Sbjct: 145 ADSTKSASGPISSVFIYDPYKRQEAWRFITYMFVHVGAFHLFVNLLVQILLGTPLEMVHR 204

Query: 259 WWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIM 306
           WWRVL+IY  GVLAGSLATSI DP V LAGASGGVY+LI AH+ATIIM
Sbjct: 205 WWRVLLIYFAGVLAGSLATSIADPTVRLAGASGGVYSLITAHIATIIM 252

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490373|ref|XP_001606093.2| PREDICTED: rhomboid-related protein 3-like [Nasonia vitripennis]

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG+YE+EY+C PP + MI IS +EI  FLYD  I  +  ++ GPMA   IYNP  R + 
Sbjct: 143 PDGLYEEEYSCNPPALAMIIISVLEIILFLYDT-IAHNAVAVEGPMATLFIYNPQKRYQA 201

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVLIIY  GV+AGSL TS++DP 
Sbjct: 202 WRYLTYMFVHVGTFHLVVNLLVQIMLGIPLEMVHKWWRVLIIYFAGVVAGSLGTSVSDPA 261

Query: 284 VFLAGASGGVYALIAAHVATIIMVRSLLK 312
           V+LAGASGGVYALI AHVATI+M  S ++
Sbjct: 262 VYLAGASGGVYALITAHVATIVMNWSQME 290

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718076|ref|XP_003397498.1| PREDICTED: rhomboid-related protein 3-like isoform 1 [Bombus terrestris]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 115/143 (80%), Gaps = 1/143 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG YE+EY+C PP + MI IS +EI  FLYD +IV  + S+ GP A   IYNP  R + 
Sbjct: 146 PDGQYEEEYSCKPPALAMIIISILEITLFLYD-VIVYKSPSVEGPAATLFIYNPHKRYQA 204

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVL IY+ GV+AGSL TS++DP 
Sbjct: 205 WRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRVLTIYIAGVVAGSLGTSVSDPT 264

Query: 284 VFLAGASGGVYALIAAHVATIIM 306
           V+LAGASGGVYALI AHVATI+M
Sbjct: 265 VYLAGASGGVYALITAHVATIVM 287

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718078|ref|XP_003397499.1| PREDICTED: rhomboid-related protein 3-like isoform 2 [Bombus terrestris]

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 115/143 (80%), Gaps = 1/143 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG YE+EY+C PP + MI IS +EI  FLYD +IV  + S+ GP A   IYNP  R + 
Sbjct: 139 PDGQYEEEYSCKPPALAMIIISILEITLFLYD-VIVYKSPSVEGPAATLFIYNPHKRYQA 197

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVL IY+ GV+AGSL TS++DP 
Sbjct: 198 WRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRVLTIYIAGVVAGSLGTSVSDPT 257

Query: 284 VFLAGASGGVYALIAAHVATIIM 306
           V+LAGASGGVYALI AHVATI+M
Sbjct: 258 VYLAGASGGVYALITAHVATIVM 280

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718080|ref|XP_003397500.1| PREDICTED: rhomboid-related protein 3-like isoform 3 [Bombus terrestris]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 115/143 (80%), Gaps = 1/143 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG YE+EY+C PP + MI IS +EI  FLYD +IV  + S+ GP A   IYNP  R + 
Sbjct: 122 PDGQYEEEYSCKPPALAMIIISILEITLFLYD-VIVYKSPSVEGPAATLFIYNPHKRYQA 180

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVL IY+ GV+AGSL TS++DP 
Sbjct: 181 WRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRVLTIYIAGVVAGSLGTSVSDPT 240

Query: 284 VFLAGASGGVYALIAAHVATIIM 306
           V+LAGASGGVYALI AHVATI+M
Sbjct: 241 VYLAGASGGVYALITAHVATIVM 263

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400135|ref|XP_003485749.1| PREDICTED: rhomboid-related protein 3-like isoform 1 [Bombus impatiens]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 115/143 (80%), Gaps = 1/143 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG YE+EY+C PP + MI IS +EI  FLYD +IV  + S+ GP A   IYNP  R + 
Sbjct: 146 PDGQYEEEYSCKPPALAMIIISILEITLFLYD-VIVYKSPSVEGPAATLFIYNPHKRYQA 204

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVL IY+ GV+AGSL TS++DP 
Sbjct: 205 WRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRVLTIYIAGVVAGSLGTSVSDPT 264

Query: 284 VFLAGASGGVYALIAAHVATIIM 306
           V+LAGASGGVYALI AHVATI+M
Sbjct: 265 VYLAGASGGVYALITAHVATILM 287

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400137|ref|XP_003485750.1| PREDICTED: rhomboid-related protein 3-like isoform 2 [Bombus impatiens]

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 115/143 (80%), Gaps = 1/143 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG YE+EY+C PP + MI IS +EI  FLYD +IV  + S+ GP A   IYNP  R + 
Sbjct: 122 PDGQYEEEYSCKPPALAMIIISILEITLFLYD-VIVYKSPSVEGPAATLFIYNPHKRYQA 180

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVL IY+ GV+AGSL TS++DP 
Sbjct: 181 WRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRVLTIYIAGVVAGSLGTSVSDPT 240

Query: 284 VFLAGASGGVYALIAAHVATIIM 306
           V+LAGASGGVYALI AHVATI+M
Sbjct: 241 VYLAGASGGVYALITAHVATILM 263

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787426|gb|EFZ13514.1| hypothetical protein SINV_04339 [Solenopsis invicta]

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 117/143 (81%), Gaps = 1/143 (0%)

Query: 164 PDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEV 223
           PDG+YE+EY+C PP V MI IS +EI  F+YD +I   + S+ GP A+  IYNP  R E 
Sbjct: 183 PDGLYEEEYSCRPPAVAMIIISIIEIILFMYD-VIKHKSLSVEGPAAQLFIYNPHKRYEA 241

Query: 224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
           WR++TYM VHVG FHLVVNLLVQI+LGIPLEMVH+WWRVLIIY+ GVLAGSL TS++DP 
Sbjct: 242 WRYLTYMFVHVGVFHLVVNLLVQIMLGIPLEMVHKWWRVLIIYIAGVLAGSLGTSVSDPT 301

Query: 284 VFLAGASGGVYALIAAHVATIIM 306
           V+LAGASGGVYALI AHVATIIM
Sbjct: 302 VYLAGASGGVYALITAHVATIIM 324

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
FB|FBgn0030318	417	rho-4 "rhomboid-4" [Drosophila	0.523	0.398	0.521	9.3e-43
FB|FBgn0020248	485	stet "stem cell tumor" [Drosop	0.485	0.317	0.477	6.3e-37
UNIPROTKB|P58872	404	RHBDL3 "Rhomboid-related prote	0.466	0.366	0.450	8.5e-33
UNIPROTKB|Q495Y4	306	RHBDL3 "cDNA FLJ42579 fis, clo	0.466	0.483	0.450	8.5e-33
UNIPROTKB|Q495Y5	396	RHBDL3 "RHBDL3 protein" [Homo	0.466	0.373	0.450	8.5e-33
UNIPROTKB|F1NQJ7	360	RHBDL3 "Uncharacterized protei	0.463	0.408	0.460	1.8e-32
UNIPROTKB|F1MBG2	381	RHBDL3 "Uncharacterized protei	0.466	0.388	0.443	3.7e-32
UNIPROTKB|F1PPT6	306	RHBDL3 "Uncharacterized protei	0.463	0.480	0.447	6e-32
WB|WBGene00004401	435	rom-2 [Caenorhabditis elegans	0.580	0.422	0.371	9.8e-32
MGI|MGI:2179276	404	Rhbdl3 "rhomboid, veinlet-like	0.463	0.363	0.440	1.1e-30

