Psyllid ID: psy17592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MRLYSSELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHcccccEEEcccHHHHHHHHHHccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHcccEEEccccHHHHHHHHHHcEEEEcccccccccccc
Coil and Loop (DISEMBL)
mrlysselpvrnktdkfpitWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLgkvaiggkfelvdcnnkpvksedflgKWALIYFgfthcpdicpDELEKMAAVVNKidgqpnvpnitpifisvdperdtpelVGKYVKefspkfigltGTVEQVAAACKAYRVYfsagpkdkdsdyi
Flexible Loop (DISEMBL)
mrlysselpvrnktdkfpitwkSVAVTAVTGGGILFYMWNLKKAKQNALEKERRrnlgkvaiggkfelvdcnnkpvKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKidgqpnvpNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRvyfsagpkdkdsdyi
Low Complexity Region (SEG)
MRLYSSELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI
Disordered region (IsUnstruct)
**************DKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALE**RRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS***********
Disordered Region (DISOPRED)
*********************KSVAVTAVTGGGILFYMWN*********************IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF***********I
Disordered Region (DISEMBL)
MRLYSSELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP********
Disordered Region (DISPRO)
***************KFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLYSSELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q5SUC9	284	Protein SCO1 homolog, mit	yes	N/A	0.907	0.584	0.572	1e-51
A1A4J8	305	Protein SCO1 homolog, mit	yes	N/A	0.907	0.544	0.578	3e-50
O75880	301	Protein SCO1 homolog, mit	yes	N/A	0.907	0.551	0.560	1e-48
Q5RH02	279	Protein SCO2 homolog, mit	yes	N/A	0.874	0.573	0.490	2e-44
Q8VCL2	255	Protein SCO2 homolog, mit	no	N/A	0.874	0.627	0.484	3e-44
A6H784	266	Protein SCO2 homolog, mit	no	N/A	0.994	0.684	0.435	4e-44
O43819	266	Protein SCO2 homolog, mit	no	N/A	0.792	0.545	0.489	1e-41
Q8VYP0	334	Protein SCO1 homolog 1, m	yes	N/A	0.896	0.491	0.450	3e-39
P38072	301	Protein SCO2, mitochondri	yes	N/A	0.939	0.571	0.401	2e-36
P23833	295	Protein SCO1, mitochondri	no	N/A	0.939	0.583	0.388	3e-32

>sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/166 (57%), Positives = 123/166 (74%)

Query: 18  PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
           P++WKS+A+T   GG +L  M   KK K   LEK+R R++GK  +GG F L   N +P  
Sbjct: 75  PVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEKQRHRSIGKPLLGGPFSLTTHNGEPKT 134

Query: 78  SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
            +D+LG+W LIYFGFTHCPDICP+ELEKM  VV +ID  P++PN+TP+FI++DPERDT E
Sbjct: 135 DKDYLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFITIDPERDTKE 194

Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            +  YVKEFSPK +GLTGT E++    +AYRVY+S GPKD+D DYI
Sbjct: 195 AIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDEDEDYI 240

Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX.
Mus musculus (taxid: 10090)

>sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/166 (57%), Positives = 122/166 (73%)

Query: 18  PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
           P++WKS+AVT   GG +L  M   KK K   LEKER R++GK  +GG F L     +P  
Sbjct: 96  PVSWKSLAVTFAIGGALLAGMKYFKKEKTEKLEKERHRSIGKPLLGGPFSLTTHTGEPKT 155

Query: 78  SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
            +D+LG+W LIYFGFTHCPDICP+ELEKM  VV++ID  P +PN+TP+FI++DPERDT E
Sbjct: 156 DKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTLPNLTPLFITIDPERDTKE 215

Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            +  YVKEFSPK IGLTGT E++    +A+RVY+S GPKD+D DYI
Sbjct: 216 AIANYVKEFSPKLIGLTGTKEEIDQVARAFRVYYSPGPKDEDEDYI 261

Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX.

Bos taurus (taxid: 9913)

>sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1

 Score =  192 bits (487), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 123/166 (74%)

Query: 18  PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
           P++WKS+A+T   GG +L  M ++KK K   LEKER+R++GK  +GG F L     +   
Sbjct: 92  PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151

Query: 78  SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
            +D+LG+W LIYFGFTHCPD+CP+ELEKM  VV++ID    +P++TP+FIS+DPERDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211

Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD+D DYI
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 257

Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX.

Homo sapiens (taxid: 9606)

>sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 24  VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIG-GKFELVDCNNKPVKSEDFL 82
           + VT + GGGI+   W + + K+  ++ +R   L KVA+G G F L+D   +     DFL
Sbjct: 73  LVVTLLFGGGIIGTWWYVHQEKEKRIQMQRLEQLRKVALGQGDFHLLDHTGQRRTKRDFL 132

Query: 83  GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142
           G W L+YFGFTHCPDICPDELEK+ +VV+ +D  P++P++ P+FI+VDPERD    + +Y
Sbjct: 133 GHWVLLYFGFTHCPDICPDELEKLTSVVHILDKDPSLPSVQPLFITVDPERDDVSAMARY 192

Query: 143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           VK+F P+ +GLTG+ E+V  A + +RVY S GPKD+D DYI
Sbjct: 193 VKDFHPRLVGLTGSAEEVKQAGRDFRVYASNGPKDEDGDYI 233

Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2).

Danio rerio (taxid: 7955)

>sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=2 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 24  VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIG-GKFELVDCNNKPVKSEDFL 82
           + +TA+ G G+ +     +  K+   +++R   L + A+G G F L+D   +P    DF 
Sbjct: 50  LLITALFGAGLGWAWLAARAEKEQWRQQQRTEALRQAAVGQGDFSLLDHKGQPRCKADFR 109

Query: 83  GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142
           G+W L+YFGFTHCPDICPDELEK+  VV K++ +P++P + P+FI+VDPERD    + +Y
Sbjct: 110 GQWVLMYFGFTHCPDICPDELEKLVQVVRKLEAEPDLPLVQPVFITVDPERDDVAAMARY 169

Query: 143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           V+EF P+ +GLTG+ EQVA A + YRVY+SAGPKD+D DYI
Sbjct: 170 VQEFHPRLLGLTGSTEQVAHASRNYRVYYSAGPKDEDQDYI 210

Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2).

Mus musculus (taxid: 10090)

>sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 120/186 (64%), Gaps = 4/186 (2%)

Query: 2   RLYSSELPV---RNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLG 58
           +L+S+  P    R    + P     + VTA+ G G+      L+  K+   +++R   L 
Sbjct: 36  QLFSTPGPADTGRQGQPQGPGLRTRLLVTALVGAGLGGAWLALRAEKERGRQQQRTEALR 95

Query: 59  KVAIG-GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
           + A+G G F L+D   +     DF G+W L+YFGFTHCPDICPDELEK+  VV +++ +P
Sbjct: 96  QAAVGQGDFSLLDHRGRVRCKADFRGQWVLLYFGFTHCPDICPDELEKLVQVVRQLEAEP 155

Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
            +P + P+FI+VDPERDT   + +YV++F P+ +GLTG+ EQ+A   ++YRVY+SAGPKD
Sbjct: 156 GLPPVQPLFITVDPERDTVAAMARYVQDFHPRLLGLTGSAEQIAQVSRSYRVYYSAGPKD 215

Query: 178 KDSDYI 183
           +D DYI
Sbjct: 216 EDQDYI 221

Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2).

Bos taurus (taxid: 9913)

>sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 106/147 (72%), Gaps = 2/147 (1%)

Query: 39  WNLKKAKQNALEKERRRN-LGKVAIG-GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCP 96
           W   +A++  L++++R   L + A+G G F L+D   +     DF G+W L+YFGFTHCP
Sbjct: 75  WLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCP 134

Query: 97  DICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGT 156
           DICPDELEK+  VV +++ +P +P + P+FI+VDPERD  E + +YV++F P+ +GLTG+
Sbjct: 135 DICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGS 194

Query: 157 VEQVAAACKAYRVYFSAGPKDKDSDYI 183
            +QVA A  +YRVY++AGPKD+D DYI
Sbjct: 195 TKQVAQASHSYRVYYNAGPKDEDQDYI 221

Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2).

Homo sapiens (taxid: 9606)

>sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 114/171 (66%), Gaps = 7/171 (4%)

Query: 18  PITWKSVAVTAVTGGGILFYMWNLKKAK-----QNALEKERRRNLGKVAIGGKFELVDCN 72
           P++W S  +   TG G+++Y    KK       +N++  +   + GK AIGG F L+  +
Sbjct: 124 PVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDD 183

Query: 73  NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132
            K V  ++ +GKW ++YFGFTHCPDICPDEL K+AA ++KI     V ++ P+FISVDPE
Sbjct: 184 GKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGV-DVVPVFISVDPE 242

Query: 133 RDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           RDT + V +YVKEF PK IGLTG+ E++ +  ++YRVY+    +++DSDY+
Sbjct: 243 RDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYY-MKTEEEDSDYL 292

Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX. Plays an essential role in embryo development.

Arabidopsis thaliana (taxid: 3702)

>sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 5/177 (2%)

Query: 9   PVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFEL 68
           P+R +  +F   WK+     +  GG   Y+   ++  +   E +  R  G VA+GG F L
Sbjct: 69  PIRTRFFQFS-RWKATIALLLLSGGTYAYLSRKRRLLETEKEADANRAYGSVALGGPFNL 127

Query: 69  VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS 128
            D N KP   E+  GK++++YFGF+HCPDICP+EL+++   ++++D + ++  I P+FIS
Sbjct: 128 TDFNGKPFTEENLKGKFSILYFGFSHCPDICPEELDRLTYWISELDDKDHI-KIQPLFIS 186

Query: 129 VDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD--KDSDYI 183
            DP RDTP+++ +Y+ +F P  IGLTGT +QV + CK Y+VYFS  P+D   + DY+
Sbjct: 187 CDPARDTPDVLKEYLSDFHPAIIGLTGTYDQVKSVCKKYKVYFST-PRDVKPNQDYL 242

Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 3/175 (1%)

Query: 10  VRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELV 69
           VR  + +F  T K++A+    GG + ++    K+  +   E E  R  GK ++GG F L 
Sbjct: 64  VREGSIEFS-TGKAIALFLAVGGALSYFFNREKRRLETQKEAEANRGYGKPSLGGPFHLE 122

Query: 70  DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV 129
           D        ++ LGK+++IYFGF++CPDICPDEL+K+   +N +  +  +  + P+FI+ 
Sbjct: 123 DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGI-TLQPLFITC 181

Query: 130 DPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDK-DSDYI 183
           DP RD+P ++ +Y+ +F P  +GLTGT ++V  ACK YRVYFS  P  K   DY+
Sbjct: 182 DPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYL 236

Required for the accumulation of subunits 1 and 2 of cytochrome c oxidase complex. Thought to play a role in either mitochondrial copper transport or insertion of copper into the active site of COX.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
91090063	271	PREDICTED: similar to GA21389-PA [Tribol	0.907	0.612	0.698	2e-66
332374668	278	unknown [Dendroctonus ponderosae]	0.994	0.654	0.638	1e-63
328784752	285	PREDICTED: protein SCO1 homolog, mitocho	0.983	0.631	0.646	2e-63
380020399	292	PREDICTED: protein SCO1 homolog, mitocho	0.896	0.561	0.678	9e-63
312382271	390	hypothetical protein AND_05116 [Anophele	0.918	0.430	0.672	2e-62
118785805	276	AGAP008774-PA [Anopheles gambiae str. PE	0.918	0.608	0.666	2e-62
195437420	256	GK24460 [Drosophila willistoni] gi|19416	0.961	0.687	0.636	4e-62
270014369	214	hypothetical protein TcasGA2_TC030680, p	0.863	0.738	0.680	4e-62
340726827	289	PREDICTED: protein SCO1 homolog, mitocho	0.896	0.567	0.684	2e-61
195035207	262	GH10243 [Drosophila grimshawi] gi|193905	0.918	0.641	0.660	6e-61

>gi|91090063|ref|XP_969355.1| PREDICTED: similar to GA21389-PA [Tribolium castaneum]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/166 (69%), Positives = 139/166 (83%)

Query: 18  PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
           PI+W+++A+T V GGG+L +M+ LKK K++AL +ER+R LGK  IGG FELVD   K  K
Sbjct: 57  PISWRNLAITGVLGGGLLAFMYYLKKEKEDALMRERKRMLGKAKIGGYFELVDSEGKTRK 116

Query: 78  SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
           S+DFLG+W LIYFGFTHCPDICPDELEKMAAV+N +D   +VP + PIFISVDP+RD+P 
Sbjct: 117 SDDFLGQWMLIYFGFTHCPDICPDELEKMAAVINDLDSTKDVPRVQPIFISVDPQRDSPA 176

Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           +VGKY  EFSP+ +GLTGTVEQVA ACKAYRVYFSAGPKDKDSDYI
Sbjct: 177 VVGKYCAEFSPRLLGLTGTVEQVARACKAYRVYFSAGPKDKDSDYI 222

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374668|gb|AEE62475.1| unknown [Dendroctonus ponderosae]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 138/188 (73%), Gaps = 6/188 (3%)

Query: 2   RLYSSELPVRNKTDKF-----PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRN 56
           R YS +LP R    K      PITWK++A+T+  GG +L +MW LKK K+ A EKER R 
Sbjct: 42  RQYSEQLPKRRNESKMGKGVGPITWKNLAITSSLGGILLVFMWYLKKEKETAQEKERARM 101

Query: 57  LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
           LGK AIGG FELVD   K   S+DF+G+W L+YFGFTHCPDICPDELEKMA  V+ ++  
Sbjct: 102 LGKAAIGGAFELVDSTGKLRNSQDFIGQWVLLYFGFTHCPDICPDELEKMAEAVDLLEND 161

Query: 117 PNVP-NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175
              P  I PIFISVDP RDTPELVGKY KEFSP+ +GLTG  EQV+ ACKAYRVYFSAGP
Sbjct: 162 KERPIKIQPIFISVDPNRDTPELVGKYCKEFSPRLLGLTGNEEQVSKACKAYRVYFSAGP 221

Query: 176 KDKDSDYI 183
           KDKD DYI
Sbjct: 222 KDKDKDYI 229

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784752|ref|XP_001122061.2| PREDICTED: protein SCO1 homolog, mitochondrial-like [Apis mellifera]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 141/184 (76%), Gaps = 4/184 (2%)

Query: 3   LYSSELPVRNKTD---KFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGK 59
           LY+S     NK +   K  ITWKSV VT V G  +L YM+ L++ K   +E+ERRR LGK
Sbjct: 43  LYNSNEISNNKKESVRKSFITWKSVVVTTVIGTSLLMYMYYLQEIKDKQIERERRRQLGK 102

Query: 60  VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNV 119
            AIGGKFEL+D   K  KS+DFLG+W LIYFGFTHCPDICPDELEKM  +VNK++ Q N+
Sbjct: 103 AAIGGKFELIDSQGKIWKSDDFLGQWVLIYFGFTHCPDICPDELEKMTEIVNKLEKQHNI 162

Query: 120 PNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKD 179
             + PIFISVDPERDTPE+VGKY+KEFS K +GLTGT EQ+A  CKAYRVY+S GPKD+D
Sbjct: 163 -KVQPIFISVDPERDTPEVVGKYIKEFSDKILGLTGTKEQIAKVCKAYRVYYSNGPKDQD 221

Query: 180 SDYI 183
           SDYI
Sbjct: 222 SDYI 225

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020399|ref|XP_003694074.1| PREDICTED: protein SCO1 homolog, mitochondrial-like [Apis florea]

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 132/165 (80%), Gaps = 1/165 (0%)

Query: 19  ITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKS 78
           ITWKSV VT + G  +L YM+ L++ K   +E+ERRR LGK AIGGKFEL+D   K  KS
Sbjct: 69  ITWKSVIVTTIIGTSLLIYMYYLQEIKDKQIERERRRQLGKAAIGGKFELIDSQGKIWKS 128

Query: 79  EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138
           +DFLG+W LIYFGFTHCPDICPDELEKM  +VNK++ Q N   + PIFISVDPERDTPE+
Sbjct: 129 DDFLGQWVLIYFGFTHCPDICPDELEKMTEIVNKLEKQHNT-KVQPIFISVDPERDTPEV 187

Query: 139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           VGKY+KEFS K +GLTGT EQ+A  CKAYRVY+S GPKD+DSDYI
Sbjct: 188 VGKYIKEFSDKILGLTGTKEQIAKVCKAYRVYYSNGPKDQDSDYI 232

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382271|gb|EFR27787.1| hypothetical protein AND_05116 [Anopheles darlingi]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 134/168 (79%)

Query: 16  KFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKP 75
           K PITWKS A  A  G G+L +MW +K  K+ AL +ER+R LGK AIGGK+ELVD N  P
Sbjct: 58  KGPITWKSFAFIATAGIGVLGFMWYVKDEKEQALLRERKRQLGKAAIGGKWELVDSNGNP 117

Query: 76  VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135
            KS DFLGKW LIYFGFTHCPDICPDELEKMAAVV+ ++       + PIFI+VDP+RDT
Sbjct: 118 RKSSDFLGKWLLIYFGFTHCPDICPDELEKMAAVVDNLEKDETAEPVQPIFITVDPQRDT 177

Query: 136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            E+VGKYVKEFSP+ +GLTGTV+QVA  C+A+RVYFSAGPKD+D+DYI
Sbjct: 178 KEIVGKYVKEFSPRLLGLTGTVDQVAQVCRAFRVYFSAGPKDEDNDYI 225

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785805|ref|XP_314900.3| AGAP008774-PA [Anopheles gambiae str. PEST] gi|116127910|gb|EAA10098.4| AGAP008774-PA [Anopheles gambiae str. PEST]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 136/168 (80%)

Query: 16  KFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKP 75
           K PITWKS A  A  G G+L +MW +K  K+ AL +ER+R LGK AIGGK++LVD +  P
Sbjct: 60  KGPITWKSFAFIATAGIGVLGFMWYVKDEKEQALLRERKRQLGKAAIGGKWDLVDSDGNP 119

Query: 76  VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135
            KS DFLGKW LIYFGFTHCPDICPDELEKMAAVV+ ++ + +   + PIFI+VDP+RD+
Sbjct: 120 RKSADFLGKWLLIYFGFTHCPDICPDELEKMAAVVDNLEKEKDADPVQPIFITVDPQRDS 179

Query: 136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            E+VGKYVKEFSPK +GLTGTVEQVA  C+A+RVYFSAGPKD+D+DYI
Sbjct: 180 KEIVGKYVKEFSPKLLGLTGTVEQVAQVCRAFRVYFSAGPKDEDNDYI 227

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437420|ref|XP_002066638.1| GK24460 [Drosophila willistoni] gi|194162723|gb|EDW77624.1| GK24460 [Drosophila willistoni]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 141/179 (78%), Gaps = 3/179 (1%)

Query: 5   SSELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGG 64
           S+  PV+ K    PI+W+S+AV  V G G L +M  +K  K  AL KER+R LGK AIGG
Sbjct: 31  SASDPVKGKG---PISWRSLAVIGVLGAGGLGFMLYVKAEKDEALLKERKRQLGKAAIGG 87

Query: 65  KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP 124
           ++ELVD   +  KSEDFLGKW LIYFGFTHCPDICPDELEKMAAVV++++  P  P++ P
Sbjct: 88  RWELVDSQGQVRKSEDFLGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPDVQP 147

Query: 125 IFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           IFI+VDPERD+ E+VGKYVKEFSPK +GLTGTV+Q+   CKA+RVYFSAGP+D+D+DYI
Sbjct: 148 IFITVDPERDSKEIVGKYVKEFSPKLLGLTGTVDQIRNVCKAFRVYFSAGPRDEDNDYI 206

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014369|gb|EFA10817.1| hypothetical protein TcasGA2_TC030680, partial [Tribolium castaneum]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 135/166 (81%), Gaps = 8/166 (4%)

Query: 18  PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
           PI+W+++A+T V GGG+L +M+ LKK K++AL +ER+R LGK  IGG FELVD   K  K
Sbjct: 8   PISWRNLAITGVLGGGLLAFMYYLKKEKEDALMRERKRMLGKAKIGGYFELVDSEGKTRK 67

Query: 78  SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
           S+DFLG+W LIYFGFTHCPDICPDELEKMAAV+N +        + PIFISVDP+RD+P 
Sbjct: 68  SDDFLGQWMLIYFGFTHCPDICPDELEKMAAVINDL--------VQPIFISVDPQRDSPA 119

Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           +VGKY  EFSP+ +GLTGTVEQVA ACKAYRVYFSAGPKDKDSDYI
Sbjct: 120 VVGKYCAEFSPRLLGLTGTVEQVARACKAYRVYFSAGPKDKDSDYI 165

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726827|ref|XP_003401754.1| PREDICTED: protein SCO1 homolog, mitochondrial-like [Bombus terrestris]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/165 (68%), Positives = 134/165 (81%), Gaps = 1/165 (0%)

Query: 19  ITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKS 78
           ITWKSVAVT+V    +L YM+ L+++K   +E+ERRR LGK AIGGKFELVD   K  KS
Sbjct: 66  ITWKSVAVTSVGCAVLLMYMYYLQESKDKEIERERRRALGKAAIGGKFELVDSKGKVWKS 125

Query: 79  EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138
           +DFLG+W LIYFGFTHCPDICPDELEK+  +V+K++ Q N   + PIFISVDP+RDTPE+
Sbjct: 126 DDFLGQWVLIYFGFTHCPDICPDELEKLTEIVDKLETQHNT-KVQPIFISVDPDRDTPEV 184

Query: 139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           VGKYVKEFS K +GLTGT EQVA  CKAYRVY+S GPKD+DSDYI
Sbjct: 185 VGKYVKEFSDKILGLTGTKEQVAKVCKAYRVYYSNGPKDQDSDYI 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035207|ref|XP_001989069.1| GH10243 [Drosophila grimshawi] gi|193905069|gb|EDW03936.1| GH10243 [Drosophila grimshawi]

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 134/168 (79%)

Query: 16  KFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKP 75
           K PI+WKS+AV  V G G L +M  +K  K  AL KER+R LGK AIGG++ELVD   + 
Sbjct: 45  KGPISWKSLAVIGVLGAGGLGFMLYVKSEKDEALMKERKRQLGKAAIGGRWELVDDKGQV 104

Query: 76  VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135
            KSEDF+GKW LIYFGFTHCPDICPDELEKMAAVV++++  P  P + PIFI+VDPERD+
Sbjct: 105 RKSEDFVGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPEVQPIFITVDPERDS 164

Query: 136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            E+VGKYVKEFSPK +GLTGTV+Q+   CKA+RVYFSAGP+D D+DYI
Sbjct: 165 KEVVGKYVKEFSPKLLGLTGTVDQIRNVCKAFRVYFSAGPRDSDNDYI 212

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0262467	251	Scox "Synthesis of cytochrome	0.989	0.721	0.606	3.6e-57
RGD|1559538	284	Sco1 "SCO1 cytochrome c oxidas	0.907	0.584	0.578	1.7e-52
UNIPROTKB|F1SS60	305	SCO1 "Uncharacterized protein"	0.907	0.544	0.578	3.5e-52
MGI|MGI:106362	284	Sco1 "SCO cytochrome oxidase d	0.907	0.584	0.572	3.5e-52
UNIPROTKB|A1A4J8	305	SCO1 "Protein SCO1 homolog, mi	0.907	0.544	0.578	4.4e-52
UNIPROTKB|J9NS66	304	SCO1 "Uncharacterized protein"	0.907	0.546	0.572	9.2e-52
UNIPROTKB|O75880	301	SCO1 "Protein SCO1 homolog, mi	0.907	0.551	0.560	1.3e-50
ZFIN|ZDB-GENE-041210-173	289	sco2 "SCO cytochrome oxidase d	0.874	0.553	0.490	1.7e-41
MGI|MGI:3818630	255	Sco2 "SCO cytochrome oxidase d	0.857	0.615	0.506	4.6e-41
UNIPROTKB|F1NGC6	151	SCO1 "Uncharacterized protein"	0.666	0.807	0.598	1.2e-40

FB|FBgn0262467 Scox "Synthesis of cytochrome c oxidase" [Drosophila melanogaster (taxid:7227)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 111/183 (60%), Positives = 137/183 (74%)

Query:     1 MRLYSSELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKV 60
             +R Y++  P  +   K PI+W+S+AV    G G + +M  +K  K  A  KER+R LGK 
Sbjct:    21 IRHYAA--PADSTKGKGPISWRSLAVIGALGAGGVGFMLYVKSEKDEARMKERQRQLGKA 78

Query:    61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVP 120
             AIGG +ELVD      KSEDFLGKW LIYFGFTHCPDICPDELEKMAAVV++++  P  P
Sbjct:    79 AIGGSWELVDSQGAVRKSEDFLGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTP 138

Query:   121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDS 180
              + PIFI+VDPERD+ E+V KYVKEFSPK +GLTGTVEQ+   CKA+RVYFSAGP+D+D+
Sbjct:   139 AVQPIFITVDPERDSKEVVAKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPRDEDN 198

Query:   181 DYI 183
             DYI
Sbjct:   199 DYI 201

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0016531 "copper chaperone activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0002168 "instar larval development" evidence=IMP

GO:0007308 "oocyte construction" evidence=IMP

GO:0017004 "cytochrome complex assembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0004129 "cytochrome-c oxidase activity" evidence=IMP

GO:0060361 "flight" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

RGD|1559538 Sco1 "SCO1 cytochrome c oxidase assembly protein" [Rattus norvegicus (taxid:10116)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 96/166 (57%), Positives = 123/166 (74%)

Query:    18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
             P++WKS+A+T   GG +L  M   KK K   LEK+R R++GK  +GG F L   N +P  
Sbjct:    75 PVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEKQRHRSIGKPLLGGPFSLTTHNGEPKT 134

Query:    78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
              +DFLG+W LIYFGFTHCPDICP+ELEKM  VV +ID  P++PN+TP+FI++DPERDT E
Sbjct:   135 DKDFLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFITIDPERDTKE 194

Query:   138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
              +  YVKEFSPK +GLTGT E++    +AYRVY+S GPKD+D DYI
Sbjct:   195 AIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDEDEDYI 240

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

UNIPROTKB|F1SS60 SCO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 96/166 (57%), Positives = 123/166 (74%)

Query:    18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
             P++WKS+A+T   GG +L  M  LKK K   LEKER+R++GK  +GG F L     +P  
Sbjct:    96 PVSWKSLAITFAIGGALLAGMKYLKKEKTEKLEKERQRSIGKPLLGGPFSLTTHTGEPKT 155

Query:    78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
              +D+LG+W LIYFGFTHCPDICP+ELEKM  VV++ID  P +PN+TP+FI++DPERDT E
Sbjct:   156 DKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTLPNLTPLFITIDPERDTEE 215

Query:   138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
              +  YVKEFSPK IGLTGT E +    +A+RVY+S GPKD+D DYI
Sbjct:   216 AIANYVKEFSPKLIGLTGTKEAIDQVARAFRVYYSPGPKDEDEDYI 261

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

MGI|MGI:106362 Sco1 "SCO cytochrome oxidase deficient homolog 1 (yeast)" [Mus musculus (taxid:10090)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 95/166 (57%), Positives = 123/166 (74%)

Query:    18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
             P++WKS+A+T   GG +L  M   KK K   LEK+R R++GK  +GG F L   N +P  
Sbjct:    75 PVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEKQRHRSIGKPLLGGPFSLTTHNGEPKT 134

Query:    78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
              +D+LG+W LIYFGFTHCPDICP+ELEKM  VV +ID  P++PN+TP+FI++DPERDT E
Sbjct:   135 DKDYLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFITIDPERDTKE 194

Query:   138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
              +  YVKEFSPK +GLTGT E++    +AYRVY+S GPKD+D DYI
Sbjct:   195 AIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDEDEDYI 240

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A1A4J8 SCO1 "Protein SCO1 homolog, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 96/166 (57%), Positives = 122/166 (73%)

Query:    18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
             P++WKS+AVT   GG +L  M   KK K   LEKER R++GK  +GG F L     +P  
Sbjct:    96 PVSWKSLAVTFAIGGALLAGMKYFKKEKTEKLEKERHRSIGKPLLGGPFSLTTHTGEPKT 155

Query:    78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
              +D+LG+W LIYFGFTHCPDICP+ELEKM  VV++ID  P +PN+TP+FI++DPERDT E
Sbjct:   156 DKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTLPNLTPLFITIDPERDTKE 215

Query:   138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
              +  YVKEFSPK IGLTGT E++    +A+RVY+S GPKD+D DYI
Sbjct:   216 AIANYVKEFSPKLIGLTGTKEEIDQVARAFRVYYSPGPKDEDEDYI 261

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|J9NS66 SCO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 95/166 (57%), Positives = 121/166 (72%)

Query:    18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
             P++WKS+A T   GG +L  M   KK K   LEKER+R+LGK  +GG F L     +P  
Sbjct:    95 PVSWKSLAFTFAIGGALLAGMKYFKKEKTRKLEKERQRSLGKPLLGGPFSLTTHTGEPKT 154

Query:    78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
               D++G+W LIYFGFTHCPD+CP+ELEKM  VV++ID  P +PN+TP+FI++DPERDT E
Sbjct:   155 DRDYVGQWVLIYFGFTHCPDVCPEELEKMIQVVDEIDSIPTLPNLTPLFITIDPERDTKE 214

Query:   138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
              +  YVKEFSPK IGLTGT E++    +AYRVY+S GPKD+D DYI
Sbjct:   215 AIANYVKEFSPKLIGLTGTKEEIDQVARAYRVYYSPGPKDEDEDYI 260

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|O75880 SCO1 "Protein SCO1 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 93/166 (56%), Positives = 123/166 (74%)

Query:    18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
             P++WKS+A+T   GG +L  M ++KK K   LEKER+R++GK  +GG F L     +   
Sbjct:    92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151

Query:    78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
              +D+LG+W LIYFGFTHCPD+CP+ELEKM  VV++ID    +P++TP+FIS+DPERDT E
Sbjct:   152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211

Query:   138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
              +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD+D DYI
Sbjct:   212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 257

GO:0005507 "copper ion binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=TAS

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

ZFIN|ZDB-GENE-041210-173 sco2 "SCO cytochrome oxidase deficient homolog 2 (yeast)" [Danio rerio (taxid:7955)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 79/161 (49%), Positives = 112/161 (69%)

Query:    24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIG-GKFELVDCNNKPVKSEDFL 82
             + VT + GGGI+   W + + K+  ++ +R   L KVA+G G F L+D   +     DFL
Sbjct:    84 LVVTLLFGGGIIGTWWYVHQEKEKRIQMQRLEQLRKVALGQGDFHLLDHTGQRRTKRDFL 143

Query:    83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142
             G W L+YFGFTHCPDICPDELEK+ +VV+ +D  P++P++ P+FI+VDPERD    + +Y
Sbjct:   144 GHWVLLYFGFTHCPDICPDELEKLTSVVHILDKDPSLPSVQPLFITVDPERDDVSAMARY 203

Query:   143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
             VK+F P+ +GLTG+ E+V  A + +RVY S GPKD+D DYI
Sbjct:   204 VKDFHPRLVGLTGSAEEVKQAGRDFRVYASNGPKDEDGDYI 244

GO:0006825 "copper ion transport" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:3818630 Sco2 "SCO cytochrome oxidase deficient homolog 2 (yeast)" [Mus musculus (taxid:10090)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 81/160 (50%), Positives = 113/160 (70%)

Query:    26 VTAVTGGGILFYMWNLKKA-KQNALEKERRRNLGKVAIG-GKFELVDCNNKPVKSEDFLG 83
             +TA+ G G L + W   +A K+   +++R   L + A+G G F L+D   +P    DF G
Sbjct:    52 ITALFGAG-LGWAWLAARAEKEQWRQQQRTEALRQAAVGQGDFSLLDHKGQPRCKADFRG 110

Query:    84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143
             +W L+YFGFTHCPDICPDELEK+  VV K++ +P++P + P+FI+VDPERD    + +YV
Sbjct:   111 QWVLMYFGFTHCPDICPDELEKLVQVVRKLEAEPDLPLVQPVFITVDPERDDVAAMARYV 170

Query:   144 KEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
             +EF P+ +GLTG+ EQVA A + YRVY+SAGPKD+D DYI
Sbjct:   171 QEFHPRLLGLTGSTEQVAHASRNYRVYYSAGPKDEDQDYI 210

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003012 "muscle system process" evidence=IMP

GO:0005507 "copper ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0006878 "cellular copper ion homeostasis" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IMP

GO:0014823 "response to activity" evidence=IMP

GO:0022904 "respiratory electron transport chain" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0055070 "copper ion homeostasis" evidence=IMP

UNIPROTKB|F1NGC6 SCO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 73/122 (59%), Positives = 98/122 (80%)

Query:    62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
             +GG F LV    +P  ++D+LG+W LIYFGFTHCPDICP+EL+KM  VVN+ID  P++P+
Sbjct:     1 LGGPFSLVSHEGQPKTNKDYLGQWVLIYFGFTHCPDICPEELDKMIEVVNEIDRIPSLPD 60

Query:   122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
             +TP+FI++DPERD+ E + +YVKEFSPK +GLTGT  Q+    KA+RVY+S GPKD+D+D
Sbjct:    61 LTPLFITIDPERDSEEAIARYVKEFSPKLVGLTGTRAQIDQVAKAFRVYYSEGPKDEDND 120

Query:   182 YI 183
             YI
Sbjct:   121 YI 122

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68WF1	SCO22_RICTY	No assigned EC number	0.432	0.6666	0.6009	yes	N/A
Q92H76	SCO22_RICCN	No assigned EC number	0.3717	0.8360	0.7463	yes	N/A
Q9ZCW7	SCO22_RICPR	No assigned EC number	0.3850	0.8633	0.7707	yes	N/A
Q5SUC9	SCO1_MOUSE	No assigned EC number	0.5722	0.9071	0.5845	yes	N/A
Q1RIN4	SCO22_RICBR	No assigned EC number	0.3888	0.8579	0.7696	yes	N/A
Q4UKW2	SCO22_RICFE	No assigned EC number	0.3664	0.8579	0.7658	yes	N/A
O75880	SCO1_HUMAN	No assigned EC number	0.5602	0.9071	0.5514	yes	N/A
A1A4J8	SCO1_BOVIN	No assigned EC number	0.5783	0.9071	0.5442	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
cd02968	142	cd02968, SCO, SCO (an acronym for Synthesis of Cyt	2e-53
COG1999	207	COG1999, COG1999, Uncharacterized protein SCO1/Sen	3e-45
pfam02630	152	pfam02630, SCO1-SenC, SCO1/SenC	9e-45
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	1e-05
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	7e-05
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	8e-04

>gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

 Score =  166 bits (423), Expect = 2e-53
 Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 1/122 (0%)

Query: 62  IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
           IG  F L D + +PV   D  GK  L+YFG+THCPD+CP  L  +A  + ++       +
Sbjct: 1   IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGG-DD 59

Query: 122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
           +  +FISVDPERDTPE++  Y K F P +IGLTGT E++ A  KA+ VY+   P+D    
Sbjct: 60  VQVVFISVDPERDTPEVLKAYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDY 119

Query: 182 YI 183
            +
Sbjct: 120 LV 121

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142

>gnl|CDD|224910 COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

 Score =  147 bits (374), Expect = 3e-45
 Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 28  AVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWAL 87
            +     L  +    +A               V IGG FEL D + KP   +D  GK +L
Sbjct: 14  LLLALLFLLLVGLAAEASDKGDRFNLD--AAAVYIGGDFELTDQDGKPFTLKDLKGKPSL 71

Query: 88  IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE-F 146
           ++FG+THCPD+CP  L ++ A++ K+ G+    ++  +FI+VDPERDTPE++ KY +  F
Sbjct: 72  VFFGYTHCPDVCPTTLAELKALLKKL-GEGEGDDVQVVFITVDPERDTPEVLKKYAELNF 130

Query: 147 SPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            P++IGLTGT EQ+    KAY V++S  P D   +Y 
Sbjct: 131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYT 167

Length = 207

>gnl|CDD|202321 pfam02630, SCO1-SenC, SCO1/SenC

 Score =  144 bits (366), Expect = 9e-45
 Identities = 59/128 (46%), Positives = 88/128 (68%), Gaps = 3/128 (2%)

Query: 56  NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
           N  K ++GG F L+D N K   SE+  GK +LIYFGFT+CPDICP  L+++  ++ K+  
Sbjct: 3   NRPKNSLGGPFTLIDQNGKNFTSENLKGKLSLIYFGFTNCPDICPPALDRLTDIIKKLK- 61

Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175
             N+ ++ P+FISVDPERDTP+++ +Y+K F P FIGLTGT +++ +  K ++V++S   
Sbjct: 62  AENI-DVQPVFISVDPERDTPKVLKEYLKNFHPSFIGLTGTTDEIKSVAKKFKVFYSKVI 120

Query: 176 KDKDS-DY 182
            DK   DY
Sbjct: 121 VDKPEQDY 128

This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus. Length = 152

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYF-GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP 124
           FEL D + K V   D+ GKW +++F      P +C  EL  +A +  +         +  
Sbjct: 8   FELPDLDGKEVSLSDYKGKWVVLFFYPKDFTP-VCTTELPALADLYEEFKKL----GVEV 62

Query: 125 IFISVDPE 132
           + +SVD  
Sbjct: 63  LGVSVDSP 70

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F L D + KPV   D  GK  L+ F  + CP  C  E+ ++ A+  +         +  +
Sbjct: 2   FSLPDLDGKPVSLSDLKGKVVLVNFWASWCP-PCRAEMPELEALAKEYKDD----GVEVV 56

Query: 126 FISVDPERDTPELVGKYVKEFSPKF 150
            ++VD   D P  V  ++K++   F
Sbjct: 57  GVNVD--DDDPAAVKAFLKKYGITF 79

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 83  GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142
           GK  L+YF  + CP  C     ++  +  K+      P +  +++S+D + +  +   KY
Sbjct: 1   GKVVLLYFWASWCPP-CRAFTPELKELYEKL----KKPKVEIVYVSLDRDEEEWK---KY 52

Query: 143 VKEFSPKFI 151
           +K+    ++
Sbjct: 53  LKKMPKDWL 61

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG2792|consensus	280		100.0
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.95
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.95
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.91
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.86
PTZ00056	199	glutathione peroxidase; Provisional	99.85
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.85
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.84
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.84
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.84
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.84
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.84
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.84
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.83
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.83
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.82
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.82
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.81
PLN02412	167	probable glutathione peroxidase	99.81
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.81
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.8
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.8
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.8
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.79
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.79
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.78
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.78
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.78
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.78
PTZ00256	183	glutathione peroxidase; Provisional	99.77
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.77
PRK13190	202	putative peroxiredoxin; Provisional	99.76
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.76
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.75
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.74
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.72
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.72
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.72
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.72
PRK13191	215	putative peroxiredoxin; Provisional	99.7
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.7
PRK13599	215	putative peroxiredoxin; Provisional	99.7
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.68
PRK15000	200	peroxidase; Provisional	99.68
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.67
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.66
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.65
PRK13189	222	peroxiredoxin; Provisional	99.64
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.64
KOG2501|consensus	157		99.63
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.55
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.41
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.38
KOG0855|consensus	211		99.26
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.2
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.09
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.09
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.04
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.98
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.98
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.95
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.94
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.93
KOG0910|consensus	150		98.9
KOG0852|consensus	196		98.89
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.88
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.83
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.83
KOG0907|consensus	106		98.82
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.78
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.77
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.76
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.76
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.75
PHA02278	103	thioredoxin-like protein	98.74
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.74
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.71
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.69
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.69
PRK09381	109	trxA thioredoxin; Provisional	98.68
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.63
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.62
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.62
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.6
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.58
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.57
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.56
PTZ00051	98	thioredoxin; Provisional	98.55
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.55
PRK10996	139	thioredoxin 2; Provisional	98.54
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.53
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.51
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.5
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.49
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.48
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.46
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.45
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.41
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.36
KOG0854|consensus	224		98.35
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.34
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.34
PTZ00102	477	disulphide isomerase; Provisional	98.34
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.33
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.3
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.28
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.27
KOG1651|consensus	171		98.27
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.25
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.2
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.18
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.16
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.14
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.1
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.1
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.1
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.08
PTZ00102	477	disulphide isomerase; Provisional	98.07
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.06
PLN02309	457	5'-adenylylsulfate reductase	98.03
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.0
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.96
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.95
PTZ00062	204	glutaredoxin; Provisional	97.9
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	97.81
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	97.81
PHA02125	75	thioredoxin-like protein	97.81
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.81
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.78
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.75
KOG0908|consensus	288		97.75
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.62
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.58
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.47
PF13728	215	TraF: F plasmid transfer operon protein	97.45
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.3
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	97.3
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.29
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.27
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.23
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.23
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.18
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	96.96
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	96.89
KOG1731|consensus	606		96.68
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	96.63
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	96.62
KOG0190|consensus	493		96.51
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	96.37
PRK11200	85	grxA glutaredoxin 1; Provisional	96.27
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	96.18
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.11
KOG0190|consensus	493		96.1
KOG0541|consensus	171		96.09
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.94
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.88
KOG0912|consensus	375		95.88
KOG0191|consensus	383		95.72
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.69
KOG3425|consensus	128		95.67
smart00594	122	UAS UAS domain.	95.41
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.38
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	95.3
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	95.17
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.05
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.94
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	94.85
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	94.82
PHA03050	108	glutaredoxin; Provisional	94.8
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	94.7
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	94.45
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	94.41
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	94.25
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	94.01
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	93.89
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	93.61
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	93.57
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	93.52
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	93.41
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	93.25
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	93.17
PRK12559	131	transcriptional regulator Spx; Provisional	93.15
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	93.12
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	92.74
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.44
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	92.26
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	91.77
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	91.73
PRK10638	83	glutaredoxin 3; Provisional	91.45
PRK10329	81	glutaredoxin-like protein; Provisional	91.36
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	91.23
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	91.11
KOG0911|consensus	227		90.96
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	90.67
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	90.48
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	90.19
KOG1752|consensus	104		89.01
KOG0913|consensus	248		88.58
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	87.21
KOG0191|consensus	383		87.18
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	86.9
COG1393	117	ArsC Arsenate reductase and related proteins, glut	86.87
PRK10824	115	glutaredoxin-4; Provisional	86.18
KOG4277|consensus	468		86.04
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	85.7
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	85.7
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	85.28
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	84.76
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	83.93
PRK10026	141	arsenate reductase; Provisional	83.84
KOG0914|consensus	265		82.37
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	82.11
KOG4498|consensus	197		81.9
PRK01018	99	50S ribosomal protein L30e; Reviewed	81.75
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	81.27
PRK10853	118	putative reductase; Provisional	81.21
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	80.69
PTZ00062	204	glutaredoxin; Provisional	80.4
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	80.18
PRK05583	104	ribosomal protein L7Ae family protein; Provisional	80.1
PTZ00106	108	60S ribosomal protein L30; Provisional	80.03

>KOG2792|consensus

Probab=100.00  E-value=9e-32  Score=205.07  Aligned_cols=169  Identities=59%  Similarity=1.014  Sum_probs=145.1

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh---hcCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEE
Q psy17592         14 TDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERR---RNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYF   90 (183)
Q Consensus        14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f   90 (183)
                      .+.++..|..+.+..++++++++++.+....+......+..   ..++.+.++.+|+|.|.+|+.++-.+|+|||+||||
T Consensus        67 ~r~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~e~~r~~~~~~~gk~~iGGpF~L~d~~Gk~~te~df~Gkw~LiYF  146 (280)
T KOG2792|consen   67 GRPGPFSWRSLLATFALGLGLGGALAYLKKEKARLLEKERESANRTAGKPAIGGPFSLVDHDGKRVTEKDFLGKWSLIYF  146 (280)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccCCceEEEecCCCeecccccccceEEEEe
Confidence            34467778777776666666666666666555554444444   788999999999999999999999999999999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592         91 GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus        91 ~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      .+|+||+||+.|+..|.++.++++++.... +.-|+|++||++|+++.+++|++++++...+|+|..+++.+++++|.||
T Consensus       147 GFThCPDICPdELeKm~~~Vd~i~~~~~~~-~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVY  225 (280)
T KOG2792|consen  147 GFTHCPDICPDELEKMSAVVDEIEAKPGLP-PVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVY  225 (280)
T ss_pred             cccCCCCcChHHHHHHHHHHHHHhccCCCC-ccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEe
Confidence            999999999999999999999998875233 3479999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCC
Q psy17592        171 FSAGPKDKDSDYI  183 (183)
Q Consensus       171 ~~~~~~~~~~~~~  183 (183)
                      |+..+.+++.|||
T Consensus       226 fs~gp~d~~~DYl  238 (280)
T KOG2792|consen  226 FSTGPKDEDQDYL  238 (280)
T ss_pred             eccCCCCCCCCee
Confidence            9998888899997

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.95  E-value=6.3e-28  Score=180.01  Aligned_cols=117  Identities=42%  Similarity=0.871  Sum_probs=106.7

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      .....|+|+|+|++|+++++++++||++||+|.+|.||.+|+..+..|.++++++.++  +.++++|+||+||++|+++.
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~--~~~v~~v~ISvDP~~DTp~~  105 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE--GKDVQFVFISVDPERDTPEV  105 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT--TTTEEEEEEESSTTTC-HHH
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc--cCceEEEEEEeCCCCCCHHH
Confidence            4445689999999999999999999999999999999999999999999999999876  56899999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCC
Q psy17592        139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD  177 (183)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~  177 (183)
                      +++|++.++++|..++++.+++.++++.|+++|.+.+.+
T Consensus       106 L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~  144 (174)
T PF02630_consen  106 LKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPED  144 (174)
T ss_dssp             HHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESS
T ss_pred             HHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccc
Confidence            999999999999999999999999999999999987653

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.95  E-value=8.8e-27  Score=177.94  Aligned_cols=117  Identities=47%  Similarity=0.957  Sum_probs=107.9

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhh-CCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKID-GQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~-~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .+|+|+|++|+.+++.+++||++||+|.+|+||.+|+.++..|.++++++. ..  +.++++++||+||++|+++.+++|
T Consensus        48 g~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~--~~~v~vv~itvDPerDtp~~lk~Y  125 (207)
T COG1999          48 GDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE--GDDVQVVFITVDPERDTPEVLKKY  125 (207)
T ss_pred             CceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc--CCCEEEEEEEECCCCCCHHHHHHH
Confidence            389999999999999999999999999999999999999999999999998 44  779999999999999999999999