FB|FBgn0030318 rho-4 "rhomboid-4" [Drosophila melanogaster (taxid:7227)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 95/182 (52%), Positives = 116/182 (63%)

Query:   136 KW---NRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFF 192
             KW   N L  Y R  V P     P+     EPDG YE + +  PPP+ M+  S +EI  F
Sbjct:   139 KWMVRNMLTRYCRYVVPP-----PKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMF 193

Query:   193 LYDAMIVGD--TY------SLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLL 244
             L D +   D   Y      S  GP A   IYNP+ R E WRF++YM VHVG  HL++NL+
Sbjct:   194 LVDVIHFQDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMMNLI 253

Query:   245 VQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATI 304
             +QI LGI LE+VH WWRV ++YL GVLAGS+ TS+T P +FLAGASGGVYALI AH+ATI
Sbjct:   254 IQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASGGVYALITAHIATI 313

Query:   305 IM 306
             IM
Sbjct:   314 IM 315

GO:0005886 "plasma membrane" evidence=NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0020248 stet "stem cell tumor" [Drosophila melanogaster (taxid:7227)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 75/157 (47%), Positives = 104/157 (66%)

Query:   152 HRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAK 211
             H +  ++  +      Y D YTC PPP  +I ++ VE+GFF+Y +++ G+  + RGP+  
Sbjct:   196 HAVAMEILPEERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEA-APRGPIPS 254

Query:   212 T--LIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVG 269
                 IY P  R E+WRF+ YM++H G  HL  N+ VQ++ G+PLEMVH   R+  IY  G
Sbjct:   255 DSMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGSTRIACIYFSG 314

Query:   270 VLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIM 306
             VLAGSL TSI DP VFL GASGGVYAL+AAH+A +++
Sbjct:   315 VLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLL 351

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P58872 RHBDL3 "Rhomboid-related protein 3" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/151 (45%), Positives = 106/151 (70%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGD-TYSLRGP--MAKTLIYNPFHRAEVW 224
             Y D YTC PPP  MI ++ +E+ FFLY+ + +G     +  P  +  +L+Y+P  RA+VW
Sbjct:   153 YYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVW 212

Query:   225 RFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV 284
             R++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D   
Sbjct:   213 RYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTA 272

Query:   285 FLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
              + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   273 PVVGSSGGVYALVSAHLANIVMNWSGMKCQF 303

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q495Y4 RHBDL3 "cDNA FLJ42579 fis, clone BRACE3008384, highly similar to Rhomboid-related protein 4 (EC 3.4.21.105)" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/151 (45%), Positives = 106/151 (70%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGD-TYSLRGP--MAKTLIYNPFHRAEVW 224
             Y D YTC PPP  MI ++ +E+ FFLY+ + +G     +  P  +  +L+Y+P  RA+VW
Sbjct:    55 YYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVW 114

Query:   225 RFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV 284
             R++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D   
Sbjct:   115 RYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTA 174

Query:   285 FLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
              + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   175 PVVGSSGGVYALVSAHLANIVMNWSGMKCQF 205

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q495Y5 RHBDL3 "RHBDL3 protein" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/151 (45%), Positives = 106/151 (70%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGD-TYSLRGP--MAKTLIYNPFHRAEVW 224
             Y D YTC PPP  MI ++ +E+ FFLY+ + +G     +  P  +  +L+Y+P  RA+VW
Sbjct:   145 YYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVW 204

Query:   225 RFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV 284
             R++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D   
Sbjct:   205 RYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTA 264

Query:   285 FLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
              + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   265 PVVGSSGGVYALVSAHLANIVMNWSGMKCQF 295

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NQJ7 RHBDL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 70/152 (46%), Positives = 106/152 (69%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLR--GPM--AKTLIYNPFHRAEV 223
             Y D YTC PPP  MI I+ VE+ FFLY+ +++ D + L+   P+     L+Y+P  RA+ 
Sbjct:   109 YYDSYTCCPPPWFMITITIVEVAFFLYNGVVL-DRFVLQVTHPLYLKNALLYHPQLRAQA 167

Query:   224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
             WR++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+  +Y+ GV+AGSLA S+ D  
Sbjct:   168 WRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGAARISFVYVAGVVAGSLAVSVADMT 227

Query:   284 VFLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
               + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   228 APVVGSSGGVYALVSAHLANIVMNWSGMKCQF 259

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MBG2 RHBDL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 67/151 (44%), Positives = 104/151 (68%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGD-TYSLRGP--MAKTLIYNPFHRAEVW 224
             Y D YTC PPP  MI ++ +E+ FFLY+ + +G     +  P  +   L+Y+P  RA+ W
Sbjct:   130 YYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNPLVYHPQLRAQAW 189

Query:   225 RFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV 284
             R++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D   
Sbjct:   190 RYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTA 249

Query:   285 FLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
              + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   250 PVVGSSGGVYALVSAHLANIVMNWSGMKCQF 280

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1PPT6 RHBDL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/152 (44%), Positives = 107/152 (70%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLR--GP--MAKTLIYNPFHRAEV 223
             Y D YTC PPP  MI ++ +E+ FFLY+ + + D + L+   P  +  +L+Y+P  RA+ 
Sbjct:    55 YYDSYTCCPPPWFMITVTVLEVAFFLYNGVSL-DQFVLQVTHPRYLKNSLVYHPQLRAQA 113

Query:   224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
             WR++TY+ +H G  HL +N+++Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D  
Sbjct:   114 WRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMT 173

Query:   284 VFLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
               + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   174 APVVGSSGGVYALVSAHLANIVMNWSGMKCQF 205

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

WB|WBGene00004401 rom-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 74/199 (37%), Positives = 122/199 (61%)

Query:   112 MLVHVGIWENAAQDEADVV-VIRKPKWNRLNSYVRK---TVVPRHRIQPQVRHKVEPDGI 167
             M +++ + E    D AD   ++ K K  RL  Y+ +   TV P+++ +  V  +++    
Sbjct:    60 MSLYLEMREGKPVDFADFCYLMSKCKGYRLREYLFRAALTVTPKNQ-RIHVFSELQ---- 114

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMA--KTLIYNPFHRAEVWR 225
                 Y C+PPP+ +IF+S V++ F+LY  +   +   L GP+     LI + +H  E+WR
Sbjct:   115 ---RYKCVPPPIFLIFLSIVQLAFYLYYVVDSSEGVWLSGPIPTMSPLIVSQYHLPELWR 171