Q ss_pred             HH-HhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCCCCCCC
Q psy17592        143 VK-EFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDY  182 (183)
Q Consensus       143 ~~-~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~~~  182 (183)
                      ++ .+++.|.+++|+.+.+.+++++|+|+|++.+.+...+|
T Consensus       126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y  166 (207)
T COG1999         126 AELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNY  166 (207)
T ss_pred             hcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCc
Confidence            99 77899999999999999999999999987765543344

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.91  E-value=9.2e-24  Score=152.03  Aligned_cols=112  Identities=46%  Similarity=0.895  Sum_probs=102.1

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .|+|++.|.+|+.+++++++||++||+||++||+++|..+++.|+++++++++++ .+++++++|+.|+.+|+++.+++|
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~-~~~v~~v~vs~d~~~d~~~~~~~~   80 (142)
T cd02968           2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADG-GDDVQVVFISVDPERDTPEVLKAY   80 (142)
T ss_pred             CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhh-cCceEEEEEEECCCCCCHHHHHHH
Confidence            4899999999999999999999999999999999779999999999999997641 036999999999988899999999


Q ss_pred             HHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       143 ~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                      +++++.+|+++.++.+....++++||+.+...+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  113 (142)
T cd02968          81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVP  113 (142)
T ss_pred             HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecC
Confidence            999999999999988778889999999988764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.86  E-value=7e-21  Score=141.40  Aligned_cols=104  Identities=23%  Similarity=0.306  Sum_probs=91.9

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .+..+...|+|++.+.+|+.+++++++||+++|+||++||+. |+.+++.|.++++++.+.    ++++++|+.|   ++
T Consensus        34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~-C~~~~~~l~~~~~~~~~~----~~~vi~i~~d---~~  105 (173)
T PRK03147         34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP-CEKEMPYMNELYPKYKEK----GVEIIAVNVD---ET  105 (173)
T ss_pred             ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC----CeEEEEEEcC---CC
Confidence            355666779999999999999999999999999999999997 999999999999999865    7999999998   57


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      .+.+++|.++++.+|+.+.+...   .+.+.||+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~  137 (173)
T PRK03147        106 ELAVKNFVNRYGLTFPVAIDKGR---QVIDAYGVG  137 (173)
T ss_pred             HHHHHHHHHHhCCCceEEECCcc---hHHHHcCCC
Confidence            78999999999999998876544   477888865

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.85  E-value=5.5e-21  Score=145.44  Aligned_cols=89  Identities=9%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             ccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----CCCCcH
Q psy17592         61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----PERDTP  136 (183)
Q Consensus        61 ~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p~~d~~  136 (183)
                      ...|+|+++|.+|+.+++++++||++||+||+||||+ |..++|.|++++++++++    +++||+|+.|    ++.|++
T Consensus        17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~-C~~e~p~L~~l~~~~~~~----g~~vvgv~~~~~~~~e~d~~   91 (199)
T PTZ00056         17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGL-TKKHVDQMNRLHSVFNPL----GLEILAFPTSQFLNQEFPNT   91 (199)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCC-hHHHHHHHHHHHHHHhcC----ceEEEEecchhccCCCCCCH
Confidence            3459999999999999999999999999999999998 999999999999999866    7999999975    234788


Q ss_pred             HHHHHHHHHhCCCeEEec
Q psy17592        137 ELVGKYVKEFSPKFIGLT  154 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~  154 (183)
                      +.+++|+++++.+|+.+.
T Consensus        92 e~~~~f~~~~~~~fpvl~  109 (199)
T PTZ00056         92 KDIRKFNDKNKIKYNFFE  109 (199)
T ss_pred             HHHHHHHHHcCCCceeee
Confidence            999999999999999864

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.85  E-value=8.9e-21  Score=138.51  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPEL  138 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~  138 (183)
                      .|+|+++|.+|+.+++++++||++||+||++|||  |..++|.|++++++++++    ++++++|+.|.    +.++++.
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~--C~~e~p~l~~l~~~~~~~----~~~vv~v~~~~~~~~~~~~~~~   75 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG--FTPQYEGLEALYEKYKDR----GLVVLGFPCNQFGGQEPGSNEE   75 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC--chHHHHHHHHHHHHhcCC----CEEEEEeccCccccCCCCCHHH
Confidence            3899999999999999999999999999999998  999999999999999765    79999999864    2367899


Q ss_pred             HHHHHHH-hCCCeEEecC
Q psy17592        139 VGKYVKE-FSPKFIGLTG  155 (183)
Q Consensus       139 ~~~~~~~-~~~~~~~l~~  155 (183)
                      +++|+++ ++.+|+.+.+
T Consensus        76 ~~~f~~~~~~~~fp~~~d   93 (152)
T cd00340          76 IKEFCETNYGVTFPMFAK   93 (152)
T ss_pred             HHHHHHHhcCCCceeeee
Confidence            9999997 7999998853

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.84  E-value=5.9e-21  Score=143.81  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CcccCCCeEEEcCC--CCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         59 KVAIGGKFELVDCN--NKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        59 ~~~~~p~f~l~d~~--G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .+...|+|++.|.+  |+.++++++ +||++||+||++|||+ |+.++|.|.+++++        ++++++|+.|   |+
T Consensus        41 ~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~-C~~e~p~l~~l~~~--------~~~vi~v~~~---~~  108 (185)
T PRK15412         41 IGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSAQ--------GIRVVGMNYK---DD  108 (185)
T ss_pred             cCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHc--------CCEEEEEECC---CC
Confidence            34556999999998  477777766 7999999999999998 99999999988642        6899999987   67


Q ss_pred             HHHHHHHHHHhCCCeEE-ecCCHHHHHHHHhhcCeeE
Q psy17592        136 PELVGKYVKEFSPKFIG-LTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~~  171 (183)
                      ++.+++|+++++.+|+. +.++..   .++++||+.-
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~gv~~  142 (185)
T PRK15412        109 RQKAISWLKELGNPYALSLFDGDG---MLGLDLGVYG  142 (185)
T ss_pred             HHHHHHHHHHcCCCCceEEEcCCc---cHHHhcCCCc
Confidence            78999999999999875 444433   3677888653

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.84  E-value=2e-20  Score=135.39  Aligned_cols=102  Identities=26%  Similarity=0.410  Sum_probs=87.6

Q ss_pred             cccCCCeEEEc--CCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         60 VAIGGKFELVD--CNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        60 ~~~~p~f~l~d--~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+|+|++++  .+|+.+++++++||++||+||++ |||+ |..++|.|.+++++++++    ++.+++|+.+.   +.
T Consensus         3 G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~-C~~~~p~l~~l~~~~~~~----~v~~v~v~~~~---~~   74 (146)
T PF08534_consen    3 GDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPP-CRKELPYLNELQEKYKDK----GVDVVGVSSDD---DP   74 (146)
T ss_dssp             TSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT----TCEEEEEEESS---SH
T ss_pred             CCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCc-chhhhhhHHhhhhhhccC----ceEEEEecccC---CH
Confidence            45569999966  99999999999999999999999 9998 999999999999998876    89999999983   33


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      . +++|+++++.+|+.+.++...   ++++||+.+..
T Consensus        75 ~-~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~  107 (146)
T PF08534_consen   75 P-VREFLKKYGINFPVLSDPDGA---LAKALGVTIME  107 (146)
T ss_dssp             H-HHHHHHHTTTTSEEEEETTSH---HHHHTTCEEEC
T ss_pred             H-HHHHHHhhCCCceEEechHHH---HHHHhCCcccc
Confidence            4 999999999999999885444   89999987553

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.84  E-value=2.1e-20  Score=136.68  Aligned_cols=105  Identities=22%  Similarity=0.342  Sum_probs=91.6

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+||++ |||. |+.+++.|++++++++++    ++++|+|+.|    +
T Consensus         4 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~-C~~~~~~l~~~~~~~~~~----~v~vi~Is~d----~   74 (154)
T PRK09437          4 LKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPG-CTVQACGLRDNMDELKKA----GVVVLGISTD----K   74 (154)
T ss_pred             CCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEcCC----C
Confidence            3445667999999999999999999999999999997 5665 999999999999999866    7999999987    5


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      ++.+++|+++++.+|+.+.++..   .++++||+.+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~gv~~~~  109 (154)
T PRK09437         75 PEKLSRFAEKELLNFTLLSDEDH---QVAEQFGVWGEK  109 (154)
T ss_pred             HHHHHHHHHHhCCCCeEEECCCc---hHHHHhCCCccc
Confidence            79999999999999999987653   488999987654

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.84  E-value=1.7e-20  Score=135.45  Aligned_cols=101  Identities=23%  Similarity=0.239  Sum_probs=86.4

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      +..+|+|++.|.+|+.+++++++||++||+||++| ||+ |..+++.|+++++++.      ++.+|+|+.|    +++.
T Consensus         3 G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~~------~~~vi~Is~d----~~~~   71 (143)
T cd03014           3 GDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPV-CATQTKRFNKEAAKLD------NTVVLTISAD----LPFA   71 (143)
T ss_pred             CCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCc-CHHHHHHHHHHHHhcC------CCEEEEEECC----CHHH
Confidence            45569999999999999999999999999999999 586 9999999999999862      6899999987    4678


Q ss_pred             HHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        139 VGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       139 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +++|.++++. +++.+.+..  ...++++||++...
T Consensus        72 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~  105 (143)
T cd03014          72 QKRWCGAEGVDNVTTLSDFR--DHSFGKAYGVLIKD  105 (143)
T ss_pred             HHHHHHhcCCCCceEeecCc--ccHHHHHhCCeecc
Confidence            8999999985 788887753  24589999998653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.84  E-value=1.9e-20  Score=138.89  Aligned_cols=103  Identities=21%  Similarity=0.228  Sum_probs=87.5

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      ..+..+|+|++.|.+|+.+++++++||++||+||++| ||+ |..|++.|+++++++.      ++++++||.|    ++
T Consensus        19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~-C~~e~~~l~~~~~~~~------~~~vv~vs~D----~~   87 (167)
T PRK00522         19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGV-CATSVRKFNQEAAELD------NTVVLCISAD----LP   87 (167)
T ss_pred             CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCc-cHHHHHHHHHHHHHcC------CcEEEEEeCC----CH
Confidence            4456679999999999999999999999999999999 887 9999999999998862      6999999987    56


Q ss_pred             HHHHHHHHHhCCC-eEEecCCHHHHHHHHhhcCeeEee
Q psy17592        137 ELVGKYVKEFSPK-FIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       137 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +.+++|+++++.. ++.+.+...  ..++++||+...+
T Consensus        88 ~~~~~f~~~~~~~~~~~lsD~~~--~~~~~~~gv~~~~  123 (167)
T PRK00522         88 FAQKRFCGAEGLENVITLSDFRD--HSFGKAYGVAIAE  123 (167)
T ss_pred             HHHHHHHHhCCCCCceEeecCCc--cHHHHHhCCeecc
Confidence            7889999999976 677776432  2489999987654

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.84  E-value=8.6e-20  Score=137.92  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             CCCcccCCCeEEEcCCCCeeecC--ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSE--DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      +..+..+|+|+++|.+|+.++++  +++||+++|+||++|||+ |+.++|.+++++++.       ++.+++|+.    |
T Consensus        46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~-C~~~lp~l~~~~~~~-------~~~vv~Is~----~  113 (189)
T TIGR02661        46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPV-CDKLFPIIKSIARAE-------ETDVVMISD----G  113 (189)
T ss_pred             CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChh-HHHHHHHHHHHHHhc-------CCcEEEEeC----C
Confidence            34566679999999999999994  579999999999999997 999999999988643       467888884    4


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++.+++|+++++.++..+.. .   .++++.||+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~-~---~~i~~~y~v~  145 (189)
T TIGR02661       114 TPAEHRRFLKDHELGGERYVV-S---AEIGMAFQVG  145 (189)
T ss_pred             CHHHHHHHHHhcCCCcceeec-h---hHHHHhccCC
Confidence            678999999999987654432 2   3477888864

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.83  E-value=3.5e-20  Score=130.20  Aligned_cols=100  Identities=27%  Similarity=0.424  Sum_probs=90.8

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      +..+|+|++++.+|+.+++++++||++||+||++ |||. |..+++.|++++++++++    ++++++|+.|    +++.
T Consensus         2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~-c~~~l~~l~~~~~~~~~~----~~~vi~is~d----~~~~   72 (124)
T PF00578_consen    2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPF-CQAELPELNELYKKYKDK----GVQVIGISTD----DPEE   72 (124)
T ss_dssp             TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT----TEEEEEEESS----SHHH
T ss_pred             cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccc-cccchhHHHHHhhhhccc----eEEeeecccc----cccc
Confidence            3456999999999999999999999999999999 9997 999999999999999976    8999999987    6679


Q ss_pred             HHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      +++|.++++.+|+.+.+....   +++.||+..
T Consensus        73 ~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~  102 (124)
T PF00578_consen   73 IKQFLEEYGLPFPVLSDPDGE---LAKAFGIED  102 (124)
T ss_dssp             HHHHHHHHTCSSEEEEETTSH---HHHHTTCEE
T ss_pred             hhhhhhhhccccccccCcchH---HHHHcCCcc
Confidence            999999999999999885544   889999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.83  E-value=2.6e-20  Score=135.07  Aligned_cols=105  Identities=25%  Similarity=0.305  Sum_probs=90.9

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCC-CEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      .+...|+|++.+.+|+.+++++++| |+++|+|| ++|||. |..++|.|++++++++++    ++++++|+.|    ++
T Consensus         3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~----~v~vi~vs~d----~~   73 (149)
T cd03018           3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAA----GAEVLGISVD----SP   73 (149)
T ss_pred             CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhC----CCEEEEecCC----CH
Confidence            3556699999999999999999999 99999888 999997 999999999999999865    7999999987    57


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +.+++|+++++.+|+.+.+... ...+++.||+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~g~~~~~  109 (149)
T cd03018          74 FSLRAWAEENGLTFPLLSDFWP-HGEVAKAYGVFDED  109 (149)
T ss_pred             HHHHHHHHhcCCCceEecCCCc-hhHHHHHhCCcccc
Confidence            8899999999999999887541 24588999988643

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.82  E-value=5.1e-20  Score=133.07  Aligned_cols=93  Identities=14%  Similarity=0.240  Sum_probs=75.1

Q ss_pred             CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCC---CCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         74 KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP---NVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        74 ~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~---~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      +.+++++++||+++|+|||||||+ |+.++|.|.+++++++++.   ..+++++|+|+.|   ++.+.+++|+++++..|
T Consensus        16 ~~~~ls~~kgk~vlL~FwAsWCpp-Cr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D---~~~~~~~~f~~~~~~~~   91 (146)
T cd03008          16 EREIVARLENRVLLLFFGAVVSPQ-CQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD---QSEQQQESFLKDMPKKW   91 (146)
T ss_pred             ccccHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC---CCHHHHHHHHHHCCCCc
Confidence            346788999999999999999998 9999999999999887531   1347999999998   56788999999999888


Q ss_pred             EEecCCHHHHHHHHhhcCee
Q psy17592        151 IGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       151 ~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+.-..+.-..+++.||+.
T Consensus        92 ~~~p~~~~~~~~l~~~y~v~  111 (146)
T cd03008          92 LFLPFEDEFRRELEAQFSVE  111 (146)
T ss_pred             eeecccchHHHHHHHHcCCC
Confidence            66533333334688889874

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.82  E-value=9.3e-20  Score=130.81  Aligned_cols=100  Identities=23%  Similarity=0.310  Sum_probs=89.5

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      .+|+|+++|.+|+.+++++++||++||+|| ++|||. |..+++.|+++++++.++    ++++|+|+.|    +++.++
T Consensus         2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~----~~~vv~is~d----~~~~~~   72 (140)
T cd03017           2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPG-CTKEACDFRDLYEEFKAL----GAVVIGVSPD----SVESHA   72 (140)
T ss_pred             CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEcCC----CHHHHH
Confidence            359999999999999999999999999999 588996 999999999999999865    7999999987    678999


Q ss_pred             HHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +|+++++.+|+.+.+...   .++++||+....
T Consensus        73 ~~~~~~~~~~~~l~D~~~---~~~~~~gv~~~~  102 (140)
T cd03017          73 KFAEKYGLPFPLLSDPDG---KLAKAYGVWGEK  102 (140)
T ss_pred             HHHHHhCCCceEEECCcc---HHHHHhCCcccc
Confidence            999999999999987654   488999988764

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.81  E-value=1.8e-19  Score=133.99  Aligned_cols=102  Identities=23%  Similarity=0.328  Sum_probs=91.5

Q ss_pred             cCCCeEEEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC----CcH
Q psy17592         62 IGGKFELVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER----DTP  136 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~----d~~  136 (183)
                      ..|+|++.|.+|+.++++++ +||++||+||++|||. |..+++.|.++++++.++    ++++|+|++|+..    |++
T Consensus         3 ~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~-c~~~~~~l~~l~~~~~~~----~v~~v~is~d~~~~~~~d~~   77 (171)
T cd02969           3 PAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPY-VKAIEDRLNRLAKEYGAK----GVAVVAINSNDIEAYPEDSP   77 (171)
T ss_pred             cCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHHhhC----CeEEEEEecCccccccccCH
Confidence            45999999999999999998 8999999999999997 999999999999999765    7999999999743    689


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      +.+++|+++++.+|+.+.+....   +++.||+..
T Consensus        78 ~~~~~~~~~~~~~~~~l~D~~~~---~~~~~~v~~  109 (171)
T cd02969          78 ENMKAKAKEHGYPFPYLLDETQE---VAKAYGAAC  109 (171)
T ss_pred             HHHHHHHHHCCCCceEEECCchH---HHHHcCCCc
Confidence            99999999999999999887654   788888754

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PLN02412 probable glutathione peroxidase

Probab=99.81  E-value=1.7e-19  Score=133.79  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=78.0

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC----CCc
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE----RDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~----~d~  135 (183)
                      +..+|+|+++|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++    ++.|++|+.|+.    .++
T Consensus         6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~-c~~e~~~l~~l~~~~~~~----g~~vvgv~~~~~~~~~~~~   80 (167)
T PLN02412          6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGL-TDSNYKELNVLYEKYKEQ----GFEILAFPCNQFLGQEPGS   80 (167)
T ss_pred             CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCC-hHHHHHHHHHHHHHHhhC----CcEEEEecccccccCCCCC
Confidence            34569999999999999999999999999999999998 999999999999999876    799999998742    245


Q ss_pred             HHHHHH-HHHHhCCCeEEec
Q psy17592        136 PELVGK-YVKEFSPKFIGLT  154 (183)
Q Consensus       136 ~~~~~~-~~~~~~~~~~~l~  154 (183)
                      .+.+.+ |.++++.+|+.+.
T Consensus        81 ~~~~~~~~~~~~~~~fpvl~  100 (167)
T PLN02412         81 NEEIQQTVCTRFKAEFPIFD  100 (167)
T ss_pred             HHHHHHHHHHccCCCCceEe
Confidence            556555 4688999999875

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.81  E-value=8.8e-20  Score=141.49  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=79.7

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCc
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~  135 (183)
                      +..+|+|+++|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++    +++||+|+.|.    +.++
T Consensus        76 g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~-c~~e~p~L~~L~~~~~~~----Gv~VIgV~~d~~~~~e~~s  150 (236)
T PLN02399         76 EKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGL-TSSNYSELSHLYEKYKTQ----GFEILAFPCNQFGGQEPGS  150 (236)
T ss_pred             CCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcc-hHHHHHHHHHHHHHHhcC----CcEEEEEecccccccCCCC
Confidence            44569999999999999999999999999999999998 999999999999999866    79999999863    2357


Q ss_pred             HHHHHHHH-HHhCCCeEEec
Q psy17592        136 PELVGKYV-KEFSPKFIGLT  154 (183)
Q Consensus       136 ~~~~~~~~-~~~~~~~~~l~  154 (183)
                      .+.+++|+ ++++.+|+.+.
T Consensus       151 ~~ei~~f~~~~~g~~fPvl~  170 (236)
T PLN02399        151 NPEIKQFACTRFKAEFPIFD  170 (236)
T ss_pred             HHHHHHHHHHhcCCCCcccc
Confidence            78899998 67899998864

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.80  E-value=1.9e-19  Score=131.53  Aligned_cols=86  Identities=14%  Similarity=0.291  Sum_probs=76.7

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----CCCCcHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----PERDTPELV  139 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p~~d~~~~~  139 (183)
                      -+|++.|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++    ++.+++|+.+    .+.|+++.+
T Consensus         3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~-c~~~~~~l~~l~~~~~~~----~~~v~~i~~~~~~~~~~d~~~~~   77 (153)
T TIGR02540         3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGF-TDQNYRALQELHRELGPS----HFNVLAFPCNQFGESEPDSSKEI   77 (153)
T ss_pred             ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCc-hhhhHHHHHHHHHHHhhC----CeEEEEEeccccccCCCCCHHHH
Confidence            3799999999999999999999999999999998 999999999999999866    8999999852    123678999


Q ss_pred             HHHHHH-hCCCeEEec
Q psy17592        140 GKYVKE-FSPKFIGLT  154 (183)
Q Consensus       140 ~~~~~~-~~~~~~~l~  154 (183)
                      ++|+++ ++.+|+.+.
T Consensus        78 ~~f~~~~~~~~fp~~~   93 (153)
T TIGR02540        78 ESFARRNYGVTFPMFS   93 (153)
T ss_pred             HHHHHHhcCCCCCccc
Confidence            999986 899998875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR03137 AhpC peroxiredoxin

Probab=99.80  E-value=2.1e-19  Score=135.58  Aligned_cols=101  Identities=20%  Similarity=0.279  Sum_probs=84.3

Q ss_pred             cccCCCeEEEc-CCCC--eeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         60 VAIGGKFELVD-CNNK--PVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d-~~G~--~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+|+|++.+ .+|+  .+++++++||++||+|| ++|||. |..|++.|+++++++.++    ++++++||.|    +
T Consensus         5 G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~-C~~el~~l~~~~~~~~~~----gv~vi~VS~D----~   75 (187)
T TIGR03137         5 NTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFV-CPTELEDLADKYAELKKL----GVEVYSVSTD----T   75 (187)
T ss_pred             CCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCc-CHHHHHHHHHHHHHHHhc----CCcEEEEeCC----C
Confidence            45569999998 6787  67888999999999999 999997 999999999999999865    8999999988    4


Q ss_pred             HHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ++.+++|.+..    +.+|+.+.+..   ..+++.||+++.
T Consensus        76 ~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~  113 (187)
T TIGR03137        76 HFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIE  113 (187)
T ss_pred             HHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCccc
Confidence            56667776654    57888887764   458999999764

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.80  E-value=5.2e-19  Score=126.83  Aligned_cols=99  Identities=23%  Similarity=0.349  Sum_probs=88.9

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .|+|++.|.+|+.+++++++||++||+|| ++||+. |..+++.|.+++++++..    ++.+++|+.|    +++.+++
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~-C~~~~~~l~~~~~~~~~~----~~~~i~is~d----~~~~~~~   72 (140)
T cd02971           2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPV-CTTELCAFRDLAEEFAKG----GAEVLGVSVD----SPFSHKA   72 (140)
T ss_pred             CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEeCC----CHHHHHH
Confidence            48999999999999999999999999999 789997 999999999999999654    7999999987    5788999


Q ss_pred             HHHHh-CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        142 YVKEF-SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       142 ~~~~~-~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      |.+++ +.+|+.+.+...   .+++.||+++..
T Consensus        73 ~~~~~~~~~~~~l~D~~~---~~~~~~g~~~~~  102 (140)
T cd02971          73 WAEKEGGLNFPLLSDPDG---EFAKAYGVLIEK  102 (140)
T ss_pred             HHhcccCCCceEEECCCh---HHHHHcCCcccc
Confidence            99999 899999987654   588999988765

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.79  E-value=6.6e-19  Score=131.23  Aligned_cols=102  Identities=17%  Similarity=0.227  Sum_probs=84.9

Q ss_pred             cccCCCeEEEcCCC----CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         60 VAIGGKFELVDCNN----KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        60 ~~~~p~f~l~d~~G----~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      +..+|+|++.+.+|    +.+++++++||++||+|| ++|||. |..+++.|+++++++.++    ++++++||.|+   
T Consensus         2 G~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~-C~~~l~~l~~~~~~~~~~----~v~vv~Is~d~---   73 (173)
T cd03015           2 GKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFV-CPTEIIAFSDRYEEFKKL----NAEVLGVSTDS---   73 (173)
T ss_pred             CCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEecCC---
Confidence            34569999999887    789999999999999999 899997 999999999999999865    79999999984   


Q ss_pred             cHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        135 TPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       135 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                       .+..+.|.+.+       +.+|+.+.+....   +++.||+++..
T Consensus        74 -~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~---~~~~~gv~~~~  115 (173)
T cd03015          74 -HFSHLAWRNTPRKEGGLGKINFPLLADPKKK---ISRDYGVLDEE  115 (173)
T ss_pred             -HHHHHHHHHhhhhhCCccCcceeEEECCchh---HHHHhCCcccc
Confidence             34555666653       4789999876544   88999987554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.4e-18  Score=125.96  Aligned_cols=106  Identities=23%  Similarity=0.307  Sum_probs=94.6

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+|.+++|+.++|++++||+|||+|+ ..++|. |..|+..+++.+.++++.    +.++++||.|    +
T Consensus         4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~Tpg-CT~Ea~~Frd~~~ef~~~----~a~V~GIS~D----s   74 (157)
T COG1225           4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPG-CTTEACDFRDLLEEFEKL----GAVVLGISPD----S   74 (157)
T ss_pred             CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCc-chHHHHHHHHHHHHHHhC----CCEEEEEeCC----C
Confidence            44567779999999999999999999999999988 456664 999999999999999876    8999999987    7


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      ++.+++|.++++.+|+.|+++...   ++++||+.-.+.
T Consensus        75 ~~~~~~F~~k~~L~f~LLSD~~~~---v~~~ygv~~~k~  110 (157)
T COG1225          75 PKSHKKFAEKHGLTFPLLSDEDGE---VAEAYGVWGEKK  110 (157)
T ss_pred             HHHHHHHHHHhCCCceeeECCcHH---HHHHhCcccccc
Confidence            899999999999999999988776   999999987654

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.78  E-value=1e-18  Score=124.62  Aligned_cols=94  Identities=22%  Similarity=0.349  Sum_probs=77.2

Q ss_pred             EcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592         69 VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP  148 (183)
Q Consensus        69 ~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~  148 (183)
                      .|.+ +++++++++||++||+||++||++ |+.++|.|++++++++++  ..++++++|++|   ++.+.+++|+++++ 
T Consensus         4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~-C~~~~p~l~~l~~~~~~~--~~~v~vi~Vs~d---~~~~~~~~~~~~~~-   75 (132)
T cd02964           4 LDGE-GVVPVSALEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKEE--GKNFEIVFVSRD---RSEESFNEYFSEMP-   75 (132)
T ss_pred             ccCC-ccccHHHhCCCEEEEEEECCCCch-HHHHHHHHHHHHHHHhhc--CCCeEEEEEecC---CCHHHHHHHHhcCC-
Confidence            3444 589999999999999999999998 999999999999998754  247999999999   46789999999998 


Q ss_pred             CeEEecCCH-HHHHHHHhhcCee
Q psy17592        149 KFIGLTGTV-EQVAAACKAYRVY  170 (183)
Q Consensus       149 ~~~~l~~~~-~~~~~~~~~~gv~  170 (183)
                      .|..+.... .....+++.||+.
T Consensus        76 ~~~~~~~~d~~~~~~~~~~~~v~   98 (132)
T cd02964          76 PWLAVPFEDEELRELLEKQFKVE   98 (132)
T ss_pred             CeEeeccCcHHHHHHHHHHcCCC
Confidence            777765433 3445678888864

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.78  E-value=4.8e-19  Score=125.32  Aligned_cols=96  Identities=19%  Similarity=0.210  Sum_probs=81.5

Q ss_pred             cCCCeEEEcCCC--CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         62 IGGKFELVDCNN--KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        62 ~~p~f~l~d~~G--~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      .+|+|+++|.+|  +.+++++++||+++|+||++|||+ |..++|.|+++.+++       ++++++|+.|   ++.+.+
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~-C~~~~~~l~~l~~~~-------~~~vv~v~~~---~~~~~~   70 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAP-CREEHPVLMALARQG-------RVPIYGINYK---DNPENA   70 (127)
T ss_pred             CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHhc-------CcEEEEEECC---CCHHHH
Confidence            359999999998  889999999999999999999998 999999999997753       4899999987   688999


Q ss_pred             HHHHHHhCCCeEEe-cCCHHHHHHHHhhcCeeE
Q psy17592        140 GKYVKEFSPKFIGL-TGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       140 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~~gv~~  171 (183)
                      ++|+++++.+|+.+ .+..   ..+++.||++.
T Consensus        71 ~~~~~~~~~~~~~~~~D~~---~~~~~~~~v~~  100 (127)
T cd03010          71 LAWLARHGNPYAAVGFDPD---GRVGIDLGVYG  100 (127)
T ss_pred             HHHHHhcCCCCceEEECCc---chHHHhcCCCC
Confidence            99999999988654 3433   34788888754

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.78  E-value=3.2e-18  Score=118.70  Aligned_cols=92  Identities=21%  Similarity=0.348  Sum_probs=77.7

Q ss_pred             CCeEEEcCCCCeeecCccC-CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFL-GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~-gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      |+|+++|.+|+.+++++++ ||+++|+||++||++ |+.++|.++++++++.+     ++.++.++ |   ++.+..++|
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~-C~~~~p~l~~~~~~~~~-----~~~vi~v~-~---~~~~~~~~~   70 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPV-CKKLLPVIRSIARAEAD-----WLDVVLAS-D---GEKAEHQRF   70 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcc-hHhHhHHHHHHHHHhcC-----CcEEEEEe-C---CCHHHHHHH
Confidence            7899999999999999997 999999999999997 99999999999887632     58888775 4   467899999


Q ss_pred             HHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        143 VKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       143 ~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++++. .++.+..     .++++.||+.
T Consensus        71 ~~~~~~~~~p~~~~-----~~~~~~~~~~   94 (114)
T cd02967          71 LKKHGLEAFPYVLS-----AELGMAYQVS   94 (114)
T ss_pred             HHHhCCCCCcEEec-----HHHHhhcCCC
Confidence            999997 4777652     2367888874

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.78  E-value=6.4e-19  Score=131.37  Aligned_cols=96  Identities=19%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             cccCCCeEEEcCCCC--eeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         60 VAIGGKFELVDCNNK--PVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~--~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+|+|+++|.+|+  .++++++ +||+++|+||++|||+ |+.++|.+++++++        ++++++|+.|   ++.
T Consensus        37 G~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~--------~~~vi~V~~~---~~~  104 (173)
T TIGR00385        37 GKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPP-CRAEHPYLNELAKD--------GLPIVGVDYK---DQS  104 (173)
T ss_pred             CCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHc--------CCEEEEEECC---CCh
Confidence            455699999999987  4555565 7999999999999998 99999999988652        6899999987   566


Q ss_pred             HHHHHHHHHhCCCeEE-ecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPKFIG-LTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~  170 (183)
                      +..++|+++++.+|+. +.++..   .+++.||++
T Consensus       105 ~~~~~~~~~~~~~f~~v~~D~~~---~~~~~~~v~  136 (173)
T TIGR00385       105 QNALKFLKELGNPYQAILIDPNG---KLGLDLGVY  136 (173)
T ss_pred             HHHHHHHHHcCCCCceEEECCCC---chHHhcCCe
Confidence            7778999999999874 344433   477778764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.77  E-value=1.9e-18  Score=130.00  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=75.5

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCC
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERD  134 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d  134 (183)
                      ....|+|+++|.+|+.+++++++||++ |+.+|++|||+ |..|+|.|++++++++++    ++.+|+|+.|.    +.+
T Consensus        17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~-C~~e~p~l~~l~~~~~~~----gv~vv~vs~~~~~~~~~~   91 (183)
T PTZ00256         17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGL-TSDHYTQLVELYKQYKSQ----GLEILAFPCNQFMEQEPW   91 (183)
T ss_pred             CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCc-hHHHHHHHHHHHHHHhhC----CcEEEEEecccccccCCC
Confidence            344599999999999999999999964 55669999998 999999999999999865    79999999752    223


Q ss_pred             cHHHHHHHHH-HhCCCeEEec
Q psy17592        135 TPELVGKYVK-EFSPKFIGLT  154 (183)
Q Consensus       135 ~~~~~~~~~~-~~~~~~~~l~  154 (183)
                      +.+.+++|.+ +++.+|+.+.
T Consensus        92 ~~~~~~~f~~~~~~~~fpv~~  112 (183)
T PTZ00256         92 DEPEIKEYVQKKFNVDFPLFQ  112 (183)
T ss_pred             CHHHHHHHHHHhcCCCCCCce
Confidence            5688889975 7788888774

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.77  E-value=1.7e-18  Score=122.49  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=77.7

Q ss_pred             CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC--CCCcHHHHHHHHHHhCCCe
Q psy17592         73 NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP--ERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        73 G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp--~~d~~~~~~~~~~~~~~~~  150 (183)
                      |+++++++++||++||+||++|||+ |..++|.|++++++++++    ++.+++|+.+.  ..++++.+++|+++++.+|
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~-C~~~~p~l~~l~~~~~~~----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~   87 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCIN-CLHTLPYLTDLEQKYKDD----GLVVIGVHSPEFAFERDLANVKSAVLRYGITY   87 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHcCcC----CeEEEEeccCccccccCHHHHHHHHHHcCCCC
Confidence            5789999999999999999999998 999999999999999865    79999998742  1257899999999999999


Q ss_pred             EEecCCHHHHHHHHhhcCee
Q psy17592        151 IGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       151 ~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+.+....   +++.||+.
T Consensus        88 p~~~D~~~~---~~~~~~v~  104 (126)
T cd03012          88 PVANDNDYA---TWRAYGNQ  104 (126)
T ss_pred             CEEECCchH---HHHHhCCC
Confidence            988876544   77788874

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.76  E-value=1.5e-18  Score=132.38  Aligned_cols=104  Identities=14%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEE-EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALI-YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE  137 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll-~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~  137 (183)
                      .+..+|+|++.+.+| .+++++++||+++| +||++|||. |..|++.|++++++++++    ++++++||+|......+
T Consensus         4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~-C~~El~~l~~~~~~f~~~----~~~vi~vS~D~~~~~~~   77 (202)
T PRK13190          4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPV-CTTEFIAFSRRYEDFKKL----GVELVGLSVDSIYSHIA   77 (202)
T ss_pred             CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEeCCCHHHHHH
Confidence            455669999999888 68999999998766 689999997 999999999999999866    89999999984222223


Q ss_pred             HHHHHHHHhC--CCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        138 LVGKYVKEFS--PKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       138 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      .++++.++++  .+|+.+.+...   .++++||+..
T Consensus        78 w~~~~~~~~g~~~~fPll~D~~~---~ia~~ygv~~  110 (202)
T PRK13190         78 WLRDIEERFGIKIPFPVIADIDK---ELAREYNLID  110 (202)
T ss_pred             HHHhHHHhcCCCceEEEEECCCh---HHHHHcCCcc
Confidence            4455555666  47999987654   4899999853

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.76  E-value=3.8e-18  Score=121.40  Aligned_cols=95  Identities=20%  Similarity=0.362  Sum_probs=76.8

Q ss_pred             EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      |.|.+|+.+++++++||++||+||++||++ |+.++|.|+++++++.++  ..++++++|++|   ++.+.+++|.++++
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~~~~~~~~~--~~~~~vv~is~d---~~~~~~~~~~~~~~   76 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKES--GKNFEIVFISWD---RDEESFNDYFSKMP   76 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEECCCChH-HHHHhHHHHHHHHHHHhc--CCCEEEEEEECC---CCHHHHHHHHHcCC
Confidence            568899999999999999999999999998 999999999999998764  347999999999   35678888887753


Q ss_pred             CCeEEecC-CHHHHHHHHhhcCee
Q psy17592        148 PKFIGLTG-TVEQVAAACKAYRVY  170 (183)
Q Consensus       148 ~~~~~l~~-~~~~~~~~~~~~gv~  170 (183)
                        |..+.. +.+....+++.||+.
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~v~   98 (131)
T cd03009          77 --WLAVPFSDRERRSRLNRTFKIE   98 (131)
T ss_pred             --eeEcccCCHHHHHHHHHHcCCC
Confidence              444332 224445788889875

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.75  E-value=1.2e-17  Score=142.12  Aligned_cols=106  Identities=15%  Similarity=0.076  Sum_probs=84.5

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC--CC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE--RD  134 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~--~d  134 (183)
                      +..+..+|+|++.|.+|+.++++  +||+|||+|||+||++ |+.++|.|++++++++.+    ++.||+|+++..  .+
T Consensus        32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCpp-Ck~emP~L~eL~~e~k~~----~v~VI~Vs~~~~~~e~  104 (521)
T PRK14018         32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPL-CLSELGETEKWAQDAKFS----SANLITVASPGFLHEK  104 (521)
T ss_pred             ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHH-HHHHHHHHHHHHHHhccC----CeEEEEEecccccccc
Confidence            34455679999999999999987  8999999999999998 999999999999988754    799999987532  23


Q ss_pred             cHHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        135 TPELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      +.+.+++|.++.+. .++.+.+...   .+++.||+.--
T Consensus       105 ~~~~~~~~~~~~~y~~~pV~~D~~~---~lak~fgV~gi  140 (521)
T PRK14018        105 KDGDFQKWYAGLDYPKLPVLTDNGG---TLAQSLNISVY  140 (521)
T ss_pred             cHHHHHHHHHhCCCcccceeccccH---HHHHHcCCCCc
Confidence            56778888887764 5677765543   47888887543

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.74  E-value=8.9e-18  Score=121.43  Aligned_cols=99  Identities=17%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             CCCeEEEcCCCCeeecCccC-CCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFL-GKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~-gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      +|+|+++|.+|+.++++++. +|++ |++||++|||. |+.+++.|+++++++.+.    ++++|+|+.|    +.+.+.
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~-C~~~~~~l~~~~~~~~~~----~v~vv~V~~~----~~~~~~   72 (149)
T cd02970           2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-CREYLRALSKLLPELDAL----GVELVAVGPE----SPEKLE   72 (149)
T ss_pred             CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChh-HHHHHHHHHHHHHHHHhc----CeEEEEEeCC----CHHHHH
Confidence            48999999999999999875 4655 55557999997 999999999999999865    7999999987    456677


Q ss_pred             HHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +|.++++.+|+.+.++...   +++.||+....
T Consensus        73 ~~~~~~~~~~p~~~D~~~~---~~~~~g~~~~~  102 (149)
T cd02970          73 AFDKGKFLPFPVYADPDRK---LYRALGLVRSL  102 (149)
T ss_pred             HHHHhcCCCCeEEECCchh---HHHHcCceecC
Confidence            8999999999999886544   88999987544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.72  E-value=2.1e-17  Score=116.08  Aligned_cols=93  Identities=15%  Similarity=0.238  Sum_probs=81.6

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      |+|+++|.+|+.+++.+++||+++|+||++||++ |+.++|.|++++++         +.+++|++|+  ++++.+++|+
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~-C~~~~~~l~~~~~~---------~~~i~i~~~~--~~~~~~~~~~   68 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPV-CRFTSPTVNQLAAD---------YPVVSVALRS--GDDGAVARFM   68 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChh-hhhhChHHHHHHhh---------CCEEEEEccC--CCHHHHHHHH
Confidence            7899999999999999999999999999999997 99999999999864         5678899884  5789999999


Q ss_pred             HHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        144 KEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       144 ~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      ++++.+|+.+.++..   .+++.|++.-
T Consensus        69 ~~~~~~~~~~~d~~~---~~~~~~~i~~   93 (123)
T cd03011          69 QKKGYGFPVINDPDG---VISARWGVSV   93 (123)
T ss_pred             HHcCCCccEEECCCc---HHHHhCCCCc
Confidence            999999998877554   4788888643

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.72  E-value=4.6e-17  Score=122.61  Aligned_cols=101  Identities=17%  Similarity=0.202  Sum_probs=84.0

Q ss_pred             cccCCCeEEEcC-CC--CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         60 VAIGGKFELVDC-NN--KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d~-~G--~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+|+|+.... +|  ..++|++++||++||+|| ++|||. |..|++.|+++++++.+.    ++++++||.|    +
T Consensus         5 ~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~-C~~el~~l~~~~~~f~~~----g~~vigIS~D----~   75 (187)
T PRK10382          5 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-CPTELGDVADHYEELQKL----GVDVYSVSTD----T   75 (187)
T ss_pred             CCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHhC----CCEEEEEeCC----C
Confidence            345599997763 44  467788999999999999 999996 999999999999999866    8999999987    6


Q ss_pred             HHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      +...++|.+..    +.+|+.+.+...   .++++||+...
T Consensus        76 ~~~~~a~~~~~~~~~~l~fpllsD~~~---~ia~~ygv~~~  113 (187)
T PRK10382         76 HFTHKAWHSSSETIAKIKYAMIGDPTG---ALTRNFDNMRE  113 (187)
T ss_pred             HHHHHHHHHhhccccCCceeEEEcCch---HHHHHcCCCcc
Confidence            78888998774    688999987644   49999998643

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.72  E-value=5.3e-17  Score=111.27  Aligned_cols=96  Identities=28%  Similarity=0.496  Sum_probs=85.6

Q ss_pred             CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592         65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK  144 (183)
Q Consensus        65 ~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~  144 (183)
                      +|++.+.+|+.+++++++||+++|+||++||+. |...++.|.++.+++.+.    ++.+++|++|+.  +++.+++|++
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~----~~~~~~v~~d~~--~~~~~~~~~~   73 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPP-CRAEMPELEALAKEYKDD----GVEVVGVNVDDD--DPAAVKAFLK   73 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEeecccChh-HHHHhHHHHHHHHHhCCC----CeEEEEEECCCC--CHHHHHHHHH
Confidence            478899999999999999999999999999997 999999999999998744    799999999963  6999999999


Q ss_pred             HhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        145 EFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++.+|+.+.+...   ++.+.||+.
T Consensus        74 ~~~~~~~~~~~~~~---~~~~~~~~~   96 (116)
T cd02966          74 KYGITFPVLLDPDG---ELAKAYGVR   96 (116)
T ss_pred             HcCCCcceEEcCcc---hHHHhcCcC
Confidence            99999999987643   478888874

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.72  E-value=4.9e-17  Score=121.89  Aligned_cols=85  Identities=14%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPEL  138 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~  138 (183)
                      .++|+++|.+|+.+++++++||++||+||||||+. |. +++.|++++++++++    +++|++|+.+-    +.++.+.
T Consensus         5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~-~~-q~~~L~~L~~~y~~~----gl~Vlg~p~nqf~~qe~~~~~e   78 (183)
T PRK10606          5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGL-TP-QYEQLENIQKAWADQ----GFVVLGFPCNQFLGQEPGSDEE   78 (183)
T ss_pred             ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCC-cH-HHHHHHHHHHHHhhC----CeEEEEeeccccccCCCCCHHH
Confidence            37999999999999999999999999999999997 85 799999999999866    89999998852    2367899


Q ss_pred             HHHHHH-HhCCCeEEe
Q psy17592        139 VGKYVK-EFSPKFIGL  153 (183)
Q Consensus       139 ~~~~~~-~~~~~~~~l  153 (183)
                      +++|++ +++.+|+.+
T Consensus        79 i~~f~~~~~g~~Fpv~   94 (183)
T PRK10606         79 IKTYCRTTWGVTFPMF   94 (183)
T ss_pred             HHHHHHHccCCCceeE
Confidence            999997 789888876

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.70  E-value=5.3e-17  Score=124.88  Aligned_cols=102  Identities=16%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEE-EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALI-YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE  137 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll-~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~  137 (183)
                      .+..+|+|++.+.+|+...+++++|||++| +||++|||. |..|++.|+++++++++.    ++++++||+|.    ..
T Consensus         9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpv-C~tEl~~l~~~~~ef~~~----g~~VigvS~Ds----~~   79 (215)
T PRK13191          9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPV-CTTEFYSFAKKYEEFKKL----NTELIGLSVDS----NI   79 (215)
T ss_pred             CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEECCC----HH
Confidence            455679999999999754445589998765 889999996 999999999999999876    89999999983    34


Q ss_pred             HHHH---HHHH---hCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        138 LVGK---YVKE---FSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       138 ~~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ..++   +.++   ++.+|+.+.+...   .++++||+...
T Consensus        80 ~h~aw~~~~~~~~~~~i~fPllsD~~~---~ia~~ygv~~~  117 (215)
T PRK13191         80 SHIEWVMWIEKNLKVEVPFPIIADPMG---NVAKRLGMIHA  117 (215)
T ss_pred             HHHHHHhhHHHhcCCCCceEEEECCch---HHHHHcCCccc
Confidence            4444   3443   3578999988654   49999998653

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.70  E-value=1.2e-16  Score=122.13  Aligned_cols=98  Identities=22%  Similarity=0.322  Sum_probs=80.5

Q ss_pred             ccCCCeEEEcCCCCeeecCccCC-CEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         61 AIGGKFELVDCNNKPVKSEDFLG-KWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        61 ~~~p~f~l~d~~G~~v~l~~~~g-k~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      ..+|+|++.+.+|+ +++++++| |++ |++||++|||. |..|++.|+++++++++.    ++++++||+|+    .+.
T Consensus         3 ~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~-C~~el~~l~~~~~~f~~~----gv~vigvS~D~----~~~   72 (203)
T cd03016           3 DTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPV-CTTELGAFAKLAPEFKKR----NVKLIGLSVDS----VES   72 (203)
T ss_pred             CCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCc-CHHHHHHHHHHHHHHHHc----CCEEEEEECCC----HHH
Confidence            45699999999985 89999998 775 55899999996 999999999999999876    89999999983    455


Q ss_pred             HHHHHHH------hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        139 VGKYVKE------FSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       139 ~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      .++|.++      .+.+|+.+.+...   .++++||+..
T Consensus        73 ~~~~~~~i~~~~~~~~~fpil~D~~~---~ia~~yg~~~  108 (203)
T cd03016          73 HIKWIEDIEEYTGVEIPFPIIADPDR---EVAKLLGMID  108 (203)
T ss_pred             HHHHHhhHHHhcCCCCceeEEECchH---HHHHHcCCcc
Confidence            5555544      5789999988654   4899999864

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.70  E-value=7.4e-17  Score=124.04  Aligned_cols=100  Identities=21%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      +..+|+|++.+.+|+...+++++|||+ |++||++|||. |..|++.|+++++++.+.    ++++|+||.|    +.+.
T Consensus         5 Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpv-Ct~El~~l~~~~~~f~~~----gv~vigIS~D----~~~~   75 (215)
T PRK13599          5 GEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPV-CTTEFVEFARKANDFKEL----NTELIGLSVD----QVFS   75 (215)
T ss_pred             CCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEeCC----CHHH
Confidence            445699999999999888899999986 67999999996 999999999999999876    7999999998    3444


Q ss_pred             HHH---HHHH---hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        139 VGK---YVKE---FSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       139 ~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      .++   ++++   ++.+|+.+.++...   +++.||+..
T Consensus        76 ~~~w~~~i~~~~~~~i~fPil~D~~~~---va~~yg~~~  111 (215)
T PRK13599         76 HIKWVEWIKDNTNIAIPFPVIADDLGK---VSNQLGMIH  111 (215)
T ss_pred             HHHHHHhHHHhcCCCCceeEEECCCch---HHHHcCCCc
Confidence            444   4444   35789999876554   889999753

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.68  E-value=2.5e-16  Score=105.79  Aligned_cols=82  Identities=24%  Similarity=0.411  Sum_probs=70.0

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHH
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA  162 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (183)
                      ||+++|+||++||++ |..++|.|.++++++++.   +++++|+|+.|   ++.+..+++.++++.+|..+..+.+....
T Consensus         1 gK~~ll~fwa~~c~~-c~~~~~~l~~l~~~~~~~---~~v~~v~Vs~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (95)
T PF13905_consen    1 GKPVLLYFWASWCPP-CKKELPKLKELYKKYKKK---DDVEFVFVSLD---EDEEEWKKFLKKNNFPWYNVPFDDDNNSE   73 (95)
T ss_dssp             TSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEE-S---SSHHHHHHHHHTCTTSSEEEETTTHHHHH
T ss_pred             CCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCCC---CCEEEEEEEeC---CCHHHHHHHHHhcCCCceEEeeCcchHHH
Confidence            899999999999998 999999999999999842   48999999999   57889999999998899888776666778


Q ss_pred             HHhhcCeeE
Q psy17592        163 ACKAYRVYF  171 (183)
Q Consensus       163 ~~~~~gv~~  171 (183)
                      +.+.|++..
T Consensus        74 l~~~~~i~~   82 (95)
T PF13905_consen   74 LLKKYGING   82 (95)
T ss_dssp             HHHHTT-TS
T ss_pred             HHHHCCCCc
Confidence            999998763

...