Query:   226 FMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVF 285
               TY L++VG FH++ N+L+Q+ +G+PLE+VHRW R+ I+Y +GVL GS+ +   DP VF
Sbjct:   172 LFTYCLINVGIFHIIFNILIQLAIGVPLELVHRW-RIYILYFMGVLFGSILSLALDPTVF 230

Query:   286 LAGASGGVYALIAAHVATI 304
             L G + G ++LIA+H+ TI
Sbjct:   231 LCGGAAGSFSLIASHITTI 249

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2179276 Rhbdl3 "rhomboid, veinlet-like 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 67/152 (44%), Positives = 105/152 (69%)

Query:   168 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLR--GP--MAKTLIYNPFHRAEV 223
             Y D YTC PPP  MI I+ +E+  FLY+ +++ D + L+   P  +  +L+Y+P  RA+ 
Sbjct:   153 YYDSYTCCPPPWFMITITLLEVALFLYNGVLL-DQFVLQVTHPRYLKNSLVYHPQLRAQA 211

Query:   224 WRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPH 283
             WR++TY+ +H G   L +N+ +Q+L+G+PLEMVH   R+ ++Y+ GV+AGSLA S+ D  
Sbjct:   212 WRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMT 271

Query:   284 VFLAGASGGVYALIAAHVATIIMVRSLLKQQW 315
               + G+SGGVYAL++AH+A I+M  S +K Q+
Sbjct:   272 APVVGSSGGVYALVSAHLANIVMNWSGMKCQF 303

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2AGA4	RHBL2_MOUSE	3, ., 4, ., 2, 1, ., 1, 0, 5	0.5103	0.4227	0.4437	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.105	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	317
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	3e-26
COG0705	228	COG0705, COG0705, Membrane associated serine prote	3e-13
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	3e-08
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	7e-05
PRK10907	276	PRK10907, PRK10907, intramembrane serine protease	0.001

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  100 bits (252), Expect = 3e-26
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 217 PFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLA 276
              R ++WR +T M +H G  HL+ N+L  +  GIPLE +    R L++YL+  LAGSL 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 277 TSITDPHVF-LAGASGGVYALIAAHVATIIMVRSLLKQQWDF 317
           + +  P      GASG ++ L+ A +  +   R LL      
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGA 102

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 175 IPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYN-PFHRAEVWRFMTYMLVH 233
           +   +I++ I    +   L  + I   T+  R      L       R ++WR +T + +H
Sbjct: 19  VTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLH 78

Query: 234 VGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVF--LAGASG 291
            G  HL+ N+L   + G  LE      R L+ YL+  L   LA  +  P       GASG
Sbjct: 79  AGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASG 138

Query: 292 GVYALIAA 299
            ++ L+ A
Sbjct: 139 AIFGLLGA 146

Length = 228

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 218 FHRA-----EVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLA 272
           + RA     E WR +T   VH+  +HL++NL   +LL +  E   R  R+L++ L+  L 
Sbjct: 6   YDRAAILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLL 65

Query: 273 GSLATSITDPHV-FLAGASGGVYALIAA 299
            SL   +  P + +  G SG ++ L A 
Sbjct: 66  ISLGLLLFLPSLQWYVGLSGVLHGLFAW 93

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 215 YNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGS 274
            +P  ++++WR+ T  L+H    H++ NLL    LG  +E      ++L+++LV  L  +
Sbjct: 127 ADPSQQSQLWRWFTPALLHFSLLHIIFNLLWWWYLGGQIEKRLGSGKLLVLFLVSALLSN 186

Query: 275 LATSITDPHVFLAGASGGVYALI 297
            A  +     F  G SG VYAL+
Sbjct: 187 WAQYLVSGPNF-GGLSGVVYALV 208

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 215 YNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGS 274
           ++P  + E+WR+ T+ L+H    H++ NLL    LG  +E      ++++I L+  L   
Sbjct: 127 FDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSG 186

Query: 275 LATSITDPHVFLAGASGGVYALI 297
              S      +  G SG VYAL+
Sbjct: 187 WVQSKFS-GPWFGGLSGVVYALM 208

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG2289|consensus	316		100.0
PTZ00101	278	rhomboid-1 protease; Provisional	99.92
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.85
COG0705	228	Membrane associated serine protease [Amino acid tr	99.78
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.73
KOG2290|consensus	652		99.43
KOG2289|consensus	316		99.15
KOG2632|consensus	258		98.94
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.22
COG0705	228	Membrane associated serine protease [Amino acid tr	97.98
PTZ00101	278	rhomboid-1 protease; Provisional	97.76
KOG2980|consensus	310		97.67
KOG0858|consensus	239		97.01
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	96.97
PRK10907	276	intramembrane serine protease GlpG; Provisional	95.97
KOG2890|consensus	326		95.73
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	95.16
KOG2290|consensus	652		93.17
KOG4463|consensus	323		92.28
COG5291	313	Predicted membrane protein [Function unknown]	91.07

>KOG2289|consensus

Probab=100.00  E-value=5.1e-34  Score=271.53  Aligned_cols=176  Identities=36%  Similarity=0.640  Sum_probs=149.8

Q ss_pred             ccchhhhhhhheeeeccCCCCCcccccccCCCccchhcccCCCCchhHHHHHHHHHHhhheeeEeeCCcccccCcccccc
Q psy17558         16 KPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTL   95 (317)
Q Consensus        16 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~c~ppp~f~i~is~~ei~~f~y~~~~~~~~~~~~~~~~s~l   95 (317)
                      ..+.++.++.++.+.+|++.          ++.+|.|.++|||||+||+++|++|+++|.||++..++....++      
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~------   99 (316)
T KOG2289|consen   36 RSWTKWLIPRFAVANVPEFI----------VVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSS------   99 (316)
T ss_pred             chhhHHHHhHHHhhccchhh----------eeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCC------
Confidence            44456778888888888874          58899999999999999999999999999999876533211110      


Q ss_pred             eecCchhhHHHHHHHHHHHhhhhccccccchhhhhhhcccccccccccccccccccCCCCcccccccCCCCcchhhcccC
Q psy17558         96 IYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCI  175 (317)
Q Consensus        96 ~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~l~~~~kwrr~~~Yv~~~vlP~~~~~~~v~~~~~~~~~y~~~~~~~  175 (317)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (316)
T KOG2289|consen  100 --------------------------------------------------------------------------------   99 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHH
Q psy17558        176 PPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEM  255 (317)
Q Consensus       176 ~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~  255 (317)
                                                  .......+..+++|.+++|+||++||||+|+|+.||++||+.|+++|..+|.
T Consensus       100 ----------------------------~~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~  151 (316)
T KOG2289|consen  100 ----------------------------LTLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQ  151 (316)
T ss_pred             ----------------------------CCccccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHh
Confidence                                        0111234455677777888888888888899999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhccccCCCC
Q psy17558        256 VHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQW  315 (317)
Q Consensus       256 ~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~~~m~~~~  315 (317)
                      .+|.+|+.++|++||++||+++++++++.++||||||+|||+||+++++++||++|+..+
T Consensus       152 ~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~  211 (316)
T KOG2289|consen  152 VHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLGAHLSNLLTNWTIMKNKF  211 (316)
T ss_pred             hcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHHHHHHHHHhhHHHhcchH
Confidence            999999999999999999999999999999999999999999999999999999998764

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.92  E-value=1.3e-24  Score=205.07  Aligned_cols=166  Identities=17%  Similarity=0.270  Sum_probs=129.1

Q ss_pred             cccccCCCCcccccccC--CCCcchhh----cccCCCCeehhHHHHHHhhhhHHhhhhcccccccccc----ccc-cccc
Q psy17558        147 TVVPRHRIQPQVRHKVE--PDGIYEDE----YTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGP----MAK-TLIY  215 (317)
Q Consensus       147 ~vlP~~~~~~~v~~~~~--~~~~y~~~----~~~~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~----~~~-~~~~  215 (317)
                      +..|-++.|.+..+++.  +++...++    +.+...+.++..|+++|+++|++....+.+.  ..++    ... ...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~--~l~p~~~~L~~~Ga~~   93 (278)
T PTZ00101         16 ENTPFNRAEKYYQSQSSFIQRSKPIDVLNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPAD--FLTPSDSLLVTLGANV   93 (278)
T ss_pred             ccCcccchhhcccccccccccCCChHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCCHHHHHHHhCcc
Confidence            45666655555555544  45554444    5555668888889999999999887643221  1111    111 1122


Q ss_pred             cCC-CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHH
Q psy17558        216 NPF-HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVY  294 (317)
Q Consensus       216 ~p~-~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~  294 (317)
                      .|. .++|+||++|++|+|.|+.|+++||++++.+|..+|+.+|++|++++|++||++|++++..+.+...++||||++|
T Consensus        94 ~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAif  173 (278)
T PTZ00101         94 ASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGM  173 (278)
T ss_pred             hhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHH
Confidence            232 4799999999999999999999999999999999999999999999999999999999999888778999999999


Q ss_pred             HHHHHHHHHHHHhccccCCC
Q psy17558        295 ALIAAHVATIIMVRSLLKQQ  314 (317)
Q Consensus       295 gLlga~~~~~~~~~~~m~~~  314 (317)
                      |++|++++..+++|+.++.+
T Consensus       174 GLiGa~~~~lil~w~~~~~~  193 (278)
T PTZ00101        174 GLLGIVTSELILLWHVIRHR  193 (278)
T ss_pred             HHHHHHHHHHHHHHHhhccH
Confidence            99999999999998877643

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.85  E-value=2.6e-21  Score=182.57  Aligned_cols=193  Identities=19%  Similarity=0.255  Sum_probs=128.1

Q ss_pred             hhhHHHHHHHHHHHhhhhccccccc-hhhhhhhcccccccc----cccccccccccCCCCccccc----------ccCCC
Q psy17558        101 HRAEVWRFMTYMLVHVGIWENAAQD-EADVVVIRKPKWNRL----NSYVRKTVVPRHRIQPQVRH----------KVEPD  165 (317)
Q Consensus       101 ~r~e~WRf~tym~~h~g~~Hl~~~~-~~~~~l~~~~kwrr~----~~Yv~~~vlP~~~~~~~v~~----------~~~~~  165 (317)
                      .-..+..|..||--+ |+.|-..+. -.++.|....+-..+    .++.++.--|+     |-..          .+..+
T Consensus         9 ~~~~a~~f~dyl~~~-~i~~~~~~~~~~~lwl~d~~~~~~~~~~~~~f~~~p~~~~-----y~~asw~~g~~~~~~~~~~   82 (276)
T PRK10907          9 NPRLAQAFVDYMATQ-GVILTIQQHNQSDIWLADESQAERVRAELARFLENPADPR-----YLAASWQSGHTNSGLRYRR   82 (276)
T ss_pred             CHHHHHHHHHHHHHC-CCcEEEecCCceEEEecCHHHHHHHHHHHHHHHhCCCchh-----HHhcccccCCCCCCccccc
Confidence            345788899999988 888854321 111223322222211    12222111111     1111          11223


Q ss_pred             CcchhhcccCCCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHH
Q psy17558        166 GIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLV  245 (317)
Q Consensus       166 ~~y~~~~~~~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~  245 (317)
                      ....++.+.+..|++.. ++++|+++|+++...+.....    ....+..++...+|+||++|++|+|.|+.|+++||+.
T Consensus        83 ~~~~~~~~~~~~p~T~~-li~i~i~vf~l~~~~~~~~~~----~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~  157 (276)
T PRK10907         83 FPFLATLRERAGPLTLG-VMIACVVVFILMQILGDQTVM----LWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLW  157 (276)
T ss_pred             chHHHhhccCCCCHHHH-HHHHHHHHHHHHHHhccHHHH----HHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHH
Confidence            44555555556676655 457899999987664322100    0001112233578999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHH
Q psy17558        246 QILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATII  305 (317)
Q Consensus       246 L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~  305 (317)
                      ++.+|..+|+.+|+++++.+|++++++|+++++++.. ...+|+||++||++|+......
T Consensus       158 l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~  216 (276)
T PRK10907        158 WWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGE  216 (276)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999888765 3578999999999998765543

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.78  E-value=4.2e-19  Score=161.99  Aligned_cols=133  Identities=28%  Similarity=0.419  Sum_probs=103.5

Q ss_pred             eehhHHHHHHhhhhHHhhhhcccccccc-------ccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHH
Q psy17558        179 VIMIFISAVEIGFFLYDAMIVGDTYSLR-------GPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGI  251 (317)
Q Consensus       179 v~~~lI~ii~i~vFi~~~~~~~~~~~~~-------g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~  251 (317)
                      ..+..+.++|+++|+++...+.......       +..+....... .+.|+||++|++|+|+|+.|+++||+.++.+|.
T Consensus        18 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg~   96 (228)
T COG0705          18 PVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGAL-ARDQLWRLITAIFLHAGFLHLLFNMLALWVFGS   96 (228)
T ss_pred             hHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccc-cccchHHHHHHHHHHhhHHHHHHHHHHHHHhhH
Confidence            3445555899999999887654421111       11111111111 122899999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCC--ceechHHHHHHHHHHHHHHHHHhccccC
Q psy17558        252 PLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV--FLAGASGGVYALIAAHVATIIMVRSLLK  312 (317)
Q Consensus       252 ~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~--~~vGASGav~gLlga~~~~~~~~~~~m~  312 (317)
                      .+|+.+|+.+++.+|+++|+.+++++..+.+..  +++||||+++|++|+++...-..+..+.
T Consensus        97 ~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~  159 (228)
T COG0705          97 NLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLL  159 (228)
T ss_pred             HHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhh
Confidence            999999999999999999999999999888764  7999999999999999988766555443

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.73  E-value=1.7e-17  Score=139.79  Aligned_cols=94  Identities=32%  Similarity=0.449  Sum_probs=81.0

Q ss_pred             CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCC-ceechHHHHHHHH
Q psy17558        219 HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV-FLAGASGGVYALI  297 (317)
Q Consensus       219 ~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~-~~vGASGav~gLl  297 (317)
                      +++|+||++||+|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+++++++++...++.+.. ..+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            468999999999999999999999999999999999999999999999999999999998887765 8899999999999