>PRK15000 peroxidase; Provisional

Probab=99.68  E-value=1.7e-16  Score=120.82  Aligned_cols=101  Identities=14%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             cccCCCeEEEcCC--CCe---eecCcc-CCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         60 VAIGGKFELVDCN--NKP---VKSEDF-LGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        60 ~~~~p~f~l~d~~--G~~---v~l~~~-~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      +..+|+|++.+..  |+.   ++++++ +|||+||+||++ |||. |+.|++.|++++++++++    ++++++||.|  
T Consensus         5 g~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~v-C~~El~~l~~~~~~f~~~----g~~vigvS~D--   77 (200)
T PRK15000          5 TRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFV-CPSELIAFDKRYEEFQKR----GVEVVGVSFD--   77 (200)
T ss_pred             CCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEECC--
Confidence            4456999999863  454   455555 899999999996 8896 999999999999999876    8999999998  


Q ss_pred             CCcHHHHHHHHH----HhC---CCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        133 RDTPELVGKYVK----EFS---PKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       133 ~d~~~~~~~~~~----~~~---~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                        +.+..+.|.+    +.+   .+|+.+.+...   .+++.||+...
T Consensus        78 --~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~---~ia~~ygv~~~  119 (200)
T PRK15000         78 --SEFVHNAWRNTPVDKGGIGPVKYAMVADVKR---EIQKAYGIEHP  119 (200)
T ss_pred             --CHHHHHHHHhhHHHhCCccccCceEEECCCc---HHHHHcCCccC
Confidence              4455555543    344   58999988654   48999998753

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.67  E-value=1.2e-16  Score=121.69  Aligned_cols=102  Identities=19%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             CcccCCCeEEEc----CCCCeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         59 KVAIGGKFELVD----CNNKPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        59 ~~~~~p~f~l~d----~~G~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      .+..+|+|++.+    .+|+.+++++++||++||+||+ +||+. |+.+++.|.++++++.+.    ++++|+||.|+. 
T Consensus         8 ~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~-C~~e~~~l~~~~~~f~~~----g~~vv~IS~d~~-   81 (199)
T PTZ00253          8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-CPTEIIQFSDSVKRFNEL----NCEVLACSMDSE-   81 (199)
T ss_pred             cCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCc-CHHHHHHHHHHHHHHHHc----CCEEEEEeCCCH-
Confidence            345669999765    4668999999999999999995 77995 999999999999999876    899999999842 


Q ss_pred             CcHHHHHHHHH--H----h-CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 DTPELVGKYVK--E----F-SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 d~~~~~~~~~~--~----~-~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                         ....+|..  +    . +.+|+.+.+...   ++++.||++..
T Consensus        82 ---~~~~~~~~~~~~~~~~~~~~fpll~D~~~---~ia~~ygv~~~  121 (199)
T PTZ00253         82 ---YAHLQWTLQERKKGGLGTMAIPMLADKTK---SIARSYGVLEE  121 (199)
T ss_pred             ---HHHHHHHhChHhhCCccccccceEECcHh---HHHHHcCCccc
Confidence               22333322  1    1 368999988654   48999998644

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.67  E-value=4.3e-16  Score=122.46  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=82.8

Q ss_pred             CCcccCCCeEEEc-CCCC--eeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         58 GKVAIGGKFELVD-CNNK--PVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        58 ~~~~~~p~f~l~d-~~G~--~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      ..+..+|+|++.+ .+|+  .++++++ +||++||+|| ++|||. |..|++.++++++++++.    ++++++||.|  
T Consensus        69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpv-Ct~El~~l~~~~~ef~~~----gv~VigIS~D--  141 (261)
T PTZ00137         69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFV-CPSELLGFSERLKEFEER----GVKVLGVSVD--  141 (261)
T ss_pred             cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEECC--
Confidence            3456679999987 4564  6899998 8999888877 899997 999999999999999876    8999999998  


Q ss_pred             CCcHHHHHHHHHH-------hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        133 RDTPELVGKYVKE-------FSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       133 ~d~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                        +++..++|.+.       .+.+|+.+.+..   .+++++||+..
T Consensus       142 --s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~---~~iakayGv~~  182 (261)
T PTZ00137        142 --SPFSHKAWKELDVRQGGVSPLKFPLFSDIS---REVSKSFGLLR  182 (261)
T ss_pred             --CHHHHHHHHhhhhhhccccCcceEEEEcCC---hHHHHHcCCCC
Confidence              45566666653       467899998864   45999999863

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.66  E-value=5.1e-16  Score=142.62  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=86.7

Q ss_pred             CCcccCCCeEEEc--CCCCeeec-CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe---CC
Q psy17592         58 GKVAIGGKFELVD--CNNKPVKS-EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV---DP  131 (183)
Q Consensus        58 ~~~~~~p~f~l~d--~~G~~v~l-~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~---dp  131 (183)
                      ..+..+|+|+..+  .+|+++++ ++++||+|||+|||+||++ |+.++|.|++++++++++    ++.||+|+.   |.
T Consensus       392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~p-C~~e~P~L~~l~~~y~~~----~~~vvgV~~~~~D~  466 (1057)
T PLN02919        392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCIN-CMHVLPDLEFLEKKYKDQ----PFTVVGVHSAKFDN  466 (1057)
T ss_pred             ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChh-HHhHhHHHHHHHHHcCCC----CeEEEEEecccccc
Confidence            3456679999876  68999997 5899999999999999998 999999999999999765    799999974   43


Q ss_pred             CCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        132 ERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      + ++.+.+++|+++++..|+.+.+...   .+++.||+.
T Consensus       467 ~-~~~~~~~~~~~~~~i~~pvv~D~~~---~~~~~~~V~  501 (1057)
T PLN02919        467 E-KDLEAIRNAVLRYNISHPVVNDGDM---YLWRELGVS  501 (1057)
T ss_pred             c-ccHHHHHHHHHHhCCCccEEECCch---HHHHhcCCC
Confidence            2 3578899999999999998876544   377788764

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.65  E-value=9.2e-16  Score=112.40  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             cccCCCeEEEcCC---CCeeecCc-cCCCEE-EEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCe-eEEEEEeCCC
Q psy17592         60 VAIGGKFELVDCN---NKPVKSED-FLGKWA-LIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNI-TPIFISVDPE  132 (183)
Q Consensus        60 ~~~~p~f~l~d~~---G~~v~l~~-~~gk~v-ll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v-~~v~Is~dp~  132 (183)
                      +..+|+|++.+.+   |+.++|++ ++||++ |++|+..|||. |..| ++.+++.++++.+.    ++ .+++||.|  
T Consensus         2 G~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~-Ct~e~~~~~~~~~~~f~~~----g~~~V~~iS~D--   74 (155)
T cd03013           2 GDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPT-CSAQHLPGYVENADELKAK----GVDEVICVSVN--   74 (155)
T ss_pred             CCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCC-CchhHHHHHHHhHHHHHHC----CCCEEEEEECC--
Confidence            3456999999985   99999999 588765 55567999996 9999 99999999999866    77 69999987  


Q ss_pred             CCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        133 RDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       133 ~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                        +++..++|.++++.  +|+.|++...   +++++||+..++.
T Consensus        75 --~~~~~~~~~~~~~~~~~f~lLsD~~~---~~~~~ygv~~~~~  113 (155)
T cd03013          75 --DPFVMKAWGKALGAKDKIRFLADGNG---EFTKALGLTLDLS  113 (155)
T ss_pred             --CHHHHHHHHHhhCCCCcEEEEECCCH---HHHHHcCCCcccc
Confidence              78899999999997  8999988654   4999999987654

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK13189 peroxiredoxin; Provisional

Probab=99.64  E-value=1.4e-15  Score=117.58  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             CcccCCCeEEEcCCCCeeecCc-cCCCEEE-EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSED-FLGKWAL-IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~-~~gk~vl-l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      .+..+|+|++.+.+|+ +++++ ++|||++ ++||++|||. |..|++.|+++++++++.    ++++++||+|.    .
T Consensus        11 vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpv-C~tEl~~l~~~~~ef~~~----~v~VigvS~D~----~   80 (222)
T PRK13189         11 IGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPV-CTTEFVAFQKRYDEFREL----NTELIGLSIDQ----V   80 (222)
T ss_pred             CCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCC-CHHHHHHHHHHHHHHHHc----CCEEEEEECCC----H
Confidence            4566799999999996 67766 5999765 5789999996 999999999999999866    89999999983    4


Q ss_pred             HHHHHHHHH----h--CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        137 ELVGKYVKE----F--SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       137 ~~~~~~~~~----~--~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      ....+|.+.    .  +.+|+.+.+...   .++++||+..
T Consensus        81 ~~h~aw~~~~~~~~g~~i~fPllsD~~~---~ia~~ygv~~  118 (222)
T PRK13189         81 FSHIKWVEWIKEKLGVEIEFPIIADDRG---EIAKKLGMIS  118 (222)
T ss_pred             HHHHHHHHhHHHhcCcCcceeEEEcCcc---HHHHHhCCCc
Confidence            444444443    2  368888887654   4899999864

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.64  E-value=1.5e-15  Score=113.50  Aligned_cols=89  Identities=13%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeE------EEEEeCCCC-CcHHHHHHHHH
Q psy17592         72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP------IFISVDPER-DTPELVGKYVK  144 (183)
Q Consensus        72 ~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~------v~Is~dp~~-d~~~~~~~~~~  144 (183)
                      +.+.+++++++||+.||||||+||++ |+.|+|.|.++.++        ++.+      ++|+.|... ++...++.|++
T Consensus        48 ~y~~~~~~~l~GKV~lvn~~Aswc~~-c~~e~P~l~~l~~~--------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie  118 (184)
T TIGR01626        48 VYQPWGSAELAGKVRVVHHIAGRTSA-KEXNASLIDAIKAA--------KFPPVKYQTTTIINADDAIVGTGMFVKSSAK  118 (184)
T ss_pred             cceeccHHHcCCCEEEEEEEecCCCh-hhccchHHHHHHHc--------CCCcccccceEEEECccchhhHHHHHHHHHH
Confidence            44577888999999999999999998 99999999999542        6778      999988311 13345666677


Q ss_pred             HhCCCeE---EecCCHHHHHHHHhhcCeeEe
Q psy17592        145 EFSPKFI---GLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       145 ~~~~~~~---~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      +.+..++   .+.++...   +++.||++-.
T Consensus       119 ~~~~~~P~~~vllD~~g~---v~~~~gv~~~  146 (184)
T TIGR01626       119 KGKKENPWSQVVLDDKGA---VKNAWQLNSE  146 (184)
T ss_pred             HhcccCCcceEEECCcch---HHHhcCCCCC
Confidence            7776666   66665433   6778887644

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG2501|consensus

Probab=99.63  E-value=1.8e-15  Score=108.98  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=91.2

Q ss_pred             CeEEEcCCCCeeecC-ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         65 KFELVDCNNKPVKSE-DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        65 ~f~l~d~~G~~v~l~-~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      ...|...+|..+..+ .++||+|.++|.|.|||+ |+...|.|.++++++++.  ...++||+||.|   .+.+.+..|.
T Consensus        14 g~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~p-CR~FTP~Lk~fYe~l~~~--~~~fEVvfVS~D---~~~~~~~~y~   87 (157)
T KOG2501|consen   14 GNRLRKQDGTEVLASEALQGKVVGLYFSAHWCPP-CRDFTPILKDFYEELKDN--AAPFEVVFVSSD---RDEESLDEYM   87 (157)
T ss_pred             CCeeeccCCccchHhHhhCCcEEEEEEEEEECCc-hhhCCchHHHHHHHHHhc--CCceEEEEEecC---CCHHHHHHHH
Confidence            367888888877766 689999999999999999 999999999999999887  557999999999   5789999999


Q ss_pred             HHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        144 KEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       144 ~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      ++++.+|..+.-..+.++.+.+.|+|.-.+
T Consensus        88 ~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP  117 (157)
T KOG2501|consen   88 LEHHGDWLAIPFGDDLIQKLSEKYEVKGIP  117 (157)
T ss_pred             HhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence            999999999988888889999999876443

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.55  E-value=3.7e-14  Score=105.58  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=49.2

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .++|++.  +|+.+++++++    ||+||++|||+ |+.++|.|+++++++       ++.+++|++|.
T Consensus        55 ~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~-C~~e~P~L~~l~~~~-------g~~Vi~Vs~D~  109 (181)
T PRK13728         55 PRWFRLS--NGRQVNLADWK----VVLFMQGHCPY-CHQFDPVLKQLAQQY-------GFSVFPYTLDG  109 (181)
T ss_pred             CCccCCC--CCCEeehhHce----EEEEECCCCHh-HHHHHHHHHHHHHHc-------CCEEEEEEeCC
Confidence            3677774  89999999997    78899999998 999999999999986       58999999984

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=8.1e-13  Score=98.17  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=88.6

Q ss_pred             cccCCCeEEEcC-CCC---eeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         60 VAIGGKFELVDC-NNK---PVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d~-~G~---~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+|+|+.+.. .|.   .++++++.|||++|+||...-.++|+.|+..+++.+.++++.    ++++++||+|    +
T Consensus         6 g~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~----g~eVigvS~D----s   77 (194)
T COG0450           6 GKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR----GVEVIGVSTD----S   77 (194)
T ss_pred             CCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc----CCEEEEEecC----c
Confidence            345599999988 774   899999999999999999999999999999999999999987    8999999998    5


Q ss_pred             HHHHHHHHHH----hC---CCeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592        136 PELVGKYVKE----FS---PKFIGLTGTVEQVAAACKAYRVYFSAGPK  176 (183)
Q Consensus       136 ~~~~~~~~~~----~~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~  176 (183)
                      .....+|.+.    .+   .+|+.+.+...+   +++.||+.......
T Consensus        78 ~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~---vs~~ygvl~~~~g~  122 (194)
T COG0450          78 VFSHKAWKATIREAGGIGKIKFPMIADPKGE---IARAYGVLHPEEGL  122 (194)
T ss_pred             HHHHHHHHhcHHhcCCccceecceEEcCchh---HHHHcCCcccCCCc
Confidence            5666666665    34   689999877665   99999998655443

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.38  E-value=1.7e-12  Score=94.80  Aligned_cols=48  Identities=17%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        72 ~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .|+.++++    ++.||+||++|||+ |+.|+|.|+++++++       ++.+++|++|.
T Consensus        43 ~G~~~~l~----~~~lvnFWAsWCpp-Cr~e~P~L~~l~~~~-------~~~Vi~Vs~d~   90 (153)
T TIGR02738        43 QGRHANQD----DYALVFFYQSTCPY-CHQFAPVLKRFSQQF-------GLPVYAFSLDG   90 (153)
T ss_pred             cchhhhcC----CCEEEEEECCCChh-HHHHHHHHHHHHHHc-------CCcEEEEEeCC
Confidence            36666654    44599999999998 999999999999876       47899999984

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0855|consensus

Probab=99.26  E-value=1.6e-11  Score=88.78  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=89.0

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      .+..+++.|||+|.|.||+.++|.++.| |+|+++|+.....|.|..+...++.-|+++++.    +.+++++|.|    
T Consensus        62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka----~aeV~GlS~D----  133 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA----GAEVIGLSGD----  133 (211)
T ss_pred             eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc----CceEEeeccC----
Confidence            4556677799999999999999999987 488888886666667999999999999999875    7899999988    


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +....++|..+++.+|+.|.++..+   +.+.+|+.
T Consensus       134 ~s~sqKaF~sKqnlPYhLLSDpk~e---~ik~lGa~  166 (211)
T KOG0855|consen  134 DSASQKAFASKQNLPYHLLSDPKNE---VIKDLGAP  166 (211)
T ss_pred             chHHHHHhhhhccCCeeeecCcchh---HHHHhCCC
Confidence            6678899999999999999887766   67777765

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.20  E-value=1.2e-10  Score=79.42  Aligned_cols=56  Identities=9%  Similarity=0.177  Sum_probs=45.5

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .+||++||+||++||++ |+.++|.|+++++++  .    ++.++.|+.|.   + +...+++++++
T Consensus        13 ~~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~--~----~v~~~~vd~d~---~-~~~~~l~~~~~   68 (103)
T cd02985          13 AKGRLVVLEFALKHSGP-SVKIYPTMVKLSRTC--N----DVVFLLVNGDE---N-DSTMELCRREK   68 (103)
T ss_pred             cCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHC--C----CCEEEEEECCC---C-hHHHHHHHHcC
Confidence            46899999999999998 999999999999987  2    68888888873   2 23456666666

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.09  E-value=2.1e-10  Score=77.90  Aligned_cols=45  Identities=13%  Similarity=0.138  Sum_probs=38.1

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++||+++|+||++||++ |+.++|.+.+++++++      ++.++.|..|
T Consensus        14 ~~~~g~~vlV~F~a~WC~~-C~~~~p~l~~la~~~~------~~~~~~vd~~   58 (100)
T cd02999          14 AFNREDYTAVLFYASWCPF-SASFRPHFNALSSMFP------QIRHLAIEES   58 (100)
T ss_pred             HhcCCCEEEEEEECCCCHH-HHhHhHHHHHHHHHhc------cCceEEEECC
Confidence            3578999999999999998 9999999999999874      4667776543

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.09  E-value=9.2e-11  Score=84.69  Aligned_cols=58  Identities=21%  Similarity=0.280  Sum_probs=46.3

Q ss_pred             EEcCCCCeeecCc--cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         68 LVDCNNKPVKSED--FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        68 l~d~~G~~v~l~~--~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +++.+++...+++  .+||++||+||++||++ |+.++|.+.++++++.+     ++.|+.|++|.
T Consensus         3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~-C~~~~p~l~~l~~~~~~-----~~~~v~v~vd~   62 (142)
T cd02950           3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTV-CQEMAPDVAKLKQKYGD-----QVNFVMLNVDN   62 (142)
T ss_pred             hHHHhhccCCHHHHHhCCCEEEEEEECCcCHH-HHHhHHHHHHHHHHhcc-----CeeEEEEEcCC
Confidence            4445555555444  37899999999999998 99999999999998753     58899999883

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.04  E-value=7.5e-10  Score=75.34  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL  153 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l  153 (183)
                      .|++++|+||++||++ |+..+|.+.++++++++.    .+.++.++.|    .++.+++|.-+.-|.+.++
T Consensus        16 ~~~~vvv~F~a~wC~~-Ck~~~p~l~~~~~~~~~~----~~~~~~vd~d----~~~~~~~~~v~~~Pt~~~~   78 (102)
T cd02948          16 NKGLTVVDVYQEWCGP-CKAVVSLFKKIKNELGDD----LLHFATAEAD----TIDTLKRYRGKCEPTFLFY   78 (102)
T ss_pred             cCCeEEEEEECCcCHh-HHHHhHHHHHHHHHcCCC----cEEEEEEeCC----CHHHHHHcCCCcCcEEEEE
Confidence            5899999999999998 999999999999987643    5777888776    3444444433333444443

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=9.9e-09  Score=73.30  Aligned_cols=108  Identities=22%  Similarity=0.255  Sum_probs=90.3

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .+..++.+|+|++.+.+.+.++++++.||..+|+...+--.++|..+...+.+...++.      ++.++.||.|    .
T Consensus        17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~------~~~Vl~IS~D----L   86 (158)
T COG2077          17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG------NTVVLCISMD----L   86 (158)
T ss_pred             CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC------CcEEEEEeCC----C
Confidence            34566677999999999999999999999999998888888899999999999888754      6899999987    8


Q ss_pred             HHHHHHHHHHhCCC-eEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        136 PELVGKYVKEFSPK-FIGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                      |-..++|+..+|.+ ...+++-  ....+.++||+.+.+.+
T Consensus        87 PFAq~RfC~aeGi~nv~~lSd~--r~~~Fge~yGv~I~egp  125 (158)
T COG2077          87 PFAQKRFCGAEGIENVITLSDF--RDRAFGENYGVLINEGP  125 (158)
T ss_pred             hhHHhhhhhhcCcccceEhhhh--hhhhhhHhhCEEecccc
Confidence            89999999999965 5555432  33458999999988764

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.98  E-value=2.5e-09  Score=77.94  Aligned_cols=53  Identities=21%  Similarity=0.219  Sum_probs=43.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      ++++++|+||++||++ |+...|.+.++.+++...    +++++.|++|   +.++..++|
T Consensus        46 ~~~~vvV~Fya~wC~~-Ck~l~p~l~~la~~~~~~----~v~f~~VDvd---~~~~la~~~   98 (152)
T cd02962          46 KRVTWLVEFFTTWSPE-CVNFAPVFAELSLKYNNN----NLKFGKIDIG---RFPNVAEKF   98 (152)
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcccC----CeEEEEEECC---CCHHHHHHc
Confidence            4679999999999998 999999999999987643    6999999988   344444444

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR02740 TraF-like TraF-like protein

Probab=98.95  E-value=5.7e-10  Score=88.75  Aligned_cols=50  Identities=26%  Similarity=0.402  Sum_probs=45.1

Q ss_pred             CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         74 KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        74 ~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +...+++++|+++||+||++||++ |+.++|.|+++++++       ++.|+.|++|.
T Consensus       157 ~~~~l~~l~~k~~Lv~F~AswCp~-C~~~~P~L~~la~~y-------g~~Vi~VsvD~  206 (271)
T TIGR02740       157 KDRVMKDLAKKSGLFFFFKSDCPY-CHQQAPILQAFEDRY-------GIEVLPVSVDG  206 (271)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCcc-HHHHhHHHHHHHHHc-------CcEEEEEeCCC
Confidence            346788899999999999999998 999999999999986       58899999984

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.94  E-value=3e-09  Score=73.68  Aligned_cols=43  Identities=21%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||+|||+||++ |+...|.|.++..++.+     .+.++-|++|
T Consensus        13 ~~~~vVV~F~A~WCgp-Ck~m~P~le~la~~~~~-----~v~f~kVDvD   55 (114)
T cd02954          13 EEKVVVIRFGRDWDPV-CMQMDEVLAKIAEDVSN-----FAVIYLVDID   55 (114)
T ss_pred             CCCEEEEEEECCCChh-HHHHHHHHHHHHHHccC-----ceEEEEEECC
Confidence            4689999999999999 99999999999998753     4788999888

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.93  E-value=2e-08  Score=68.91  Aligned_cols=83  Identities=20%  Similarity=0.342  Sum_probs=69.3

Q ss_pred             CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHHHH
Q psy17592         65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPELVG  140 (183)
Q Consensus        65 ~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~~~  140 (183)
                      +|++.|.+|+.+++++++||++||.=.||.|+. =. ....|++|+++++++    +++|+++-.+-    +.++.++++
T Consensus         3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~-t~-qy~~L~~L~~ky~~~----gl~ILaFPcnqFg~QEp~~~~ei~   76 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGY-TK-QYKQLNELYEKYKDK----GLEILAFPCNQFGNQEPGSNEEIK   76 (108)
T ss_dssp             GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTT-HH-HHHHHHHHHHHHGGG----TEEEEEEEBSTTTTTTSSCHHHHH
T ss_pred             ceeeeCCCCCEECHHHcCCCEEEEEecccccCC-cc-ccHHHHHHHHHHhcC----CeEEEeeehHHhccccCCCHHHHH
Confidence            689999999999999999999988888999996 55 899999999999876    89999996652    225678888


Q ss_pred             HHHHH-hCCCeEEe
Q psy17592        141 KYVKE-FSPKFIGL  153 (183)
Q Consensus       141 ~~~~~-~~~~~~~l  153 (183)
                      +|+.. ++..|+..
T Consensus        77 ~~~~~~~~~~F~vf   90 (108)
T PF00255_consen   77 EFCKEKFGVTFPVF   90 (108)
T ss_dssp             HHHCHCHT-SSEEB
T ss_pred             HHHHhccCCcccce
Confidence            88888 67777663

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>KOG0910|consensus

Probab=98.90  E-value=2.5e-09  Score=76.63  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE  145 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~  145 (183)
                      .++||||.|||+||.| |+...|.|+++..++..     .+.+.-|++|   +.++...+|--.
T Consensus        60 S~~PVlVdF~A~WCgP-Ck~l~P~l~~~~~~~~g-----~~k~~kvdtD---~~~ela~~Y~I~  114 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGP-CKMLGPILEELVSEYAG-----KFKLYKVDTD---EHPELAEDYEIS  114 (150)
T ss_pred             cCCCEEEEEecCcCcc-HhHhhHHHHHHHHhhcC-----eEEEEEEccc---cccchHhhccee
Confidence            4689999999999999 99999999999999854     5999999998   455655555443

>KOG0852|consensus

Probab=98.89  E-value=6.2e-09  Score=76.02  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             CCeEEE---cCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         64 GKFELV---DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        64 p~f~l~---d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      |+|.-+   |-.-+.++|++++||+|++.|+.-.-..+|+.|+-.+...+.++++.    +-+++++|+|    +.....
T Consensus        11 p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~----n~eVig~S~D----S~fshl   82 (196)
T KOG0852|consen   11 PDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL----NTEVLGISTD----SVFSHL   82 (196)
T ss_pred             CCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc----CCeEEEEecc----chhhhh
Confidence            677644   33446789999999999999998888889999999999999999977    8999999998    445555


Q ss_pred             HHHHH---h-C---CCeEEecCCHHHHHHHHhhcCeeEeeCCCCCCCCCC
Q psy17592        141 KYVKE---F-S---PKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI  183 (183)
Q Consensus       141 ~~~~~---~-~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~  183 (183)
                      +|...   . |   .+++.+.+...+   +++.||+..+..+.+=++.||
T Consensus        83 AW~ntprk~gGlg~~~iPllsD~~~~---IsrdyGvL~~~~G~~lRglfI  129 (196)
T KOG0852|consen   83 AWINTPRKQGGLGPLNIPLLSDLNHE---ISRDYGVLKEDEGIALRGLFI  129 (196)
T ss_pred             hHhcCchhhCCcCccccceeeccchh---hHHhcCceecCCCcceeeeEE
Confidence            55432   2 2   568888776555   999999998887765555543

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.88  E-value=3e-09  Score=73.50  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=39.7

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|++++|+||++||++ |+...|.+.++.+++++.    ++.+..|+.|
T Consensus        22 ~~~~~vlV~F~a~wC~~-C~~~~p~~~~l~~~~~~~----~v~~~~vd~d   66 (111)
T cd02963          22 SFKKPYLIKITSDWCFS-CIHIEPVWKEVIQELEPL----GVGIATVNAG   66 (111)
T ss_pred             cCCCeEEEEEECCccHh-HHHhhHHHHHHHHHHHhc----CceEEEEecc
Confidence            46899999999999998 999999999999998743    5888888777

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.83  E-value=7.6e-09  Score=70.02  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=38.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.+.++.++++.     .+.+..|+.|
T Consensus        17 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~~-----~~~~~~vd~~   59 (101)
T cd03003          17 SGEIWFVNFYSPRCSH-CHDLAPTWREFAKEMDG-----VIRIGAVNCG   59 (101)
T ss_pred             CCCeEEEEEECCCChH-HHHhHHHHHHHHHHhcC-----ceEEEEEeCC
Confidence            5689999999999998 99999999999998853     5888888888

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.83  E-value=1.4e-08  Score=67.93  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|++++|+||++||++ |+...|.+.++.+.+.+     .+.++.|+.|
T Consensus        11 ~~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~~   53 (96)
T cd02956          11 TQVPVVVDFWAPRSPP-SKELLPLLERLAEEYQG-----QFVLAKVNCD   53 (96)
T ss_pred             CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhCC-----cEEEEEEecc
Confidence            5789999999999998 99999999999998753     4777888777

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>KOG0907|consensus

Probab=98.82  E-value=1.3e-08  Score=69.70  Aligned_cols=58  Identities=24%  Similarity=0.410  Sum_probs=47.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC----CCeEEe
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS----PKFIGL  153 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~----~~~~~l  153 (183)
                      .+|.++|+|.++||+| |+...|.+.+|..+|.      ++.|+-|++|   +    ....+++++    |.|.++
T Consensus        20 ~~kliVvdF~a~wCgP-Ck~i~P~~~~La~~y~------~v~Flkvdvd---e----~~~~~~~~~V~~~PTf~f~   81 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGP-CKAIAPKFEKLAEKYP------DVVFLKVDVD---E----LEEVAKEFNVKAMPTFVFY   81 (106)
T ss_pred             CCCeEEEEEECCCCcc-hhhhhhHHHHHHHHCC------CCEEEEEecc---c----CHhHHHhcCceEeeEEEEE
Confidence            3699999999999999 9999999999999975      5899999998   2    666677776    455554

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.78  E-value=2.4e-08  Score=68.90  Aligned_cols=43  Identities=14%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+|+|.|+++||++ |+..-|.|.++.+++.+     .+.|+-|.+|
T Consensus        13 ~~klVVVdF~a~WC~p-Ck~mdp~l~ela~~~~~-----~~~f~kVDVD   55 (114)
T cd02986          13 AEKVLVLRFGRDEDAV-CLQLDDILSKTSHDLSK-----MASIYLVDVD   55 (114)
T ss_pred             CCCEEEEEEeCCCChh-HHHHHHHHHHHHHHccC-----ceEEEEEecc
Confidence            5899999999999999 99999999999999852     2788888887

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.4e-08  Score=71.61  Aligned_cols=83  Identities=20%  Similarity=0.311  Sum_probs=68.4

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPELV  139 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~~  139 (183)
                      -+|++++.+|++++|++++||++||.=.||.|+-  ..+-..|+.|+++|+++    ++.|++.-.+-    +..+.+++
T Consensus         6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGf--TpQYegLe~Ly~ky~~~----Gf~VLgFPcNQF~~QEPg~~eEI   79 (162)
T COG0386           6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGF--TPQYEGLEALYKKYKDK----GFEVLGFPCNQFGGQEPGSDEEI   79 (162)
T ss_pred             ccceeeccCCCCccHHHhCCcEEEEEEcccccCC--cHhHHHHHHHHHHHhhC----CcEEEeccccccccCCCCCHHHH
Confidence            4899999999999999999999988888999996  44788999999999987    89999996651    12466788


Q ss_pred             HHHHHH-hCCCeEE
Q psy17592        140 GKYVKE-FSPKFIG  152 (183)
Q Consensus       140 ~~~~~~-~~~~~~~  152 (183)
                      ++|.+. +|..|++
T Consensus        80 ~~fC~~~YgVtFp~   93 (162)
T COG0386          80 AKFCQLNYGVTFPM   93 (162)
T ss_pred             HHHHHhccCceeee
Confidence            888775 4666665

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.76  E-value=2.1e-08  Score=68.33  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=38.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |+..+|.+.+++++++..  ..++.+..+..+
T Consensus        14 ~~~~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~~~~vd~~   59 (104)
T cd03000          14 KEDIWLVDFYAPWCGH-CKKLEPVWNEVGAELKSS--GSPVRVGKLDAT   59 (104)
T ss_pred             cCCeEEEEEECCCCHH-HHhhChHHHHHHHHHHhc--CCcEEEEEEECc
Confidence            4679999999999998 999999999999998654  234777777665

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.76  E-value=2.8e-08  Score=71.42  Aligned_cols=51  Identities=18%  Similarity=0.295  Sum_probs=41.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .+++|||.|||+||++ |+...|.|.++.+++.+     .+.|+-|.+|   +.++....
T Consensus        22 ~~~lVVvdF~A~WCgp-Ck~m~p~l~~la~~~~~-----~~~~~kVDVD---e~~dla~~   72 (142)
T PLN00410         22 EERLVVIRFGHDWDET-CMQMDEVLASVAETIKN-----FAVIYLVDIT---EVPDFNTM   72 (142)
T ss_pred             CCCEEEEEEECCCChh-HHHHHHHHHHHHHHcCC-----ceEEEEEECC---CCHHHHHH
Confidence            4689999999999999 99999999999998753     4788889988   44444333

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.75  E-value=8.7e-09  Score=71.96  Aligned_cols=81  Identities=11%  Similarity=0.123  Sum_probs=50.0

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC---CCeEEecC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS---PKFIGLTG  155 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~---~~~~~l~~  155 (183)
                      +..+||++||+||++||++ |+...|.+.+.......     ...++.|.+|...+  ...+.| ...+   |.+.++..
T Consensus        15 A~~~~kpVlV~F~a~WC~~-C~~~~~~~~~~~~~~~~-----~~~fv~v~vd~~~~--~~~~~~-~~~g~~vPt~~f~~~   85 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGA-CKALKPKFAESKEISEL-----SHNFVMVNLEDDEE--PKDEEF-SPDGGYIPRILFLDP   85 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHH-HHHHHHHHhhhHHHHhh-----cCcEEEEEecCCCC--chhhhc-ccCCCccceEEEECC
Confidence            3346899999999999998 99999999997665432     34567777774222  122233 2222   33444444


Q ss_pred             CHHHHHHHHhhcC
Q psy17592        156 TVEQVAAACKAYR  168 (183)
Q Consensus       156 ~~~~~~~~~~~~g  168 (183)
                      +.+.+.++...+|
T Consensus        86 ~Gk~~~~~~~~~~   98 (117)
T cd02959          86 SGDVHPEIINKKG   98 (117)
T ss_pred             CCCCchhhccCCC
Confidence            5445444544444

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PHA02278 thioredoxin-like protein

Probab=98.74  E-value=2.9e-08  Score=67.72  Aligned_cols=44  Identities=11%  Similarity=0.120  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +++++||+|||+||++ |+...|.+.++.+++..     ++.++.|++|.
T Consensus        13 ~~~~vvV~F~A~WCgp-Ck~m~p~l~~l~~~~~~-----~~~~~~vdvd~   56 (103)
T PHA02278         13 QKKDVIVMITQDNCGK-CEILKSVIPMFQESGDI-----KKPILTLNLDA   56 (103)
T ss_pred             CCCcEEEEEECCCCHH-HHhHHHHHHHHHhhhcC-----CceEEEEECCc
Confidence            5789999999999999 99999999999876432     46788888884

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.74  E-value=2.4e-08  Score=67.43  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++|+ ++|+||++||++ |+...|.+.++++.++..    ++.+..|..|
T Consensus        15 ~~~~-~lv~f~a~wC~~-C~~~~p~~~~l~~~~~~~----~v~~~~vd~~   58 (101)
T cd02994          15 LEGE-WMIEFYAPWCPA-CQQLQPEWEEFADWSDDL----GINVAKVDVT   58 (101)
T ss_pred             hCCC-EEEEEECCCCHH-HHHHhHHHHHHHHhhccC----CeEEEEEEcc
Confidence            3566 579999999998 999999999999876532    6888888776

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.71  E-value=5.6e-08  Score=66.09  Aligned_cols=57  Identities=14%  Similarity=0.230  Sum_probs=42.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .||++||+||++||++ |+...+.+   .++.+.+++     ++.++.|.++.   +.+....++++++
T Consensus        10 ~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~~~vd~~~---~~~~~~~~~~~~~   69 (104)
T cd02953          10 QGKPVFVDFTADWCVT-CKVNEKVVFSDPEVQAALKK-----DVVLLRADWTK---NDPEITALLKRFG   69 (104)
T ss_pred             cCCeEEEEEEcchhHH-HHHHHHHhcCCHHHHHHHhC-----CeEEEEEecCC---CCHHHHHHHHHcC
Confidence            5799999999999998 99999887   567776642     57888887762   2233456666665

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.69  E-value=5.2e-08  Score=67.58  Aligned_cols=43  Identities=9%  Similarity=0.087  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||.||++||++ |+...|.+.++.+++++     .+.+..|+.|
T Consensus        28 ~~~~vlV~FyA~WC~~-Ck~l~p~~~~la~~~~~-----~v~~~~Vd~d   70 (113)
T cd03006          28 DAEVSLVMYYAPWDAQ-SQAARQEFEQVAQKLSD-----QVLFVAINCW   70 (113)
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CeEEEEEECC
Confidence            5689999999999998 99999999999999853     4788888877

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.69  E-value=5.9e-08  Score=66.71  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +||+++|.||++||++ |+...|.+.++.+.+++.    ++.+..|..|.
T Consensus        20 ~~k~vlv~f~a~wC~~-C~~~~~~~~~la~~~~~~----~~~~~~vd~d~   64 (109)
T cd02993          20 RNQSTLVVLYAPWCPF-CQAMEASYEELAEKLAGS----NVKVAKFNADG   64 (109)
T ss_pred             cCCCEEEEEECCCCHH-HHHHhHHHHHHHHHhccC----CeEEEEEECCc
Confidence            5799999999999998 999999999999998743    68888888873

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK09381 trxA thioredoxin; Provisional

Probab=98.68  E-value=4.9e-08  Score=66.88  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=38.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++|||+ |+...|.++++.+++..     ++.+..|+.|
T Consensus        20 ~~~~vvv~f~~~~C~~-C~~~~p~~~~l~~~~~~-----~~~~~~vd~~   62 (109)
T PRK09381         20 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG-----KLTVAKLNID   62 (109)
T ss_pred             CCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhCC-----CcEEEEEECC
Confidence            3789999999999998 99999999999998753     5888889887

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.64  E-value=5.1e-08  Score=65.68  Aligned_cols=43  Identities=12%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++|+||++||++ |+..+|.+.+++++++..  ...+.++.|..|
T Consensus        18 ~~lv~f~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~~~~~~vd~~   60 (102)
T cd03005          18 NHFVKFFAPWCGH-CKRLAPTWEQLAKKFNNE--NPSVKIAKVDCT   60 (102)
T ss_pred             CEEEEEECCCCHH-HHHhCHHHHHHHHHHhcc--CCcEEEEEEECC
Confidence            5999999999998 999999999999998752  236888888776

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.5e-08  Score=78.90  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+-+||||+||++||++ |...+|.|.++..+++.     .+.+.-|++|
T Consensus        41 S~~~PVlV~fWap~~~~-c~qL~p~Lekla~~~~G-----~f~LakvN~D   84 (304)
T COG3118          41 SREVPVLVDFWAPWCGP-CKQLTPTLEKLAAEYKG-----KFKLAKVNCD   84 (304)
T ss_pred             ccCCCeEEEecCCCCch-HHHHHHHHHHHHHHhCC-----ceEEEEecCC
Confidence            35679999999999998 99999999999999864     5888888888

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.62  E-value=8.7e-08  Score=65.45  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=38.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .|++++|+||++||++ |+...|.+.++.+++..     .+.++.|+.|.
T Consensus        17 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~a~~~~~-----~~~~~~v~~~~   60 (109)
T cd03002          17 TNYTTLVEFYAPWCGH-CKNLKPEYAKAAKELDG-----LVQVAAVDCDE   60 (109)
T ss_pred             CCCeEEEEEECCCCHH-HHhhChHHHHHHHHhcC-----CceEEEEecCc
Confidence            4789999999999998 99999999999998753     58888888873

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.62  E-value=1.3e-07  Score=64.24  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.+.++.+++..     .+.+..|+.|
T Consensus        18 ~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~~-----~~~~~~vd~~   60 (104)
T cd03004          18 RKEPWLVDFYAPWCGP-CQALLPELRKAARALKG-----KVKVGSVDCQ   60 (104)
T ss_pred             CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CcEEEEEECC
Confidence            4679999999999998 99999999999998742     5888888877

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.60  E-value=8.9e-08  Score=65.56  Aligned_cols=48  Identities=13%  Similarity=0.049  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCC-CCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP-NVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~-~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.++++++.+++.. ..+.+.+..|..|
T Consensus        17 ~~~~vlv~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d   65 (108)
T cd02996          17 SAELVLVNFYADWCRF-SQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD   65 (108)
T ss_pred             cCCEEEEEEECCCCHH-HHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence            4689999999999998 9999999999998875431 0124777777777

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.58  E-value=2.5e-07  Score=65.05  Aligned_cols=58  Identities=16%  Similarity=0.308  Sum_probs=45.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC----CcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER----DTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~----d~~~~~~~~~~~~~  147 (183)
                      .|+.++|+|+++|||+ |+...|.|.++.++.       ++.+..|++|...    .+.+.+.+|.+.++
T Consensus        22 ~~~~~iv~f~~~~Cp~-C~~~~P~l~~~~~~~-------~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295        22 KKETATFFIGRKTCPY-CRKFSGTLSGVVAQT-------KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             cCCcEEEEEECCCChh-HHHHhHHHHHHHHhc-------CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence            4788999999999998 999999999998872       4678888887321    22346778888775

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.57  E-value=2.7e-07  Score=62.02  Aligned_cols=43  Identities=19%  Similarity=0.420  Sum_probs=37.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++++||++||+. |....|.+.++.+++.+     ++.++.|+.|
T Consensus        12 ~~~~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~~-----~v~~~~id~d   54 (97)
T cd02949          12 SDRLILVLYTSPTCGP-CRTLKPILNKVIDEFDG-----AVHFVEIDID   54 (97)
T ss_pred             CCCeEEEEEECCCChh-HHHHHHHHHHHHHHhCC-----ceEEEEEECC
Confidence            4689999999999997 99999999999988742     5888888876

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.56  E-value=1.1e-07  Score=66.46  Aligned_cols=44  Identities=23%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             CCCEEEEEEEc-------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGF-------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~-------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +|++++|+|||       +|||+ |+...|.|.++..++..     ++.++-|.+|.
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~~~-----~v~fv~Vdvd~   70 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAAPE-----DCVFIYCDVGD   70 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHCCC-----CCEEEEEEcCC
Confidence            58999999999       99998 99999999999998752     58899999873

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00051 thioredoxin; Provisional

Probab=98.55  E-value=2.1e-07  Score=62.35  Aligned_cols=42  Identities=12%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...+.+.++.+++.      ++.++.|+.|
T Consensus        17 ~~~~vli~f~~~~C~~-C~~~~~~l~~l~~~~~------~~~~~~vd~~   58 (98)
T PTZ00051         17 QNELVIVDFYAEWCGP-CKRIAPFYEECSKEYT------KMVFVKVDVD   58 (98)
T ss_pred             cCCeEEEEEECCCCHH-HHHHhHHHHHHHHHcC------CcEEEEEECc
Confidence            4789999999999998 9999999999998642      5777777766

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.55  E-value=3.1e-07  Score=63.78  Aligned_cols=45  Identities=11%  Similarity=0.124  Sum_probs=36.9

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++|+||++||++ |+...|.++++.+++++.  .+.+.+..|+.+
T Consensus        19 ~~~vvV~f~a~wC~~-C~~~~~~~~~la~~~~~~--~~~v~~~~vd~~   63 (114)
T cd02992          19 PSAWLVEFYASWCGH-CRAFAPTWKKLARDLRKW--RPVVRVAAVDCA   63 (114)
T ss_pred             CCeEEEEEECCCCHH-HHHHhHHHHHHHHHHHhc--CCceEEEEEecc
Confidence            479999999999998 999999999999988653  234777666654

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK10996 thioredoxin 2; Provisional

Probab=98.54  E-value=2.6e-07  Score=66.37  Aligned_cols=43  Identities=14%  Similarity=0.182  Sum_probs=37.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++||++ |+...|.+.++++++..     ++.++.|..|
T Consensus        51 ~~k~vvv~F~a~wC~~-C~~~~~~l~~l~~~~~~-----~v~~~~vd~~   93 (139)
T PRK10996         51 DDLPVVIDFWAPWCGP-CRNFAPIFEDVAAERSG-----KVRFVKVNTE   93 (139)
T ss_pred             CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhCC-----CeEEEEEeCC
Confidence            4799999999999998 99999999999987643     5788788776