Q ss_pred             HHHHHHHHHhccccC
Q psy17558        298 AAHVATIIMVRSLLK  312 (317)
Q Consensus       298 ga~~~~~~~~~~~m~  312 (317)
                      +++......+++++.
T Consensus        82 ~~~~~~~~~~~~~~~   96 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLR   96 (145)
T ss_dssp             HHHHHHHHCCCCCS-
T ss_pred             HHHHHHHhhccchhh
Confidence            999999998877665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2290|consensus

Probab=99.43  E-value=3.2e-14  Score=139.76  Aligned_cols=103  Identities=25%  Similarity=0.505  Sum_probs=98.1

Q ss_pred             cccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHH
Q psy17558        214 IYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGV  293 (317)
Q Consensus       214 ~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav  293 (317)
                      .++|+..+|++|++||.|+|+|+.|++..+.++..+-..+|+..|+.|+.++|++||+.|++++.+|-|..+.||.||+-
T Consensus       442 Fln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ  521 (652)
T KOG2290|consen  442 FLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQ  521 (652)
T ss_pred             ccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccc
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccCCCCC
Q psy17558        294 YALIAAHVATIIMVRSLLKQQWD  316 (317)
Q Consensus       294 ~gLlga~~~~~~~~~~~m~~~~~  316 (317)
                      +|+++..++.++.+|+-++++|+
T Consensus       522 ~Gila~l~vEl~qs~~il~~~w~  544 (652)
T KOG2290|consen  522 FGILACLFVELFQSWQILERPWR  544 (652)
T ss_pred             cchHHHHHHHHHhhhHhhhhHHH
Confidence            99999999999999999988764

>KOG2289|consensus

Probab=99.15  E-value=1.2e-11  Score=118.54  Aligned_cols=60  Identities=28%  Similarity=0.455  Sum_probs=54.3

Q ss_pred             ccCcccccceecCchhhHHHHHHHHHHHhhhhccccccchhhhh----hhcc-cccccccccccc
Q psy17558         87 LRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVV----VIRK-PKWNRLNSYVRK  146 (317)
Q Consensus        87 ~~~~~~s~l~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l~~~-~kwrr~~~Yv~~  146 (317)
                      ...++.+++||+|.+|.|+|||+|||++|||++|+..|.+.|++    ||.. +-||....|+.-
T Consensus       101 ~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~g  165 (316)
T KOG2289|consen  101 TLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAG  165 (316)
T ss_pred             CccccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhh
Confidence            44688999999999999999999999999999999999999876    8877 559999999874

>KOG2632|consensus

Probab=98.94  E-value=2e-09  Score=100.11  Aligned_cols=115  Identities=23%  Similarity=0.294  Sum_probs=85.5

Q ss_pred             CCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCC---CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHH
Q psy17558        177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF---HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPL  253 (317)
Q Consensus       177 ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~---~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~l  253 (317)
                      .|..+..+...+.++++......         .. .....|.   .+.|+||++||.++|.+..|+++||+.+|.+|...
T Consensus        14 ~p~~ts~~~~~~~~i~lv~~~~~---------i~-~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~f   83 (258)
T KOG2632|consen   14 IPLLTSIVVVLAILIYLVSFFPG---------IV-EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQF   83 (258)
T ss_pred             chHHHHHHHHHHHHHHHHhccch---------hh-hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHH
Confidence            34455555567777777654422         11 1111221   47899999999999999999999999999999999


Q ss_pred             HHhhc-hHHHHHHHHHHHHHHHHHHHhhc------C---CCceechHHHHHHHHHHHH
Q psy17558        254 EMVHR-WWRVLIIYLVGVLAGSLATSITD------P---HVFLAGASGGVYALIAAHV  301 (317)
Q Consensus       254 E~~~G-~~r~l~iyl~~gl~gsl~~~l~~------p---~~~~vGASGav~gLlga~~  301 (317)
                      |+.+| +.+++.+..+-++..++...+..      .   ....+|-||..||.++.-.
T Consensus        84 E~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~  141 (258)
T KOG2632|consen   84 ERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLE  141 (258)
T ss_pred             HhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHh
Confidence            99999 88888888888888887776542      1   1336899999999988743

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.22  E-value=2e-06  Score=69.74  Aligned_cols=76  Identities=22%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             chhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh--------c-CC---Cceech
Q psy17558        222 EVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSIT--------D-PH---VFLAGA  289 (317)
Q Consensus       222 e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~--------~-p~---~~~vGA  289 (317)
                      ..|+++|+.|++.++..++.|.+.++..|+.+|+.+|+++++.+.++.++++++...+.        + ..   .+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            46999999999999999999999999999999999999999999998888888776542        1 21   234567


Q ss_pred             HHHHHHHH
Q psy17558        290 SGGVYALI  297 (317)
Q Consensus       290 SGav~gLl  297 (317)
                      +|.+.|++
T Consensus        87 ~~~~~g~l   94 (99)
T PF08551_consen   87 MGVLAGFL   94 (99)
T ss_pred             HHhHhheE
Confidence            77666654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=97.98  E-value=7.9e-06  Score=74.57  Aligned_cols=78  Identities=14%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHH
Q psy17558        219 HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIA  298 (317)
Q Consensus       219 ~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlg  298 (317)
                      ..+++++++++.++|....|...+...             ..+...+++...+..++.....++. .+++.++-+.|+++
T Consensus       136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~-~~va~~aHl~G~i~  201 (228)
T COG0705         136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG-PSVAWSAHLGGLIG  201 (228)
T ss_pred             hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence            478999999999999999998888765             4555667777777777777766654 57899999999998


Q ss_pred             HHHHHHHHhccc
Q psy17558        299 AHVATIIMVRSL  310 (317)
Q Consensus       299 a~~~~~~~~~~~  310 (317)
                      +.+...+..++.
T Consensus       202 G~l~~~~~~~~~  213 (228)
T COG0705         202 GLLLAALLSRKL  213 (228)
T ss_pred             HHHHHHHHhhhh
Confidence            888887766654

>PTZ00101 rhomboid-1 protease; Provisional

Probab=97.76  E-value=7.8e-06  Score=77.77  Aligned_cols=83  Identities=14%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             CchhHHHHHHHHHHhhheeeEeeCCc-cccc-------CcccccceecCchhhHHHHHHHHHHHhhhhccccccchhhhh
Q psy17558         59 PPVIMIFISAVEIGFFLYDAMIVGDT-YSLR-------GPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVV  130 (317)
Q Consensus        59 pp~f~i~is~~ei~~f~y~~~~~~~~-~~~~-------~~~~s~l~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~  130 (317)
                      -|-++..|+++|+++|+......++. ..++       |-...+++    ++.|.||++|+||+|+|+.|+..|.+.+..
T Consensus        52 i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i----~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~  127 (278)
T PTZ00101         52 WKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI----KQGEIHRLILPIFLHANIFHTFFNVFFQLR  127 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh----hcCCCHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            78999999999999998754321111 1111       11122222    357999999999999999999999987644