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.53  E-value=2.3e-07  Score=65.22  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=35.4

Q ss_pred             CC-CEEEEEEEcCCCCCCcHHHHHHHH---HHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LG-KWALIYFGFTHCPDICPDELEKMA---AVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~g-k~vll~f~~t~C~~~C~~~~~~l~---~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .| |+++|+||++||++ |+...+.+.   ++.+.+.+     ++.++.|++|.
T Consensus        12 ~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~d~   59 (125)
T cd02951          12 DGKKPLLLLFSQPGCPY-CDKLKRDYLNDPAVQAYIRA-----HFVVVYINIDG   59 (125)
T ss_pred             cCCCcEEEEEeCCCCHH-HHHHHHHhcCcHHHHHHHHh-----heEEEEEEccC
Confidence            57 99999999999998 999999885   55555542     58888888873

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.51  E-value=2.6e-07  Score=62.39  Aligned_cols=45  Identities=11%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |+...|.++++.+.+.+.   ..+.++.|..+
T Consensus        16 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~---~~~~~~~id~~   60 (104)
T cd02997          16 KEKHVLVMFYAPWCGH-CKKMKPEFTKAATELKED---GKGVLAAVDCT   60 (104)
T ss_pred             hCCCEEEEEECCCCHH-HHHhCHHHHHHHHHHhhC---CceEEEEEECC
Confidence            5679999999999998 999999999999988643   25666666665

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.50  E-value=4.1e-07  Score=60.75  Aligned_cols=42  Identities=12%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++|+||++||++ |+...+.|.++.+++.     .++.++.|..+
T Consensus        14 ~~~v~v~f~~~~C~~-C~~~~~~l~~l~~~~~-----~~i~~~~vd~~   55 (97)
T cd02984          14 SKLLVLHFWAPWAEP-CKQMNQVFEELAKEAF-----PSVLFLSIEAE   55 (97)
T ss_pred             CCEEEEEEECCCCHH-HHHHhHHHHHHHHHhC-----CceEEEEEccc
Confidence            699999999999998 9999999999998862     26777777655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.49  E-value=2e-07  Score=62.90  Aligned_cols=44  Identities=18%  Similarity=0.275  Sum_probs=37.7

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++|+||++||++ |+...|.+.++.+.+++.   .++.+..|+.+
T Consensus        18 ~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~---~~~~~~~id~~   61 (104)
T cd02995          18 DKDVLVEFYAPWCGH-CKALAPIYEELAEKLKGD---DNVVIAKMDAT   61 (104)
T ss_pred             CCcEEEEEECCCCHH-HHHHhhHHHHHHHHhcCC---CCEEEEEEeCc
Confidence            589999999999998 999999999999988652   25777777766

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.48  E-value=6.5e-07  Score=61.92  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++|+||++||++ |+...|.++++.+++.      ++.++-|..|
T Consensus        24 ~~~vvv~F~a~~c~~-C~~l~~~l~~la~~~~------~v~f~~vd~~   64 (113)
T cd02957          24 GTRVVVHFYEPGFPR-CKILDSHLEELAAKYP------ETKFVKINAE   64 (113)
T ss_pred             CCEEEEEEeCCCCCc-HHHHHHHHHHHHHHCC------CcEEEEEEch
Confidence            589999999999998 9999999999998863      5777777665

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.46  E-value=9.3e-07  Score=61.27  Aligned_cols=42  Identities=10%  Similarity=0.032  Sum_probs=36.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.|.++.+++.      ++.++-|..|
T Consensus        21 ~~~~vvV~f~a~~c~~-C~~~~p~l~~la~~~~------~i~f~~Vd~~   62 (113)
T cd02989          21 SSERVVCHFYHPEFFR-CKIMDKHLEILAKKHL------ETKFIKVNAE   62 (113)
T ss_pred             CCCcEEEEEECCCCcc-HHHHHHHHHHHHHHcC------CCEEEEEEcc
Confidence            4689999999999998 9999999999998763      5788888877

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.45  E-value=2.8e-07  Score=61.83  Aligned_cols=45  Identities=18%  Similarity=0.343  Sum_probs=37.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||+. |+...+.++++.+.++..   +++.+..+..|
T Consensus        12 ~~~~~~i~f~~~~C~~-c~~~~~~~~~~~~~~~~~---~~~~~~~~d~~   56 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGH-CKNLAPEYEKLAKELKGD---PDIVLAKVDAT   56 (102)
T ss_pred             cCCcEEEEEECCCCHH-HHhhChHHHHHHHHhccC---CceEEEEEEcc
Confidence            6899999999999998 999999999999888643   24777777665

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.41  E-value=6.3e-07  Score=60.42  Aligned_cols=45  Identities=13%  Similarity=0.194  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|.||++||++ |+...|.+.++.++++..   +++.++.|..+
T Consensus        17 ~~~~~~v~f~a~~C~~-C~~~~~~~~~~~~~~~~~---~~~~~~~id~~   61 (105)
T cd02998          17 DKKDVLVEFYAPWCGH-CKNLAPEYEKLAAVFANE---DDVVIAKVDAD   61 (105)
T ss_pred             CCCcEEEEEECCCCHH-HHhhChHHHHHHHHhCCC---CCEEEEEEECC
Confidence            3579999999999998 999999999999998632   36777777766

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.36  E-value=1.1e-06  Score=59.12  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=36.4

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++|.||++||++ |+...|.+.++.+++..     .+.+..+..|
T Consensus        18 ~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~id~~   59 (103)
T cd03001          18 DDVWLVEFYAPWCGH-CKNLAPEWKKAAKALKG-----IVKVGAVDAD   59 (103)
T ss_pred             CCcEEEEEECCCCHH-HHHHhHHHHHHHHHhcC-----CceEEEEECc
Confidence            567999999999998 99999999999988753     5788888776

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>KOG0854|consensus

Probab=98.35  E-value=2.2e-06  Score=62.97  Aligned_cols=103  Identities=19%  Similarity=0.285  Sum_probs=75.6

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc-
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT-  135 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~-  135 (183)
                      .-++..|+|+..+..|+ +.+.|+.| .|.+|+=....-.++|..|+..+..++-++.++    ++..+++|+|...+. 
T Consensus         7 ~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR----nvKlialS~d~vesH~   81 (224)
T KOG0854|consen    7 RLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR----NVKLIALSVDDVESHK   81 (224)
T ss_pred             cccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc----CceEEEeehhhHHHHH
Confidence            34556799999988886 78899876 698888777777778999999999999999877    899999999832211 


Q ss_pred             --HHHHHHHHHHhC--CCeEEecCCHHHHHHHHhhcC
Q psy17592        136 --PELVGKYVKEFS--PKFIGLTGTVEQVAAACKAYR  168 (183)
Q Consensus       136 --~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~g  168 (183)
                        .+.++.|.+..+  .+|+.+.++..+   ++-.||
T Consensus        82 ~Wi~DIks~~~~~~~~~~yPIIaD~~re---la~~l~  115 (224)
T KOG0854|consen   82 DWIKDIKSYAKVKNHSVPYPIIADPNRE---LAFLLN  115 (224)
T ss_pred             HHHHHHHHHHhccCCCCCCCeecCCchh---hhhhhc
Confidence              123333444444  678888777665   444444

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.34  E-value=1.8e-06  Score=59.76  Aligned_cols=51  Identities=12%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      +++.++|+||++||++ |+...|.|.++.+.+      +.+++..|..|   +.++...+|
T Consensus        21 ~~~~vvv~f~a~wC~~-C~~~~~~l~~la~~~------~~i~~~~vd~d---~~~~l~~~~   71 (113)
T cd02975          21 NPVDLVVFSSKEGCQY-CEVTKQLLEELSELS------DKLKLEIYDFD---EDKEKAEKY   71 (113)
T ss_pred             CCeEEEEEeCCCCCCC-hHHHHHHHHHHHHhc------CceEEEEEeCC---cCHHHHHHc
Confidence            3466889999999998 999999999998764      15888888888   344444433

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.34  E-value=1.9e-06  Score=59.37  Aligned_cols=43  Identities=9%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             CCCEEEEEEEcCC--CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTH--CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~--C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|.+++|.||++|  ||+ |....|.|.++.+++.+     .+.++-|+.|
T Consensus        26 ~~~~~v~~f~~~~~~cp~-c~~i~P~leela~e~~~-----~v~f~kVdid   70 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPE-VLDVAVVLPELLKAFPG-----RFRAAVVGRA   70 (111)
T ss_pred             CCCCEEEEecCCcccCcc-hhhhHhHHHHHHHHCCC-----cEEEEEEECC
Confidence            5788999999997  998 99999999999999853     4788888888

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00102 disulphide isomerase; Provisional

Probab=98.34  E-value=1.7e-06  Score=73.86  Aligned_cols=46  Identities=11%  Similarity=0.174  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++.++|+||++||++ |+...|.+.++.+.+.+.  ..++.+..|..+
T Consensus        48 ~~~~~lv~f~a~wC~~-Ck~~~p~~~~~a~~~~~~--~~~i~~~~vd~~   93 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGH-CKRLAPEYKKAAKMLKEK--KSEIVLASVDAT   93 (477)
T ss_pred             cCCcEEEEEECCCCHH-HHHhhHHHHHHHHHHHhc--CCcEEEEEEECC
Confidence            5789999999999998 999999999999887654  335776666655

>TIGR01068 thioredoxin thioredoxin

Probab=98.33  E-value=1.6e-06  Score=57.83  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=37.0

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++.++|+||++||++ |+...+.+.++.+++.+     ++.++.|..|
T Consensus        14 ~~~vvi~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~vd~~   55 (101)
T TIGR01068        14 DKPVLVDFWAPWCGP-CKMIAPILEELAKEYEG-----KVKFVKLNVD   55 (101)
T ss_pred             CCcEEEEEECCCCHH-HHHhCHHHHHHHHHhcC-----CeEEEEEECC
Confidence            579999999999998 99999999999987743     5888888877

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.30  E-value=1.6e-06  Score=58.10  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||.|++.||++ |....|.+.++.+++.+     ++.++.|..+
T Consensus        16 ~~~~vvv~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~v~~~~vd~~   58 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPP-CKAFKPILEKLAKEYKD-----NVKFAKVDCD   58 (103)
T ss_dssp             TSSEEEEEEESTTSHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETT
T ss_pred             cCCCEEEEEeCCCCCc-cccccceeccccccccc-----ccccchhhhh
Confidence            3699999999999998 99999999999999753     5888888877

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.28  E-value=1.7e-06  Score=66.92  Aligned_cols=43  Identities=9%  Similarity=0.168  Sum_probs=35.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.++++.+++++     .+.+..|..+
T Consensus        51 ~~~~vlV~FyApWC~~-Ck~~~P~~e~la~~~~~-----~v~~~~VD~~   93 (224)
T PTZ00443         51 TTGPWFVKFYAPWCSH-CRKMAPAWERLAKALKG-----QVNVADLDAT   93 (224)
T ss_pred             CCCCEEEEEECCCChH-HHHHHHHHHHHHHHcCC-----CeEEEEecCc
Confidence            3578999999999998 99999999999998753     4666666555

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.27  E-value=8.3e-07  Score=60.88  Aligned_cols=81  Identities=16%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVA  161 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  161 (183)
                      +||+++++||.+|||. |+...+.+.+..+-...-  .+++.++.++++   +.......+....+..+.     .....
T Consensus         4 ~~k~~v~~F~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~   72 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPY-CKKLEKELFPDNDVARYL--KDDFQVIFVNID---DSRDESEAVLDFDGQKNV-----RLSNK   72 (112)
T ss_dssp             TSSEEEEEEE-TT-HH-HHHHHHHHHHHHHHHCEE--HCECEEEECESH---SHHHHHHHHHSHTCHSSC-----HHHHH
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHHHHh--hcCeEEEEEecC---Ccccccccccccccchhh-----hHHHH
Confidence            5899999999999998 999888888654421110  125788888887   333333334433322111     12333


Q ss_pred             HHHhhcCeeEee
Q psy17592        162 AACKAYRVYFSA  173 (183)
Q Consensus       162 ~~~~~~gv~~~~  173 (183)
                      ++++.|||...+
T Consensus        73 ~l~~~~~v~gtP   84 (112)
T PF13098_consen   73 ELAQRYGVNGTP   84 (112)
T ss_dssp             HHHHHTT--SSS
T ss_pred             HHHHHcCCCccC
Confidence            577777766444

...

>KOG1651|consensus

Probab=98.27  E-value=3.9e-06  Score=61.05  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPELV  139 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~~  139 (183)
                      -+|+..|.+|+.++++.++||++||.=.||-|+. =...-..|..|+++|+++    +++|++.-.+-    +..+-+++
T Consensus        15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~-T~~~Y~~l~~L~~ky~~~----Gl~ILaFPCNQFg~QEp~~n~Ei   89 (171)
T KOG1651|consen   15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGL-TESQYTELNELYEKYKDQ----GLEILAFPCNQFGNQEPGSNEEI   89 (171)
T ss_pred             eeeEEecCCCCCccHHHhCCeEEEEEEccccccc-chhcchhHHHHHHHHhhC----CeEEEEeccccccCcCCCCcHHH
Confidence            5899999999999999999999988888999996 565667999999999977    89999996641    11344667


Q ss_pred             HHHHH-HhCCCeEE
Q psy17592        140 GKYVK-EFSPKFIG  152 (183)
Q Consensus       140 ~~~~~-~~~~~~~~  152 (183)
                      ..|+. .++..|+.
T Consensus        90 ~~f~~~r~~~~f~i  103 (171)
T KOG1651|consen   90 LNFVKVRYGAEFPI  103 (171)
T ss_pred             HHHHHhccCCCCcc
Confidence            77774 55666644

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.25  E-value=1.8e-06  Score=73.34  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=39.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++||+||++||++ |+...|.+.++.++++.+    ++.|+.|.+|
T Consensus       370 ~~k~VLV~FyApWC~~-Ck~m~P~~eelA~~~~~~----~v~~~kVdvD  413 (463)
T TIGR00424       370 RKEAWLVVLYAPWCPF-CQAMEASYLELAEKLAGS----GVKVAKFRAD  413 (463)
T ss_pred             CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC----CcEEEEEECC
Confidence            6889999999999998 999999999999998654    5888889888

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.20  E-value=3.6e-06  Score=62.86  Aligned_cols=41  Identities=7%  Similarity=0.055  Sum_probs=36.1

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++|||+||++||++ |....|.|.++..++.      .+.|+-|..|
T Consensus        83 ~~~VVV~Fya~wc~~-Ck~m~~~l~~LA~~~~------~vkF~kVd~d  123 (175)
T cd02987          83 DTTVVVHIYEPGIPG-CAALNSSLLCLAAEYP------AVKFCKIRAS  123 (175)
T ss_pred             CcEEEEEEECCCCch-HHHHHHHHHHHHHHCC------CeEEEEEecc
Confidence            459999999999998 9999999999998863      5888888777

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.18  E-value=1.7e-06  Score=66.85  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=82.2

Q ss_pred             cCCCcccCCCeEEEcCCCCe-eecCcc-C-CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC-
Q psy17592         56 NLGKVAIGGKFELVDCNNKP-VKSEDF-L-GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP-  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~-v~l~~~-~-gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp-  131 (183)
                      ....+..+||.++.+.+|+. .++-|+ + +||.||||++-.||+ -...+..++++.+++.+.     +.++.|-+.. 
T Consensus        72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPp-F~~~l~~f~~l~~~f~d~-----adFl~VYI~EA  145 (237)
T PF00837_consen   72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPP-FMAKLDAFKRLVEDFSDV-----ADFLIVYIEEA  145 (237)
T ss_pred             ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchH-HHHHHHHHHHHHHHhhhh-----hheehhhHhhh
Confidence            33456667999999999998 888888 4 489999999999998 899999999999998753     4555554431 


Q ss_pred             ----------------CCCcHH---HHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCCCC
Q psy17592        132 ----------------ERDTPE---LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKD  179 (183)
Q Consensus       132 ----------------~~d~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~  179 (183)
                                      ++.+.+   .+.+.+.++.+..+.+.++.+.  ...++||+..++-..-++
T Consensus       146 HpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN--~~~~~YgA~PeRlyIi~~  210 (237)
T PF00837_consen  146 HPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDN--NFNKAYGALPERLYIIQD  210 (237)
T ss_pred             CcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCC--HHHHHhCCCcceEEEEEC
Confidence                            111222   2333444555788888776543  477889988777544433

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.16  E-value=5.9e-06  Score=54.69  Aligned_cols=45  Identities=13%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|.||++||++ |+...+.+.++.+.++.   .+++.++.|+.+
T Consensus        14 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~---~~~~~~~~v~~~   58 (101)
T cd02961          14 DSKDVLVEFYAPWCGH-CKALAPEYEKLAKELKG---DGKVVVAKVDCT   58 (101)
T ss_pred             CCCcEEEEEECCCCHH-HHhhhHHHHHHHHHhcc---CCceEEEEeecc
Confidence            4569999999999998 99999999999988851   136888888776

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.14  E-value=5.4e-06  Score=55.68  Aligned_cols=49  Identities=22%  Similarity=0.473  Sum_probs=40.2

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .....+++++++++||++|||+ |...+|.+.++.+++..     .+.++.|...
T Consensus        25 ~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~i~~~   73 (127)
T COG0526          25 LSLSELKGKPVLVDFWAPWCPP-CRAEAPLLEELAEEYGG-----DVEVVAVNVD   73 (127)
T ss_pred             eehhhcCCceEEEEEEcCcCHH-HHhhchhHHHHHHHhcC-----CcEEEEEECC
Confidence            3444455899999999999998 99999999999998753     4778888774

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.10  E-value=1.4e-05  Score=51.46  Aligned_cols=47  Identities=19%  Similarity=0.433  Sum_probs=36.5

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .+.-||++||++ |+...+.|.++.++++.     .+.++-|+.+   +.++..++
T Consensus         2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~~-----~~~~~~vd~~---~~~~~~~~   48 (82)
T TIGR00411         2 KIELFTSPTCPY-CPAAKRVVEEVAKEMGD-----AVEVEYINVM---ENPQKAME   48 (82)
T ss_pred             EEEEEECCCCcc-hHHHHHHHHHHHHHhcC-----ceEEEEEeCc---cCHHHHHH
Confidence            467899999998 99999999999988742     4788888876   34444443

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.10  E-value=5.8e-06  Score=62.61  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=36.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++|||+||++||++ |+...|.|.+++.++.      .+.|+-|..|
T Consensus       101 ~~~~VVV~Fya~wc~~-C~~m~~~l~~LA~k~~------~vkFvkI~ad  142 (192)
T cd02988         101 KDTWVVVHLYKDGIPL-CRLLNQHLSELARKFP------DTKFVKIIST  142 (192)
T ss_pred             CCCEEEEEEECCCCch-HHHHHHHHHHHHHHCC------CCEEEEEEhH
Confidence            3569999999999998 9999999999999874      5888888776

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.10  E-value=7.2e-06  Score=71.81  Aligned_cols=57  Identities=12%  Similarity=0.116  Sum_probs=40.4

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .+||+|+|+||++||++ |+...+..   .+++++++      ++.++-|+++.   ..+..++++++++
T Consensus       472 ~~gK~VlVdF~A~WC~~-Ck~~e~~~~~~~~v~~~l~------~~~~v~vDvt~---~~~~~~~l~~~~~  531 (571)
T PRK00293        472 GKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQQALA------DTVLLQADVTA---NNAEDVALLKHYN  531 (571)
T ss_pred             hcCCcEEEEEECCcCHh-HHHHHHHhcCCHHHHHHhc------CCEEEEEECCC---CChhhHHHHHHcC
Confidence            46899999999999998 99877764   55666553      57777777763   2234456666666

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.08  E-value=1.5e-05  Score=51.61  Aligned_cols=41  Identities=17%  Similarity=0.300  Sum_probs=36.0

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++|+||++||+. |....+.++++.++  .    +++.++.|+.+
T Consensus        10 ~~~~ll~~~~~~C~~-C~~~~~~~~~~~~~--~----~~~~~~~i~~~   50 (93)
T cd02947          10 AKPVVVDFWAPWCGP-CKAIAPVLEELAEE--Y----PKVKFVKVDVD   50 (93)
T ss_pred             CCcEEEEEECCCChh-HHHhhHHHHHHHHH--C----CCceEEEEECC
Confidence            388999999999998 99999999999887  2    26889999887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PTZ00102 disulphide isomerase; Provisional

Probab=98.07  E-value=5.6e-06  Score=70.66  Aligned_cols=59  Identities=10%  Similarity=-0.011  Sum_probs=44.5

Q ss_pred             EEcCCCCeeecC-ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSE-DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~-~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +....|+.+... .-.||+++|+||++||++ |+...|.+.++.+.+++.   +.+.+..|..|
T Consensus       359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~-C~~~~p~~~~~a~~~~~~---~~v~~~~id~~  418 (477)
T PTZ00102        359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGH-CKNLEPVYNELGEKYKDN---DSIIVAKMNGT  418 (477)
T ss_pred             eEEecccchHHHHhcCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHhccC---CcEEEEEEECC
Confidence            444555554422 125899999999999998 999999999999887653   25777777766

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.06  E-value=1.1e-05  Score=54.37  Aligned_cols=43  Identities=21%  Similarity=0.307  Sum_probs=38.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|+++++.|+++||++ |....+.+.++.+++++     .+.|+.|..|
T Consensus        11 ~~~~~~~~f~~~~~~~-~~~~~~~~~~vA~~~~~-----~v~f~~vd~~   53 (103)
T cd02982          11 SGKPLLVLFYNKDDSE-SEELRERFKEVAKKFKG-----KLLFVVVDAD   53 (103)
T ss_pred             cCCCEEEEEEcCChhh-HHHHHHHHHHHHHHhCC-----eEEEEEEchH
Confidence            3899999999999998 99999999999999863     5888888776

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PLN02309 5'-adenylylsulfate reductase

Probab=98.03  E-value=1e-05  Score=68.71  Aligned_cols=44  Identities=16%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++|++||+||++||++ |+...|.+.++.+++...    ++.|..|+.|
T Consensus       364 ~~k~vlV~FyApWC~~-Cq~m~p~~e~LA~~~~~~----~V~f~kVD~d  407 (457)
T PLN02309        364 RKEPWLVVLYAPWCPF-CQAMEASYEELAEKLAGS----GVKVAKFRAD  407 (457)
T ss_pred             CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC----CeEEEEEECC
Confidence            5899999999999998 999999999999998644    6888888877

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.00  E-value=5.3e-05  Score=53.37  Aligned_cols=44  Identities=18%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      -+||+|+|+|+++||++ |+..-+..   .++.+.+.+     ++.+|-|..|
T Consensus        13 ~~~KpVll~f~a~WC~~-Ck~me~~~f~~~~V~~~l~~-----~fv~VkvD~~   59 (124)
T cd02955          13 REDKPIFLSIGYSTCHW-CHVMEHESFEDEEVAAILNE-----NFVPIKVDRE   59 (124)
T ss_pred             HcCCeEEEEEccCCCHh-HHHHHHHccCCHHHHHHHhC-----CEEEEEEeCC
Confidence            36899999999999998 99876522   244444422     4555555444

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.96  E-value=2.2e-05  Score=54.97  Aligned_cols=54  Identities=9%  Similarity=0.067  Sum_probs=39.8

Q ss_pred             CCEEEEEEEcCCCCC-CcH--HHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         83 GKWALIYFGFTHCPD-ICP--DELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        83 gk~vll~f~~t~C~~-~C~--~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      ..++|++||++||++ .|+  ...|.|.++..++-+.   +++.|.-|++|   +.++..++|
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~---~~v~~~kVD~d---~~~~La~~~   83 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED---KGIGFGLVDSK---KDAKVAKKL   83 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc---CCCEEEEEeCC---CCHHHHHHc
Confidence            358999999999975 599  7778899988887322   26899999988   344444433

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.95  E-value=1.8e-05  Score=66.99  Aligned_cols=46  Identities=13%  Similarity=0.260  Sum_probs=38.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |+...|.+.++.+.+...  ..++.++.|..+
T Consensus        17 ~~~~~~v~f~a~wC~~-c~~~~~~~~~~a~~~~~~--~~~v~~~~vd~~   62 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGH-CKSLAPEYEKAADELKKK--GPPIKLAKVDAT   62 (462)
T ss_pred             cCCCEEEEEECCCCHH-HHhhhHHHHHHHHHHhhc--CCceEEEEEECC
Confidence            5788999999999998 999999999999988754  335777777776

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00062 glutaredoxin; Provisional

Probab=97.90  E-value=2.2e-05  Score=59.96  Aligned_cols=40  Identities=10%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..++++||++|||+ |+...+.|.++.+++.      ++.|+-|..|
T Consensus        18 g~~vl~f~a~w~~~-C~~m~~vl~~l~~~~~------~~~F~~V~~d   57 (204)
T PTZ00062         18 GKLVLYVKSSKEPE-YEQLMDVCNALVEDFP------SLEFYVVNLA   57 (204)
T ss_pred             CcEEEEEeCCCCcc-hHHHHHHHHHHHHHCC------CcEEEEEccc
Confidence            45899999999998 9999999999999864      5777777655

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=97.81  E-value=9.5e-05  Score=45.85  Aligned_cols=38  Identities=26%  Similarity=0.522  Sum_probs=30.9

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      -+..|+++|||+ |....+.|.++....      +++.+..|.+|
T Consensus         2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~------~~i~~~~id~~   39 (67)
T cd02973           2 NIEVFVSPTCPY-CPDAVQAANRIAALN------PNISAEMIDAA   39 (67)
T ss_pred             EEEEEECCCCCC-cHHHHHHHHHHHHhC------CceEEEEEEcc
Confidence            367899999998 999999999986642      26888888776

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=97.81  E-value=0.00019  Score=54.53  Aligned_cols=108  Identities=16%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             HhhhcCCCcccCCCeEEEcCCCCeeecCcc-CCCE--EEEEEE-----cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCee
Q psy17592         52 ERRRNLGKVAIGGKFELVDCNNKPVKSEDF-LGKW--ALIYFG-----FTHCPDICPDELEKMAAVVNKIDGQPNVPNIT  123 (183)
Q Consensus        52 ~~~~~~~~~~~~p~f~l~d~~G~~v~l~~~-~gk~--vll~f~-----~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~  123 (183)
                      +....++...+..+..+...+|+ ++|.|+ .||-  ++-.|.     ...||. |...+.++......+...    ++.
T Consensus        35 a~RR~LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~g-Cs~~~D~~~g~l~hL~~r----d~t  108 (211)
T PF05988_consen   35 AERRRLPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPG-CSFWADHIDGALRHLHAR----DTT  108 (211)
T ss_pred             HHHhhCCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCc-hhhhHhhhhhhHHHHHhC----Cce
Confidence            34455666666678899888997 898886 7763  344454     678997 999999997666666654    799


Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       124 ~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ++.||-.    ..+++..|.+..|-.++.++.....   +-..||+.+.
T Consensus       109 fa~vSra----P~~~i~afk~rmGW~~pw~Ss~gs~---Fn~D~~~~~~  150 (211)
T PF05988_consen  109 FAVVSRA----PLEKIEAFKRRMGWTFPWYSSYGSD---FNYDFGVSFD  150 (211)
T ss_pred             EEEEeCC----CHHHHHHHHHhcCCCceEEEcCCCc---ccccccceec
Confidence            9999966    6899999999999888777654332   5555666543

>PHA02125 thioredoxin-like protein

Probab=97.81  E-value=3.7e-05  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAV  109 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l  109 (183)
                      +++|+++||++ |+...|.|.++
T Consensus         2 iv~f~a~wC~~-Ck~~~~~l~~~   23 (75)
T PHA02125          2 IYLFGAEWCAN-CKMVKPMLANV   23 (75)
T ss_pred             EEEEECCCCHh-HHHHHHHHHHH
Confidence            78999999998 99999988654

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.81  E-value=7.4e-05  Score=47.93  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEE
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFI  127 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~I  127 (183)
                      .|.||++|||+ |....|.++++.+++..     .+.++-|
T Consensus         2 ~i~~~a~~C~~-C~~~~~~~~~~~~e~~~-----~~~~~~v   36 (76)
T TIGR00412         2 KIQIYGTGCAN-CQMTEKNVKKAVEELGI-----DAEFEKV   36 (76)
T ss_pred             EEEEECCCCcC-HHHHHHHHHHHHHHcCC-----CeEEEEe
Confidence            37899999998 99999999999998742     3565444

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.78  E-value=5.1e-05  Score=64.21  Aligned_cols=46  Identities=13%  Similarity=0.155  Sum_probs=39.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++.++|+||++||++ |....|.+.++.+.++..  .+++.+..|..+
T Consensus       363 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~i~~~~id~~  408 (462)
T TIGR01130       363 ETKDVLVEFYAPWCGH-CKNLAPIYEELAEKYKDA--ESDVVIAKMDAT  408 (462)
T ss_pred             CCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhhcC--CCcEEEEEEECC
Confidence            4789999999999998 999999999999998752  226888888876

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.75  E-value=9.8e-05  Score=48.92  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++.+.+..|++.||++ |+...+.+.++...+      +++.+..+..|
T Consensus         8 ~~l~~pv~i~~F~~~~C~~-C~~~~~~~~~l~~~~------~~i~~~~vd~~   52 (89)
T cd03026           8 RRLNGPINFETYVSLSCHN-CPDVVQALNLMAVLN------PNIEHEMIDGA   52 (89)
T ss_pred             HhcCCCEEEEEEECCCCCC-cHHHHHHHHHHHHHC------CCceEEEEEhH
Confidence            4677888899999999998 999999999988764      36888888877

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG0908|consensus

Probab=97.75  E-value=3.4e-05  Score=59.84  Aligned_cols=42  Identities=21%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      -+|.++|.|.|+||+| |....|.+.++..+|.      +..|+=|.+|
T Consensus        20 g~k~v~Vdfta~wCGP-Ck~IaP~Fs~lankYp------~aVFlkVdVd   61 (288)
T KOG0908|consen   20 GGKLVVVDFTASWCGP-CKRIAPIFSDLANKYP------GAVFLKVDVD   61 (288)
T ss_pred             CceEEEEEEEecccch-HHhhhhHHHHhhhhCc------ccEEEEEeHH
Confidence            4699999999999999 9999999999999985      4566666666

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.62  E-value=0.00023  Score=46.15  Aligned_cols=43  Identities=28%  Similarity=0.504  Sum_probs=30.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+|++.||++ |...-..+   .++.+.+.+     ++..+-|..+
T Consensus        16 ~~kpvlv~f~a~wC~~-C~~l~~~~~~~~~v~~~~~~-----~fv~v~vd~~   61 (82)
T PF13899_consen   16 EGKPVLVDFGADWCPP-CKKLEREVFSDPEVQEALNK-----NFVLVKVDVD   61 (82)
T ss_dssp             HTSEEEEEEETTTTHH-HHHHHHHTTTSHHHHHHHHH-----CSEEEEEETT
T ss_pred             cCCCEEEEEECCCCHh-HHHHHHHHcCCHHHHHHHHC-----CEEEEEEEcC
Confidence            5899999999999998 99987666   333333332     4555555554

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.58  E-value=0.00025  Score=54.50  Aligned_cols=51  Identities=20%  Similarity=0.280  Sum_probs=35.0

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      +.+.++++.||++|||+ |+...+.++++..+.      +++.+.-|..|   +.++..++
T Consensus       131 ~~~pv~I~~F~a~~C~~-C~~~~~~l~~l~~~~------~~i~~~~vD~~---~~~~~~~~  181 (215)
T TIGR02187       131 LDEPVRIEVFVTPTCPY-CPYAVLMAHKFALAN------DKILGEMIEAN---ENPDLAEK  181 (215)
T ss_pred             cCCCcEEEEEECCCCCC-cHHHHHHHHHHHHhc------CceEEEEEeCC---CCHHHHHH
Confidence            34455677799999998 999888888877652      25777666655   34444443

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.47  E-value=0.00027  Score=41.75  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      |+.||.+||+. |....+.+.++  ...    ..++.++.++.+.
T Consensus         1 l~~~~~~~c~~-c~~~~~~~~~~--~~~----~~~~~~~~~~~~~   38 (69)
T cd01659           1 LVLFYAPWCPF-CQALRPVLAEL--ALL----NKGVKFEAVDVDE   38 (69)
T ss_pred             CEEEECCCChh-HHhhhhHHHHH--Hhh----CCCcEEEEEEcCC
Confidence            57899999997 99999999998  222    2379999999884

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.45  E-value=0.0002  Score=55.14  Aligned_cols=46  Identities=22%  Similarity=0.469  Sum_probs=41.9

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +.++.+++-|++|+.+.|+. |....|.|+.+.+++       ++.++.||+|.
T Consensus       115 l~~la~~~gL~~F~~~~C~~-C~~~~pil~~~~~~y-------g~~v~~vs~DG  160 (215)
T PF13728_consen  115 LKQLAQKYGLFFFYRSDCPY-CQQQAPILQQFADKY-------GFSVIPVSLDG  160 (215)
T ss_pred             HHHHhhCeEEEEEEcCCCch-hHHHHHHHHHHHHHh-------CCEEEEEecCC
Confidence            55677899999999999997 999999999999987       79999999994

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.30  E-value=0.00028  Score=55.35  Aligned_cols=46  Identities=15%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ++++.+++-|++|+.+.||. |....|.|+.+.+++       ++.++.||+|.
T Consensus       138 i~~la~~~GL~fFy~s~Cp~-C~~~aPil~~fa~~y-------g~~v~~VS~DG  183 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPI-DGQLAQVINDFRDTY-------GLSVIPVSVDG  183 (248)
T ss_pred             HHHHHhcceEEEEECCCCch-hHHHHHHHHHHHHHh-------CCeEEEEecCC
Confidence            55667889999999999997 999999999999988       79999999995

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.0019  Score=49.32  Aligned_cols=109  Identities=18%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             hcCCCcccCCCeEEEcCCCCeeecCcc-CCCE-EEEE-E-----EcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEE
Q psy17592         55 RNLGKVAIGGKFELVDCNNKPVKSEDF-LGKW-ALIY-F-----GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIF  126 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~d~~G~~v~l~~~-~gk~-vll~-f-----~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~  126 (183)
                      ..++-..+-.+..+...+|+ .+|.|| .||- .||| |     |...||. |...+-++.-....+...    +|.++.
T Consensus        44 R~LPw~~V~K~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~g-CS~laD~~dGa~~HL~~~----dv~lv~  117 (247)
T COG4312          44 RALPWGEVDKDYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPG-CSFLADHWDGAVAHLEHH----DVTLVA  117 (247)
T ss_pred             HhCCcceecceeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCc-hhhHHhhhhhhhhhHhhc----CceEEE
Confidence            44544445567778888885 688886 7764 3443 3     4567997 999999997777766644    899999


Q ss_pred             EEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592        127 ISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPK  176 (183)
Q Consensus       127 Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~  176 (183)
                      ||--    ..+.+..|.+.+|-.|+.++.....   +-+.|++.+.+...
T Consensus       118 VsRA----Pl~~l~~~k~rmGW~f~w~Ss~~s~---Fn~Df~vsf~~~q~  160 (247)
T COG4312         118 VSRA----PLEELVAYKRRMGWQFPWVSSTDSD---FNRDFQVSFTEDQQ  160 (247)
T ss_pred             EecC----cHHHHHHHHHhcCCcceeEeccCcc---cccccccccchhhc
Confidence            9965    5799999999999888777665443   56667666655443

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.29  E-value=6.7e-05  Score=53.23  Aligned_cols=57  Identities=23%  Similarity=0.442  Sum_probs=40.5

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK  144 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~  144 (183)
                      ++.+..+..++.|..+|||+ |..++|.|.++.+..      +++.+=.|..|   ++++.+.+|+.
T Consensus        36 l~~~~~~~~ilvi~e~WCgD-~~~~vP~l~kiae~~------p~i~~~~i~rd---~~~el~~~~lt   92 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGD-CARNVPVLAKIAEAN------PNIEVRIILRD---ENKELMDQYLT   92 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HH-HHHHHHHHHHHHHH-------TTEEEEEE-HH---HHHHHTTTTTT
T ss_pred             HHhcCCCcEEEEEECCCchh-HHHHHHHHHHHHHhC------CCCeEEEEEec---CChhHHHHHHh
Confidence            34456678899999999998 999999999999974      26777777777   67788888877

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.27  E-value=0.0011  Score=41.21  Aligned_cols=46  Identities=17%  Similarity=0.287  Sum_probs=33.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +..|+++|||+ |+...+.|.+.           ++.+..++++   +.++..+++.+.++
T Consensus         2 i~lf~~~~C~~-C~~~~~~l~~~-----------~i~~~~vdi~---~~~~~~~~~~~~~~   47 (74)
T TIGR02196         2 VKVYTTPWCPP-CKKAKEYLTSK-----------GIAFEEIDVE---KDSAAREEVLKVLG   47 (74)
T ss_pred             EEEEcCCCChh-HHHHHHHHHHC-----------CCeEEEEecc---CCHHHHHHHHHHhC
Confidence            45689999998 99987776541           5777788777   34555666777766

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.23  E-value=0.00073  Score=51.96  Aligned_cols=43  Identities=9%  Similarity=0.197  Sum_probs=32.6

Q ss_pred             cCCCEEEEEEEc---CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGF---THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~---t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++...++.|.+   +||++ |+...|.+.++.+++.      ++++..+.+|
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~-C~~~~p~l~~la~~~~------~~~i~~v~vd   62 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQY-CKETEQLLEELSEVSP------KLKLEIYDFD   62 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCc-hHHHHHHHHHHHhhCC------CceEEEEecC
Confidence            455555666767   99998 9999999999988863      4566666666

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.23  E-value=0.00041  Score=54.76  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      +.++.+++-|++|+.+.||. |....|.|+.+.+++       ++.++.||+|..
T Consensus       145 i~~la~~~gL~fFy~~~C~~-C~~~apil~~fa~~y-------gi~v~~VS~DG~  191 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPI-SQKMAPVIQAFAKEY-------GISVIPISVDGT  191 (256)
T ss_pred             HHHHHhceeEEEEECCCCch-hHHHHHHHHHHHHHh-------CCeEEEEecCCC
Confidence            55667889999999999997 999999999999988       799999999953

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.18  E-value=0.001  Score=41.99  Aligned_cols=32  Identities=13%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.-||++|||+ |+...+.|.++           ++.+-.|++|
T Consensus         2 v~ly~~~~C~~-C~~~~~~L~~~-----------~~~~~~idi~   33 (77)
T TIGR02200         2 ITVYGTTWCGY-CAQLMRTLDKL-----------GAAYEWVDIE   33 (77)
T ss_pred             EEEEECCCChh-HHHHHHHHHHc-----------CCceEEEeCc
Confidence            56799999998 99988877654           3455567776

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0066  Score=43.75  Aligned_cols=104  Identities=12%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             cCCCeEEEcC------CC-CeeecCcc-CCCEEEEE-EEcCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         62 IGGKFELVDC------NN-KPVKSEDF-LGKWALIY-FGFTHCPDICPD-ELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        62 ~~p~f~l~d~------~G-~~v~l~~~-~gk~vll~-f~~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ..|..++...      +| ..++..++ +||.|+|+ .-+.--|+ |.. .+|...+++++++.++   -=+|+.||++ 
T Consensus         8 klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPT-CS~~hlPgY~~~~d~f~~kG---VD~I~cVSVN-   82 (165)
T COG0678           8 KLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPT-CSSSHLPGYLELADEFKAKG---VDEIYCVSVN-   82 (165)
T ss_pred             cCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCC-cccccCccHHHHHHHHHHcC---CceEEEEEeC-
Confidence            3465555443      33 24555554 88766555 44556665 877 6899999999998763   3356777877 


Q ss_pred             CCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592        132 ERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAGPK  176 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~~~  176 (183)
                         ++-.+.+|.+..+.  +..++.+...+   +.+.+|.-..+++.
T Consensus        83 ---D~FVm~AWak~~g~~~~I~fi~Dg~ge---FTk~~Gm~~d~~~~  123 (165)
T COG0678          83 ---DAFVMNAWAKSQGGEGNIKFIPDGNGE---FTKAMGMLVDKSDL  123 (165)
T ss_pred             ---cHHHHHHHHHhcCCCccEEEecCCCch---hhhhcCceeecccC
Confidence               67899999999984  46777665544   88888887766553

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=96.89  E-value=0.0025  Score=45.19  Aligned_cols=24  Identities=13%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM  106 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l  106 (183)
                      +||+++|+|++.||++ |+..-...
T Consensus        22 ~~Kpvmv~f~sdwC~~-Ck~l~k~~   45 (130)
T cd02960          22 SNKPLMVIHHLEDCPH-SQALKKAF   45 (130)
T ss_pred             CCCeEEEEEeCCcCHh-HHHHHHHh
Confidence            6899999999999998 99976654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG1731|consensus

Probab=96.68  E-value=0.0007  Score=58.27  Aligned_cols=44  Identities=14%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.-+|.|+++||+. |+...|..+++.+.+.+=  .+-|.+-.|..-
T Consensus        58 ~~~lVEFy~swCGh-Cr~FAPtfk~~A~dl~~W--~~vv~vaaVdCA  101 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGH-CRAFAPTFKKFAKDLEKW--RPVVRVAAVDCA  101 (606)
T ss_pred             hhHHHHHHHhhhhh-hhhcchHHHHHHHHHhcc--cceeEEEEeecc
Confidence            46789999999997 999999999999988754  455666666554

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=96.63  E-value=0.016  Score=39.72  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=19.9

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELE  104 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~  104 (183)
                      -++|+++|+|.+.||++ |.....
T Consensus        15 ~~~K~llv~~~~~~c~~-c~~~~~   37 (114)
T cd02958          15 SEKKWLLVYLQSEDEFD-SQVLNR   37 (114)
T ss_pred             hhCceEEEEEecCCcch-HHHHHH
Confidence            36899999999999998 988654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR02180 GRX_euk Glutaredoxin

Probab=96.62  E-value=0.0057  Score=39.22  Aligned_cols=49  Identities=18%  Similarity=0.401  Sum_probs=33.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ++.|+.+|||+ |....+.|.++.  +.     ..+.++-|+.+   +..+.+++++.+.
T Consensus         1 V~~f~~~~Cp~-C~~~~~~L~~~~--i~-----~~~~~~~v~~~---~~~~~~~~~l~~~   49 (84)
T TIGR02180         1 VVVFSKSYCPY-CKKAKEILAKLN--VK-----PAYEVVELDQL---SNGSEIQDYLEEI   49 (84)
T ss_pred             CEEEECCCChh-HHHHHHHHHHcC--CC-----CCCEEEEeeCC---CChHHHHHHHHHH
Confidence            46788999998 999999998875  11     13667777665   2345555555543

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG0190|consensus

Probab=96.51  E-value=0.0032  Score=53.88  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ  116 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~  116 (183)
                      .+|=|||.|+|+||++ |....|.+++|.+.+++.
T Consensus       383 e~KdVLvEfyAPWCgH-Ck~laP~~eeLAe~~~~~  416 (493)
T KOG0190|consen  383 EGKDVLVEFYAPWCGH-CKALAPIYEELAEKYKDD  416 (493)
T ss_pred             cccceEEEEcCcccch-hhhhhhHHHHHHHHhcCC
Confidence            5789999999999998 999999999999999864

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=96.37  E-value=0.02  Score=39.76  Aligned_cols=61  Identities=10%  Similarity=0.108  Sum_probs=37.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      +.+.+||.|.++| |. |.. +|+..+|..++...  .+.+.+--|..|...++  .-++.+++++++
T Consensus        17 ~~~~vlV~F~A~~-Pw-c~k-~~~~~~LA~e~~~a--a~~v~lakVd~~d~~~~--~~~~L~~~y~I~   77 (116)
T cd03007          17 KFKYSLVKFDTAY-PY-GEK-HEAFTRLAESSASA--TDDLLVAEVGIKDYGEK--LNMELGERYKLD   77 (116)
T ss_pred             cCCcEEEEEeCCC-CC-CCC-hHHHHHHHHHHHhh--cCceEEEEEecccccch--hhHHHHHHhCCC
Confidence            4578999999966 43 554 58888888887653  23455555555421112  225667777653

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.27  E-value=0.012  Score=38.20  Aligned_cols=38  Identities=18%  Similarity=0.463  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +.-|..+|||. |......|+++..+++      ++.+..|+++.
T Consensus         3 v~iy~~~~C~~-C~~a~~~L~~l~~~~~------~i~~~~idi~~   40 (85)
T PRK11200          3 VVIFGRPGCPY-CVRAKELAEKLSEERD------DFDYRYVDIHA   40 (85)
T ss_pred             EEEEeCCCChh-HHHHHHHHHhhccccc------CCcEEEEECCC
Confidence            56788999998 9999999999886532      67777777773

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=96.18  E-value=0.014  Score=45.11  Aligned_cols=82  Identities=11%  Similarity=0.114  Sum_probs=57.8

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      |.+++-+.    ....+.+|+++||-+.-.+|.. |...+..|..|..++..++ ..+|.++.|+-.  ......+...+
T Consensus        11 p~W~i~~~----~pm~~~~G~VtvVALL~asc~~-c~~qa~~le~Lr~kL~~~g-~~~I~f~vVN~~--~~~s~~~~~~l   82 (238)
T PF04592_consen   11 PPWKIGGQ----DPMLNSLGHVTVVALLQASCYF-CLLQASRLEDLREKLENEG-LSNISFMVVNHQ--GEHSRLKYWEL   82 (238)
T ss_pred             CCceECCc----hHhhhcCCcEEeeeehhhhhHH-HHHHHHHHHHHHHHHHHCC-CCceEEEEEcCC--CcchhHHHHHH
Confidence            66666432    3456678999999999999996 9999999999999999875 457888888744  23333333344


Q ss_pred             HHhC-CCeEEe
Q psy17592        144 KEFS-PKFIGL  153 (183)
Q Consensus       144 ~~~~-~~~~~l  153 (183)
                      ++.- .+++.+
T Consensus        83 ~~r~~~~ipVy   93 (238)
T PF04592_consen   83 KRRVSEHIPVY   93 (238)
T ss_pred             HHhCCCCCcee
Confidence            4443 345544

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.11  E-value=0.014  Score=40.72  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             CCCEEEEEEEc-------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGF-------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~-------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|++++|.|.+       +|||+ |....|.+++......+     +..+|.+.+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~~~-----~~~lv~v~VG   67 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKAPE-----NARLVYVEVG   67 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-ST-----TEEEEEEE--
T ss_pred             CCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhCCC-----CceEEEEEcC
Confidence            56777777765       49998 99999999999887432     6788888775

; PDB: 1V9W_A 1WOU_A.