Q ss_pred             ----hhcc-ccccccccccc
Q psy17558        131 ----VIRK-PKWNRLNSYVR  145 (317)
Q Consensus       131 ----l~~~-~kwrr~~~Yv~  145 (317)
                          +|.. ++||-...|+.
T Consensus       128 ~G~~lE~~~G~~r~~ilYl~  147 (278)
T PTZ00101        128 MGFTLEKNYGIVKIIILYFL  147 (278)
T ss_pred             HHHHHHHHHChHHHHHHHHH
Confidence                4444 67777667765

>KOG2980|consensus

Probab=97.67  E-value=9.5e-06  Score=77.27  Aligned_cols=119  Identities=18%  Similarity=0.187  Sum_probs=85.8

Q ss_pred             eehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHH-HHHHhh
Q psy17558        179 VIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGI-PLEMVH  257 (317)
Q Consensus       179 v~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~-~lE~~~  257 (317)
                      ++.. +.++|+++|........+-     .....++.++...--.|.+++|.|.|.+.+|+..||+.+..++. .+--.+
T Consensus       117 ~v~~-ll~~n~~vf~lWrv~~~~~-----~~~~~mls~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~  190 (310)
T KOG2980|consen  117 VVFG-LLIANAFVFTLWRVPQKQF-----TMIPWMLSRNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSL  190 (310)
T ss_pred             chhH-HHHHHHHHHHHHHhcchhh-----hhhhHHhhcccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCc
Confidence            4444 4478999998876644321     12222344444445567799999999999999999999998887 788888


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhh----cCCCceechHHHHHHHHHHHHHH
Q psy17558        258 RWWRVLIIYLVGVLAGSLATSIT----DPHVFLAGASGGVYALIAAHVAT  303 (317)
Q Consensus       258 G~~r~l~iyl~~gl~gsl~~~l~----~p~~~~vGASGav~gLlga~~~~  303 (317)
                      |...+..+|+.++..|......-    .+..+++||||+++++++.....
T Consensus       191 ~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~l  240 (310)
T KOG2980|consen  191 GFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTL  240 (310)
T ss_pred             chhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhc
Confidence            99999999996665555444332    23366899999999999876543

>KOG0858|consensus

Probab=97.01  E-value=0.0046  Score=57.42  Aligned_cols=94  Identities=22%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             ccccccccCC---CcCchhhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHHHHhhc
Q psy17558        209 MAKTLIYNPF---HRAEVWRFMTYMLVHVG-GFHLVVNLLVQILLGIPLEMVHR---WWRVLIIYLVGVLAGSLATSITD  281 (317)
Q Consensus       209 ~~~~~~~~p~---~~~e~wRllT~~FlH~g-~~HLl~Nm~~L~~~G~~lE~~~G---~~r~l~iyl~~gl~gsl~~~l~~  281 (317)
                      .+..+.++|.   ++.|+||++|+.+.-+. -.|.++||+.++--.+.||+-.=   +..|+...+.+++.-.+.+    
T Consensus        36 sP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~----  111 (239)
T KOG0858|consen   36 SPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTG----  111 (239)
T ss_pred             CchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH----
Confidence            3445667775   69999999999888876 68999999999999999999642   4677777777766555333    


Q ss_pred             CCCceechHHHHHHHHHHHHHHHHHhccccCC
Q psy17558        282 PHVFLAGASGGVYALIAAHVATIIMVRSLLKQ  313 (317)
Q Consensus       282 p~~~~vGASGav~gLlga~~~~~~~~~~~m~~  313 (317)
                             .+..+..|.-++...+...|++..+
T Consensus       112 -------~~~~~~fLg~~l~~~l~YvWs~~Np  136 (239)
T KOG0858|consen  112 -------LFVYIVFLGQSLVFMLVYVWSKRNP  136 (239)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence                   2555566666677777777776543

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=96.97  E-value=0.0028  Score=57.09  Aligned_cols=69  Identities=17%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             cccccCC---CcCchhhhhhhhhccccH-HHHHHHHHHHHHHHHHHHHhh-c-h-HHHHHHHHHHHHHHHHHHHhh
Q psy17558        212 TLIYNPF---HRAEVWRFMTYMLVHVGG-FHLVVNLLVQILLGIPLEMVH-R-W-WRVLIIYLVGVLAGSLATSIT  280 (317)
Q Consensus       212 ~~~~~p~---~~~e~wRllT~~FlH~g~-~HLl~Nm~~L~~~G~~lE~~~-G-~-~r~l~iyl~~gl~gsl~~~l~  280 (317)
                      .+.++++   ++.|+||++|+.|.-++. .+.++|++.++..+..+|+.. + + ..++...+.++..-.+.+.+.
T Consensus        28 ~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~  103 (197)
T PF04511_consen   28 YLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI  103 (197)
T ss_pred             HeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455554   478999999999986654 699999999999999999983 2 2 457666666655555555443

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=95.97  E-value=0.0017  Score=61.83  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             cCchhhHHHHHHHHHHHhhhhccccccchhh
Q psy17558         98 NPFHRAEVWRFMTYMLVHVGIWENAAQDEAD  128 (317)
Q Consensus        98 ~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~  128 (317)
                      ++....|.||++|+||+|.|+.|+..|.+.-
T Consensus       128 ~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l  158 (276)
T PRK10907        128 DPSLKFELWRYFTHALLHFSLLHILFNLLWW  158 (276)
T ss_pred             cccccCCcHHHHhHHHHhCCHHHHHHHHHHH
Confidence            3445679999999999999999999999764

>KOG2890|consensus

Probab=95.73  E-value=0.012  Score=56.41  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=63.1

Q ss_pred             CchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH--------HHhhcCC----Cceec
Q psy17558        221 AEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLA--------TSITDPH----VFLAG  288 (317)
Q Consensus       221 ~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~--------~~l~~p~----~~~vG  288 (317)
                      ...|+++|+.|+-.+++-.+.|.+.+.+-|..+|..+|+..++.+|.+.-...++.        .++++..    .+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            36899999999999999999999999999999999999999988777543333322        2333433    34679


Q ss_pred             hHHHHHHHHHHH
Q psy17558        289 ASGGVYALIAAH  300 (317)
Q Consensus       289 ASGav~gLlga~  300 (317)
                      ..|.+.|++.|+
T Consensus       145 ~~gilaGilVa~  156 (326)
T KOG2890|consen  145 TTGILAGILVAW  156 (326)
T ss_pred             chHHHHHHHHHH
Confidence            999988887764

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.16  E-value=0.0019  Score=54.00  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             hhhHHHHHHHHHHHhhhhccccccchhhhh----hhcc-ccccccccccc
Q psy17558        101 HRAEVWRFMTYMLVHVGIWENAAQDEADVV----VIRK-PKWNRLNSYVR  145 (317)
Q Consensus       101 ~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l~~~-~kwrr~~~Yv~  145 (317)
                      ++.|.||++||.|+|.|+.|+..|......    +|.+ +.+|....|+.
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~   51 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLL   51 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHH
Confidence            568999999999999999999999987655    3333 55555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2290|consensus

Probab=93.17  E-value=0.2  Score=50.76  Aligned_cols=49  Identities=14%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             ecCchhhHHHHHHHHHHHhhhhccccccchhhhhhh----cc-ccccccccccc
Q psy17558         97 YNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVI----RK-PKWNRLNSYVR  145 (317)
Q Consensus        97 y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~l~----~~-~kwrr~~~Yv~  145 (317)
                      +||+.-.|..|..+-.|+|||+.|+..-...|...|    .- ++-|.++.|+.
T Consensus       443 ln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~  496 (652)
T KOG2290|consen  443 LNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFL  496 (652)
T ss_pred             cCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeec
Confidence            688888999999999999999999999888886644    33 55567778876

>KOG4463|consensus

Probab=92.28  E-value=0.18  Score=47.74  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=50.9

Q ss_pred             cCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q psy17558        220 RAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSI  279 (317)
Q Consensus       220 ~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l  279 (317)
                      ..|+||++.+.|.-.+-.-+.+-++.++.+ +.+|+.+|+.||..+.+.++..+.+....
T Consensus        48 y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~i  106 (323)
T KOG4463|consen   48 YFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVI  106 (323)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHH
Confidence            479999999999999999999988888777 78999999999998888888777766543

>COG5291 Predicted membrane protein [Function unknown]

Probab=91.07  E-value=0.85  Score=42.99  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=33.6

Q ss_pred             CcCchhhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHhh
Q psy17558        219 HRAEVWRFMTYMLVHVG-GFHLVVNLLVQILLGIPLEMVH  257 (317)
Q Consensus       219 ~~~e~wRllT~~FlH~g-~~HLl~Nm~~L~~~G~~lE~~~  257 (317)
                      ++-|+||++|+..+-++ -+-.++|++.++--...||+-+
T Consensus        56 k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~   95 (313)
T COG5291          56 KRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC   95 (313)
T ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc
Confidence            68899999998777765 5789999999999999999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-19
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	2e-19

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGG 236
            PV  + +    +  F+    I+GD   +         ++P  + E WR+ T+ L+H   
Sbjct: 4   GPVTWVMM-IACVVVFIA-MQILGDQEVMLWLAWP---FDPTLKFEFWRYFTHALMHFSL 58

Query: 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYAL 296
            H++ NLL    LG  +E      ++++I L+  L             F  G SG VYAL
Sbjct: 59  MHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-GGLSGVVYAL 117

Query: 297 IAA 299
           +  
Sbjct: 118 MGY 120

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGG 236
             + +I   A+ +  ++  A  +G    +   M            EVWR++++ LVH+  
Sbjct: 9   GKITLILT-ALCVLIYI--AQQLGFEDDIMYLMHYPAYEEQDS--EVWRYISHTLVHLSN 63

Query: 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYAL 296
            H++ NL    + G  +E      ++L++Y+V         +      F  G SG VYA+
Sbjct: 64  LHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAF-FGLSGVVYAV 122

Query: 297 IAAHVATIIMVRSLL 311
           +        +   L 
Sbjct: 123 LGYVFIRDKLNHHLF 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.89
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.88
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	96.66
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	95.65

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.89  E-value=3.5e-23  Score=184.45  Aligned_cols=129  Identities=19%  Similarity=0.367  Sum_probs=104.2

Q ss_pred             cccCCCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCC--CcCchhhhhhhhhccccHHHHHHHHHHHHHH
Q psy17558        172 YTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF--HRAEVWRFMTYMLVHVGGFHLVVNLLVQILL  249 (317)
Q Consensus       172 ~~~~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~--~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~  249 (317)
                      .+.+.+|++.. ++++|+++|+++...+..      .....+.+.|.  .++|+||++|++|+|.|+.|+++||+.++.+
T Consensus         4 ~~~~~~pvt~~-li~~~v~vfll~~~~~~~------~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~   76 (196)
T 2nr9_A            4 FLAQQGKITLI-LTALCVLIYIAQQLGFED------DIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIF   76 (196)
T ss_dssp             CCTTSCHHHHH-HHHHHHHHHHHHHTTCHH------HHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHH
T ss_pred             cccccccHHHH-HHHHHHHHHHHHHHcCcH------HHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            44556676555 457899999987654211      11223345554  5789999999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhc
Q psy17558        250 GIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVR  308 (317)
Q Consensus       250 G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~  308 (317)
                      |..+|+.+|++|++.+|++++++|++++.++++.. ++||||++||++|+++.....+.
T Consensus        77 G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~~  134 (196)
T 2nr9_A           77 GGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDKLNH  134 (196)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHSST
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999887764 89999999999998876544443

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.88  E-value=1.9e-22  Score=177.46  Aligned_cols=125  Identities=22%  Similarity=0.234  Sum_probs=101.6

Q ss_pred             CCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCC--CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHH
Q psy17558        176 PPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF--HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPL  253 (317)
Q Consensus       176 ~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~--~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~l  253 (317)
                      .||++.. ++++|+++|+.+...+..      .....+.++|.  .++|+||++|++|+|.|+.|+++||+.++.+|..+
T Consensus         3 ~~pvt~~-li~~~v~vf~~~~~~~~~------~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~   75 (181)
T 2xov_A            3 AGPVTWV-MMIACVVVFIAMQILGDQ------EVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAV   75 (181)
T ss_dssp             CCHHHHH-HHHHHHHHHHHHHHHCHH------HHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHH-HHHHHHHHHHHHHHhCcH------HHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            4565555 558899999987764321      11223344554  57899999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhc
Q psy17558        254 EMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVR  308 (317)
Q Consensus       254 E~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~  308 (317)
                      |+.+|+.|++.+|++++++|++++.++++.. ++||||+++|++|+++.....+.
T Consensus        76 E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~p  129 (181)
T 2xov_A           76 EKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERDP  129 (181)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhCc
Confidence            9999999999999999999999999887654 89999999999998876544443

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=96.66  E-value=0.00013  Score=64.20  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             CCchhHHHHHHHHHHhhheeeEeeCCcccccCcccccceecCc--hhhHHHHHHHHHHHhhhhccccccchhhhh----h
Q psy17558         58 PPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF--HRAEVWRFMTYMLVHVGIWENAAQDEADVV----V  131 (317)
Q Consensus        58 ppp~f~i~is~~ei~~f~y~~~~~~~~~~~~~~~~s~l~y~p~--~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l  131 (317)
                      .||+-..+| ++.+++|+.....  ..    ..+...+.+.|+  .+.|.||++|++|+|.|+.|+..|.+....    +
T Consensus         8 ~~pvt~~li-~~~v~vfll~~~~--~~----~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~l   80 (196)
T 2nr9_A            8 QGKITLILT-ALCVLIYIAQQLG--FE----DDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMI   80 (196)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHTT--CH----HHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHH-HHHHHHHHHHHHc--Cc----HHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            366644433 3456666643211  00    012244567776  678999999999999999999999987544    4