>KOG0190|consensus

Probab=96.10  E-value=0.0086  Score=51.31  Aligned_cols=55  Identities=15%  Similarity=0.295  Sum_probs=40.7

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ...+||.|+|.||.. |....|...+..+.+++.  +..+.+.  -+|   .+.+  .+.+.+++
T Consensus        42 ~~~vlVeFYAPWCgh-ck~LaPey~kAA~~Lke~--~s~i~La--kVD---at~~--~~~~~~y~   96 (493)
T KOG0190|consen   42 HEFVLVEFYAPWCGH-CKALAPEYEKAATELKEE--GSPVKLA--KVD---ATEE--SDLASKYE   96 (493)
T ss_pred             CceEEEEEEchhhhh-hhhhCcHHHHHHHHhhcc--CCCceeE--Eee---cchh--hhhHhhhc
Confidence            467899999999998 999999999999999876  2334333  444   2223  66777775

>KOG0541|consensus

Probab=96.09  E-value=0.026  Score=40.94  Aligned_cols=91  Identities=11%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             eeecCcc-CCCEEEEE-EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC--Ce
Q psy17592         75 PVKSEDF-LGKWALIY-FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP--KF  150 (183)
Q Consensus        75 ~v~l~~~-~gk~vll~-f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~--~~  150 (183)
                      +++++++ +||-++|+ .-+..-|.-|....|-..+-.++++.++   -=+++.||+|    ++-.++.|.+.++.  ..
T Consensus        34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKG---Vd~iicvSVn----DpFv~~aW~k~~g~~~~V  106 (171)
T KOG0541|consen   34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKG---VDEIICVSVN----DPFVMKAWAKSLGANDHV  106 (171)
T ss_pred             eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcC---CcEEEEEecC----cHHHHHHHHhhcCccceE
Confidence            7788886 89776665 4444455424455688888888888762   2357777887    78999999999975  45


Q ss_pred             EEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        151 IGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       151 ~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                      .++.+...+   +.+.+|+-.+-.+
T Consensus       107 ~f~aD~~g~---ftk~lgleld~~d  128 (171)
T KOG0541|consen  107 KFVADPAGE---FTKSLGLELDLSD  128 (171)
T ss_pred             EEEecCCCc---eeeeccceeeecc
Confidence            556554443   6777776665443

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.94  E-value=0.02  Score=40.73  Aligned_cols=31  Identities=13%  Similarity=0.231  Sum_probs=27.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHh
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKI  113 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~  113 (183)
                      .++++|+.|+..+||. |....+.+.++..++
T Consensus         4 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~~~~~   34 (154)
T cd03023           4 NGDVTIVEFFDYNCGY-CKKLAPELEKLLKED   34 (154)
T ss_pred             CCCEEEEEEECCCChh-HHHhhHHHHHHHHHC
Confidence            4688999999999998 999999999987764

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.88  E-value=0.044  Score=42.71  Aligned_cols=83  Identities=13%  Similarity=0.094  Sum_probs=48.2

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC---CCCcH-------------HHHHHHHHHh
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP---ERDTP-------------ELVGKYVKEF  146 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp---~~d~~-------------~~~~~~~~~~  146 (183)
                      ||.+|+.|....||+ |+...+.|.++.+    .    ++++..+.+.-   +.+..             ..+.++....
T Consensus       107 ~k~~I~vFtDp~Cpy-Ckkl~~~l~~~~~----~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~  177 (232)
T PRK10877        107 EKHVITVFTDITCGY-CHKLHEQMKDYNA----L----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK  177 (232)
T ss_pred             CCEEEEEEECCCChH-HHHHHHHHHHHhc----C----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence            688899999999998 9999988887643    1    46665553321   11111             1222222211


Q ss_pred             CCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        147 SPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      ..+-.....+-+...++++++|+.-++.
T Consensus       178 ~~~~~~c~~~v~~~~~la~~lgi~gTPt  205 (232)
T PRK10877        178 DVSPASCDVDIADHYALGVQFGVQGTPA  205 (232)
T ss_pred             CCCcccccchHHHhHHHHHHcCCccccE
Confidence            1211111234556677899999876654

>KOG0912|consensus

Probab=95.88  E-value=0.013  Score=47.04  Aligned_cols=46  Identities=13%  Similarity=0.123  Sum_probs=39.2

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ...|+|+|.|.||+- .+..+|.+.+..+.++++  .++-++|+-.+|-
T Consensus        13 ~elvfv~FyAdWCrF-Sq~L~piF~EAa~~~~~e--~P~~kvvwg~VDc   58 (375)
T KOG0912|consen   13 NELVFVNFYADWCRF-SQMLKPIFEEAAAKFKQE--FPEGKVVWGKVDC   58 (375)
T ss_pred             ceEEeeeeehhhchH-HHHHhHHHHHHHHHHHHh--CCCcceEEEEccc
Confidence            578999999999998 999999999999998877  4556777777774

>KOG0191|consensus

Probab=95.72  E-value=0.02  Score=47.85  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG  115 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~  115 (183)
                      .++..+|.|+++||++ |....|...++...++.
T Consensus        46 ~~~~~~v~fyapwc~~-c~~l~~~~~~~~~~l~~   78 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGH-CKKLAPTYKKLAKALKG   78 (383)
T ss_pred             cCCceEEEEECCCCcc-hhhhchHHHHHHHHhcC
Confidence            4678999999999998 99999999999988863

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.69  E-value=0.023  Score=34.91  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ++.|..+|||+ |......|.+.           ++.+..+.+|.
T Consensus         2 v~l~~~~~c~~-c~~~~~~l~~~-----------~i~~~~~~i~~   34 (73)
T cd02976           2 VTVYTKPDCPY-CKATKRFLDER-----------GIPFEEVDVDE   34 (73)
T ss_pred             EEEEeCCCChh-HHHHHHHHHHC-----------CCCeEEEeCCC
Confidence            46688999998 99866655542           56666777773

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG3425|consensus

Probab=95.67  E-value=0.04  Score=38.24  Aligned_cols=43  Identities=19%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             CCCEEEEEEEc--------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGF--------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~--------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|+-+.+.|.+        +|||+ |....|.+.+..+...     +++.||.+-+.
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~ap-----~~~~~v~v~VG   74 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKHAP-----EDVHFVHVYVG   74 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHhCC-----CceEEEEEEec
Confidence            56667677754        69998 9999999999888443     36888888765

>smart00594 UAS UAS domain

Probab=95.41  E-value=0.034  Score=38.77  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=20.5

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEK  105 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~  105 (183)
                      -.+|.++|+|++.||++ |......
T Consensus        25 ~~~K~~lv~~~~~~c~~-c~~~~r~   48 (122)
T smart00594       25 RQRRLLWLYLHSQDSPD-SQVFNRD   48 (122)
T ss_pred             hhcCCEEEEEeCCCCch-HHHHHHH
Confidence            36899999999999998 9987654

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.38  E-value=0.059  Score=38.80  Aligned_cols=50  Identities=16%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      +.+.+-.++++|+.|....||. |....+.+.++.+++-+.   +.+.++...+
T Consensus         5 ~~~G~~~a~~~v~~f~d~~Cp~-C~~~~~~~~~~~~~~i~~---~~v~~~~~~~   54 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFFDFQCPH-CAKFHEELEKLLKKYIDP---GKVKFVFRPV   54 (162)
T ss_dssp             EEES-TTTSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEES
T ss_pred             CeecCCCCCeEEEEEECCCCHh-HHHHHHHHhhhhhhccCC---CceEEEEEEc
Confidence            4455556799999999999998 999999999999998433   2788888876

...

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.30  E-value=0.021  Score=34.36  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++.|+.++||. |......|.+.           ++.+-.+.++
T Consensus         1 V~vy~~~~C~~-C~~~~~~L~~~-----------~i~y~~~dv~   32 (60)
T PF00462_consen    1 VVVYTKPGCPY-CKKAKEFLDEK-----------GIPYEEVDVD   32 (60)
T ss_dssp             EEEEESTTSHH-HHHHHHHHHHT-----------TBEEEEEEGG
T ss_pred             cEEEEcCCCcC-HHHHHHHHHHc-----------CCeeeEcccc
Confidence            46788999998 99977777443           6788888887

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=95.17  E-value=0.024  Score=49.30  Aligned_cols=58  Identities=10%  Similarity=0.126  Sum_probs=37.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHH-HHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMA-AVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~-~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++|+|+|+|.|.||-. |+..-+..- +.+...+-    .++..+=..+-  +++ .+.++.++++|
T Consensus       473 ~~~pVmlDfyAdWCvt-CK~~e~~tfsd~~v~~~~----~~~vlLqaDvT--~~~-p~~~~lLk~~~  531 (569)
T COG4232         473 KAKPVMLDFYADWCVT-CKENEKYTFSDPQVQQAL----QDVVLLQADVT--AND-PAITALLKRLG  531 (569)
T ss_pred             CCCcEEEeeehhHHHH-hHhhhhhccCcHHHHHhc----CCeEEEEeeec--CCC-HHHHHHHHHcC
Confidence            4569999999999997 998876655 33333332    25555544443  233 45667778876

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.05  E-value=0.062  Score=32.71  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++-|..+|||. |+.....|.+.           ++.+..++++
T Consensus         2 v~ly~~~~Cp~-C~~~~~~L~~~-----------~i~~~~~di~   33 (72)
T cd02066           2 VVVFSKSTCPY-CKRAKRLLESL-----------GIEFEEIDIL   33 (72)
T ss_pred             EEEEECCCCHH-HHHHHHHHHHc-----------CCcEEEEECC
Confidence            45677999998 99987777765           4566666666

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.94  E-value=0.19  Score=37.85  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=23.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAA  108 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~  108 (183)
                      .++.+++.|....||. |+...+.|.+
T Consensus        76 ~~~~~i~~f~D~~Cp~-C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFTDPDCPY-CRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEECCCCcc-HHHHHHHHhh
Confidence            4789999999999998 9999998877

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.85  E-value=0.13  Score=32.62  Aligned_cols=47  Identities=13%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ++.|...|||. |...-..|.++..         .++++-|..+   +..+.+++++++.
T Consensus         2 v~~y~~~~Cp~-C~~~~~~l~~~~~---------~~~~~~v~~~---~~~~~~~~~~~~~   48 (82)
T cd03419           2 VVVFSKSYCPY-CKRAKSLLKELGV---------KPAVVELDQH---EDGSEIQDYLQEL   48 (82)
T ss_pred             EEEEEcCCCHH-HHHHHHHHHHcCC---------CcEEEEEeCC---CChHHHHHHHHHH
Confidence            46677999998 9997777777522         3555555555   2334555555443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.82  E-value=0.16  Score=37.12  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=29.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKID  114 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~  114 (183)
                      .++++|+.|+...||. |....+.+.++.+++.
T Consensus        14 ~~~~~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~   45 (178)
T cd03019          14 SGKPEVIEFFSYGCPH-CYNFEPILEAWVKKLP   45 (178)
T ss_pred             CCCcEEEEEECCCCcc-hhhhhHHHHHHHHhCC
Confidence            5789999999999997 9999999999998874

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PHA03050 glutaredoxin; Provisional

Probab=94.80  E-value=0.18  Score=34.53  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAV  109 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l  109 (183)
                      ++-|..+|||+ |......|.+.
T Consensus        15 V~vys~~~CPy-C~~ak~~L~~~   36 (108)
T PHA03050         15 VTIFVKFTCPF-CRNALDILNKF   36 (108)
T ss_pred             EEEEECCCChH-HHHHHHHHHHc
Confidence            45677999998 99877666655

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.70  E-value=0.13  Score=32.14  Aligned_cols=46  Identities=17%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.-|..++||. |......|++.           ++.+-.+.++   ++++..+++.+..+
T Consensus         2 i~ly~~~~Cp~-C~~ak~~L~~~-----------~i~~~~i~i~---~~~~~~~~~~~~~~   47 (75)
T cd03418           2 VEIYTKPNCPY-CVRAKALLDKK-----------GVDYEEIDVD---GDPALREEMINRSG   47 (75)
T ss_pred             EEEEeCCCChH-HHHHHHHHHHC-----------CCcEEEEECC---CCHHHHHHHHHHhC
Confidence            45678999998 99977776652           5666677776   23555555555544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=94.45  E-value=0.11  Score=32.53  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +-|..++||. |......|.+.           ++.+..+.++
T Consensus         4 ~ly~~~~C~~-C~ka~~~L~~~-----------gi~~~~~di~   34 (73)
T cd03027           4 TIYSRLGCED-CTAVRLFLREK-----------GLPYVEINID   34 (73)
T ss_pred             EEEecCCChh-HHHHHHHHHHC-----------CCceEEEECC
Confidence            3466799998 99977777753           5667777776

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=94.41  E-value=0.11  Score=32.86  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .-|+.+|||. |......|++.           ++.+-.+.++   .+++..+++.+..|
T Consensus         2 ~ly~~~~Cp~-C~~a~~~L~~~-----------~i~~~~~di~---~~~~~~~~~~~~~g   46 (79)
T TIGR02181         2 TIYTKPYCPY-CTRAKALLSSK-----------GVTFTEIRVD---GDPALRDEMMQRSG   46 (79)
T ss_pred             EEEecCCChh-HHHHHHHHHHc-----------CCCcEEEEec---CCHHHHHHHHHHhC
Confidence            4578999998 99977777653           4555566666   34455555555443

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=94.25  E-value=0.25  Score=32.15  Aligned_cols=37  Identities=16%  Similarity=0.394  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++-|..+|||. |......|.++..+.      .++.+..+.++
T Consensus         2 V~vys~~~Cp~-C~~ak~~L~~~~~~~------~~i~~~~idi~   38 (86)
T TIGR02183         2 VVIFGRPGCPY-CVRAKQLAEKLAIER------ADFEFRYIDIH   38 (86)
T ss_pred             EEEEeCCCCcc-HHHHHHHHHHhCccc------CCCcEEEEECC
Confidence            46678999998 999888887765332      24566666665

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=94.01  E-value=0.11  Score=35.74  Aligned_cols=51  Identities=10%  Similarity=0.034  Sum_probs=36.7

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      ..|+.++|+. |+.....|.+.           ++.+-.+.+.....+.+.++++++..+.++
T Consensus         3 ~iY~~~~C~~-c~ka~~~L~~~-----------gi~~~~idi~~~~~~~~el~~~~~~~~~~~   53 (115)
T cd03032           3 KLYTSPSCSS-CRKAKQWLEEH-----------QIPFEERNLFKQPLTKEELKEILSLTENGV   53 (115)
T ss_pred             EEEeCCCCHH-HHHHHHHHHHC-----------CCceEEEecCCCcchHHHHHHHHHHhcCCH
Confidence            3567899998 99977777663           456666666544468899999999885443

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=93.89  E-value=0.3  Score=38.45  Aligned_cols=32  Identities=25%  Similarity=0.557  Sum_probs=28.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKID  114 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~  114 (183)
                      .||+.+++..+-|||. |..+.-.|--...++.
T Consensus        57 ~Gk~~v~~igw~gCP~-~A~~sW~L~~ALsrfG   88 (249)
T PF06053_consen   57 NGKPEVIFIGWEGCPY-CAAESWALYIALSRFG   88 (249)
T ss_pred             CCeeEEEEEecccCcc-chhhHHHHHHHHHhcC
Confidence            5899999999999997 9999988888877764

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=93.61  E-value=0.12  Score=36.69  Aligned_cols=52  Identities=10%  Similarity=0.082  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      +.-|..++|+. |+.....|.+-           ++.+-.+.+.....+.+.+.++++..+..+
T Consensus         2 i~iY~~~~C~~-C~ka~~~L~~~-----------gi~~~~idi~~~~~~~~eL~~~l~~~~~g~   53 (131)
T PRK01655          2 VTLFTSPSCTS-CRKAKAWLEEH-----------DIPFTERNIFSSPLTIDEIKQILRMTEDGT   53 (131)
T ss_pred             EEEEeCCCChH-HHHHHHHHHHc-----------CCCcEEeeccCChhhHHHHHHHHHHhcCCH
Confidence            34567999998 99977666553           455556665544467899999999885443

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=93.57  E-value=0.2  Score=33.85  Aligned_cols=49  Identities=18%  Similarity=0.241  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP  148 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~  148 (183)
                      .-|..++|+. |+.....|++.           ++.+-.|.+.....+.+.++++....+.
T Consensus         2 ~iY~~~~C~~-c~ka~~~L~~~-----------~i~~~~idi~~~~~~~~~l~~~~~~~~~   50 (105)
T cd02977           2 TIYGNPNCST-SRKALAWLEEH-----------GIEYEFIDYLKEPPTKEELKELLAKLGL   50 (105)
T ss_pred             EEEECCCCHH-HHHHHHHHHHc-----------CCCcEEEeeccCCCCHHHHHHHHHhcCC
Confidence            4577899998 99987766663           4555555554444688899999888763

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=93.52  E-value=0.1  Score=35.84  Aligned_cols=49  Identities=12%  Similarity=0.318  Sum_probs=35.5

Q ss_pred             EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         89 YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      -|..++||. |+.....|.+-           ++.+-.+.+.....+.+.++++++..+.+
T Consensus         3 iY~~~~C~~-c~ka~~~L~~~-----------~i~~~~idi~~~~~~~~el~~~~~~~~~~   51 (111)
T cd03036           3 FYEYPKCST-CRKAKKWLDEH-----------GVDYTAIDIVEEPPSKEELKKWLEKSGLP   51 (111)
T ss_pred             EEECCCCHH-HHHHHHHHHHc-----------CCceEEecccCCcccHHHHHHHHHHcCCC
Confidence            467899998 99987777663           45566666554446788999998887643

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=93.41  E-value=0.36  Score=32.37  Aligned_cols=33  Identities=15%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ++-|..+|||. |...-..|.+.           ++.+-.+.+|.
T Consensus        10 Vvvysk~~Cp~-C~~ak~~L~~~-----------~i~~~~vdid~   42 (99)
T TIGR02189        10 VVIFSRSSCCM-CHVVKRLLLTL-----------GVNPAVHEIDK   42 (99)
T ss_pred             EEEEECCCCHH-HHHHHHHHHHc-----------CCCCEEEEcCC
Confidence            34566899998 99866655543           35455666663

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=93.25  E-value=0.24  Score=33.64  Aligned_cols=48  Identities=8%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ..|+.++|+. |+.....|.+-           ++.+-.+.+..+.-+.+.+++++++.|
T Consensus         2 ~iy~~~~C~~-crka~~~L~~~-----------~i~~~~~di~~~p~s~~eL~~~l~~~g   49 (105)
T cd03035           2 TLYGIKNCDT-VKKARKWLEAR-----------GVAYTFHDYRKDGLDAATLERWLAKVG   49 (105)
T ss_pred             EEEeCCCCHH-HHHHHHHHHHc-----------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence            4578999997 99977776653           344444444433468899999999877

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=93.17  E-value=0.26  Score=33.71  Aligned_cols=55  Identities=13%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             HHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        106 MAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       106 l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      |.+.+.++++.    ++.+|.|+..    +++.+++|.+..+.+++.+.++...   +-+++|...
T Consensus         2 L~~~~~~l~~~----gv~lv~I~~g----~~~~~~~f~~~~~~p~~ly~D~~~~---lY~~lg~~~   56 (115)
T PF13911_consen    2 LSRRKPELEAA----GVKLVVIGCG----SPEGIEKFCELTGFPFPLYVDPERK---LYKALGLKR   56 (115)
T ss_pred             hhHhHHHHHHc----CCeEEEEEcC----CHHHHHHHHhccCCCCcEEEeCcHH---HHHHhCCcc
Confidence            34455555544    8999999976    6666999999988999977776544   777777664

>PRK12559 transcriptional regulator Spx; Provisional

Probab=93.15  E-value=0.2  Score=35.56  Aligned_cols=51  Identities=8%  Similarity=0.123  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      +..|..++|+. |+.....|.+-           ++.+-.+.+....-+.+.++++++..+.+
T Consensus         2 i~iY~~~~C~~-crkA~~~L~~~-----------gi~~~~~di~~~~~s~~el~~~l~~~~~g   52 (131)
T PRK12559          2 VVLYTTASCAS-CRKAKAWLEEN-----------QIDYTEKNIVSNSMTVDELKSILRLTEEG   52 (131)
T ss_pred             EEEEeCCCChH-HHHHHHHHHHc-----------CCCeEEEEeeCCcCCHHHHHHHHHHcCCC
Confidence            34677999998 99977666553           45555555544346899999999985533

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=93.12  E-value=0.27  Score=32.84  Aligned_cols=49  Identities=14%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ..+.|+|+-..    +|||. |...-..|.+.           ++.+..+.++   +++ .+++.+.+.
T Consensus        10 ~~~~Vvvf~kg~~~~~~Cp~-C~~ak~lL~~~-----------~i~~~~~di~---~~~-~~~~~l~~~   62 (97)
T TIGR00365        10 KENPVVLYMKGTPQFPQCGF-SARAVQILKAC-----------GVPFAYVNVL---EDP-EIRQGIKEY   62 (97)
T ss_pred             ccCCEEEEEccCCCCCCCch-HHHHHHHHHHc-----------CCCEEEEECC---CCH-HHHHHHHHH
Confidence            44566666543    79998 99876666554           4566666665   233 344445443

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=92.74  E-value=0.28  Score=36.15  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHH------HHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELE------KMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~------~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      +..+.-.+|+++|.+.++||.. |.....      .+.++.++          .||.|-+|.  |....+....
T Consensus        30 ~~~Ak~e~KpIfl~ig~~~C~w-ChvM~~esf~d~eVa~~lN~----------~FI~VkvDr--ee~Pdid~~y   90 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIGYSWCHW-CHVMERESFSDPEVAEYLNR----------NFIPVKVDR--EERPDIDKIY   90 (163)
T ss_dssp             HHHHHHHT--EEEEEE-TT-HH-HHHHHHHTTT-HHHHHHHHH----------H-EEEEEET--TT-HHHHHHH
T ss_pred             HHHHHhcCCcEEEEEEecCCcc-hhhhcccCcCCHHHHHHHhC----------CEEEEEecc--ccCccHHHHH
Confidence            3333346899999999999997 997543      33343332          578888884  4444444443

; PDB: 3IRA_A.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.44  E-value=0.33  Score=31.85  Aligned_cols=49  Identities=10%  Similarity=0.103  Sum_probs=28.5

Q ss_pred             CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ++++|+|+--.    +|||. |......|.+.           ++.+-.+.++.   + ..+++.+.+.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~-C~~ak~~L~~~-----------~i~y~~idv~~---~-~~~~~~l~~~   58 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGF-SRKVVQILNQL-----------GVDFGTFDILE---D-EEVRQGLKEY   58 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcH-HHHHHHHHHHc-----------CCCeEEEEcCC---C-HHHHHHHHHH
Confidence            45666665432    69998 99866666554           45556666652   2 3344454444

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=92.26  E-value=0.3  Score=33.71  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         89 YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      -|+.++||. |+.....|.+-           ++.+..+.+.....+.+.+.++++..|..+
T Consensus         3 iY~~~~C~~-c~ka~~~L~~~-----------~i~~~~idi~~~~~~~~el~~l~~~~~~~~   52 (117)
T TIGR01617         3 VYGSPNCTT-CKKARRWLEAN-----------GIEYQFIDIGEDGPTREELLDILSLLEDGI   52 (117)
T ss_pred             EEeCCCCHH-HHHHHHHHHHc-----------CCceEEEecCCChhhHHHHHHHHHHcCCCH
Confidence            467899998 99988777762           566666666544467888999999887433

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=91.77  E-value=0.95  Score=29.06  Aligned_cols=46  Identities=24%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      +..|.-++||. |...-..|.+.           ++.+.-|.++.  +..+..+++++..
T Consensus         3 v~iyt~~~CPy-C~~ak~~L~~~-----------g~~~~~i~~~~--~~~~~~~~~~~~~   48 (80)
T COG0695           3 VTIYTKPGCPY-CKRAKRLLDRK-----------GVDYEEIDVDD--DEPEEAREMVKRG   48 (80)
T ss_pred             EEEEECCCCch-HHHHHHHHHHc-----------CCCcEEEEecC--CcHHHHHHHHHHh
Confidence            45566788998 99977776632           67777777763  3446777777777

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=91.73  E-value=0.53  Score=29.30  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=23.3

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .-|..++||. |......|.+.           ++.+-.+.++
T Consensus         2 ~ly~~~~Cp~-C~~ak~~L~~~-----------~i~~~~~di~   32 (72)
T TIGR02194         2 TVYSKNNCVQ-CKMTKKALEEH-----------GIAFEEINID   32 (72)
T ss_pred             EEEeCCCCHH-HHHHHHHHHHC-----------CCceEEEECC
Confidence            4577899998 99988777642           5667677776

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10638 glutaredoxin 3; Provisional

Probab=91.45  E-value=0.46  Score=30.47  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.-|..+|||. |......|.+.           ++.+..+.+|.   ..+...++.+..+
T Consensus         4 v~ly~~~~Cp~-C~~a~~~L~~~-----------gi~y~~~dv~~---~~~~~~~l~~~~g   49 (83)
T PRK10638          4 VEIYTKATCPF-CHRAKALLNSK-----------GVSFQEIPIDG---DAAKREEMIKRSG   49 (83)
T ss_pred             EEEEECCCChh-HHHHHHHHHHc-----------CCCcEEEECCC---CHHHHHHHHHHhC
Confidence            34566899998 99977766653           46666677763   3333444554444

>PRK10329 glutaredoxin-like protein; Provisional

Probab=91.36  E-value=0.84  Score=29.37  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.-|..+|||. |......|.+.           ++.+-.|.+|
T Consensus         3 v~lYt~~~Cp~-C~~ak~~L~~~-----------gI~~~~idi~   34 (81)
T PRK10329          3 ITIYTRNDCVQ-CHATKRAMESR-----------GFDFEMINVD   34 (81)
T ss_pred             EEEEeCCCCHh-HHHHHHHHHHC-----------CCceEEEECC
Confidence            45677899998 99977766431           6788788877

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=91.23  E-value=0.52  Score=35.91  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDG  115 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~  115 (183)
                      .|++.|+.|....||. |....+.+   ..+.+.+.+
T Consensus        36 ~~~~~VvEffdy~Cph-C~~~~~~l~~~~~~~~~~~~   71 (207)
T PRK10954         36 AGEPQVLEFFSFYCPH-CYQFEEVYHVSDNVKKKLPE   71 (207)
T ss_pred             CCCCeEEEEeCCCCcc-HHHhcccccchHHHHHhCCC
Confidence            4688899999999997 99988765   677777643

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=91.11  E-value=0.56  Score=36.98  Aligned_cols=28  Identities=18%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHH
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVN  111 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~  111 (183)
                      +|.+|+.|.-..||. |+.....+.++.+
T Consensus       117 ak~~I~vFtDp~Cpy-C~kl~~~l~~~~~  144 (251)
T PRK11657        117 APRIVYVFADPNCPY-CKQFWQQARPWVD  144 (251)
T ss_pred             CCeEEEEEECCCChh-HHHHHHHHHHHhh
Confidence            577899999999998 9999999887755

>KOG0911|consensus

Probab=90.96  E-value=0.23  Score=38.23  Aligned_cols=60  Identities=15%  Similarity=0.162  Sum_probs=43.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeE
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFI  151 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~  151 (183)
                      +++.++++||+.||.+ |......+..+.+..  +    +++++.+..|   ..++-...+.-+-.+-+.
T Consensus        16 ~~~~~~~~f~a~wa~~-~~q~~~v~~~~~~~~--~----~~~~~k~~a~---~~~eis~~~~v~~vp~~~   75 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVV-QKQMDQVFDHLAEYF--K----NAQFLKLEAE---EFPEISNLIAVEAVPYFV   75 (227)
T ss_pred             ccchhhhhhhhhhhhh-hhhHHHHHHHHHHhh--h----hheeeeehhh---hhhHHHHHHHHhcCceee
Confidence            7889999999999997 999777777777765  2    6777777766   455655555555444333

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=90.67  E-value=0.63  Score=33.00  Aligned_cols=51  Identities=12%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      .-|..++|+. |+.....|.+-           ++.+-.+.+....-+.+.++.+++..+..|
T Consensus         3 ~iY~~~~C~~-crkA~~~L~~~-----------~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~   53 (132)
T PRK13344          3 KIYTISSCTS-CKKAKTWLNAH-----------QLSYKEQNLGKEPLTKEEILAILTKTENGI   53 (132)
T ss_pred             EEEeCCCCHH-HHHHHHHHHHc-----------CCCeEEEECCCCCCCHHHHHHHHHHhCCCH
Confidence            3467899997 99966555542           555666665543468899999999987554

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=90.48  E-value=0.61  Score=29.65  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+.-++-|..+|||. |......|.+.           ++.+..+.++.
T Consensus         6 ~~~~V~ly~~~~Cp~-C~~ak~~L~~~-----------gi~y~~idi~~   42 (79)
T TIGR02190         6 KPESVVVFTKPGCPF-CAKAKATLKEK-----------GYDFEEIPLGN   42 (79)
T ss_pred             CCCCEEEEECCCCHh-HHHHHHHHHHc-----------CCCcEEEECCC
Confidence            334456778999998 99977777532           56666777763

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=90.19  E-value=1  Score=27.88  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++-|..+|||. |......|.+.           ++.+..+.++
T Consensus         3 v~lys~~~Cp~-C~~ak~~L~~~-----------~i~~~~~~v~   34 (72)
T cd03029           3 VSLFTKPGCPF-CARAKAALQEN-----------GISYEEIPLG   34 (72)
T ss_pred             EEEEECCCCHH-HHHHHHHHHHc-----------CCCcEEEECC
Confidence            45567899998 99986666642           5666667766

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG1752|consensus

Probab=89.01  E-value=2.4  Score=28.83  Aligned_cols=51  Identities=18%  Similarity=0.471  Sum_probs=31.0

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .++| |-|--+|||. |...    +++..++       ++....+.+|...+ ..++++++.+..
T Consensus        13 ~~~V-VifSKs~C~~-c~~~----k~ll~~~-------~v~~~vvELD~~~~-g~eiq~~l~~~t   63 (104)
T KOG1752|consen   13 ENPV-VIFSKSSCPY-CHRA----KELLSDL-------GVNPKVVELDEDED-GSEIQKALKKLT   63 (104)
T ss_pred             cCCE-EEEECCcCch-HHHH----HHHHHhC-------CCCCEEEEccCCCC-cHHHHHHHHHhc
Confidence            3444 4466799998 9983    3333332       45555666665433 347777777664

>KOG0913|consensus

Probab=88.58  E-value=0.14  Score=39.66  Aligned_cols=47  Identities=21%  Similarity=0.521  Sum_probs=33.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      +|.|. |.|.++|||. |..-.|++.++..--.+-  .-++..|-|+++|.
T Consensus        39 ~gewm-i~~~ap~~ps-c~~~~~~~~~~a~~s~dL--~v~va~VDvt~npg   85 (248)
T KOG0913|consen   39 TGEWM-IEFGAPWCPS-CSDLIPHLENFATVSLDL--GVKVAKVDVTTNPG   85 (248)
T ss_pred             chHHH-HHhcCCCCcc-ccchHHHHhccCCccCCC--ceeEEEEEEEeccc
Confidence            56664 6788999997 999999999987643332  33566666676654

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=87.21  E-value=1.1  Score=28.66  Aligned_cols=38  Identities=13%  Similarity=0.212  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      |..|+...||. |....+.+.++.....     +++.+....+.
T Consensus         1 i~~f~d~~Cp~-C~~~~~~l~~~~~~~~-----~~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDPLCPY-CYLFEPELEKLLYADD-----GGVRVVYRPFP   38 (98)
T ss_pred             CeEEECCCCHh-HHhhhHHHHHHHhhcC-----CcEEEEEeccc
Confidence            46788999998 9999999999974332     25666655443

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG0191|consensus

Probab=87.18  E-value=1.5  Score=36.68  Aligned_cols=44  Identities=14%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ....++.|.+.||+. |+...|...++...++..   ..+.+..+..+
T Consensus       162 ~~~~lv~f~aPwc~~-ck~l~~~~~~~a~~~~~~---~~v~~~~~d~~  205 (383)
T KOG0191|consen  162 DADWLVEFYAPWCGH-CKKLAPEWEKLAKLLKSK---ENVELGKIDAT  205 (383)
T ss_pred             CcceEEEEeccccHH-hhhcChHHHHHHHHhccC---cceEEEeeccc
Confidence            356788889999997 999999999999988642   36777766544

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=86.90  E-value=4  Score=25.63  Aligned_cols=22  Identities=18%  Similarity=0.529  Sum_probs=18.4

Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHh
Q psy17592         91 GFTHCPDICPDELEKMAAVVNKI  113 (183)
Q Consensus        91 ~~t~C~~~C~~~~~~l~~l~~~~  113 (183)
                      ..++||. |+.....++++..++
T Consensus         6 ~~~~C~~-C~~~~~~~~~~~~~~   27 (76)
T PF13192_consen    6 FSPGCPY-CPELVQLLKEAAEEL   27 (76)
T ss_dssp             ECSSCTT-HHHHHHHHHHHHHHT
T ss_pred             eCCCCCC-cHHHHHHHHHHHHhc
Confidence            4777998 999888888888875

...

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=86.87  E-value=1.2  Score=30.91  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL  153 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l  153 (183)
                      +--|+.+.|.. |+.....|++-         +-..+++-+.-+|  -+.+.+.++++..|..|..+
T Consensus         3 itiy~~p~C~t-~rka~~~L~~~---------gi~~~~~~y~~~~--~s~~eL~~~l~~~g~~~~~l   57 (117)
T COG1393           3 ITIYGNPNCST-CRKALAWLEEH---------GIEYTFIDYLKTP--PSREELKKILSKLGDGVEEL   57 (117)
T ss_pred             EEEEeCCCChH-HHHHHHHHHHc---------CCCcEEEEeecCC--CCHHHHHHHHHHcCccHHHH
Confidence            34578999997 99987777664         2234555555554  58899999999988666444

>PRK10824 glutaredoxin-4; Provisional

Probab=86.18  E-value=1.7  Score=30.15  Aligned_cols=49  Identities=10%  Similarity=0.213  Sum_probs=29.7

Q ss_pred             CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ..+.|+|+--.    +|||. |......|.++           ++.+-.+.++   +++ .+++.+++.
T Consensus        13 ~~~~Vvvf~Kg~~~~p~Cpy-c~~ak~lL~~~-----------~i~~~~idi~---~d~-~~~~~l~~~   65 (115)
T PRK10824         13 AENPILLYMKGSPKLPSCGF-SAQAVQALSAC-----------GERFAYVDIL---QNP-DIRAELPKY   65 (115)
T ss_pred             hcCCEEEEECCCCCCCCCch-HHHHHHHHHHc-----------CCCceEEEec---CCH-HHHHHHHHH
Confidence            34566666544    49998 99977766664           2344445555   233 466666665

>KOG4277|consensus

Probab=86.04  E-value=0.15  Score=41.07  Aligned_cols=32  Identities=13%  Similarity=0.163  Sum_probs=26.0

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ  116 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~  116 (183)
                      ..-+|.|+|+||.. |+...|...++-..+++-
T Consensus        44 diW~VdFYAPWC~H-CKkLePiWdeVG~elkdi   75 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAH-CKKLEPIWDEVGHELKDI   75 (468)
T ss_pred             CeEEEEeechhhhh-cccccchhHHhCcchhhc
Confidence            45689999999997 999999988886665543

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.70  E-value=3.6  Score=31.84  Aligned_cols=45  Identities=13%  Similarity=0.143  Sum_probs=34.5

Q ss_pred             cCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592         70 DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG  115 (183)
Q Consensus        70 d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~  115 (183)
                      ..++..+...+..++++++.|.-..||. |...++.|.+.+....+
T Consensus        71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~-C~~~~~~l~~~~i~~~~  115 (244)
T COG1651          71 TPDGKDVVLGNPYAPVTVVEFFDYTCPY-CKEAFPELKKKYIDDGK  115 (244)
T ss_pred             cCCCCcccccCCCCCceEEEEecCcCcc-HHHHHHHHHHHhhhcCC
Confidence            3455555555666789999999999998 99999999996665543

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.70  E-value=1.9  Score=27.43  Aligned_cols=44  Identities=18%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      +-|++..||. |......|+++.-         +..+|-|.     .+-..+++|++-.
T Consensus         5 ~lfgsn~Cpd-ca~a~eyl~rl~v---------~yd~VeIt-----~Sm~NlKrFl~lR   48 (85)
T COG4545           5 KLFGSNLCPD-CAPAVEYLERLNV---------DYDFVEIT-----ESMANLKRFLHLR   48 (85)
T ss_pred             eeeccccCcc-hHHHHHHHHHcCC---------Cceeeehh-----hhhhhHHHHHhhh
Confidence            4588999998 9998888887733         34555553     4567777777643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=85.28  E-value=3.1  Score=36.63  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++..+-.|..++||. |+..-..++++....      +++..-.|...
T Consensus       475 ~~~~~i~v~~~~~C~~-Cp~~~~~~~~~~~~~------~~i~~~~i~~~  516 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTL-CPDVVLAAQRIASLN------PNVEAEMIDVS  516 (555)
T ss_pred             CCCeEEEEEECCCCCC-cHHHHHHHHHHHHhC------CCceEEEEECc
Confidence            3445566788999998 998888887777653      35776666554

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=84.76  E-value=3.7  Score=32.74  Aligned_cols=42  Identities=12%  Similarity=0.201  Sum_probs=33.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++.+|||+|+-..++. |...-..|..|+.+|.      .+.|+-|...
T Consensus       145 ~~~~VVVHiY~~~~~~-C~~mn~~L~~LA~kyp------~vKFvkI~a~  186 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPR-CEIMNSCLECLARKYP------EVKFVKIRAS  186 (265)
T ss_dssp             TT-EEEEEEE-TTSCC-HHHHHHHHHHHHHH-T------TSEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCch-HHHHHHHHHHHHHhCC------ceEEEEEehh
Confidence            4568999999999997 9999999999999975      6888887654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=83.93  E-value=3.7  Score=35.77  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      +.++.-+..|...+||+ |+.....++++...      .+++..-.|...   +.++...+|
T Consensus       114 ~~~~~~i~~fv~~~Cp~-Cp~~v~~~~~~a~~------~~~i~~~~id~~---~~~~~~~~~  165 (517)
T PRK15317        114 LDGDFHFETYVSLSCHN-CPDVVQALNLMAVL------NPNITHTMIDGA---LFQDEVEAR  165 (517)
T ss_pred             cCCCeEEEEEEcCCCCC-cHHHHHHHHHHHHh------CCCceEEEEEch---hCHhHHHhc
Confidence            34555688899999998 99988888888775      236666666332   455555544

>PRK10026 arsenate reductase; Provisional

Probab=83.84  E-value=1.7  Score=31.23  Aligned_cols=50  Identities=16%  Similarity=0.192  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP  148 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~  148 (183)
                      +..++.+.|.. |+..+..|++-         +-.++++-+--+|  -+.+.++.+++..+.
T Consensus         4 i~iY~~p~Cst-~RKA~~wL~~~---------gi~~~~~d~~~~p--pt~~eL~~~l~~~g~   53 (141)
T PRK10026          4 ITIYHNPACGT-SRNTLEMIRNS---------GTEPTIIHYLETP--PTRDELVKLIADMGI   53 (141)
T ss_pred             EEEEeCCCCHH-HHHHHHHHHHC---------CCCcEEEeeeCCC--cCHHHHHHHHHhCCC
Confidence            44577999997 99988777764         1134444444443  588999999998874

>KOG0914|consensus

Probab=82.37  E-value=3.4  Score=32.03  Aligned_cols=44  Identities=20%  Similarity=0.110  Sum_probs=33.6

Q ss_pred             CCCeeecCccCC--CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592         72 NNKPVKSEDFLG--KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ  116 (183)
Q Consensus        72 ~G~~v~l~~~~g--k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~  116 (183)
                      +++......-++  +.=||.|++.|.|. |....|.+.++..+|...
T Consensus       131 ~~q~~deel~rnk~t~WlIeFfa~ws~~-Cv~~spvfaeLS~kyn~~  176 (265)
T KOG0914|consen  131 NMQLEDEELDRNKRTYWLIEFFACWSPK-CVRFSPVFAELSIKYNNN  176 (265)
T ss_pred             chhhHHHHhccCCceEEEEEEEeecChh-hcccccccHHHHHHhCCC
Confidence            455544333344  34589999999998 999999999999998765

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=82.11  E-value=11  Score=30.08  Aligned_cols=78  Identities=19%  Similarity=0.060  Sum_probs=47.3

Q ss_pred             CCCeEEEcCCCCeeecCccCC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .|-|+++|.+|+++-.+.-.| +.+-++|     -. =......|.++..+-.+-  +.+++|+.|++|       .+-+
T Consensus        82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~-----s~-qedA~afL~~lk~~~p~l--~~~~kV~pvsL~-------~vYk  146 (270)
T TIGR00995        82 TSVFTVSNAQNEFVLASDNDGEKSIGLLC-----FR-QEDAEAFLAQLRKRKPEV--GSQAKVVPITLD-------QVYK  146 (270)
T ss_pred             CceEEEEcCCCCeEEEECCCCCceEEEEE-----CC-HHHHHHHHHHHHhhCccc--cCCceEEEEEHH-------HHHH
Confidence            389999999999887665545 5555433     22 111234555655443322  457999999987       2223


Q ss_pred             HHHHhCCCeEEecCC
Q psy17592        142 YVKEFSPKFIGLTGT  156 (183)
Q Consensus       142 ~~~~~~~~~~~l~~~  156 (183)
                      . +..+..|.++.+.
T Consensus       147 l-~~e~l~F~fiP~~  160 (270)
T TIGR00995       147 L-KVEGIGFRFLPDP  160 (270)
T ss_pred             H-hhcCccEEEeCCH
Confidence            3 3345778887654

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>KOG4498|consensus

Probab=81.90  E-value=2.8  Score=31.54  Aligned_cols=55  Identities=15%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             EcCCCCeeecCcc-C-CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592         69 VDCNNKPVKSEDF-L-GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS  128 (183)
Q Consensus        69 ~d~~G~~v~l~~~-~-gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is  128 (183)
                      .|..|+.+...++ + ++.|+...--..|- +|+.+...|..+..-+++.    ++..+.|.
T Consensus        35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCv-lCR~~aadLa~l~~~ld~~----Gv~Li~vg   91 (197)
T KOG4498|consen   35 LDSRGESVPVTSLFKERSAVVAFVRRPGCV-LCREEAADLASLKDLLDEL----GVVLIAVG   91 (197)
T ss_pred             hhhcCceeehHHhhhcCCeEEEEeccCcEE-EeHHHHHHHHHHHHHHHHh----CCEEEEEe
Confidence            5778999998887 3 45677777789999 5999999999996666655    77777775

>PRK01018 50S ribosomal protein L30e; Reviewed

Probab=81.75  E-value=9.8  Score=25.46  Aligned_cols=42  Identities=12%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHH
Q psy17592        121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA  162 (183)
Q Consensus       121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (183)
                      ...+|.|+.|-..++.+.+..++++++.++..+.++.+++..
T Consensus        32 kaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~   73 (99)
T PRK01018         32 KAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGT   73 (99)
T ss_pred             CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHH
Confidence            688889988866677888888899999888776677777443

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=81.27  E-value=4.4  Score=27.68  Aligned_cols=50  Identities=10%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      ..|..+.|.. |+..+..|++-           ++.+..+.+-...-+.+++..+++..+.+
T Consensus         2 ~iy~~~~C~t-~rkA~~~L~~~-----------~i~~~~~di~~~~~t~~el~~~l~~~~~~   51 (112)
T cd03034           2 TIYHNPRCSK-SRNALALLEEA-----------GIEPEIVEYLKTPPTAAELRELLAKLGIS   51 (112)
T ss_pred             EEEECCCCHH-HHHHHHHHHHC-----------CCCeEEEecccCCcCHHHHHHHHHHcCCC
Confidence            3567899997 99977666653           44444554432235889999999988743

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>PRK10853 putative reductase; Provisional

Probab=81.21  E-value=4.2  Score=28.18  Aligned_cols=49  Identities=16%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.-|+.+.|.. |+..+..|.+-           ++.+-.+.+-...-+.+.+++++++.|
T Consensus         2 i~iy~~~~C~t-~rkA~~~L~~~-----------~i~~~~~d~~k~p~s~~eL~~~l~~~g   50 (118)
T PRK10853          2 VTLYGIKNCDT-IKKARRWLEAQ-----------GIDYRFHDYRVDGLDSELLQGFIDELG   50 (118)
T ss_pred             EEEEcCCCCHH-HHHHHHHHHHc-----------CCCcEEeehccCCcCHHHHHHHHHHcC
Confidence            34577899997 99987777653           455555544322358899999998876

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=80.69  E-value=5.3  Score=27.37  Aligned_cols=49  Identities=10%  Similarity=0.156  Sum_probs=34.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP  148 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~  148 (183)
                      ..|..+.|.. |+.....|++-           ++.+..+.+-...-+.++++.+++..|.
T Consensus         2 ~iy~~~~C~t-~rkA~~~L~~~-----------~i~~~~~di~~~p~t~~el~~~l~~~g~   50 (114)
T TIGR00014         2 TIYHNPRCSK-SRNTLALLEDK-----------GIEPEVVKYLKNPPTKSELEAIFAKLGL   50 (114)
T ss_pred             EEEECCCCHH-HHHHHHHHHHC-----------CCCeEEEeccCCCcCHHHHHHHHHHcCC
Confidence            3567899997 99987777763           3444444443333588999999998764

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>PTZ00062 glutaredoxin; Provisional

Probab=80.40  E-value=3.8  Score=31.34  Aligned_cols=49  Identities=6%  Similarity=0.062  Sum_probs=29.4

Q ss_pred             CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ..++|+|+--.    ++||. |+.....|.+.           ++.+..+.++   ++ +.+++.++++
T Consensus       111 ~~~~Vvvf~Kg~~~~p~C~~-C~~~k~~L~~~-----------~i~y~~~DI~---~d-~~~~~~l~~~  163 (204)
T PTZ00062        111 RNHKILLFMKGSKTFPFCRF-SNAVVNMLNSS-----------GVKYETYNIF---ED-PDLREELKVY  163 (204)
T ss_pred             hcCCEEEEEccCCCCCCChh-HHHHHHHHHHc-----------CCCEEEEEcC---CC-HHHHHHHHHH
Confidence            45667776654    57887 88765555543           4666666666   22 3455556555

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=80.18  E-value=5  Score=27.66  Aligned_cols=29  Identities=14%  Similarity=0.201  Sum_probs=20.4

Q ss_pred             cCCCEEEEEEEcC----CCCCCcHHHH--HHHHHHH
Q psy17592         81 FLGKWALIYFGFT----HCPDICPDEL--EKMAAVV  110 (183)
Q Consensus        81 ~~gk~vll~f~~t----~C~~~C~~~~--~~l~~l~  110 (183)
                      -.+|+++|++...    ||.. |+..+  |.+.++.
T Consensus        15 ~e~K~llVylhs~~~~~~~~f-c~~~l~~~~v~~~l   49 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEF-CRNTLCAPEVIEYI   49 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHH-HHHHcCCHHHHHHH
Confidence            3589999999999    6665 76654  4444444

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK05583 ribosomal protein L7Ae family protein; Provisional

Probab=80.10  E-value=11  Score=25.54  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592        121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR  168 (183)
Q Consensus       121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  168 (183)
                      .+.+|.++.|-..++.+.+.++++.++.++..+ ++.++   +...+|
T Consensus        33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~e---Lg~a~G   76 (104)
T PRK05583         33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKEE---LGNAIG   76 (104)
T ss_pred             CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHHH---HHHHhC
Confidence            678888888877778888888888888777665 55555   444444

>PTZ00106 60S ribosomal protein L30; Provisional

Probab=80.03  E-value=10  Score=25.85  Aligned_cols=42  Identities=10%  Similarity=0.026  Sum_probs=32.1

Q ss_pred             CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHH
Q psy17592        121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA  162 (183)
Q Consensus       121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (183)
                      .+.+|.|+-|-+..+.+.+..+++.++.++....++.+++..
T Consensus        41 kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~   82 (108)
T PTZ00106         41 KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGT   82 (108)
T ss_pred             CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHH
Confidence            688888888876667788888888888888766677776433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2gqk_A	173	Solution Structure Of Human Ni(Ii)-Sco1 Length = 17		3e-42
2ggt_A	164	Crystal Structure Of Human Sco1 Complexed With Nick		2e-41
2hrf_A	173	Solution Structure Of Cu(i) P174l Hsco1 Length = 17		3e-41
2rli_A	171	Solution Structure Of Cu(i) Human Sco2 Length = 171		8e-40
1wp0_A	165	Human Sco1 Length = 165		1e-39
2b7j_A	200	Crystal Structure Of Yeast Sco1 With Copper Bound L		5e-30
2k6v_A	172	Solution Structures Of Apo Sco1 Protein From Thermu		2e-17
4hde_A	170	The Crystal Structure Of A Sco1SENC FAMILY LIPOPROT		8e-04

>pdb|2GQK|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1 Length = 173

Iteration: 1
 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 94/126 (74%)
Query: 58  GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
           GK  +GG F L     +    +D+LG+W LIYFGFTHCPD+CP+ELEKM  VV++ID   
Sbjct: 4   GKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT 63
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
            +P++TP+FIS+DPERDT E +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD
Sbjct: 64  TLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKD 123
Query: 178 KDSDYI 183
           +D DYI
Sbjct: 124 EDEDYI 129

>pdb|2GGT|A Chain A, Crystal Structure Of Human Sco1 Complexed With Nickel. Length = 164

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 92/122 (75%)
Query: 62  IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
           +GG F L     +    +D+LG+W LIYFGFTHCPD+CP+ELEKM  VV++ID    +P+
Sbjct: 2   LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD 61
Query: 122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
           +TP+FIS+DPERDT E +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD+D D
Sbjct: 62  LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDED 121
Query: 182 YI 183
           YI
Sbjct: 122 YI 123

>pdb|2HRF|A Chain A, Solution Structure Of Cu(i) P174l Hsco1 Length = 173

Iteration: 1
 Score =  164 bits (414), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 93/126 (73%)
Query: 58  GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
           GK  +GG F L     +    +D+LG+W LIYFGFTHCPD+C +ELEKM  VV++ID   
Sbjct: 4   GKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCLEELEKMIQVVDEIDSIT 63
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
            +P++TP+FIS+DPERDT E +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD
Sbjct: 64  TLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKD 123
Query: 178 KDSDYI 183
           +D DYI
Sbjct: 124 EDEDYI 129

>pdb|2RLI|A Chain A, Solution Structure Of Cu(i) Human Sco2 Length = 171

Iteration: 1
 Score =  159 bits (402), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 91/126 (72%)
Query: 58  GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
           G     G F L+D   +     DF G+W L+YFGFTHCPDICPDELEK+  VV +++ +P
Sbjct: 1   GSFTGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEP 60
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
            +P + P+FI+VDPERD  E + +YV++F P+ +GLTG+ +QVA A  +YRVY++AGPKD
Sbjct: 61  GLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKD 120
Query: 178 KDSDYI 183
           +D DYI
Sbjct: 121 EDQDYI 126

>pdb|1WP0|A Chain A, Human Sco1 Length = 165

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 89/120 (74%)
Query: 64  GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
           G F L     +    +D+LG+W LIYFGFTHCPD+CP+ELEK   VV++ID    +P++T
Sbjct: 2   GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKXIQVVDEIDSITTLPDLT 61
Query: 124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           P+FIS+DPERDT E +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD+D DYI
Sbjct: 62  PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 121

>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound Length = 200

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Query: 50  EKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAV 109
           E E  R  GK ++GG F L D        ++ LGK+++IYFGF++CPDICPDEL+K+   
Sbjct: 8   EAEANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLW 67
Query: 110 VNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
           +N +  +  +  + P+FI+ DP RD+P ++ +Y+ +F P  +GLTGT ++V  ACK YRV
Sbjct: 68  LNTLSSKYGI-TLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRV 126
Query: 170 YFSAGPKDK-DSDYI 183
           YFS  P  K   DY+
Sbjct: 127 YFSTPPNVKPGQDYL 141

>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus Thermophilus Length = 172

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 75  PVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD 134
           PV+   F  K  L++FGFT CPD+CP  L  +     K+  +     +  IF+SVDPERD
Sbjct: 27  PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQ-ERVQVIFVSVDPERD 85
Query: 135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
            PE+  +Y K F P F+GL+G+ E V  A + + V++         +Y+
Sbjct: 86  PPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYL 134

>pdb|4HDE|A Chain A, The Crystal Structure Of A Sco1SENC FAMILY LIPOPROTEIN FROM BACILLUS Anthracis Str. Ames Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F+  + + KP  ++D  GK  +  F FT+C  +CP      A +  +   +    ++  +
Sbjct: 15  FQFTNQDGKPFGTKDLKGKVWVADFXFTNCQTVCPPXTANXAKL--QKXAKEEKLDVQFV 72
Query: 126 FISVDPERDTPELVGKYVKEFS 147
             SVDP+ D PE +  ++++F+
Sbjct: 73  SFSVDPDLDKPENLKAFIQKFT 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	8e-71
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	2e-67
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	2e-65
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	2e-62
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	2e-46
3me7_A	170	Putative uncharacterized protein; electron transfe	9e-42
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	3e-06
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	5e-06
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	6e-06
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	1e-05
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-05
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	4e-05
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	5e-05
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	7e-05
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	7e-05
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	8e-05
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	1e-04
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	1e-04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	2e-04
2lrt_A	152	Uncharacterized protein; structural genomics, thio	2e-04
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	4e-04
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	4e-04
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	6e-04

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171

 Score =  211 bits (538), Expect = 8e-71
 Identities = 66/126 (52%), Positives = 91/126 (72%)

Query: 58  GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
           G     G F L+D   +     DF G+W L+YFGFTHCPDICPDELEK+  VV +++ +P
Sbjct: 1   GSFTGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEP 60

Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
            +P + P+FI+VDPERD  E + +YV++F P+ +GLTG+ +QVA A  +YRVY++AGPKD
Sbjct: 61  GLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKD 120

Query: 178 KDSDYI 183
           +D DYI
Sbjct: 121 EDQDYI 126

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164

 Score =  202 bits (516), Expect = 2e-67
 Identities = 72/122 (59%), Positives = 92/122 (75%)

Query: 62  IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
           +GG F L     +    +D+LG+W LIYFGFTHCPD+CP+ELEKM  VV++ID    +P+
Sbjct: 2   LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD 61

Query: 122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
           +TP+FIS+DPERDT E +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD+D D
Sbjct: 62  LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDED 121

Query: 182 YI 183
           YI
Sbjct: 122 YI 123

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200

 Score =  198 bits (505), Expect = 2e-65
 Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 2/142 (1%)

Query: 43  KAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDE 102
           +  +   E E  R  GK ++GG F L D        ++ LGK+++IYFGF++CPDICPDE
Sbjct: 1   RRLETQKEAEANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDE 60

Query: 103 LEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA 162
           L+K+   +N +  +     + P+FI+ DP RD+P ++ +Y+ +F P  +GLTGT ++V  
Sbjct: 61  LDKLGLWLNTLSSKYG-ITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 119

Query: 163 ACKAYRVYFSAGPKDK-DSDYI 183
           ACK YRVYFS  P  K   DY+
Sbjct: 120 ACKKYRVYFSTPPNVKPGQDYL 141

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172

 Score =  189 bits (483), Expect = 2e-62
 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 61  AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVP 120
                F L      PV+   F  K  L++FGFT CPD+CP  L  +     K+  +    
Sbjct: 14  PKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQ-E 71

Query: 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDS 180
            +  IF+SVDPERD PE+  +Y K F P F+GL+G+ E V  A + + V++         
Sbjct: 72  RVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPG 131

Query: 181 DYI 183
           +Y+
Sbjct: 132 EYL 134

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174

 Score =  149 bits (378), Expect = 2e-46
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F   + + K V  E   G+  L  F FT+C  ICP     M  +  K+  +    ++  I
Sbjct: 16  FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAEN--IDVRII 73

Query: 126 FISVDPERDTPELVGKYVKEFSPKFIG---LTGTV--EQVAAACKAYRVYFSAGPKDKDS 180
             SVDPE D P+ + K+   +   F     LTG    E    A K+++       K  + 
Sbjct: 74  SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIV----KKPEG 129

Query: 181 DYI 183
           +  
Sbjct: 130 EDQ 132

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170

 Score =  137 bits (346), Expect = 9e-42
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 56  NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
           +LG   + G   LVD      + ++  GK  ++   +THC   CP   + +  V+ K+  
Sbjct: 2   SLGT-YVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLG- 59

Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIG---LTG-TVEQVAAACKAYRVYF 171
                +   I  + DP +DT E + ++ KE+     G   +   T E +     A    F
Sbjct: 60  -TPGKDFWVITFTFDP-KDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRF 117

Query: 172 SAGPKD 177
                D
Sbjct: 118 MTAGND 123

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 9/89 (10%)

Query: 57  LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
           L K   G     +   +  V     +GK   +YF  + CP  C      +A    K    
Sbjct: 4   LAKYLPG--ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHVA 60

Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKE 145
            N   +  + IS D   +       Y  +
Sbjct: 61  KNF-EV--VLISWD---ENESDFHDYYGK 83

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 57  LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
           L K   G   E +   +  V+ +   GK    YF  + CP        ++    +K    
Sbjct: 4   LDKYLPG--IEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHES 60

Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKE 145
            N      +F + D   +  +    Y  +
Sbjct: 61  KNF---EVVFCTWD---EEEDGFAGYFAK 83

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 11/115 (9%)

Query: 59  KVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
            + +G K     + D         D   K+ +++F  + C   C  E  K+     K   
Sbjct: 4   PLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGH-CQQETPKLYDWWLKNRA 62

Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
           +     I     +++      E   K+++             +        Y +Y
Sbjct: 63  K----GIQVYAANIE---RKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY 110

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 8/106 (7%)

Query: 66  FELVDCNNKPVKSEDFL--GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
            +LV  N   V + + L        YF    CP  C      +A + +++    +     
Sbjct: 7   IKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP-CRGFTPILADMYSEL--VDDSAPFE 63

Query: 124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
            IF+S D    + + + +Y+ E    ++ +       +     Y +
Sbjct: 64  IIFVSSD---RSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGI 106

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 56  NLGKVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNK 112
           +  K  +G K   F     +        F  ++ L++     C   C + +E + A    
Sbjct: 1   SNAKNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHA-CAEMIEGLKA-SPV 58

Query: 113 IDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
           I+G      +  + I  D   +  +   K+  +F+ ++         +      Y + 
Sbjct: 59  INGFTAAKKLKVLSIYPD---EELDEWKKHRNDFAKEWTNGYDKELVIKNK-NLYDLR 112

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)

Query: 56  NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
           N G  A    F  V  +    +      ++ +++F    C + C    +  A +   ++ 
Sbjct: 2   NAGMKAA--DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSN-CRKFEKLFAEIPAFVEM 58

Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
             N   +  + I  D   +  E            +I        +    + Y + 
Sbjct: 59  VEN-GTLRVLAIYPD---ENREEWATKAVYMPQGWIVGWNKAGDIRTR-QLYDIR 108

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F L D + K V + D  GK  LI F F  CP  C  E+ K+    N    +         
Sbjct: 11  FSLPDLHGKTVSNADLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDYKNKNFQ------ 63

Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
            ++V    D  E V +YVK++   F  +    + V    +A+  
Sbjct: 64  VLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVG---QAFGT 104

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F L D N K ++  D  GK   + F  T C   C  E   MA        Q     +  +
Sbjct: 9   FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ----GVEIV 63

Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
            ++V    ++   V  ++K +   F  +  T  QV     AY V 
Sbjct: 64  AVNVG---ESKIAVHNFMKSYGVNFPVVLDTDRQVL---DAYDVS 102

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 60  VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
           +A G        +D     V   DF GK+ L+ F F  C   C  E   +    N    +
Sbjct: 3   LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSW-CRKETPYLLKTYNAFKDK 61

Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
                 T   +S D      E   K ++E    +  +    + V    ++Y +
Sbjct: 62  ----GFTIYGVSTD---RREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F     +  P       GK A+++F    CP  C  E   ++ V            +T +
Sbjct: 7   FTATTLSGAPFDGASLQGKPAVLWFWTPWCP-FCNAEAPSLSQVAAANPA------VTFV 59

Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
            I+          +  +V +++  F  L      +      Y V 
Sbjct: 60  GIATR---ADVGAMQSFVSKYNLNFTNLNDADGVIW---ARYNVP 98

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 16/116 (13%)

Query: 59  KVAIGGK----FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKID 114
            +  G      F   D N K V   D  GK+  I    T C   C  EL  +  +  K  
Sbjct: 2   SLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGP-CRGELPALKELEEKYA 60

Query: 115 GQPNVPNITPIFISVDPERDTPELVGKYVKEFS-PKFIGLTGTVEQVAAACKAYRV 169
           G+    +I  + +S D      +     V +          GT         AY +
Sbjct: 61  GK----DIHFVSLSCD---KNKKAWENMVTKDQLKGIQLHMGTDRTFM---DAYLI 106

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 7/103 (6%)

Query: 43  KAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDE 102
               + L        G     G+   +         +   GK    YF  + CP  C   
Sbjct: 8   HHHSSGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPP-CRGF 66

Query: 103 LEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE 145
             ++     K     N      I  S D   +  +    Y  +
Sbjct: 67  TPQLVEFYEKHHDSKNF---EIILASWD---EEEDDFNAYYAK 103

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 7/88 (7%)

Query: 58  GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
            K        ++      +      GK    YF  + CP        ++         + 
Sbjct: 3   LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEKK 61

Query: 118 NVPNITPIFISVDPERDTPELVGKYVKE 145
           N      + IS D   ++ E    Y  +
Sbjct: 62  NF---EVMLISWD---ESAEDFKDYYAK 83

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 20/123 (16%), Positives = 27/123 (21%), Gaps = 14/123 (11%)

Query: 48  ALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
           +LE    +      I    +L D         D  GK  LI F   +           + 
Sbjct: 2   SLEIPEDKIKEASII--DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAM-SAAHNLALR 58

Query: 108 AVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS-PKFIGLTGTVEQVAAACKA 166
            + NK   Q          IS+D                         G           
Sbjct: 59  ELYNKYASQ----GFEIYQISLD---GDEHFWKTSADNLPWVCVRDANGAYSSYI---SL 108

Query: 167 YRV 169
           Y V
Sbjct: 109 YNV 111

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 9/104 (8%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
            + +      +   DF  +  ++      C   C  E + +  +  ++    N       
Sbjct: 42  GDSLMEEGTQINLSDFENQVVILNAWGQWCAP-CRSESDDLQIIHEELQAAGNGDTPGGT 100

Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
            + ++    + ++   +V +    +  +       AA+      
Sbjct: 101 VLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPA 144

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 16/132 (12%)

Query: 51  KERRRNLGKVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
              R       +  +   F L   + + +   +  G   +++F    CP  C    + + 
Sbjct: 2   NAPRAAGHSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPS-CVYMADLLD 60

Query: 108 AVVNKIDG---------QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVE 158
            +  K                     +     P  DTPE+  K++  +      +     
Sbjct: 61  RLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDG 120

Query: 159 QVAAACKAYRVY 170
            +    + + V 
Sbjct: 121 SLV---EKFNVR 129

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 19/120 (15%)

Query: 57  LGKVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKI 113
              V  G      E +  N+      + LG++ L+ F   +  +       ++A  VNK 
Sbjct: 4   TEGVNPGDLAPRIEFLG-NDAKASFHNQLGRYTLLNFWAAYDAE-SRARNVQLANEVNKF 61

Query: 114 DGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK----FIGLTGTVEQVAAACKAYRV 169
                   I    IS+D +        + VK         F    G   ++    K Y +
Sbjct: 62  GPD----KIAMCSISMDEKESIFT---ETVKIDKLDLSTQFHEGLGKESELY---KKYDL 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.95
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.95
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.94
3me7_A	170	Putative uncharacterized protein; electron transfe	99.93
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.93
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.92
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.91
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.9
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.89
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.89
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.89
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.88
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.88
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.88
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.88
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.87
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.87
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.87
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.87
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.87
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.87
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.87
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.87
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.86
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.86
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.86
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.86
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.86
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.86
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.86
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.86
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.86
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.85
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.85
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.85
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.85
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.85
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.85
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.85
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.85
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.85
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.85
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.85
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.85
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.85
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.85
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.84
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.84
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.84
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.84
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.84
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.84
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.83
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.83
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.83
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.83
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.83
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.83
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.83
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.83
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.83
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.83
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.83
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.83
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.83
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.82
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.82
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.82
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.82
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.82
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.71
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.82
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.82
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.82
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.82
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.71
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.81
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.81
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.81
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.81
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.81
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.81
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.8
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.8
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.8
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.79
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.79
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.79
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.79
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.79
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.79
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.78
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.78
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.77
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.77
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.77
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.76
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.75
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.74
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.73
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.71
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.69
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.68
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.63
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.61
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.23
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.2
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.19
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.19
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.11
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.05
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.02
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.01
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.01
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.99
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.95
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.94
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.92
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.92
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.91
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.91
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.9
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.9
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.9
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.89
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.88
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.88
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.87
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.87
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.86
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.86
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.85
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.84
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.84
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.83
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.83
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.83
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.83
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.83
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.83
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.83
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.83
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.82
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.82
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.81
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.8
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.8
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.78
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.78
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.78
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.78
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.78
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.77
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.77
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.77
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.77
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.76
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.76
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.75
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.75
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.74
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.74
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.74
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.74
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.74
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.74
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.74
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.73
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.73
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.71
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.71
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.7
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.7
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.69
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.15
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.69
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.68
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.67
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.67
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.66
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.66
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.65
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.63
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.63
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.0
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.58
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.57
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.57
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.53
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.52
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.51
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.5
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.5
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.49
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.49
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.49
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.48
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.44
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.44
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.43
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.43
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.4
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.39
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.38
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.37
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.36
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.33
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.3
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.28
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.28
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.25
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.25
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.21
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.21
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.2
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.18
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.13
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.12
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.11
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.98
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	97.86
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.84
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	97.83
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.83
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.83
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.82
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.79
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.77
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.73
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	97.68
1ttz_A	87	Conserved hypothetical protein; structural genomic	97.6
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	97.55
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	97.54
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.53
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.43
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.43
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.35
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.35
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.32
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.22
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.22
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.19
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.14
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.09
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.98
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	96.96
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.88
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	96.81
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	96.76
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.73
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.67
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.62
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	96.57
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.55
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.5
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.47
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.44
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.39
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	96.34
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	96.3
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	96.27
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.16
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	95.93
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	95.88
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	95.59
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	95.58
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	95.54
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	95.49
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.2
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.07
3fz4_A	120	Putative arsenate reductase; APC61768, structural	94.98
3l78_A	120	Regulatory protein SPX; transcription, transcripti	94.93
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	94.91
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	94.54
3gkx_A	120	Putative ARSC family related protein; ARSC family	94.18
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	94.17
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	93.83
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	93.07
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	93.04
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	93.0
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	92.92
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	92.68
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	92.61
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	92.56
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	92.52
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	92.48
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	91.8
3rdw_A	121	Putative arsenate reductase; structural genomics,	91.47
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	90.98
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	90.62
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	90.57
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	90.31
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	90.27
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	89.35
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	88.3
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	88.09
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	84.21
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	84.17
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	83.34
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	82.57
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	80.67

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.95  E-value=9.3e-27  Score=170.62  Aligned_cols=116  Identities=53%  Similarity=1.106  Sum_probs=104.2

Q ss_pred             ccC-CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         61 AIG-GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        61 ~~~-p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      .++ |+|+++|.+|+.+++++++||++||+||++||+++|+.++|.|+++++++++....+++++|+|++|+++|+++.+
T Consensus         3 ~~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~   82 (171)
T 2rli_A            3 FTGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM   82 (171)
T ss_dssp             CCCCSCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred             CCCCCCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence            356 9999999999999999999999999999999997799999999999999974211248999999999988999999


Q ss_pred             HHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592        140 GKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPK  176 (183)
Q Consensus       140 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~  176 (183)
                      ++|+++++.+|+.+.++.+....+++.||+.+.+.+.
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~  119 (171)
T 2rli_A           83 ARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPK  119 (171)
T ss_dssp             HHHHHTTCTTCCEEECCHHHHHHHHHHSCCCCEECCC
T ss_pred             HHHHHHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCC
Confidence            9999999999999999988888999999998776443

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.95  E-value=2.2e-27  Score=175.35  Aligned_cols=113  Identities=24%  Similarity=0.417  Sum_probs=96.3

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      .+.++|+|+|+|++|+++++++++||++||+||+||||.+|+.+++.|.++++.++++  +.++++|+||+||++|+++.
T Consensus         8 ~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~--~~~v~~v~isvDp~~Dtp~~   85 (170)
T 4hde_A            8 LNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEE--KLDVQFVSFSVDPDLDKPEN   85 (170)
T ss_dssp             CCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHT--TCCCEEEEEESCTTTCCHHH
T ss_pred             CCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcc--cccceeEeeecCcccccHHH
Confidence            3456699999999999999999999999999999999977999999999999999866  56899999999999999999


Q ss_pred             HHHHHHHhC---CCeEEecCC-HHHHHHHHh-hcCeeEee
Q psy17592        139 VGKYVKEFS---PKFIGLTGT-VEQVAAACK-AYRVYFSA  173 (183)
Q Consensus       139 ~~~~~~~~~---~~~~~l~~~-~~~~~~~~~-~~gv~~~~  173 (183)
                      +++|+++++   ..|.+++|+ .+.+..+++ .|++.+..
T Consensus        86 l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~  125 (170)
T 4hde_A           86 LKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDK  125 (170)
T ss_dssp             HHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBC
T ss_pred             HHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccC
Confidence            999999987   468889884 455555544 45655443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.94  E-value=1.1e-26  Score=169.07  Aligned_cols=112  Identities=57%  Similarity=1.120  Sum_probs=102.0

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      ++|+|+++|.+|+++++++++||++||+||++|||++|+.++|.|+++++++++....+++++++|++|+++|+++.+++
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~   81 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   81 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence            45999999999999999999999999999999999669999999999999997521123899999999998899999999


Q ss_pred             HHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        142 YVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      |+++++.+|+.++++.+....+++.||+.+.+
T Consensus        82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p  113 (164)
T 2ggt_A           82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSP  113 (164)
T ss_dssp             HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEE
T ss_pred             HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEe
Confidence            99999999999999888888999999998766

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.93  E-value=7.5e-26  Score=166.87  Aligned_cols=111  Identities=22%  Similarity=0.299  Sum_probs=98.3

Q ss_pred             cccCC-CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         60 VAIGG-KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        60 ~~~~p-~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      +..+| +|+++|.+|+++++++++||++||+||++|||++|+.+++.|++++++++++  +.++++|+|++|| +|+++.
T Consensus         4 G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~--~~~~~vv~is~d~-~d~~~~   80 (170)
T 3me7_A            4 GTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP--GKDFWVITFTFDP-KDTLED   80 (170)
T ss_dssp             TCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCB--TTTBEEEEEECCT-TCCHHH
T ss_pred             CCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhc--CCceEEEEEECCC-CCCHHH
Confidence            45669 9999999999999999999999999999999866999999999999999764  4579999999999 799999


Q ss_pred             HHHHHHHhC---CCeEEe-cCCHHHHHHHHhhcCeeEee
Q psy17592        139 VGKYVKEFS---PKFIGL-TGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       139 ~~~~~~~~~---~~~~~l-~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +++|+++++   +.|.++ .++.+.+.+++++||+.+..
T Consensus        81 ~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~  119 (170)
T 3me7_A           81 IKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMT  119 (170)
T ss_dssp             HHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEec
Confidence            999999999   456664 57788899999999876654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.93  E-value=7.6e-26  Score=170.96  Aligned_cols=118  Identities=44%  Similarity=0.952  Sum_probs=100.7

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .++.+..+|+|+++|.+|+++++++++||++||+||++|||++|+.++|.|+++++++.++ +.+++++|+|++|+++|+
T Consensus        14 ~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~-~~~~v~vv~Is~D~~~d~   92 (200)
T 2b7k_A           14 GYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSK-YGITLQPLFITCDPARDS   92 (200)
T ss_dssp             --CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEESCTTTCC
T ss_pred             ccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHh-hCCceEEEEEECCCCCCC
Confidence            4455555699999999999999999999999999999999977999999999999988642 013799999999998899


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      ++.+++|+++++.+|..++++.+....+++.||+.+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p  131 (200)
T 2b7k_A           93 PAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTP  131 (200)
T ss_dssp             HHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeec
Confidence            999999999999999999998888899999999987554

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.92  E-value=1.2e-25  Score=164.60  Aligned_cols=113  Identities=36%  Similarity=0.745  Sum_probs=101.0

Q ss_pred             ccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        61 ~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      ..+|+|+++|.+| .+++++++||++||+||++||+++|+.++|.|+++++++++++ .+++++++|++|+++|+++.++
T Consensus        14 ~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~-~~~v~vv~is~d~~~d~~~~~~   91 (172)
T 2k6v_A           14 PKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKA-QERVQVIFVSVDPERDPPEVAD   91 (172)
T ss_dssp             EEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHH-HTTEEEEEEESCTTTCCHHHHH
T ss_pred             CCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhc-cCCEEEEEEEECCCCCCHHHHH
Confidence            3469999999999 9999999999999999999999669999999999999876420 0269999999999889999999


Q ss_pred             HHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                      +|+++++.+|+.+.++.+.+.++++.||+.+...+
T Consensus        92 ~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~  126 (172)
T 2k6v_A           92 RYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQ  126 (172)
T ss_dssp             HHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEecc
Confidence            99999999999999999888999999999876543

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.91  E-value=6.9e-25  Score=159.79  Aligned_cols=106  Identities=23%  Similarity=0.243  Sum_probs=89.1

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+|+|.+|+.++|++++||++||+|| ++|||+ |..++|.|+++++++++.    ++.+++||.|    +
T Consensus         4 l~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~~~~----~~~~v~vs~d----~   74 (157)
T 4g2e_A            4 VEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQV-CTKEMCTFRDSMAKFNQV----NAVVLGISVD----P   74 (157)
T ss_dssp             CCTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC-------CCSCGGGGGGGC----SSEEEEEESS----C
T ss_pred             CCCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCc-cccchhhccccccccccc----CceEeeeccc----c
Confidence            45677789999999999999999999999999999 999998 999999999999999866    8999999987    6


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      ++.+++|+++++.+|+.+.+....   ++++||+.++..
T Consensus        75 ~~~~~~~~~~~~~~~p~l~D~~~~---v~~~ygv~~~~~  110 (157)
T 4g2e_A           75 PFSNKAFKEHNKLNFTILSDYNRE---VVKKYNVAWEFP  110 (157)
T ss_dssp             HHHHHHHHHHTTCCSEEEECTTSH---HHHHTTCEEECT
T ss_pred             hhHHHHHHHHcCCcEEEEEcCCcH---HHHHcCCccccc
Confidence            899999999999999999876544   899999987643

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=2.1e-23  Score=149.96  Aligned_cols=107  Identities=16%  Similarity=0.123  Sum_probs=95.3

Q ss_pred             CCCcccCCCeEEEcCCCCeeecC--ccCCCEEEEEEEcCCCCCC-cHHHHHHHHHHHHHh-hCCCCCCCeeEEEEEeCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSE--DFLGKWALIYFGFTHCPDI-CPDELEKMAAVVNKI-DGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vll~f~~t~C~~~-C~~~~~~l~~l~~~~-~~~~~~~~v~~v~Is~dp~  132 (183)
                      +..+..+|+|+++|.+|+.++++  +++||++||+||++||+++ |+.++|.|.++++++ +++    ++++++|++|  
T Consensus         5 l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~----~~~~v~v~~d--   78 (150)
T 3fw2_A            5 SEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK----YIGMLGISLD--   78 (150)
T ss_dssp             TSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS----SEEEEEEECC--
T ss_pred             ccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC----CeEEEEEEcC--
Confidence            45667779999999999999999  9999999999999999966 999999999999999 644    7999999999  


Q ss_pred             CCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        133 RDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                       ++++.+++|+++++.+|+.+.+.......+++.||+.
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  115 (150)
T 3fw2_A           79 -VDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIY  115 (150)
T ss_dssp             -SCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred             -CCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCC
Confidence             5679999999999999999988744445689999975

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.89  E-value=3.9e-23  Score=151.61  Aligned_cols=114  Identities=24%  Similarity=0.348  Sum_probs=96.1

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCC-CCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCP-DICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~-~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++||+ + |+.+++.|.+++++++++  +.++++|+|++|+++|
T Consensus         6 ~l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~-C~~~~~~l~~l~~~~~~~--~~~~~vv~is~d~~~d   82 (174)
T 1xzo_A            6 KDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETI-CPPMTAHMTDLQKKLKAE--NIDVRIISFSVDPEND   82 (174)
T ss_dssp             CSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSC-CCSHHHHHHHHHHHHHHT--TCCCEEEEEESCTTTC
T ss_pred             cCccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcch-hHHHHHHHHHHHHHhhhc--CCcEEEEEEEeCCCCC
Confidence            45566677999999999999999999999999999999999 6 999999999999999875  2359999999999888


Q ss_pred             cHHHHHHHHHHhCCCe---EEecC-CHHHHHHHHh-hcCeeEe
Q psy17592        135 TPELVGKYVKEFSPKF---IGLTG-TVEQVAAACK-AYRVYFS  172 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~-~~gv~~~  172 (183)
                      +++.+++|+++++.+|   +.+.+ +.+....+.. .|++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  125 (174)
T 1xzo_A           83 KPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVK  125 (174)
T ss_dssp             CHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCC
T ss_pred             CHHHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEe
Confidence            9999999999999877   88888 4444444443 4554443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.89  E-value=2.9e-22  Score=144.25  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE  137 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~  137 (183)
                      ..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|+++++++.++    ++++++|++|   ++.+
T Consensus         4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~----~~~vv~v~~d---~~~~   75 (152)
T 2lrn_A            4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSW-CRKETPYLLKTYNAFKDK----GFTIYGVSTD---RREE   75 (152)
T ss_dssp             CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTT-HHHHHHHHHHHHHHHTTT----TEEEEEEECC---SCHH
T ss_pred             cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChh-HHHHHHHHHHHHHHhccC----CeEEEEEEcc---CCHH
Confidence            3455679999999999999999999999999999999998 999999999999999865    7999999999   5688


Q ss_pred             HHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      .+++|+++++.+|+.+.+.......+++.||+.
T Consensus        76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (152)
T 2lrn_A           76 DWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV  108 (152)
T ss_dssp             HHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence            999999999999999998865567799999975

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.89  E-value=1.5e-23  Score=149.57  Aligned_cols=105  Identities=17%  Similarity=0.195  Sum_probs=87.5

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+..+|+|++ +.+|+.+++++++||++||+||++||++ |..++|.|++++++++++    ++++|+|++|   ++.
T Consensus         7 l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~----~~~vv~vs~d---~~~   77 (143)
T 4fo5_A            7 VNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAE-SRARNVQLANEVNKFGPD----KIAMCSISMD---EKE   77 (143)
T ss_dssp             SSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHH-HHHHHHHHHHHHTTSCTT----TEEEEEEECC---SCH
T ss_pred             cCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhCcC----CEEEEEEEcc---CCH
Confidence            456667799999 9999999999999999999999999998 999999999999998765    7999999999   468


Q ss_pred             HHHHHHHHHhCCCe-EEecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPKF-IGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+++|+++++.+| ..+.+.......+++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (143)
T 4fo5_A           78 SIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLR  112 (143)
T ss_dssp             HHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGG
T ss_pred             HHHHHHHHHhCCCCceeeecccccchHHHHHcCCC
Confidence            89999999999999 77766544445688889875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.88  E-value=9.4e-23  Score=148.45  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=94.7

Q ss_pred             CCCcccCCCeE--EEcCCCCeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         57 LGKVAIGGKFE--LVDCNNKPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        57 ~~~~~~~p~f~--l~d~~G~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      +..+..+|+|+  ++|.+|+++++++++||++||+||+ +|||+ |+.++|.|++++++++++    ++++|+|+.|   
T Consensus         7 l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~-C~~~~~~l~~~~~~~~~~----~~~vv~vs~d---   78 (163)
T 3gkn_A            7 AVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPG-ATTEGLDFNALLPEFDKA----GAKILGVSRD---   78 (163)
T ss_dssp             CCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHH-HHHHHHHHHHHHHHHHHT----TCEEEEEESS---
T ss_pred             cccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCc-HHHHHHHHHHHHHHHHHC----CCEEEEEeCC---
Confidence            45566779999  9999999999999999999999998 99997 999999999999999866    7999999997   


Q ss_pred             CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        134 DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                       +++.+++|+++++.+|+.+.+...   ++++.||++...
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~~~~  114 (163)
T 3gkn_A           79 -SVKSHDNFCAKQGFAFPLVSDGDE---ALCRAFDVIKEK  114 (163)
T ss_dssp             -CHHHHHHHHHHHCCSSCEEECTTC---HHHHHTTCEEEE
T ss_pred             -CHHHHHHHHHHhCCCceEEECCcH---HHHHHhCCcccc
Confidence             789999999999999999987544   488999998754

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.88  E-value=3.7e-22  Score=148.03  Aligned_cols=90  Identities=14%  Similarity=0.231  Sum_probs=82.1

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCC
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERD  134 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d  134 (183)
                      ++...|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++|+|++|+    +.|
T Consensus        14 ~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~-C~~~~p~l~~l~~~~~~~----~~~vi~is~d~~~~~~~d   88 (180)
T 3kij_A           14 KINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQL-TDRNYLGLKELHKEFGPS----HFSVLAFPCNQFGESEPR   88 (180)
T ss_dssp             CCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHTTT----SEEEEEEECCCSTTCCCS
T ss_pred             CcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCC-cHHHHHHHHHHHHHhccC----CeEEEEEECCccccCCCC
Confidence            445569999999999999999999999999999999997 999999999999999865    79999999985    347


Q ss_pred             cHHHHHHHHHH-hCCCeEEe
Q psy17592        135 TPELVGKYVKE-FSPKFIGL  153 (183)
Q Consensus       135 ~~~~~~~~~~~-~~~~~~~l  153 (183)
                      +++.+++|+++ ++.+|+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~  108 (180)
T 3kij_A           89 PSKEVESFARKNYGVTFPIF  108 (180)
T ss_dssp             CHHHHHHHHHHHHCCCSCBB
T ss_pred             CHHHHHHHHHHhcCCCCcee
Confidence            99999999999 99998875

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.88  E-value=7.1e-23  Score=152.06  Aligned_cols=109  Identities=15%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             hhcCCCccc----CCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592         54 RRNLGKVAI----GGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS  128 (183)
Q Consensus        54 ~~~~~~~~~----~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is  128 (183)
                      ...+..+..    +|+|+++|.+|+++++++++||++||+|| ++|||+ |+.++|.|++++++++++    ++++|+|+
T Consensus        18 ~~~l~~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~-C~~el~~l~~l~~~~~~~----~~~vv~Vs   92 (179)
T 3ixr_A           18 GSHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPG-SSTEGLEFNLLLPQFEQI----NATVLGVS   92 (179)
T ss_dssp             CCSSCTTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHH-HHHHHHHHHHHHHHHHTT----TEEEEEEE
T ss_pred             CcccCcCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEc
Confidence            345556666    79999999999999999999999999999 999997 999999999999999876    89999999


Q ss_pred             eCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        129 VDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       129 ~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      .|    +++.+++|+++++.+|+.+.+...   ++++.||++....
T Consensus        93 ~D----~~~~~~~~~~~~~~~f~~l~D~~~---~~~~~~gv~~~~~  131 (179)
T 3ixr_A           93 RD----SVKSHDSFCAKQGFTFPLVSDSDA---ILCKAFDVIKEKT  131 (179)
T ss_dssp             SC----CHHHHHHHHHHHTCCSCEEECTTC---HHHHHTTCEEEEC
T ss_pred             CC----CHHHHHHHHHHcCCceEEEECCch---HHHHHcCCccccc
Confidence            87    688999999999999999987554   4899999987653

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.88  E-value=2.2e-22  Score=146.65  Aligned_cols=101  Identities=16%  Similarity=0.224  Sum_probs=91.4

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCE-EEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKW-ALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~-vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      ..+..+|+|+++|.+|+.+++++++||+ +||+|| ++|||+ |+.++|.|++++++++++    ++++|+|++|    +
T Consensus         3 ~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~----~v~vv~vs~d----~   73 (161)
T 3drn_A            3 KVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPG-STREASAFRDNWDLLKDY----DVVVIGVSSD----D   73 (161)
T ss_dssp             CTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHH-HHHHHHHHHHTHHHHHTT----CEEEEEEESC----C
T ss_pred             CCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHc----CCEEEEEeCC----C
Confidence            4566779999999999999999999997 999999 999997 999999999999999876    7999999987    6


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++.+++|+++++.+|+.+.+....   +++.||+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  105 (161)
T 3drn_A           74 INSHKRFKEKYKLPFILVSDPDKK---IRELYGAK  105 (161)
T ss_dssp             HHHHHHHHHHTTCCSEEEECTTSH---HHHHTTCC
T ss_pred             HHHHHHHHHHhCCCceEEECCcHH---HHHHcCCC
Confidence            899999999999999999885444   88889885

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.87  E-value=1.1e-23  Score=154.59  Aligned_cols=104  Identities=24%  Similarity=0.310  Sum_probs=93.0

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCcc--CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDF--LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~--~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      +..+..+|+|+|+|.+|+.++|+++  +||++||+|| ++|||+ |..++|.|+++++++++.    ++++++||.|   
T Consensus         5 l~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~-C~~e~~~l~~~~~~~~~~----~v~vv~is~d---   76 (164)
T 4gqc_A            5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPV-CTKELCTFRDKMAQLEKA----NAEVLAISVD---   76 (164)
T ss_dssp             CCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCE-ECSSCEESCCCGGGGGGS----SSEEEEEESS---
T ss_pred             ccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCC-cccchhhhhhhHHHhhcc----CceEEEecCC---
Confidence            4556777999999999999999998  8999999988 999997 999999999999999876    8999999986   


Q ss_pred             CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                       +++.+++|.++++.+|+.+.+....   ++++||++..
T Consensus        77 -~~~~~~~~~~~~~~~fp~l~D~~~~---v~~~ygv~~~  111 (164)
T 4gqc_A           77 -SPWCLKKFKDENRLAFNLLSDYNRE---VIKLYNVYHE  111 (164)
T ss_dssp             -CHHHHHHHHHHTTCCSEEEECTTSH---HHHHTTCEEE
T ss_pred             -CHHHHHHHHHhcCcccceeecCchH---HHHHcCCccc
Confidence             7899999999999999999876544   8999998754

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.87  E-value=4.1e-22  Score=141.92  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHH---HHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAA---VVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~---l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      ..+..+|+|+++|.+|+.+++++++||++||+||++||++ |+.++|.|.+   +++++++.    ++.+++|+.|   +
T Consensus         6 ~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~~~~l~~~~~~~----~~~vi~i~~d---~   77 (142)
T 3eur_A            6 RLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHA-CAEMIEGLKASPVINGFTAAK----KLKVLSIYPD---E   77 (142)
T ss_dssp             CTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHH-HHHHHHHHHHCHHHHHHHHTT----SEEEEEEECS---S
T ss_pred             cCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCcc-HHHHHHHHhhhHHHHHHhccC----CeEEEEEEcC---C
Confidence            3455679999999999999999999999999999999998 9999999999   99999865    8999999998   5


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+.+++|+++++.+|+.+.+.... ..+++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~v~  112 (142)
T 3eur_A           78 ELDEWKKHRNDFAKEWTNGYDKELV-IKNKNLYDLR  112 (142)
T ss_dssp             CHHHHHHHGGGSCTTSEEEECTTCH-HHHTTCSCCT
T ss_pred             CHHHHHHHHHhcccccccccCccch-hhhhhhcCCC
Confidence            6789999999999999988765332 3467888874

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.87  E-value=3.1e-22  Score=142.17  Aligned_cols=102  Identities=12%  Similarity=0.206  Sum_probs=89.6

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHH---HHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAA---VVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~---l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|.+   ++++++++    ++.+++|++|   ++.
T Consensus         4 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~~~~l~~~~~~~----~~~~v~v~~d---~~~   75 (142)
T 3ewl_A            4 GMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSN-CRKFEKLFAEIPAFVEMVENG----TLRVLAIYPD---ENR   75 (142)
T ss_dssp             TSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHH-HHHHHHHHHTCHHHHHHHHHT----SEEEEEEECS---SCH
T ss_pred             CCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCcc-HHHHHHHHHHhHHHHHHhccC----CeEEEEEEec---CCH
Confidence            45669999999999999999999999999999999998 9999999999   99988765    7999999999   578


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+++|+++++.+|+.+.+....+. .++.||+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~v~  108 (142)
T 3ewl_A           76 EEWATKAVYMPQGWIVGWNKAGDIR-TRQLYDIR  108 (142)
T ss_dssp             HHHHHHHTTSCTTCEEEECTTCHHH-HTTCSCCC
T ss_pred             HHHHHHHHHcCCCcceeeCCccchh-hHHHcCCC
Confidence            9999999999999999988765531 24478864

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.87  E-value=6.5e-22  Score=150.43  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=82.3

Q ss_pred             CcccCCCeEEEcCC-CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----CCC
Q psy17592         59 KVAIGGKFELVDCN-NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----PER  133 (183)
Q Consensus        59 ~~~~~p~f~l~d~~-G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p~~  133 (183)
                      ....+|+|+++|.+ |+.+++++++||++||+|||||||+ |+.++|.|++++++++++    +++||+|++|    ++.
T Consensus        22 ~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~-C~~e~p~l~~l~~~~~~~----g~~vv~v~~d~~~~~e~   96 (208)
T 2f8a_A           22 SMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGT-TVRDYTQMNELQRRLGPR----GLVVLGFPCNQFGHQEN   96 (208)
T ss_dssp             CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCCSTTTTC
T ss_pred             hcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHccCC----CeEEEEEECCcccccCC
Confidence            34456999999999 9999999999999999999999998 999999999999999865    7999999997    456


Q ss_pred             CcHHHHHHHHH------HhCCCeEEec
Q psy17592        134 DTPELVGKYVK------EFSPKFIGLT  154 (183)
Q Consensus       134 d~~~~~~~~~~------~~~~~~~~l~  154 (183)
                      ++++.+++|++      +++.+|+.+.
T Consensus        97 d~~~~i~~f~~~~~~~~~~~~~fp~l~  123 (208)
T 2f8a_A           97 AKNEEILNSLKYVRPGGGFEPNFMLFE  123 (208)
T ss_dssp             SCHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             CCHHHHHHHHHhcccccccccceEEEE
Confidence            78899999998      8899998874

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.87  E-value=1.1e-21  Score=139.74  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             CCCcccCCCeEEEcCCCCeeecC--ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHh-hCCCCCCCeeEEEEEeCCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSE--DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKI-DGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~-~~~~~~~~v~~v~Is~dp~~  133 (183)
                      +..+..+|+|++++.+|+.++++  +++||++||+||++||++ |+.++|.|.++++++ .++    ++.+++|++|   
T Consensus         5 ~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~-C~~~~~~l~~l~~~~~~~~----~~~~v~v~~d---   76 (148)
T 3fkf_A            5 VTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDP-QPEANAELKRLNKEYKKNK----NFAMLGISLD---   76 (148)
T ss_dssp             CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCC-CHHHHHHHHHHHHHTTTCT----TEEEEEEECC---
T ss_pred             ccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHH-HHHHhHHHHHHHHHhcCCC----CeEEEEEECC---
Confidence            45666779999999999999999  999999999999999998 999999999999998 654    7999999999   