Q ss_pred             hcc-ccccccccccc
Q psy17558        132 IRK-PKWNRLNSYVR  145 (317)
Q Consensus       132 ~~~-~kwrr~~~Yv~  145 (317)
                      |.. +++|-...|+.
T Consensus        81 E~~~G~~~~l~~yl~   95 (196)
T 2nr9_A           81 ERTFGSVKLLMLYVV   95 (196)
T ss_dssp             HHHHCHHHHHHHHHH
T ss_pred             HHHHChHHHHHHHHH
Confidence            433 56665555543

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=95.65  E-value=0.00068  Score=58.78  Aligned_cols=36  Identities=19%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             ccceecCc--hhhHHHHHHHHHHHhhhhccccccchhh
Q psy17558         93 KTLIYNPF--HRAEVWRFMTYMLVHVGIWENAAQDEAD  128 (317)
Q Consensus        93 s~l~y~p~--~r~e~WRf~tym~~h~g~~Hl~~~~~~~  128 (317)
                      ..+.++|+  ++.|.||++|++|+|.|+.|+..|....
T Consensus        31 ~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l   68 (181)
T 2xov_A           31 LWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWW   68 (181)
T ss_dssp             HHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHH
T ss_pred             HhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHH
Confidence            34556675  6789999999999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	1e-10
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	1e-08

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGG 236
            PV  + +    +  F+   ++      L         ++P  + E WR+ T+ L+H   
Sbjct: 4   GPVTWVMM-IACVVVFIAMQILGDQEVMLWLA----WPFDPTLKFEFWRYFTHALMHFSL 58

Query: 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYAL 296
            H++ NLL    LG  +E      ++++I L+  L             F  G SG VYAL
Sbjct: 59  MHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-GGLSGVVYAL 117

Query: 297 IAAHVATIIMVRSLL 311
           +              
Sbjct: 118 MGYVWLRGERDPQSG 132

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGG 236
             + +I   A+ +  ++   +   D                   +EVWR++++ LVH+  
Sbjct: 6   GKITLILT-ALCVLIYIAQQLGFEDDIMY----LMHYPAYEEQDSEVWRYISHTLVHLSN 60

Query: 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYAL 296
            H++ NL    + G  +E      ++L++Y+V         +      F  G SG VYA+
Sbjct: 61  LHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFF-GLSGVVYAV 119

Query: 297 IAAHVATIIMVRSLL 311
           +        +   L 
Sbjct: 120 LGYVFIRDKLNHHLF 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.84
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.84
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	96.67
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	96.01

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.84  E-value=3.1e-21  Score=168.20  Aligned_cols=132  Identities=20%  Similarity=0.331  Sum_probs=105.3

Q ss_pred             CCCCeehhHHHHHHhhhhHHhhhhcccccccccccccccccc--CCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHHH
Q psy17558        175 IPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYN--PFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIP  252 (317)
Q Consensus       175 ~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~--p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~  252 (317)
                      +.+|++.. ++++|+++|+.+.......      ......+.  ...++|+||++|++|+|+|+.|+++||+.++.+|..
T Consensus         4 ~~~pvt~~-i~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~   76 (189)
T d2nr9a1           4 QQGKITLI-LTALCVLIYIAQQLGFEDD------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGM   76 (189)
T ss_dssp             TSCHHHHH-HHHHHHHHHHHHHTTCHHH------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHH-HHHHHHHHHHHHHHhccHH------HHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34565554 5578888988876532211      11111121  225789999999999999999999999999999999


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhccccCCC
Q psy17558        253 LEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQ  314 (317)
Q Consensus       253 lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~~~m~~~  314 (317)
                      +|+.+|+.+++.+|+++++.|++.+.+..+. +.+||||+++|++++.......++..+..+
T Consensus        77 ~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~-~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~  137 (189)
T d2nr9a1          77 IERTFGSVKLLMLYVVASAITGYVQNYVSGP-AFFGLSGVVYAVLGYVFIRDKLNHHLFDLP  137 (189)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS-CCCCSHHHHHHHHHHHHHHHHSSTTSCCCC
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CcccchHHHHHHHHHHHHHHHHhhhHhccH
Confidence            9999999999999999999999998887664 579999999999999999888888766543

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.2e-21  Score=165.68  Aligned_cols=131  Identities=21%  Similarity=0.244  Sum_probs=104.8

Q ss_pred             CCCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHH
Q psy17558        175 IPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLE  254 (317)
Q Consensus       175 ~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE  254 (317)
                      |.+|+|.. ++++|+++|+.....+.+..    .....+...+..++|+||++||+|+|.|+.|+++||+.++.+|..+|
T Consensus         2 r~~pvT~~-li~i~~~vf~~~~~~~~~~~----~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE   76 (180)
T d3b45a1           2 RAGPVTWV-MMIACVVVFIAMQILGDQEV----MLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVE   76 (180)
T ss_dssp             CCCHHHHH-HHHHHHHHHHHHHHHCHHHH----HHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHH-HHHHHHHHHHHHHHhCcHHH----HHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            45677665 44788888887654332210    01112233344688999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhcccc
Q psy17558        255 MVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLL  311 (317)
Q Consensus       255 ~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~~~m  311 (317)
                      +.+|++|++.+|+++++.|++.+.++.++ ..+|+||+++|++++.......++...
T Consensus        77 ~~~G~~~~~~~~~~~~~~g~l~~~~~~~~-~~~G~sg~i~~l~~~~~~~~~~~~~~~  132 (180)
T d3b45a1          77 KRLGSGKLIVITLISALLSGYVQQKFSGP-WFGGLSGVVYALMGYVWLRGERDPQSG  132 (180)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHCS-CCCCSHHHHHHHHHHHHHHHHHCGGGS
T ss_pred             HhccchhheeeeeHHHHHHHHHHHHHhcc-ccccccchHHHHHHHHHHHhhhcchhH
Confidence            99999999999999999999999988875 578999999999999988877666543

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=1.5e-05  Score=66.80  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             ceecCchhhHHHHHHHHHHHhhhhccccccchhhhh
Q psy17558         95 LIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVV  130 (317)
Q Consensus        95 l~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~  130 (317)
                      +.+.+.+..|.||++||+|+|.|+.|+..|...-..
T Consensus        35 ~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~   70 (180)
T d3b45a1          35 WPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY   70 (180)
T ss_dssp             SCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHH
T ss_pred             CCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667778999999999999999999999987533

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=96.01  E-value=0.00011  Score=61.89  Aligned_cols=48  Identities=23%  Similarity=0.246  Sum_probs=35.4

Q ss_pred             cCchhhHHHHHHHHHHHhhhhccccccchhhhh----hhcc-ccccccccccc
Q psy17558         98 NPFHRAEVWRFMTYMLVHVGIWENAAQDEADVV----VIRK-PKWNRLNSYVR  145 (317)
Q Consensus        98 ~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l~~~-~kwrr~~~Yv~  145 (317)
                      .+.+..|.||++||+|+|+|..|+..|......    +|.. +++|-...|+.
T Consensus        40 ~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~   92 (189)
T d2nr9a1          40 YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVV   92 (189)
T ss_dssp             SGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            344667899999999999999999999886544    3333 55665555543