Q ss_pred             CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        134 DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      ++.+.+++|+++++.+|+.+.+.......+++.||+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  114 (148)
T 3fkf_A           77 IDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILT  114 (148)
T ss_dssp             SCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCC
Confidence            46789999999999999999886443456889998753

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=145.51  Aligned_cols=91  Identities=9%  Similarity=0.110  Sum_probs=83.0

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCC
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERD  134 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d  134 (183)
                      .+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++++|++|.    +.+
T Consensus        25 ~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~-C~~~~~~l~~l~~~~~~~----~v~vv~is~d~~~~~~~~   99 (185)
T 2gs3_A           25 CARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGK-TEVNYTQLVDLHARYAEC----GLRILAFPCNQFGKQEPG   99 (185)
T ss_dssp             GCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCTTTTCCCS
T ss_pred             CCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCc-hHHHHHHHHHHHHHhhcC----CeEEEEEECcccCCCCCC
Confidence            445569999999999999999999999999999999997 999999999999999865    79999999984    456


Q ss_pred             cHHHHHHHHHHhCCCeEEec
Q psy17592        135 TPELVGKYVKEFSPKFIGLT  154 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~  154 (183)
                      +++.+++|+++++.+|+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~p~~~  119 (185)
T 2gs3_A          100 SNEEIKEFAAGYNVKFDMFS  119 (185)
T ss_dssp             CHHHHHHHHHHTTCCSEEBC
T ss_pred             CHHHHHHHHHHcCCCCeeee
Confidence            89999999999999999885

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.87  E-value=3.5e-22  Score=144.32  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=91.5

Q ss_pred             cccCCCeEEEcC--CCCeeecCccCCCEEEEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCeeEEEEEeCCC---C
Q psy17592         60 VAIGGKFELVDC--NNKPVKSEDFLGKWALIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNITPIFISVDPE---R  133 (183)
Q Consensus        60 ~~~~p~f~l~d~--~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~---~  133 (183)
                      +..+|+|+++|.  +|+.+++++++||++||+||++|||+ |..+ +|.|++++++++++    ++.+++|++|+.   .
T Consensus         3 g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~-C~~~~~~~l~~l~~~~~~~----~v~~v~v~~~~~~~~~   77 (158)
T 3eyt_A            3 AMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPG-CVMHGIPLAQKVRAAFPED----KVAVLGLHTVFEHHEA   77 (158)
T ss_dssp             CEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHH-HHHTHHHHHHHHHHHSCTT----TEEEEEEECCCSCGGG
T ss_pred             CCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcc-hhhhhhHHHHHHHHHhCcC----CEEEEEEEeccccccc
Confidence            456799999994  88999999999999999999999998 9996 99999999999755    799999999854   4


Q ss_pred             CcHHHHHHHHHHhCCCeEEecCCHHH--HHHHHhhcCeeE
Q psy17592        134 DTPELVGKYVKEFSPKFIGLTGTVEQ--VAAACKAYRVYF  171 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~gv~~  171 (183)
                      ++++.+++|+++++.+|+.+.+....  +..+++.||+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~  117 (158)
T 3eyt_A           78 MTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRG  117 (158)
T ss_dssp             SCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCC
Confidence            68999999999999999988775441  114788888753

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.87  E-value=4.8e-22  Score=145.24  Aligned_cols=105  Identities=15%  Similarity=0.205  Sum_probs=92.4

Q ss_pred             CCcccCCCeEEE--cCCC--CeeecCc-cCCCEEEEEEE-cCCCCCCcH-HHHHHHHHHHHHhhCCCCCCCee-EEEEEe
Q psy17592         58 GKVAIGGKFELV--DCNN--KPVKSED-FLGKWALIYFG-FTHCPDICP-DELEKMAAVVNKIDGQPNVPNIT-PIFISV  129 (183)
Q Consensus        58 ~~~~~~p~f~l~--d~~G--~~v~l~~-~~gk~vll~f~-~t~C~~~C~-~~~~~l~~l~~~~~~~~~~~~v~-~v~Is~  129 (183)
                      ..+..+|+|+++  |.+|  +.+++++ ++||++||+|| ++|||+ |+ .|+|.|++++++++++    +++ +++||.
T Consensus         5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~-C~~~e~~~l~~~~~~~~~~----~v~~vv~Is~   79 (162)
T 1tp9_A            5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPT-CSLKHVPGFIEKAGELKSK----GVTEILCISV   79 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHH-HHHTHHHHHHHHHHHHHHT----TCCCEEEEES
T ss_pred             CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHC----CCCEEEEEEC
Confidence            455667999986  8999  9999999 89999999999 899997 99 8999999999999865    799 999998


Q ss_pred             CCCCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        130 DPERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      |    +++.+++|+++++.  +|+.+.+..   .+++++||+.++..
T Consensus        80 d----~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~  119 (162)
T 1tp9_A           80 N----DPFVMKAWAKSYPENKHVKFLADGS---ATYTHALGLELDLQ  119 (162)
T ss_dssp             S----CHHHHHHHHHTCTTCSSEEEEECTT---SHHHHHTTCEEEET
T ss_pred             C----CHHHHHHHHHhcCCCCCeEEEECCC---chHHHHcCcccccc
Confidence            7    68899999999998  899998754   44899999987653

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.86  E-value=4.4e-22  Score=145.73  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+|| ++|||+ |+.++|.|+++++++  +    ++++|+|+.|    +
T Consensus        17 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~--~----~v~vv~Is~d----~   85 (165)
T 1q98_A           17 PQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGV-CATSVRKFNQQAAKL--S----NTIVLCISAD----L   85 (165)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSC-CCHHHHHHHHHHHHS--T----TEEEEEEESS----C
T ss_pred             CCCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCc-cHHHHHHHHHHHHHc--C----CCEEEEEeCC----C
Confidence            44566679999999999999999999999999999 799997 999999999999998  3    7999999986    6


Q ss_pred             HHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ++.+++|+++++. +|+.+.+.  ....+++.||+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~~gv~~~  121 (165)
T 1q98_A           86 PFAQARFCGAEGIENAKTVSTF--RNHALHSQLGVDIQ  121 (165)
T ss_dssp             HHHHTTCTTTTTCTTEEEEECT--TCTHHHHHTTCEEC
T ss_pred             HHHHHHHHHHcCCCceEEeecc--ccchHHHHhCceec
Confidence            7889999999999 79999875  12458999999864

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.86  E-value=4.9e-22  Score=145.09  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=89.5

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+||+ +|||+ |+.++|.|+++++++  +    ++++|+|+.|    +
T Consensus        16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~-C~~~~~~l~~~~~~~--~----~v~vv~is~d----~   84 (163)
T 1psq_A           16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGI-CSTQTRRFNEELAGL--D----NTVVLTVSMD----L   84 (163)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHH-HHHHHHHHHHHTTTC--T----TEEEEEEESS----C
T ss_pred             CCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCc-cHHHHHHHHHHHHHc--C----CcEEEEEECC----C
Confidence            445667799999999999999999999999999995 99997 999999999999887  3    7999999987    6


Q ss_pred             HHHHHHHHHHhCC-CeEEecC-CHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEFSP-KFIGLTG-TVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~gv~~~  172 (183)
                      ++.+++|+++++. +|+.+.+ ..   ..+++.||+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~~gv~~~  120 (163)
T 1psq_A           85 PFAQKRWCGAEGLDNAIMLSDYFD---HSFGRDYALLIN  120 (163)
T ss_dssp             HHHHHHHHHHHTCTTSEEEECTTT---CHHHHHHTCBCT
T ss_pred             HHHHHHHHHhcCCCCcEEecCCch---hHHHHHhCCccc
Confidence            7889999999999 9999887 43   348889998753

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.86  E-value=5.6e-22  Score=145.92  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=91.3

Q ss_pred             CCcccCCCeEEE-cCCCCeeecCcc-CCCEEEEEEE-cCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCe-eEEEEEeCCC
Q psy17592         58 GKVAIGGKFELV-DCNNKPVKSEDF-LGKWALIYFG-FTHCPDICPD-ELEKMAAVVNKIDGQPNVPNI-TPIFISVDPE  132 (183)
Q Consensus        58 ~~~~~~p~f~l~-d~~G~~v~l~~~-~gk~vll~f~-~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v-~~v~Is~dp~  132 (183)
                      ..+..+|+|+++ |.+|+.++++++ +||++||+|| ++|||+ |+. |+|.|++++++++++    ++ ++|+||.|  
T Consensus         4 ~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~-C~~~e~p~l~~~~~~~~~~----gv~~vv~Is~d--   76 (167)
T 2wfc_A            4 KEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPG-SSKTHLPGYVEQAAAIHGK----GVDIIACMAVN--   76 (167)
T ss_dssp             CTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHH-HHHTHHHHHHHTHHHHHHT----TCCEEEEEESS--
T ss_pred             CCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHC----CCCEEEEEeCC--
Confidence            445667999999 999999999998 9999999986 999997 999 999999999999865    79 99999987  


Q ss_pred             CCcHHHHHHHHHHhCCC--eEEecCCHHHHHHHHhhcCeeEe
Q psy17592        133 RDTPELVGKYVKEFSPK--FIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       133 ~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                        +++.+++|+++++.+  |+.+.+....   ++++||+...
T Consensus        77 --~~~~~~~~~~~~~~~~~fp~l~D~~~~---~~~~~gv~~~  113 (167)
T 2wfc_A           77 --DSFVMDAWGKAHGADDKVQMLADPGGA---FTKAVDMELD  113 (167)
T ss_dssp             --CHHHHHHHHHHTTCTTTSEEEECTTSH---HHHHTTCEEC
T ss_pred             --CHHHHHHHHHhcCCCcceEEEECCCCc---HHHHcCCccc
Confidence              678999999999988  9999886544   8999998764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.86  E-value=2.2e-21  Score=141.42  Aligned_cols=91  Identities=14%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCC
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERD  134 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d  134 (183)
                      .+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++++|++|.    +.+
T Consensus         7 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~~~----~~~vv~v~~d~~~~~~~~   81 (169)
T 2v1m_A            7 SWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGA-TDKNYRQLQEMHTRLVGK----GLRILAFPCNQFGGQEPW   81 (169)
T ss_dssp             CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCCSTTCCCS
T ss_pred             CCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCc-hHHHHHHHHHHHHHhhcC----CeEEEEEECCccCCCCCC
Confidence            455669999999999999999999999999999999997 999999999999999865    79999999973    456


Q ss_pred             cHHHHHHH-HHHhCCCeEEec
Q psy17592        135 TPELVGKY-VKEFSPKFIGLT  154 (183)
Q Consensus       135 ~~~~~~~~-~~~~~~~~~~l~  154 (183)
                      +++.+++| .++++.+|+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~  102 (169)
T 2v1m_A           82 AEAEIKKFVTEKYGVQFDMFS  102 (169)
T ss_dssp             CHHHHHHHHHHHHCCCSEEBC
T ss_pred             CHHHHHHHHHHhcCCCCceEE
Confidence            89999999 599999999885

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.86  E-value=1.6e-21  Score=142.26  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=81.3

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CC
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ER  133 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~  133 (183)
                      ..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++++|++|+    +.
T Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~-C~~~~~~l~~l~~~~~~~----~~~vv~vs~d~~~~~~~   81 (170)
T 2p5q_A            7 KNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGM-TNSNYAEMNQLYEKYKDQ----GLEILAFPCNQFGEEEP   81 (170)
T ss_dssp             ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCTTTTCCC
T ss_pred             CCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCc-cHHHHHHHHHHHHHhccC----CEEEEEEECCCCCCCCC
Confidence            3455669999999999999999999999999999999997 999999999999999865    79999999984    35


Q ss_pred             CcHHHHHHHHH-HhCCCeEEec
Q psy17592        134 DTPELVGKYVK-EFSPKFIGLT  154 (183)
Q Consensus       134 d~~~~~~~~~~-~~~~~~~~l~  154 (183)
                      |+++.+++|++ +++.+|+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~  103 (170)
T 2p5q_A           82 GTNDQITDFVCTRFKSEFPIFD  103 (170)
T ss_dssp             SCHHHHHHHHHHHTCCCSCBBC
T ss_pred             CCHHHHHHHHHHhcCCCceeEe
Confidence            78999999999 7899998873

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.86  E-value=2.1e-21  Score=144.18  Aligned_cols=94  Identities=10%  Similarity=0.156  Sum_probs=84.7

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----C
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----P  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p  131 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++++|++|    +
T Consensus        20 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~-C~~~~~~l~~l~~~~~~~----~v~vv~vs~d~~~~~   94 (183)
T 2obi_A           20 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGK-TEVNYTQLVDLHARYAEC----GLRILAFPCNQFGKQ   94 (183)
T ss_dssp             CGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCCSTTC
T ss_pred             CCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhcC----CeEEEEEECCCCCCC
Confidence            344556679999999999999999999999999999999997 999999999999999865    7999999997    3


Q ss_pred             CCCcHHHHHHHHHHhCCCeEEec
Q psy17592        132 ERDTPELVGKYVKEFSPKFIGLT  154 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~~~~~~~l~  154 (183)
                      +.++++.+++|+++++.+|+.+.
T Consensus        95 e~~~~~~~~~~~~~~~~~~p~~~  117 (183)
T 2obi_A           95 EPGSNEEIKEFAAGYNVKFDMFS  117 (183)
T ss_dssp             CCSCHHHHHHHHHTTTCCSEEBC
T ss_pred             CCCCHHHHHHHHHHcCCCceEEe
Confidence            45789999999999999999885

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.86  E-value=2.1e-21  Score=144.16  Aligned_cols=94  Identities=13%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----  131 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++++|++|.    
T Consensus        22 ~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~-C~~~~p~l~~l~~~~~~~----~v~vv~vs~d~~~~~   96 (181)
T 2p31_A           22 SMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGF-TDQHYRALQQLQRDLGPH----HFNVLAFPCNQFGQQ   96 (181)
T ss_dssp             -----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCCSTTC
T ss_pred             cCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCC-cHHHHHHHHHHHHHhhcC----CEEEEEEECcCCCCC
Confidence            344566679999999999999999999999999999999997 999999999999999865    79999999973    


Q ss_pred             CCCcHHHHHHHHHH-hCCCeEEec
Q psy17592        132 ERDTPELVGKYVKE-FSPKFIGLT  154 (183)
Q Consensus       132 ~~d~~~~~~~~~~~-~~~~~~~l~  154 (183)
                      +.++++.+++|+++ ++.+|+.+.
T Consensus        97 e~~~~~~~~~~~~~~~~~~~p~~~  120 (181)
T 2p31_A           97 EPDSNKEIESFARRTYSVSFPMFS  120 (181)
T ss_dssp             CCSCHHHHHHHHHHHHCCCSCBBC
T ss_pred             CCCCHHHHHHHHHhhcCCCceeEe
Confidence            34689999999999 999998874

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.86  E-value=7.7e-22  Score=150.83  Aligned_cols=109  Identities=22%  Similarity=0.252  Sum_probs=95.7

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCE-EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC-
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKW-ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER-  133 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~-vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~-  133 (183)
                      .+..+..+|+|+++|.+|+.+++++++||+ +||+||++|||+ |+.++|.|++++++++++    +++||+|++|+.. 
T Consensus        31 ~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~----~v~vv~Vs~d~~~~  105 (218)
T 3u5r_E           31 SITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPF-VVLIREALAKFAGDYAGQ----GLAVVAINSNDAQA  105 (218)
T ss_dssp             CCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHH-HHTTHHHHHHHHHHHTTT----TEEEEEEECSCTTT
T ss_pred             cCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCcc-HHHHHHHHHHHHHHHHhC----CcEEEEEECCcccc
Confidence            455677779999999999999999999995 999999999997 999999999999999865    7999999997432 


Q ss_pred             ---CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 ---DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 ---d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                         |+++.+++|+++++.+|+.+.+....   +++.||+...
T Consensus       106 ~~~d~~~~~~~~~~~~~~~~~~l~D~~~~---~~~~~~v~~~  144 (218)
T 3u5r_E          106 FPEETLERVGAEVKAYGYGFPYLKDASQS---VAKAYGAACT  144 (218)
T ss_dssp             CGGGSHHHHHHHHHHHTCCSCEEECTTCH---HHHHHTCCEE
T ss_pred             cccCCHHHHHHHHHHhCCCccEEECCccH---HHHHcCCCCC
Confidence               79999999999999999999886544   7888887643

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=148.49  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             cccCCCeEEEcCC-CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCC
Q psy17592         60 VAIGGKFELVDCN-NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERD  134 (183)
Q Consensus        60 ~~~~p~f~l~d~~-G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d  134 (183)
                      ...+|+|+++|.+ |+.++|++++||+|||+|||||||+ |+ |+|.|++++++++++    +++||+|++|.    +.+
T Consensus        32 ~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~-c~-e~p~L~~l~~~~~~~----g~~Vlgvs~d~f~~~e~~  105 (215)
T 2i3y_A           32 KGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGL-TA-QYPELNALQEELKPY----GLVVLGFPCNQFGKQEPG  105 (215)
T ss_dssp             CCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGG-GG-GHHHHHHHHHHHGGG----TEEEEEEECCCSTTCCCS
T ss_pred             cCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCC-hH-hHHHHHHHHHHhccC----CeEEEEEEccccCcCCCC
Confidence            3456999999999 9999999999999999999999998 99 999999999999866    79999999862    346


Q ss_pred             cHHHHHHHHH------HhCCCeEEec
Q psy17592        135 TPELVGKYVK------EFSPKFIGLT  154 (183)
Q Consensus       135 ~~~~~~~~~~------~~~~~~~~l~  154 (183)
                      +.+.+++|++      +++.+|+.+.
T Consensus       106 ~~~~i~~f~~~~~~~~~~~~~fpll~  131 (215)
T 2i3y_A          106 DNKEILPGLKYVRPGGGFVPSFQLFE  131 (215)
T ss_dssp             CHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             CHHHHHHHHHhccchhccCccceeEe
Confidence            7899999999      8999999875

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.85  E-value=3e-21  Score=146.70  Aligned_cols=87  Identities=10%  Similarity=0.107  Sum_probs=78.9

Q ss_pred             cCCCeEEEcCC-CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcH
Q psy17592         62 IGGKFELVDCN-NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTP  136 (183)
Q Consensus        62 ~~p~f~l~d~~-G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~  136 (183)
                      .+|+|+++|.+ |+.++|++++||+|||+|||||||+ | .|+|.|++++++++++    +++||+|++|.    +.++.
T Consensus        16 ~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~-c-~e~p~L~~l~~~~~~~----g~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGL-T-GQYIELNALQEELAPF----GLVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             CGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTT-T-THHHHHHHHHHHHGGG----TEEEEEEECCCBTTCCCSCH
T ss_pred             ccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCC-h-HHHHHHHHHHHHhccC----CEEEEEEECcccCcCCCCCH
Confidence            45999999999 9999999999999999999999998 9 7999999999999866    79999999762    34678


Q ss_pred             HHHHHHHH------HhCCCeEEec
Q psy17592        137 ELVGKYVK------EFSPKFIGLT  154 (183)
Q Consensus       137 ~~~~~~~~------~~~~~~~~l~  154 (183)
                      +.+++|++      +++.+|+.+.
T Consensus        90 ~~i~~f~~~~~~~~~~~~~fp~l~  113 (207)
T 2r37_A           90 SEILPTLKYVRPGGGFVPNFQLFE  113 (207)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             HHHHHHHHhcchhhccCccceeee
Confidence            99999999      8999999874

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.85  E-value=2e-21  Score=149.05  Aligned_cols=102  Identities=19%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             CCCcccCCCeEEEcC--CC--CeeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         57 LGKVAIGGKFELVDC--NN--KPVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~--~G--~~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +..+..+|+|+++|.  +|  +.++++++ +||++||+|| ++|||+ |+.++|.|++++++++++    +++||+|++|
T Consensus        25 l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~-C~~e~p~l~~l~~~~~~~----~v~vv~Is~D   99 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFV-CPTEIIEFNKHIKDFENK----NVELLGISVD   99 (221)
T ss_dssp             -CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTC-CHHHHHHHHHTHHHHHHT----TEEEEEEESS
T ss_pred             CCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEeCC
Confidence            345667799999999  99  99999999 9999999999 999997 999999999999999865    7999999987


Q ss_pred             CCCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCee
Q psy17592        131 PERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       131 p~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                          +++.+++|++++       +.+|+.+.+...   ++++.||+.
T Consensus       100 ----~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~---~~~~~ygv~  139 (221)
T 2c0d_A          100 ----SVYSHLAWKNMPIEKGGIGNVEFTLVSDINK---DISKNYNVL  139 (221)
T ss_dssp             ----CHHHHHHHHHSCGGGTCCCSCSSEEEECTTS---HHHHHTTCE
T ss_pred             ----CHHHHHHHHHHhhhhcCccCCceEEEECCch---HHHHHcCCc
Confidence                678899999998       788999887543   488999986

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.85  E-value=8.5e-22  Score=143.09  Aligned_cols=103  Identities=8%  Similarity=0.023  Sum_probs=90.7

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCC--EEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGK--WALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk--~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      +..+..+|+|+++|.+|+++++++++||  ++||+|| ++|||+ |+.++|.|++++++++++    + ++|+|+.|   
T Consensus         7 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~----~-~vv~is~d---   77 (159)
T 2a4v_A            7 LEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPG-STRQASGFRDNYQELKEY----A-AVFGLSAD---   77 (159)
T ss_dssp             CCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHH-HHHHHHHHHHHHHHHTTT----C-EEEEEESC---
T ss_pred             CCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCC-HHHHHHHHHHHHHHHHhC----C-cEEEEeCC---
Confidence            4556677999999999999999999887  8999997 999997 999999999999999865    6 99999987   


Q ss_pred             CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                       +++.+++|+++++.+|+.+.+...   ++++.||+...
T Consensus        78 -~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~gv~~~  112 (159)
T 2a4v_A           78 -SVTSQKKFQSKQNLPYHLLSDPKR---EFIGLLGAKKT  112 (159)
T ss_dssp             -CHHHHHHHHHHHTCSSEEEECTTC---HHHHHHTCBSS
T ss_pred             -CHHHHHHHHHHhCCCceEEECCcc---HHHHHhCCccc
Confidence             678999999999999999987543   48889998754

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.85  E-value=1.4e-21  Score=145.94  Aligned_cols=101  Identities=16%  Similarity=0.159  Sum_probs=89.1

Q ss_pred             cccCCCeEEEcC-CC--CeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         60 VAIGGKFELVDC-NN--KPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d~-~G--~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+|+|+++|. +|  +.+++++++||++||+||+ +|||+ |+.++|.|++++++++++    ++++|+|+.|    +
T Consensus         4 G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~-C~~e~~~l~~~~~~~~~~----~v~vv~Is~d----~   74 (186)
T 1n8j_A            4 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-SPTELGDVADHYEELQKL----GVDVYSVSTD----T   74 (186)
T ss_dssp             TCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSH-HHHHHHHHHHHHHHHHHT----TEEEEEEESS----C
T ss_pred             CCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCc-cHHHHHHHHHHHHHHHHC----CCEEEEEECC----C
Confidence            456699999999 59  8999999999999999995 99997 999999999999999865    7999999987    5


Q ss_pred             HHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ++.+++|++++    +.+|+.+.+...   .+++.||+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~fp~l~D~~~---~~~~~ygv~~~  112 (186)
T 1n8j_A           75 HFTHKAWHSSSETIAKIKYAMIGDPTG---ALTRNFDNMRE  112 (186)
T ss_dssp             HHHHHHHHHHCTTGGGCCSEEEECTTS---HHHHHTTCEET
T ss_pred             HHHHHHHHHHcCcccCCceeEEECCch---HHHHHhCCccC
Confidence            78899999999    889999987543   48899999753

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.85  E-value=1.2e-21  Score=143.96  Aligned_cols=102  Identities=13%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+|| ++|||+ |+.++|.|+++++++  +    ++++|+|+.|    +
T Consensus        21 l~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~-C~~~~~~l~~~~~~~--~----~v~vv~Is~d----~   89 (171)
T 2yzh_A           21 LKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPV-CETETKKFNEIMAGM--E----GVDVTVVSMD----L   89 (171)
T ss_dssp             CCTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHH-HHHHHHHHHHHTTTC--T----TEEEEEEESS----C
T ss_pred             CCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCc-hHHHHHHHHHHHHHc--C----CceEEEEeCC----C
Confidence            45566779999999999999999999999999999 899997 999999999999887  3    7999999987    5


Q ss_pred             HHHHHHHHHHhCC-CeEEecC-CHHHHHHHHhhcCeeEee
Q psy17592        136 PELVGKYVKEFSP-KFIGLTG-TVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~gv~~~~  173 (183)
                      ++.+++|+++++. +|+.+.+ ...   ++ +.||+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~D~~~~---~~-~~~gv~~~~  125 (171)
T 2yzh_A           90 PFAQKRFCESFNIQNVTVASDFRYR---DM-EKYGVLIGE  125 (171)
T ss_dssp             HHHHHHHHHHTTCCSSEEEECTTTC---GG-GGGTCBBCS
T ss_pred             HHHHHHHHHHcCCCCeEEeecCccC---cH-HHhCCEecc
Confidence            7889999999999 9999987 433   37 899987653

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.85  E-value=2.8e-21  Score=140.07  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=91.2

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCC-EEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGK-WALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      +..+..+|+|+++|.+|+.+++++++|| ++||+|| ++||++ |+.++|.|.+++++++++    ++++++|++|    
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~----~~~vv~is~d----   79 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGI-CQGELDQLRDHLPEFEND----DSAALAISVG----   79 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSH-HHHHHHHHHHTGGGTSSS----SEEEEEEESC----
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC----CcEEEEEeCC----
Confidence            4556677999999999999999999998 9999998 999997 999999999999998755    7999999987    


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      +++.+++|+++++.+|+.+.+. .....+++.||+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~v~~  115 (160)
T 1xvw_A           80 PPPTHKIWATQSGFTFPLLSDF-WPHGAVSQAYGVFN  115 (160)
T ss_dssp             CHHHHHHHHHHHTCCSCEEECT-TTTTHHHHHTTCEE
T ss_pred             CHHHHHHHHHhcCCCceEEecC-CcChHHHHHcCCcc
Confidence            6789999999999999998873 01134788899873

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.85  E-value=2.6e-22  Score=149.89  Aligned_cols=94  Identities=21%  Similarity=0.288  Sum_probs=84.0

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----C
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----P  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p  131 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++|+|++|    +
T Consensus        19 ~~~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~-C~~~~p~l~~l~~~~~~~----~~~vi~is~d~~~~~   93 (187)
T 3dwv_A           19 KMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGY-TKGGYETATTLYNKYKSQ----GFTVLAFPSNQFGGQ   93 (187)
T ss_dssp             -CTTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSC-CTTHHHHHHHHHHHHGGG----TCEEEEEEBCCCSSC
T ss_pred             hhcCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCC-cHHHHHHHHHHHHHhhhC----CeEEEEEECcccCCC
Confidence            355666779999999999999999999999999999999998 999999999999999876    7999999998    4


Q ss_pred             CCCcHHHHHHHHHH-hCCCeEEec
Q psy17592        132 ERDTPELVGKYVKE-FSPKFIGLT  154 (183)
Q Consensus       132 ~~d~~~~~~~~~~~-~~~~~~~l~  154 (183)
                      +.++++.+++|+++ ++.+|+.+.
T Consensus        94 e~~~~~~~~~~~~~~~~~~~p~~~  117 (187)
T 3dwv_A           94 EPGNEEEIKEFVCTKFKAEFPIMA  117 (187)
T ss_dssp             SSSBTTHHHHSCCBCCCCSSCBBC
T ss_pred             CCCCHHHHHHHHHhccCCCCceee
Confidence            55788999999994 599998874

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.85  E-value=5.2e-22  Score=143.59  Aligned_cols=107  Identities=21%  Similarity=0.299  Sum_probs=91.7

Q ss_pred             cccCCCeEEEc-CCCCeeecCccCCCEEEEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC---C
Q psy17592         60 VAIGGKFELVD-CNNKPVKSEDFLGKWALIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNITPIFISVDPER---D  134 (183)
Q Consensus        60 ~~~~p~f~l~d-~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~---d  134 (183)
                      +.+.|+|++++ .+|+.+++++++||++||+||++|||+ |..+ +|.|++++++++++    ++.+++|++|+++   +
T Consensus         6 g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~-C~~e~~~~l~~l~~~~~~~----~v~~v~v~~~~~~~~~~   80 (160)
T 3lor_A            6 NAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPG-CVNHGVPQAQKIHRMIDES----QVQVIGLHSVFEHHDVM   80 (160)
T ss_dssp             TCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHH-HHHTHHHHHHHHHHHSCTT----TEEEEEEECCCSCGGGS
T ss_pred             CCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcc-hhhhhhHHHHHHHHHhCcC----CcEEEEEeccccccccC
Confidence            44569999999 899999999999999999999999998 9996 99999999999765    7999999997542   6


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHH---HHHHHhhcCeeE
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQ---VAAACKAYRVYF  171 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~gv~~  171 (183)
                      +++.+++|+++++.+|+.+.+....   +..+++.||+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~  120 (160)
T 3lor_A           81 TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEG  120 (160)
T ss_dssp             CHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCS
T ss_pred             CHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCc
Confidence            8999999999999999988775432   233788888753

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.85  E-value=1.7e-21  Score=142.63  Aligned_cols=101  Identities=19%  Similarity=0.218  Sum_probs=89.5

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      .+..+..+|+|+++|.+|+.+++++++||+++|+|| ++|||+ |+.++|.|++++++   +    ++++|+|+.|    
T Consensus        19 ~l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~-C~~~~~~l~~~~~~---~----~~~vv~is~d----   86 (166)
T 3p7x_A           19 QINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGV-CDQQTRKFNSDASK---E----EGIVLTISAD----   86 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHH-HHHHHHHHHHHSCT---T----TSEEEEEESS----
T ss_pred             cCCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCc-cHHHHHHHHHHhhc---C----CCEEEEEECC----
Confidence            455667779999999999999999999999999999 789997 99999999999876   3    7999999976    


Q ss_pred             cHHHHHHHHHHhCC-CeEEecCC-HHHHHHHHhhcCeeE
Q psy17592        135 TPELVGKYVKEFSP-KFIGLTGT-VEQVAAACKAYRVYF  171 (183)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~gv~~  171 (183)
                      +++.+++|+++++. +|+.+.+. ..   ++++.||+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~D~~~~---~~~~~~gv~~  122 (166)
T 3p7x_A           87 LPFAQKRWCASAGLDNVITLSDHRDL---SFGENYGVVM  122 (166)
T ss_dssp             CHHHHHHHHHHHTCSSCEEEECTTTC---HHHHHHTCEE
T ss_pred             CHHHHHHHHHHcCCCceEEccCCchh---HHHHHhCCcc
Confidence            78999999999999 89999876 44   4899999885

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.85  E-value=1.7e-21  Score=147.30  Aligned_cols=105  Identities=19%  Similarity=0.178  Sum_probs=92.2

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+|| ++|||+ |+.++|.|+++++++  +    ++++|+||.|    
T Consensus        51 ~l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~-C~~e~~~l~~l~~~~--~----~v~vv~Is~D----  119 (200)
T 3zrd_A           51 LPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGV-CAASVRKFNQLAGEL--E----NTVVLCISSD----  119 (200)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSC-CCHHHHHHHHHHHTS--T----TEEEEEEESS----
T ss_pred             cCCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCch-hHHHHHHHHHHHHHh--C----CCEEEEEECC----
Confidence            455667779999999999999999999999999999 679997 999999999999988  3    7999999987    


Q ss_pred             cHHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        135 TPELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +++.+++|+++++. +|+.+.+..  ..++++.||+....
T Consensus       120 ~~~~~~~~~~~~~~~~f~~l~D~~--~~~~~~~ygv~~~~  157 (200)
T 3zrd_A          120 LPFAQSRFCGAEGLSNVITLSTLR--GADFKQAYGVAITE  157 (200)
T ss_dssp             CHHHHTTCTTTTTCTTEEEEETTS--CTHHHHHTTCEECS
T ss_pred             CHHHHHHHHHHcCCCCceEEecCc--hHHHHHHhCceeec
Confidence            68899999999999 999998751  23489999998654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.85  E-value=1.6e-21  Score=140.82  Aligned_cols=102  Identities=18%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      .+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++.+++|++|+   ..+.
T Consensus        11 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~----~~~vv~i~~d~---~~~~   82 (152)
T 2lrt_A           11 KEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAM-SAAHNLALRELYNKYASQ----GFEIYQISLDG---DEHF   82 (152)
T ss_dssp             CTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG----TEEEEEEECSC---CHHH
T ss_pred             cCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChh-hHHHHHHHHHHHHHhccC----CeEEEEEEccC---CHHH
Confidence            344569999999999999999999999999999999998 999999999999999865    79999999994   5677


Q ss_pred             HHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++|.++  .+|+.+.+.......+++.||+.
T Consensus        83 ~~~~~~~--~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           83 WKTSADN--LPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             HHHHHTT--CSSEEEECSSGGGCHHHHHHTCC
T ss_pred             HHHHHhC--CCceEEECCCCcchHHHHHcCcc
Confidence            8888754  78999888766555688888875

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.85  E-value=2.7e-21  Score=144.55  Aligned_cols=94  Identities=21%  Similarity=0.308  Sum_probs=83.7

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----C
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----P  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p  131 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++++|+|++|    +
T Consensus        21 ~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~-C~~~~~~l~~l~~~~~~~----~v~vv~vs~d~~~~~   95 (190)
T 2vup_A           21 HMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGY-TKGGYETATTLYNKYKSQ----GFTVLAFPCNQFGGQ   95 (190)
T ss_dssp             ---CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TCEEEEEECCCSTTC
T ss_pred             cCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCc-cHHHHHHHHHHHHHHhcC----CeEEEEEEcCccCCC
Confidence            344566679999999999999999999999999999999997 999999999999999865    7999999998    4


Q ss_pred             CCCcHHHHHHHH-HHhCCCeEEec
Q psy17592        132 ERDTPELVGKYV-KEFSPKFIGLT  154 (183)
Q Consensus       132 ~~d~~~~~~~~~-~~~~~~~~~l~  154 (183)
                      +.++++.+++|+ ++++.+|+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~p~l~  119 (190)
T 2vup_A           96 EPGNEEEIKEFVCTKFKAEFPIMA  119 (190)
T ss_dssp             CCSCHHHHHHHHHHHHCCCSCBBC
T ss_pred             CCCCHHHHHHHHHHhcCCCeEEEe
Confidence            567899999999 89999999885

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.85  E-value=1.9e-21  Score=145.31  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=91.9

Q ss_pred             CCCcccCCCeEEEcC--CC-CeeecCc-cCCCEE-EEEEEcCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCee-EEEEEe
Q psy17592         57 LGKVAIGGKFELVDC--NN-KPVKSED-FLGKWA-LIYFGFTHCPDICPD-ELEKMAAVVNKIDGQPNVPNIT-PIFISV  129 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~--~G-~~v~l~~-~~gk~v-ll~f~~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v~-~v~Is~  129 (183)
                      +..+..+|+|++++.  +| +.+++++ ++||++ |++||++|||+ |+. |+|.|++++++++++    +++ +++||.
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~-C~~~e~p~l~~~~~~~~~~----gv~~vv~Is~  100 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPT-CSLNHLPGYLENRDAILAR----GVDDIAVVAV  100 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHH-HHHTHHHHHHHTHHHHHTT----TCCEEEEEES
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCC-cCHHHHHHHHHHHHHHHHc----CCCEEEEEEC
Confidence            456677799999998  99 9999999 899965 55678999997 999 899999999999876    788 999998


Q ss_pred             CCCCCcHHHHHHHHHHhCCC--eEEecCCHHHHHHHHhhcCeeEee
Q psy17592        130 DPERDTPELVGKYVKEFSPK--FIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      |    +++.+++|+++++.+  |+.+.+...   +++++||+....
T Consensus       101 d----~~~~~~~f~~~~~~~~~fp~l~D~~~---~va~~yGv~~~~  139 (184)
T 3uma_A          101 N----DLHVMGAWATHSGGMGKIHFLSDWNA---AFTKAIGMEIDL  139 (184)
T ss_dssp             S----CHHHHHHHHHHHTCTTTSEEEECTTC---HHHHHTTCEEEE
T ss_pred             C----CHHHHHHHHHHhCCCCceEEEEcCch---HHHHHcCCceec
Confidence            7    688999999999998  999988654   499999998764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.85  E-value=5.3e-21  Score=137.23  Aligned_cols=100  Identities=25%  Similarity=0.345  Sum_probs=89.4

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      +..+|+|++.|.+|+.+++++++||++||+||++|||+ |+.++|.|.++++++.++    ++.++.|++|   ++++.+
T Consensus         3 G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~-C~~~~~~l~~~~~~~~~~----~v~vv~v~~d---~~~~~~   74 (151)
T 2f9s_A            3 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ----GVEIVAVNVG---ESKIAV   74 (151)
T ss_dssp             CEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG----TEEEEEEEES---CCHHHH
T ss_pred             CCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhccC----CeEEEEEECC---CCHHHH
Confidence            44569999999999999999999999999999999997 999999999999999765    7999999998   467999


Q ss_pred             HHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        140 GKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       140 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++|+++++.+|+.+.+....   +++.||+.
T Consensus        75 ~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  102 (151)
T 2f9s_A           75 HNFMKSYGVNFPVVLDTDRQ---VLDAYDVS  102 (151)
T ss_dssp             HHHHHHHTCCSCEEEETTSH---HHHHTTCC
T ss_pred             HHHHHHcCCCceEEECCchH---HHHhcCCC
Confidence            99999999999998876444   77888864

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=147.49  Aligned_cols=104  Identities=18%  Similarity=0.218  Sum_probs=90.1

Q ss_pred             cCCCcccCCCeEEEcC---CCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         56 NLGKVAIGGKFELVDC---NNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~---~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+..+..+|+|++++.   +|+.+++++++||++||+|| ++|||+ |+.++|.|++++++++++    +++||+|++| 
T Consensus        18 ~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~-C~~e~~~l~~l~~~~~~~----~v~vv~Is~D-   91 (211)
T 2pn8_A           18 LYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFV-CPTEIIAFGDRLEEFRSI----NTEVVACSVD-   91 (211)
T ss_dssp             -CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHTHHHHHTT----TEEEEEEESS-
T ss_pred             cCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEECC-
Confidence            3455667799999984   56899999999999999999 999997 999999999999999865    8999999997 


Q ss_pred             CCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        132 ERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                         +++.+++|++++       +.+|+.+.+..   .++++.||+.+
T Consensus        92 ---~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~---~~~~~~ygv~~  132 (211)
T 2pn8_A           92 ---SQFTHLAWINTPRRQGGLGPIRIPLLSDLT---HQISKDYGVYL  132 (211)
T ss_dssp             ---CHHHHHHHHTSCGGGTCCCSCSSCEEECTT---SHHHHHTTCEE
T ss_pred             ---CHHHHHHHHHHhhhccCccCCceEEEECCc---hHHHHHcCCcc
Confidence               678899999988       78899888754   35899999975

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.84  E-value=6.4e-21  Score=141.85  Aligned_cols=107  Identities=21%  Similarity=0.273  Sum_probs=93.6

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC---
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER---  133 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~---  133 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+||++||++ |..++|.|+++++++.+     .+++++|++|+..   
T Consensus         7 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~-----~~~~v~v~~d~~~~~~   80 (188)
T 2cvb_A            7 LPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPY-VKGSIGELVALAERYRG-----KVAFVGINANDYEKYP   80 (188)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHH-HHTTHHHHHHHHHHTTT-----TEEEEEEECCCTTTCG
T ss_pred             CCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHhhc-----CeEEEEEEcCcccccc
Confidence            44566679999999999999999999999999999999998 99999999999999863     2999999998653   


Q ss_pred             -CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 -DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 -d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                       |+.+.+++|+++++.+|+.+.+....   +++.||+...
T Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~~~  117 (188)
T 2cvb_A           81 EDAPEKMAAFAEEHGIFFPYLLDETQE---VAKAYRALRT  117 (188)
T ss_dssp             GGSHHHHHHHHHHHTCCSCEEECSSSH---HHHHTTCCEE
T ss_pred             ccCHHHHHHHHHHhCCCceEEECCcch---HHHHcCCCCC
Confidence             78999999999999999998875444   7888887643

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.84  E-value=9.9e-21  Score=134.12  Aligned_cols=106  Identities=13%  Similarity=0.275  Sum_probs=93.2

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE  137 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~  137 (183)
                      ..+...|+|+++|.+|+.+++++ +||++||+||++||++ |+.++|.|.++++++.+.    ++.++.|++|...++++
T Consensus        10 ~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~----~~~~v~v~~d~~~~~~~   83 (145)
T 3erw_A           10 KQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPP-CKKELPQFQSFYDAHPSD----SVKLVTVNLVNSEQNQQ   83 (145)
T ss_dssp             --CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHH-HHHHHHHHHHHHHHCCCS----SEEEEEEECGGGSSCHH
T ss_pred             cCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcCCC----CEEEEEEEccCCcCCHH
Confidence            44566699999999999999999 9999999999999998 999999999999998754    79999999997777999


Q ss_pred             HHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      .+++|.++++.+|+.+.+....   +++.||+...
T Consensus        84 ~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~~~  115 (145)
T 3erw_A           84 VVEDFIKANKLTFPIVLDSKGE---LMKEYHIITI  115 (145)
T ss_dssp             HHHHHHHHTTCCSCEEECSSSH---HHHHTTCCEE
T ss_pred             HHHHHHHHcCCceeEEEcCchh---HHHhcCcCcc
Confidence            9999999999999998876544   7888887643

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.84  E-value=4.7e-21  Score=143.28  Aligned_cols=108  Identities=20%  Similarity=0.265  Sum_probs=94.3

Q ss_pred             CCCcccCCCeEEE-cCCCCeeecCccCCCE-EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC-
Q psy17592         57 LGKVAIGGKFELV-DCNNKPVKSEDFLGKW-ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER-  133 (183)
Q Consensus        57 ~~~~~~~p~f~l~-d~~G~~v~l~~~~gk~-vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~-  133 (183)
                      +..+..+|+|+++ |.+|+.+++++++||+ +||+||++||++ |+.++|.|+++++++.++    ++.+++|++|+.. 
T Consensus        18 ~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~----~v~vv~v~~d~~~~   92 (196)
T 2ywi_A           18 FPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPF-VKHVQHELVRLANDYMPK----GVSFVAINSNDAEQ   92 (196)
T ss_dssp             CCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHH-HHHHHHHHHHHHHHHGGG----TCEEEEEECSCTTT
T ss_pred             CCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCcc-HHHHHHHHHHHHHHHHhC----CcEEEEEECCcccc
Confidence            4456667999999 9999999999999984 999999999997 999999999999999865    7999999998754 


Q ss_pred             ---CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 ---DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 ---d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                         |+++.+++|+++++.+|+.+.+....   +++.||+...
T Consensus        93 ~~~d~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~~~  131 (196)
T 2ywi_A           93 YPEDSPENMKKVAEELGYPFPYLYDETQE---VAKAYDAACT  131 (196)
T ss_dssp             CGGGSHHHHHHHHHHHTCCSCEEECSSCH---HHHHHTCCEE
T ss_pred             ccccCHHHHHHHHHHcCCCceEEECCchH---HHHHhCCCCC
Confidence               78999999999999999998875444   7788887543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.84  E-value=1.4e-20  Score=140.15  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=90.2

Q ss_pred             CcccCCCeEEEcCCCC----eeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         59 KVAIGGKFELVDCNNK----PVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~----~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      .+..+|+|+++|.+|+    .+++++++||++||+|| ++|||+ |+.++|.|++++++++++    ++++++|++|   
T Consensus         3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~----~v~vv~vs~d---   74 (187)
T 1we0_A            3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFV-CPTELEDVQKEYAELKKL----GVEVYSVSTD---   74 (187)
T ss_dssp             TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSS-CTHHHHHHHHHHHHHHHT----TEEEEEEESS---
T ss_pred             CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcc-hHHHHHHHHHHHHHHHHc----CCEEEEEECC---
Confidence            3456699999999999    99999999999999999 999997 999999999999999865    7999999998   


Q ss_pred             CcHHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        134 DTPELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       134 d~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                       +++.+++|++++    +.+|+.+.+..   .++++.||+.++
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~v~~~  113 (187)
T 1we0_A           75 -THFVHKAWHENSPAVGSIEYIMIGDPS---QTISRQFDVLNE  113 (187)
T ss_dssp             -CHHHHHHHHHSCHHHHTCCSEEEECTT---CHHHHHTTCEET
T ss_pred             -CHHHHHHHHHHhccccCCCceEEECCc---hHHHHHhCCCcC
Confidence             478899999998    79999988754   348899999853

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.84  E-value=3.6e-21  Score=142.18  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=84.6

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+||++| |++ |+.++|.|++++++   +    ++++|+|+.|    +
T Consensus        18 l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~-C~~~~~~l~~l~~~---~----~v~vv~Is~D----~   85 (175)
T 1xvq_A           18 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPV-CATSVRTFDERAAA---S----GATVLCVSKD----L   85 (175)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSC-CCHHHHHHHHHHHH---T----TCEEEEEESS----C
T ss_pred             CCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCch-HHHHHHHHHHHHhh---c----CCEEEEEECC----C
Confidence            45566779999999999999999999999999999999 997 99999999999987   3    7999999987    6


Q ss_pred             HHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ++.+++|+++++. +|+.+.+..   ..+++.||+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~gv~~~  120 (175)
T 1xvq_A           86 PFAQKRFCGAEGTENVMPASAFR---DSFGEDYGVTIA  120 (175)
T ss_dssp             HHHHTTCC------CEEEEECTT---SSHHHHTTCBBC
T ss_pred             HHHHHHHHHHcCCCCceEeeCCH---HHHHHHhCCccc
Confidence            7889999999998 899988754   348899998765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.5e-21  Score=141.45  Aligned_cols=88  Identities=18%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----CCCCcHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----PERDTPE  137 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p~~d~~~  137 (183)
                      ..|+|+++|.+|+.+++++++||++||+||++||++ |+ ++|.|++++++++++    ++++|+|++|    ++.|+++
T Consensus        11 ~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~-C~-~~~~l~~l~~~~~~~----~v~vv~vs~d~~~~~~~d~~~   84 (171)
T 3cmi_A           11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGF-TP-QYKELEALYKRYKDE----GFTIIGFPCNQFGHQEPGSDE   84 (171)
T ss_dssp             GGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCC-HH-HHHHHHHHHHHHGGG----TEEEEEEEECSCC--------
T ss_pred             heeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCc-ch-hHHHHHHHHHHhccC----CeEEEEEECcccCCCCCCCHH
Confidence            349999999999999999999999999999999998 99 999999999999865    7999999996    3457889


Q ss_pred             HHHHHH-HHhCCCeEEecC
Q psy17592        138 LVGKYV-KEFSPKFIGLTG  155 (183)
Q Consensus       138 ~~~~~~-~~~~~~~~~l~~  155 (183)
                      .+++|+ ++++.+|+.+.+
T Consensus        85 ~~~~~~~~~~~~~~p~~~d  103 (171)
T 3cmi_A           85 EIAQFCQLNYGVTFPIMKK  103 (171)
T ss_dssp             ----------CCCSCBBCC
T ss_pred             HHHHHHHhccCCCceEEee
Confidence            999999 999999998864

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.83  E-value=5.5e-21  Score=141.43  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=90.8

Q ss_pred             hcCCCcccCCCeEEE-cCCCCeeecCc-cCCCEEEE-EEEcCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCeeEEE-EEe
Q psy17592         55 RNLGKVAIGGKFELV-DCNNKPVKSED-FLGKWALI-YFGFTHCPDICPD-ELEKMAAVVNKIDGQPNVPNITPIF-ISV  129 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~-d~~G~~v~l~~-~~gk~vll-~f~~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v~~v~-Is~  129 (183)
                      ..+..+..+|+|+++ +.+|+.++|++ ++||+++| +||++|||+ |.. |+|.|++++++++++    ++++|+ ||.
T Consensus        13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~-C~~~e~p~l~~~~~~~~~~----gv~vv~~iS~   87 (173)
T 3mng_A           13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPG-CSKTHLPGFVEQAEALKAK----GVQVVACLSV   87 (173)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHH-HHHTHHHHHHHTHHHHHTT----TCCEEEEEES
T ss_pred             CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhC----CCEEEEEEcC
Confidence            345566677999999 99999999999 59997655 567999997 994 999999999999876    899997 998


Q ss_pred             CCCCCcHHHHHHHHHHhCCC--eEEecCCHHHHHHHHhhcCeeEe
Q psy17592        130 DPERDTPELVGKYVKEFSPK--FIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      |    +++.+++|+++++.+  |+.+.+...   +++++||+..+
T Consensus        88 D----~~~~~~~f~~~~~~~~~fp~l~D~~~---~va~~yGv~~~  125 (173)
T 3mng_A           88 N----DAFVTGEWGRAHKAEGKVRLLADPTG---AFGKETDLLLD  125 (173)
T ss_dssp             S----CHHHHHHHHHHTTCTTTCEEEECTTC---HHHHHHTCBCC
T ss_pred             C----CHHHHHHHHHHhCCCCceEEEECCCh---HHHHHhCCCcc
Confidence            7    688999999999987  999988654   49999999865

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.83  E-value=7.8e-21  Score=140.81  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=88.4

Q ss_pred             CcccCCCeEEEcC--CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCC--CCCeeEEEEEeCCCCC
Q psy17592         59 KVAIGGKFELVDC--NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPN--VPNITPIFISVDPERD  134 (183)
Q Consensus        59 ~~~~~p~f~l~d~--~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~--~~~v~~v~Is~dp~~d  134 (183)
                      .+..+|+|++++.  +|+.+++++++||++||+||++|||+ |+.++|.|+++++++++++.  .++++|++|++|.  +
T Consensus        33 ~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~--~  109 (183)
T 3lwa_A           33 DRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAP-CRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD--Y  109 (183)
T ss_dssp             GCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC--C
T ss_pred             cCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHh-HHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC--C
Confidence            4456699999999  99999999999999999999999998 99999999999999986510  1233999999983  3


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR  168 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  168 (183)
                      +++.+++|+++++.+|+.+.+....   +.+.||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~  140 (183)
T 3lwa_A          110 SRDIAQDFVTDNGLDYPSIYDPPFM---TAASLG  140 (183)
T ss_dssp             CHHHHHHHHHHTTCCSCEEECTTCG---GGGGTT
T ss_pred             CHHHHHHHHHHcCCCccEEECCcch---HHHHhc
Confidence            7999999999999999999887554   566665

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.83  E-value=1.7e-20  Score=134.72  Aligned_cols=102  Identities=21%  Similarity=0.320  Sum_probs=90.9

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      .+..+|+|+++|.+|+.+++++++||++||+||++||++ |..+++.|.++++++.+.    ++.+++|++|+  ++++.
T Consensus         4 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~-C~~~~~~l~~~~~~~~~~----~~~~v~v~~d~--~~~~~   76 (154)
T 3kcm_A            4 EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPP-CREEIPSMMRLNAAMAGK----PFRMLCVSIDE--GGKVA   76 (154)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTS----SEEEEEEECCT--THHHH
T ss_pred             CCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhccC----CeEEEEEEcCC--cchHH
Confidence            355669999999999999999999999999999999997 999999999999999765    79999999994  46899


Q ss_pred             HHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++|+++++.+|+.+.+....   +++.||+.
T Consensus        77 ~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  105 (154)
T 3kcm_A           77 VEEFFRKTGFTLPVLLDADKR---VGKLYGTT  105 (154)
T ss_dssp             HHHHHHHHCCCCCEEECTTCH---HHHHHTCC
T ss_pred             HHHHHHHcCCCeeEEecCchH---HHHHhCCC
Confidence            999999999999999876554   77778764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.83  E-value=5.9e-21  Score=137.19  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=83.5

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      |+|.+. .+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++    ++.+++|++|    +.+.+++|+
T Consensus         6 ~~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~----~v~vv~v~~d----~~~~~~~~~   75 (151)
T 3raz_A            6 DELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGP-CRKEMPAMSKWYKAQKKG----SVDMVGIALD----TSDNIGNFL   75 (151)
T ss_dssp             -CEEET-TTCCEECGGGCCSSEEEEEEECTTCHH-HHHHHHHHHHHHHTSCTT----TEEEEEEESS----CHHHHHHHH
T ss_pred             chhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhccC----CeEEEEEECC----ChHHHHHHH
Confidence            444443 799999999999999999999999998 999999999999998654    8999999997    578999999


Q ss_pred             HHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592        144 KEFSPKFIGLTGTVEQVAAACKAYR  168 (183)
Q Consensus       144 ~~~~~~~~~l~~~~~~~~~~~~~~g  168 (183)
                      ++++.+|+.+.++......+++.||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~  100 (151)
T 3raz_A           76 KQTPVSYPIWRYTGANSRNFMKTYG  100 (151)
T ss_dssp             HHSCCSSCEEEECCSCHHHHHHTTT
T ss_pred             HHcCCCCceEecCccchHHHHHHhC
Confidence            9999999998876556667999998

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.83  E-value=3.3e-20  Score=132.95  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=91.1

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+..+|+|+++| +|+.+++++++||++||+||++|||+ |..+++.|.++++++.++    ++.+++|++|+   +.
T Consensus         3 l~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~-C~~~~~~l~~l~~~~~~~----~~~~v~v~~d~---~~   73 (152)
T 3gl3_A            3 LDKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGP-CRQSFPWMNQMQAKYKAK----GFQVVAVNLDA---KT   73 (152)
T ss_dssp             CCTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTH-HHHHHHHHHHHHHHHGGG----TEEEEEEECCS---SH
T ss_pred             CCCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC----CeEEEEEECCC---CH
Confidence            34566779999999 99999999999999999999999998 999999999999999865    79999999994   68


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+++|+++++.+|+.+.+....   +++.||+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  104 (152)
T 3gl3_A           74 GDAMKFLAQVPAEFTVAFDPKGQ---TPRLYGVK  104 (152)
T ss_dssp             HHHHHHHHHSCCCSEEEECTTCH---HHHHTTCC
T ss_pred             HHHHHHHHHcCCCCceeECCcch---hHHHcCCC
Confidence            89999999999999999886554   78888875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.83  E-value=2.4e-20  Score=133.81  Aligned_cols=101  Identities=27%  Similarity=0.434  Sum_probs=90.2

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      +..+|+|+++|.+|+.+++++++||++||+||++|||+ |..+++.|+++++++.++    ++.+++|++|  .|+.+.+
T Consensus         5 G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~l~~~~~~~----~~~vv~v~~~--~~~~~~~   77 (153)
T 2l5o_A            5 SKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDYKNK----NFQVLAVAQP--IDPIESV   77 (153)
T ss_dssp             CTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTT-HHHHHHHHHHHHHHGGGT----TEEEEEEECT--TSCHHHH
T ss_pred             CCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHhccC----CeEEEEEecC--CCCHHHH
Confidence            44569999999999999999999999999999999998 999999999999999865    7999999988  4789999


Q ss_pred             HHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        140 GKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       140 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++|+++++.+|+.+.+....   +++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~d~~~~---~~~~~~i~  105 (153)
T 2l5o_A           78 RQYVKDYGLPFTVMYDADKA---VGQAFGTQ  105 (153)
T ss_dssp             HHHHHHTTCCSEEEECSSCH---HHHHHTCC
T ss_pred             HHHHHHcCCCceEEcCchHH---HHHHcCCC
Confidence            99999999999998775444   77788865

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.83  E-value=5.9e-21  Score=148.19  Aligned_cols=106  Identities=20%  Similarity=0.217  Sum_probs=91.1

Q ss_pred             hcCCCcccCCCeEEEc---CCCCeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         55 RNLGKVAIGGKFELVD---CNNKPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~d---~~G~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..+..+..+|+|++++   .+|+++++++++||++||+||+ +|||+ |+.++|.|++++++++++    ++++|+||.|
T Consensus        46 ~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~-C~~el~~l~~l~~~~~~~----gv~vv~Is~D  120 (240)
T 3qpm_A           46 SKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFV-CPTEIIAFSDRVHEFRAI----NTEVVACSVD  120 (240)
T ss_dssp             CSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHHHHHHHTT----TEEEEEEESS
T ss_pred             CcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEECC
Confidence            3455677789999875   4567999999999999999999 99997 999999999999999876    8999999987


Q ss_pred             CCCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        131 PERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       131 p~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                          +++.+++|++++       +.+|+.+.+...   ++++.||+..+
T Consensus       121 ----~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~---~v~~~ygv~~~  162 (240)
T 3qpm_A          121 ----SQFTHLAWIITPRKQGGLGPMKIPLLSDLTH---QISKDYGVYLE  162 (240)
T ss_dssp             ----CHHHHHHHHHSCGGGTCCCSCSSCEEECTTS---HHHHHTTCEET
T ss_pred             ----CHHHHHHHHHHHHhhcCCCCCceeEEeCchH---HHHHHhCCccc
Confidence                578889999987       789999987653   59999999853

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.83  E-value=1.3e-20  Score=139.87  Aligned_cols=105  Identities=21%  Similarity=0.317  Sum_probs=89.1

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++||++ |+.+++.|++++++++++    ++++++|++|.  ++
T Consensus        33 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~----~~~vv~v~~d~--~~  105 (186)
T 1jfu_A           33 MASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSGP----NFEVVAINIDT--RD  105 (186)
T ss_dssp             ECCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHCBT----TEEEEEEECCC--SC
T ss_pred             cccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHh-HHHHHHHHHHHHHHhccC----CcEEEEEECCC--CC
Confidence            345566779999999999999999999999999999999997 999999999999999754    89999999994  45


Q ss_pred             HHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        136 PELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++.+++|+++++. .|+.+.+....   +.+.||+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~  138 (186)
T 1jfu_A          106 PEKPKTFLKEANLTRLGYFNDQKAK---VFQDLKAI  138 (186)
T ss_dssp             TTHHHHHHHHTTCCTTCCEECTTCH---HHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCceEECCcch---HHHHhccc
Confidence            6789999999998 57777765443   66666653

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.83  E-value=1.2e-20  Score=144.74  Aligned_cols=106  Identities=20%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             hcCCCcccCCCeEEEcC---CCCeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         55 RNLGKVAIGGKFELVDC---NNKPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~d~---~G~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..+..+..+|+|++++.   +|+++++++++||++||+||+ +||++ |+.++|.|++++++++++    +++||+|++|
T Consensus        38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~-C~~~~p~l~~l~~~~~~~----~v~vv~Is~D  112 (222)
T 3ztl_A           38 MVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFV-CPTEIIAFSDQVEEFNSR----NCQVIACSTD  112 (222)
T ss_dssp             --CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSH-HHHHHHHHHHTHHHHHTT----TEEEEEEESS
T ss_pred             ccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEECC
Confidence            34667777899999955   559999999999999999997 99997 999999999999999865    7999999997


Q ss_pred             CCCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        131 PERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       131 p~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                          +++..++|++.+       +.+|+.+.+...   .+++.||+.+.
T Consensus       113 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~ygv~~~  154 (222)
T 3ztl_A          113 ----SQYSHLAWDNLDRKSGGLGHMKIPLLADRKQ---EISKAYGVFDE  154 (222)
T ss_dssp             ----CHHHHHHHHHSCGGGTSCCSCSSCEEECSSS---HHHHHTTCBCT
T ss_pred             ----CHHHHHHHHHHhhhhccccccceeEEeCCch---HHHHHcCCeec
Confidence                567888898887       899999988653   48899998743

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.83  E-value=5e-21  Score=136.25  Aligned_cols=105  Identities=14%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+||++||++ |..++|.|.+++++++++    ++.+++|++|   +++
T Consensus         5 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~-C~~~~~~l~~l~~~~~~~----~~~~v~v~~d---~~~   76 (148)
T 3hcz_A            5 LLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGH-CQQETPKLYDWWLKNRAK----GIQVYAANIE---RKD   76 (148)
T ss_dssp             CCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCT-TCSHHHHHHHHHHHHGGG----TEEEEEEECC---SSS
T ss_pred             cCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHhccC----CEEEEEEEec---CCH
Confidence            34566779999999999999999999999999999999998 999999999999999865    7999999998   566


Q ss_pred             HHHHHHHHHhCCC-eEEecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPK-FIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+++|+++++.+ |+.+.+.... ..+++.||+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~  110 (148)
T 3hcz_A           77 EEWLKFIRSKKIGGWLNVRDSKNH-TDFKITYDIY  110 (148)
T ss_dssp             HHHHHHHHHHTCTTSEEEECTTCC-CCHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCceEEeccccc-hhHHHhcCcC
Confidence            7999999999988 8888765332 2267778764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.83  E-value=3.1e-20  Score=139.35  Aligned_cols=103  Identities=16%  Similarity=0.234  Sum_probs=90.4

Q ss_pred             CCCcccCCCeEEEcCC-------------C--CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCC
Q psy17592         57 LGKVAIGGKFELVDCN-------------N--KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVP  120 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~-------------G--~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~  120 (183)
                      +..+..+|+|++++.+             |  +.+++++++||++||+|| ++|||+ |+.++|.|.+++++++++    
T Consensus         4 l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~l~~~~~~~----   78 (195)
T 2bmx_A            4 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFV-CPTEIAAFSKLNDEFEDR----   78 (195)
T ss_dssp             CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCC-CHHHHHHHHHTHHHHHTT----
T ss_pred             CCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCC-cHHHHHHHHHHHHHHHHC----
Confidence            3456677999999998             7  899999999999999999 999997 999999999999999865    


Q ss_pred             CeeEEEEEeCCCCCcHHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        121 NITPIFISVDPERDTPELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       121 ~v~~v~Is~dp~~d~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      ++++|+|++|    +++.+++|++++    +.+|+.+.+..   ..+++.||+.+
T Consensus        79 ~v~vv~Vs~d----~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~v~~  126 (195)
T 2bmx_A           79 DAQILGVSID----SEFAHFQWRAQHNDLKTLPFPMLSDIK---RELSQAAGVLN  126 (195)
T ss_dssp             TEEEEEEESS----CHHHHHHHHHHCTTGGGCCSCEEECTT---SHHHHHHTCBC
T ss_pred             CCEEEEEECC----CHHHHHHHHHHhccccCCceeEEeCCc---hHHHHHhCCcc
Confidence            7999999998    478999999998    88999888754   34888899873

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.83  E-value=1.9e-20  Score=136.27  Aligned_cols=98  Identities=19%  Similarity=0.393  Sum_probs=87.9

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC-----------
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD-----------  130 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d-----------  130 (183)
                      ..|+|+++|.+|+.+++++++||++||+||++|||+ |..++|.|.+++++++      ++.|++|++|           
T Consensus        16 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~-C~~~~~~l~~l~~~~~------~v~vv~i~~d~~~~~~~~~~~   88 (165)
T 3ha9_A           16 REASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPS-CVYMADLLDRLTEKYR------EISVIAIDFWTAEALKALGLN   88 (165)
T ss_dssp             HHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTT-HHHHHHHHHHHHHHCT------TEEEEEEECCSHHHHHHHTCC
T ss_pred             cCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcc-hhhhHHHHHHHHHHcC------CcEEEEEEecccccccccccc
Confidence            349999999999999999999999999999999998 9999999999999874      6999999998           


Q ss_pred             ----CCCCcHHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        131 ----PERDTPELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       131 ----p~~d~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                          ++.++++.+++|+++++. +|+.+.+ .   ..+++.||+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~---~~~~~~~~v~  129 (165)
T 3ha9_A           89 KPGYPPPDTPEMFRKFIANYGDPSWIMVMD-D---GSLVEKFNVR  129 (165)
T ss_dssp             STTSCCCCCHHHHHHHHHHHSCTTSEEEEC-C---SHHHHHTTCC
T ss_pred             cccCCCCCCHHHHHHHHHHcCCCCeeEEeC-h---HHHHHHhCCC
Confidence                344789999999999999 9999988 3   3488888865

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.82  E-value=2.1e-21  Score=141.91  Aligned_cols=102  Identities=16%  Similarity=0.163  Sum_probs=88.9

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++| ||+ |+.++|.|+++++++  .    ++++++|+.|    
T Consensus        17 ~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~-C~~~~~~l~~l~~~~--~----~~~vv~is~d----   85 (167)
T 2jsy_A           17 EVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGV-CDAQTRRFNEEAAKL--G----DVNVYTISAD----   85 (167)
T ss_dssp             CCCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSH-HHHTHHHHHHHHHHH--S----SCEEEEEECS----
T ss_pred             ccCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCc-hHHHHHHHHHHHHHc--C----CCEEEEEECC----
Confidence            345566779999999999999999999999999999999 997 999999999999998  3    7999999997    


Q ss_pred             cHHHHHHHHHHhCC-CeEEecC-CHHHHHHHHhhcCeeE
Q psy17592        135 TPELVGKYVKEFSP-KFIGLTG-TVEQVAAACKAYRVYF  171 (183)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~gv~~  171 (183)
                      +++.+++|+++++. +|+.+.+ ..   .++++.||+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~v~~  121 (167)
T 2jsy_A           86 LPFAQARWCGANGIDKVETLSDHRD---MSFGEAFGVYI  121 (167)
T ss_dssp             SGGGTSCCGGGSSCTTEEEEEGGGT---CHHHHHTTCBB
T ss_pred             CHHHHHHHHHhcCCCCceEeeCCch---hHHHHHhCCcc
Confidence            45678899999999 8999876 33   34788899875

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.82  E-value=1.5e-20  Score=143.36  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             cCCCcccCCCeEEEcC--CC--CeeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         56 NLGKVAIGGKFELVDC--NN--KPVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~--~G--~~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      .+..+..+|+|++++.  +|  +.++++++ +||++||+|| ++|||+ |+.++|.|++++++++++    +++||+|++
T Consensus        20 ~l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~-C~~~~~~l~~l~~~~~~~----~v~vv~Is~   94 (213)
T 2i81_A           20 PTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFV-CPSEIIALDKALDAFHER----NVELLGCSV   94 (213)
T ss_dssp             CCCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSH-HHHHHHHHHHTHHHHHHT----TEEEEEEES
T ss_pred             cccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEeC
Confidence            3455667799999999  89  89999999 9999999999 999997 999999999999999865    899999999


Q ss_pred             CCCCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        130 DPERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      |    +++.+++|++++       +.+|+.+.+...   ++++.||+.+
T Consensus        95 D----~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~---~~~~~ygv~~  136 (213)
T 2i81_A           95 D----SKYTHLAWKKTPLAKGGIGNIKHTLLSDITK---SISKDYNVLF  136 (213)
T ss_dssp             S----CHHHHHHHHSSCGGGTCCCSCSSEEEECTTS---HHHHHTTCEE
T ss_pred             C----CHHHHHHHHHHHHhhCCccCCCceEEECCch---HHHHHhCCcc
Confidence            7    678999999988       789999987543   4899999984

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.82  E-value=1.1e-19  Score=131.77  Aligned_cols=99  Identities=24%  Similarity=0.330  Sum_probs=88.5

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      ...+..+|+|+++|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++    ++.+++|++|   +++
T Consensus         8 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~l~~~~~~~----~v~~v~v~~d---~~~   79 (165)
T 3or5_A            8 DARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPP-CRSEIPDMVQVQKTWASR----GFTFVGIAVN---EQL   79 (165)
T ss_dssp             CCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHH-HHHHHHHHHHHHHHHTTT----TEEEEEEECS---CCH
T ss_pred             hcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhccC----CeEEEEEECC---CCH
Confidence            34566679999999999999999999999999999999998 999999999999999865    7999999998   578


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhc
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAY  167 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (183)
                      +.+++|+++++.+|+.+.++.+    +.+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~  106 (165)
T 3or5_A           80 PNVKNYMKTQGIIYPVMMATPE----LIRAF  106 (165)
T ss_dssp             HHHHHHHHHHTCCSCEEECCHH----HHHHH
T ss_pred             HHHHHHHHHcCCCCceEecCHH----HHHHH
Confidence            9999999999999999988753    45555

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.82  E-value=1.2e-20  Score=139.12  Aligned_cols=101  Identities=9%  Similarity=0.120  Sum_probs=87.1

Q ss_pred             ccCCCeEEEcC----CC-----CeeecCcc-CCC-EEEEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCee-EEEE
Q psy17592         61 AIGGKFELVDC----NN-----KPVKSEDF-LGK-WALIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNIT-PIFI  127 (183)
Q Consensus        61 ~~~p~f~l~d~----~G-----~~v~l~~~-~gk-~vll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~-~v~I  127 (183)
                      ..+|+|++++.    +|     +.++++++ +|| ++|++||++|||+ |..| +|.|++++++++++    +++ +++|
T Consensus        11 ~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~-C~~eh~p~l~~~~~~~~~~----g~~~vv~I   85 (171)
T 2pwj_A           11 SAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGV-CSSKHVPPYKHNIDKFKAK----GVDSVICV   85 (171)
T ss_dssp             CCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTT-HHHHTHHHHHHTHHHHHHT----TCSEEEEE
T ss_pred             CcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCC-CCHHHHHHHHHHHHHHHHC----CCCEEEEE
Confidence            35699999998    57     89999996 996 6778999999998 9999 99999999999865    789 9999


Q ss_pred             EeCCCCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        128 SVDPERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       128 s~dp~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      |.|    +++.+++|+++++.  +|+.+.+....   ++++||+....
T Consensus        86 s~d----~~~~~~~~~~~~~~~~~fp~l~D~~~~---~~~~ygv~~~~  126 (171)
T 2pwj_A           86 AIN----DPYTVNAWAEKIQAKDAIEFYGDFDGS---FHKSLELTTDL  126 (171)
T ss_dssp             ESS----CHHHHHHHHHHTTCTTTSEEEECTTCH---HHHHHTCEEEC
T ss_pred             eCC----CHHHHHHHHHHhCCCCceEEEECCccH---HHHHhCCcccc
Confidence            987    57889999999995  79998886544   88999998654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.82  E-value=2.6e-20  Score=139.33  Aligned_cols=100  Identities=21%  Similarity=0.298  Sum_probs=89.2

Q ss_pred             cccCCCeEEEcC--CC--CeeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         60 VAIGGKFELVDC--NN--KPVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        60 ~~~~p~f~l~d~--~G--~~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      +..+|+|++++.  +|  +.++++++ +||++||+|| ++|||+ |+.++|.|++++++++++    ++++|+|++|   
T Consensus         3 G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~----~v~vv~Is~d---   74 (192)
T 2h01_A            3 QGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFV-CPSEIIALDKALDSFKER----NVELLGCSVD---   74 (192)
T ss_dssp             SSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSS-CCHHHHHHHHTHHHHHHT----TEEEEEEESS---
T ss_pred             CCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEEeC---
Confidence            445699999999  99  99999999 9999999999 999997 999999999999999765    7999999987   


Q ss_pred             CcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        134 DTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       134 d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                       +++.+++|++++       +.+|+.+.+...   ++++.||+.+
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~gv~~  115 (192)
T 2h01_A           75 -SKFTHLAWKKTPLSQGGIGNIKHTLISDISK---SIARSYDVLF  115 (192)
T ss_dssp             -CHHHHHHHHTSCGGGTCCCSCSSEEEECTTS---HHHHHTTCEE
T ss_pred             -CHHHHHHHHHhHHhhCCccCCCcCeEECCcH---HHHHHhCCcC
Confidence             678999999988       788999987543   4889999985

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=6.6e-22  Score=143.26  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=89.5

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHH-HHHHhh-CCCCCCCeeEEEEEeCCCCC
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAA-VVNKID-GQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~-l~~~~~-~~~~~~~v~~v~Is~dp~~d  134 (183)
                      +..+..+|+|+++|.+|+.+++++++||++||+||++|||+ |+.++|.|.+ +++++. ..    ++.+++|++|   +
T Consensus         7 l~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~-C~~~~~~l~~~l~~~~~~~~----~~~vv~v~~d---~   78 (159)
T 2ls5_A            7 VRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV-CRKEMPFIEKDIWLKHKDNA----DFALIGIDRD---E   78 (159)
Confidence            34455669999999999999999999999999999999998 9999999998 988876 33    7999999998   4


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      +++.+++|.++++.+|+.+.+...   .+++.||+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~  112 (159)
T 2ls5_A           79 PLEKVLAFAKSTGVTYPLGLDPGA---DIFAKYALRD  112 (159)
Confidence            567889999999999999887554   4788888654

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.82  E-value=3.2e-20  Score=140.09  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=90.4

Q ss_pred             CCCcccCCCeEEEcC--CC--CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         57 LGKVAIGGKFELVDC--NN--KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~--~G--~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +..+..+|+|++++.  +|  +.+++++++||++||+|| ++|||+ |+.+++.|+++++++++.    ++++|+|++| 
T Consensus         6 ~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~-C~~~~~~l~~l~~~~~~~----~v~vi~Is~D-   79 (202)
T 1uul_A            6 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFV-CPTEICQFSDRVKEFSDI----GCEVLACSMD-   79 (202)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSH-HHHHHHHHHHTHHHHHTT----TEEEEEEESS-
T ss_pred             ccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEeCC-
Confidence            345666799999998  78  899999999999999999 999997 999999999999999865    7999999987 


Q ss_pred             CCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        132 ERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                         +++.+++|++++       +.+|+.+.+...   ++++.||+..
T Consensus        80 ---~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~---~~~~~ygv~~  120 (202)
T 1uul_A           80 ---SEYSHLAWTSIERKRGGLGQMNIPILADKTK---CIMKSYGVLK  120 (202)
T ss_dssp             ---CHHHHHHHHHSCGGGTCCCSCSSCEEECTTC---HHHHHHTCEE
T ss_pred             ---CHHHHHHHHHHHHhhCCCCCCceeEEECCch---HHHHHcCCcc
Confidence               578899999998       789999887543   4888999874

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.82  E-value=2.8e-20  Score=139.83  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=89.4

Q ss_pred             CcccCCCeEEEcC--CCC---eeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         59 KVAIGGKFELVDC--NNK---PVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        59 ~~~~~p~f~l~d~--~G~---~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+..+|+|+++|.  +|+   .++++++ +||++||+|| ++|||+ |+.++|.|++++++++++    ++++++|++| 
T Consensus         3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~l~~~~~~~----~v~vv~Is~d-   76 (198)
T 1zof_A            3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFV-CPTEIIAFDKRVKDFHEK----GFNVIGVSID-   76 (198)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSS-CCTHHHHHHHTHHHHHHT----TEEEEEEESS-
T ss_pred             CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHc----CCEEEEEECC-
Confidence            3456699999999  898   9999999 9999999999 999997 999999999999999865    7999999988 


Q ss_pred             CCCcHHHHHHHHHH-------hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        132 ERDTPELVGKYVKE-------FSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       132 ~~d~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                         +++.+++|+++       ++.+|+.+.+...   ++++.||+.+
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~~  117 (198)
T 1zof_A           77 ---SEQVHFAWKNTPVEKGGIGQVSFPMVADITK---SISRDYDVLF  117 (198)
T ss_dssp             ---CHHHHHHHHTSCGGGTCCCCCSSCEEECTTS---HHHHHTTCEE
T ss_pred             ---CHHHHHHHHHhhhhcccccCceeEEEECCch---HHHHHhCCcc
Confidence               47899999998       7889999887543   4889999874

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.82  E-value=2.6e-20  Score=144.12  Aligned_cols=104  Identities=9%  Similarity=0.123  Sum_probs=91.0

Q ss_pred             CCcccCCCeEEEcC-CCC--eeecCc-cCCCEEEEEEE-cCCCCCCcH-HHHHHHHHHHHHhhCCCCCCCe-eEEEEEeC
Q psy17592         58 GKVAIGGKFELVDC-NNK--PVKSED-FLGKWALIYFG-FTHCPDICP-DELEKMAAVVNKIDGQPNVPNI-TPIFISVD  130 (183)
Q Consensus        58 ~~~~~~p~f~l~d~-~G~--~v~l~~-~~gk~vll~f~-~t~C~~~C~-~~~~~l~~l~~~~~~~~~~~~v-~~v~Is~d  130 (183)
                      ..+..+|+|++++. +|+  .+++++ ++||++||+|| ++|||+ |+ .|+|.|++++++++++    ++ ++++||.|
T Consensus         4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~-C~~~e~~~l~~~~~~~~~~----~~~~vv~is~d   78 (241)
T 1nm3_A            4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPT-CSSSHLPRYNELAPVFKKY----GVDDILVVSVN   78 (241)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHH-HHHTHHHHHHHHHHHHHHT----TCCEEEEEESS
T ss_pred             cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHC----CCCEEEEEEcC
Confidence            34566799999996 787  899999 89999999999 999997 99 9999999999999865    79 99999987


Q ss_pred             CCCCcHHHHHHHHHHhCCC-eEEecCCHHHHHHHHhhcCeeEee
Q psy17592        131 PERDTPELVGKYVKEFSPK-FIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       131 p~~d~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                          +++.+++|+++++.+ |+.+.+....   ++++||+....
T Consensus        79 ----~~~~~~~~~~~~~~~~~~~l~D~~~~---~~~~~gv~~~~  115 (241)
T 1nm3_A           79 ----DTFVMNAWKEDEKSENISFIPDGNGE---FTEGMGMLVGK  115 (241)
T ss_dssp             ----CHHHHHHHHHHTTCTTSEEEECTTSH---HHHHTTCEEEC
T ss_pred             ----CHHHHHHHHHhcCCCceEEEECCCcH---HHHHhCceeec
Confidence                578999999999986 9999886544   89999998653

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.71  E-value=9.1e-22  Score=139.65  Aligned_cols=104  Identities=17%  Similarity=0.242  Sum_probs=90.5

Q ss_pred             CCCeEEEcCCCCeeecCc-cCCC-EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSED-FLGK-WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~-~~gk-~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      .|+|+++|.+|+.+++++ ++|| ++||+||++|||+ |+.++|.|+++++++++.  .+++.+++|++|   ++++.++
T Consensus         4 ~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~-C~~~~~~l~~~~~~~~~~--~~~~~v~~v~~d---~~~~~~~   77 (143)
T 2lus_A            4 IQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP-CRGFTPILADMYSELVDD--SAPFEIIFVSSD---RSEDDMF   77 (143)
Confidence            489999999999999999 9999 9999999999998 999999999999998543  347999999998   5678899


Q ss_pred             HHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      +|+++++.+|+.+....+....+++.||+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  109 (143)
T 2lus_A           78 QYMMESHGDWLAIPYRSGPASNVTAKYGITGI  109 (143)
Confidence            99999999998876665556678899987543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.81  E-value=1.5e-20  Score=147.13  Aligned_cols=106  Identities=19%  Similarity=0.238  Sum_probs=90.9

Q ss_pred             hcCCCcccCCCeEEE---cCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         55 RNLGKVAIGGKFELV---DCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~---d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..+..+..+|+|+++   |.+|+.++|++++||++||+|| ++|||+ |+.++|.|++++++++++    +++||+|++|
T Consensus        60 ~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~-C~~el~~l~~l~~~~~~~----gv~vv~IS~D  134 (254)
T 3tjj_A           60 SKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFV-CPTEIIAFGDRLEEFRSI----NTEVVACSVD  134 (254)
T ss_dssp             CCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSS-CCHHHHHHHHTHHHHHTT----TEEEEEEESS
T ss_pred             cccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHc----CCEEEEEcCC
Confidence            344566777999977   4567899999999999999999 999997 999999999999999876    8999999987


Q ss_pred             CCCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        131 PERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       131 p~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                          +++.+++|++++       +.+|+.+.+...   ++++.||+..+
T Consensus       135 ----~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~---~va~~ygv~~~  176 (254)
T 3tjj_A          135 ----SQFTHLAWINTPRRQGGLGPIRIPLLSDLTH---QISKDYGVYLE  176 (254)
T ss_dssp             ----CHHHHHHHHTSCGGGTSCCSCSSCEEECTTS---HHHHHHTCEET
T ss_pred             ----CHHHHHHHHHHHHHhcCCcccccceeeCcHH---HHHHHcCCccc
Confidence                678888999886       789999987653   58999999753

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.81  E-value=1.4e-19  Score=129.72  Aligned_cols=103  Identities=24%  Similarity=0.255  Sum_probs=88.0

Q ss_pred             CCcccCC-CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         58 GKVAIGG-KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        58 ~~~~~~p-~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      ..+..+| +|+++|.+|+.+++++++||++||+||++|||+ |+.+++.|+++++++.++    ++.+++|++|   +..
T Consensus         4 ~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~l~~~~~~~----~~~~v~v~~d---~~~   75 (152)
T 2lja_A            4 RSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGP-CRGELPALKELEEKYAGK----DIHFVSLSCD---KNK   75 (152)
T ss_dssp             TTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCG-GGGTHHHHHHHHHHSTTS----SEEEEEEECC---SCH
T ss_pred             ccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHh-HHHHhHHHHHHHHHhccC----CeEEEEEEcc---CcH
Confidence            4455678 999999999999999999999999999999998 999999999999998754    7999999999   456


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+++|+++++.+|..+..+.  ...+++.||+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~  107 (152)
T 2lja_A           76 KAWENMVTKDQLKGIQLHMGT--DRTFMDAYLIN  107 (152)
T ss_dssp             HHHHHHHHHHTCCSEEEECSS--CTHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCCceeecCc--chhHHHHcCcC
Confidence            889999999998876655442  23478888865

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.81  E-value=7.4e-20  Score=135.22  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=85.8

Q ss_pred             cCCCcccCCCeEEEcCCC--CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNN--KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G--~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      .+..+..+|+|+++|.+|  +.+++++++||++||+||++|||+ |..++|.|++++++        ++.+++|++|   
T Consensus        29 ~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~--------~v~vv~vs~~---   96 (176)
T 3kh7_A           29 SALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPS-CRVEHPELTRLAEQ--------GVVIYGINYK---   96 (176)
T ss_dssp             TTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHH-HHHHHHHHHHHHHT--------TCEEEEEEES---
T ss_pred             ccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHH-HHHHHHHHHHHHHC--------CCEEEEEeCC---
Confidence            344566679999999999  899999999999999999999998 99999999999874        5999999998   


Q ss_pred             CcHHHHHHHHHHhCCCeEE-ecCCHHHHHHHHhhcCee
Q psy17592        134 DTPELVGKYVKEFSPKFIG-LTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~  170 (183)
                      |+++.+++|+++++.+|+. +.+...   .+++.||+.
T Consensus        97 d~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~  131 (176)
T 3kh7_A           97 DDNAAAIKWLNELHNPYLLSISDADG---TLGLDLGVY  131 (176)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEEEETTC---HHHHHHTCC
T ss_pred             CCHHHHHHHHHHcCCCCceEEECCcc---hHHHHcCCC
Confidence            7899999999999999875 333333   478888875

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.81  E-value=1.3e-19  Score=129.01  Aligned_cols=101  Identities=13%  Similarity=0.148  Sum_probs=84.6

Q ss_pred             ccCCC-eEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         61 AIGGK-FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        61 ~~~p~-f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      ..+|+ |+++|.+|+.+++++++||++||+||++|||+ |+.++|.|++++++++++   .++++++|++|   ++.+.+
T Consensus         5 ~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~---~~~~vv~v~~d---~~~~~~   77 (144)
T 1i5g_A            5 KFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEK---KNFEVMLISWD---ESAEDF   77 (144)
T ss_dssp             TSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---SSHHHH
T ss_pred             hhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhccC---CCEEEEEEeCC---CCHHHH
Confidence            34588 99999999999999999999999999999997 999999999999999752   27999999999   578999


Q ss_pred             HHHHHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        140 GKYVKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       140 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++|+++++. .++.+  ..+....+++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~--~~d~~~~~~~~~~v~  107 (144)
T 1i5g_A           78 KDYYAKMPWLALPFE--DRKGMEFLTTGFDVK  107 (144)
T ss_dssp             HHHHTTCSSEECCTT--CHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCccccccC--chHHHHHHHHHcCCC
Confidence            999998752 33322  224456789999875

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.81  E-value=4.9e-20  Score=132.42  Aligned_cols=104  Identities=24%  Similarity=0.330  Sum_probs=92.0

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +..+..+|+|+++|.+|+.+++++++ |++||+||++||++ |..+++.|.++++++       ++.+++|++|+ .+++
T Consensus         5 l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~-C~~~~~~l~~l~~~~-------~v~~v~v~~d~-~~~~   74 (154)
T 3ia1_A            5 VKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTV-CKAEFPGLHRVAEET-------GVPFYVISREP-RDTR   74 (154)
T ss_dssp             CCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHH-HHHHHHHHHHHHHHH-------CCCEEEEECCT-TCCH
T ss_pred             CCCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChh-HHHHHHHHHHHHHHc-------CCeEEEEeCCC-cccH
Confidence            45667779999999999999999999 99999999999997 999999999999987       48999999973 4789


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +.+++|+++++.+|+.+.++.+....+++.||+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           75 EVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             HHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             HHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            9999999999999999988433445689999975

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.81  E-value=1.5e-19  Score=126.74  Aligned_cols=96  Identities=19%  Similarity=0.284  Sum_probs=86.4

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .+|+|+++|.+|+.+++++++||+++|+||++||++ |..+++.|+++++++.      ++.++.|+.|   ++++.+++
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~------~~~~~~v~~~---~~~~~~~~   72 (136)
T 1lu4_A            3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPF-CNAEAPSLSQVAAANP------AVTFVGIATR---ADVGAMQS   72 (136)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEECS---SCHHHHHH
T ss_pred             CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChh-HHHHHHHHHHHHHHCC------CcEEEEEEcC---CCHHHHHH
Confidence            349999999999999999999999999999999998 9999999999999874      6999999998   57899999


Q ss_pred             HHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        142 YVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      |+++++.+|+.+.+....   +++.||+.
T Consensus        73 ~~~~~~~~~~~~~d~~~~---~~~~~~i~   98 (136)
T 1lu4_A           73 FVSKYNLNFTNLNDADGV---IWARYNVP   98 (136)
T ss_dssp             HHHHHTCCSEEEECTTSH---HHHHTTCC
T ss_pred             HHHHcCCCceEEECCchh---HHHhcCCC
Confidence            999999999999875544   77788864

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.80  E-value=1.4e-19  Score=138.53  Aligned_cols=104  Identities=16%  Similarity=0.230  Sum_probs=89.6

Q ss_pred             cCCCcccCCCeEEEc---CCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         56 NLGKVAIGGKFELVD---CNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d---~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+..+..+|+|++++   .+|+.+++++++||++||+|| ++|||+ |+.+++.|++++++++++    +++||+|++| 
T Consensus        26 ~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~-C~~~~~~l~~l~~~~~~~----~v~vv~Is~D-   99 (220)
T 1zye_A           26 APAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFV-CPTEIIAFSDKASEFHDV----NCEVVAVSVD-   99 (220)
T ss_dssp             -CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSS-SHHHHHHHHHHHHHHHHT----TEEEEEEESS-
T ss_pred             cccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEECC-
Confidence            345566779999985   578999999999999999999 999997 999999999999999865    7999999998 


Q ss_pred             CCCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        132 ERDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                         +.+.+++|++++       +.+|+.+.+...   ++++.||+.+
T Consensus       100 ---~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~---~i~~~ygv~~  140 (220)
T 1zye_A          100 ---SHFSHLAWINTPRKNGGLGHMNIALLSDLTK---QISRDYGVLL  140 (220)
T ss_dssp             ---CHHHHHHHHTSCGGGTCCCSCSSEEEECTTS---HHHHHTTCEE
T ss_pred             ---CHHHHHHHHHHHHHhCCCcCCceEEEECCcH---HHHHHhCCee
Confidence               467888999887       789999988643   4889999874

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.80  E-value=2.3e-19  Score=125.51  Aligned_cols=97  Identities=20%  Similarity=0.307  Sum_probs=86.6

Q ss_pred             ccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        61 ~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      ..+|+|++++.+|+.+++++++||+++|+||++||++ |..+++.|.++++++.      ++.++.|+.|   ++.+.++
T Consensus         3 ~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~------~~~~~~v~~~---~~~~~~~   72 (136)
T 1zzo_A            3 PAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPT-CQGEAPVVGQVAASHP------EVTFVGVAGL---DQVPAMQ   72 (136)
T ss_dssp             CGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEECS---SCHHHHH
T ss_pred             CCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChh-HHHHHHHHHHHHHHcC------CeEEEEEeCC---CCHHHHH
Confidence            3459999999999999999999999999999999998 9999999999999874      6999999998   6789999


Q ss_pred             HHHHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        141 KYVKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       141 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +|+++++. +|+.+.+....   +++.||+.
T Consensus        73 ~~~~~~~~~~~~~~~d~~~~---~~~~~~i~  100 (136)
T 1zzo_A           73 EFVNKYPVKTFTQLADTDGS---VWANFGVT  100 (136)
T ss_dssp             HHHHHTTCTTSEEEECTTCH---HHHHTTCC
T ss_pred             HHHHHcCCCceEEEEcCCcH---HHHHcCCC
Confidence            99999999 99998875444   77888864

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.80  E-value=8e-20  Score=139.99  Aligned_cols=102  Identities=20%  Similarity=0.129  Sum_probs=87.6

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcH-----HHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICP-----DELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~-----~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      .+..+..+|+|+|+|.+|+.++|++++||++||+||++| ||+ |.     .+++.++++   +  .    ++.||+||.
T Consensus        21 ~l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~-C~~~~~~~El~~~~~~---~--~----gv~VvgIS~   90 (224)
T 3keb_A           21 FPRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDE-HAGLLLLRETRRFLDS---W--P----HLKLIVITV   90 (224)
T ss_dssp             CCCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCST-TTSHHHHHHHHHHHTT---C--T----TSEEEEEES
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCC-CCCCccHHHHHHHHHH---c--C----CCEEEEEEC
Confidence            345566779999999999999999999999999999999 886 99     999988887   3  2    799999998


Q ss_pred             CCCCCcHHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        130 DPERDTPELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      |    +++.+++|+++++. +|+.+.+..  ...++++||+....
T Consensus        91 D----s~~~~~~f~~~~gl~~fplLsD~~--~~~vak~yGv~~~~  129 (224)
T 3keb_A           91 D----SPSSLARARHEHGLPNIALLSTLR--GRDFHKRYGVLITE  129 (224)
T ss_dssp             S----CHHHHHHHHHHHCCTTCEEEESTT--CTTHHHHTTCBCCS
T ss_pred             C----CHHHHHHHHHHcCCCCceEEEcCC--chHHHHHhCCcccc
Confidence            7    78999999999998 799998852  13489999998754

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.79  E-value=2.5e-19  Score=127.90  Aligned_cols=100  Identities=17%  Similarity=0.227  Sum_probs=83.3

Q ss_pred             ccCCC-eEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         61 AIGGK-FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        61 ~~~p~-f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      ..+|+ |+++|.+| .+++++++||++||+||++||++ |+.++|.|++++++++++   +++.+++|++|   ++.+.+
T Consensus         6 ~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~---~~~~vv~v~~d---~~~~~~   77 (146)
T 1o8x_A            6 KYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHES---KNFEVVFCTWD---EEEDGF   77 (146)
T ss_dssp             GTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---CSHHHH
T ss_pred             hhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHH-HHHHHHHHHHHHHHhhhc---CCeEEEEEeCC---CCHHHH
Confidence            34588 99999999 99999999999999999999997 999999999999999742   27999999999   578899


Q ss_pred             HHHHHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        140 GKYVKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       140 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++|+++++. .++.+  ..+....+++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~--~~d~~~~~~~~~~v~  107 (146)
T 1o8x_A           78 AGYFAKMPWLAVPFA--QSEAVQKLSKHFNVE  107 (146)
T ss_dssp             HHHHTTCSSEECCGG--GHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCceeeccc--hhhHHHHHHHHhCCC
Confidence            999998762 33333  223456789999874

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.79  E-value=8.6e-20  Score=132.11  Aligned_cols=101  Identities=19%  Similarity=0.295  Sum_probs=88.3

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .+..+..+|+|+++|.+|+.+++++++||++||+||++||++ |..+++.|.++++++.+.    ++.+++|+.|+    
T Consensus        14 ~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~-C~~~~~~l~~~~~~~~~~----~~~~v~v~~d~----   84 (158)
T 3hdc_A           14 LVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPY-CRDEMPSMDRLVKSFPKG----DLVVLAVNVEK----   84 (158)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHSSTT----SEEEEEEECSS----
T ss_pred             ccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHcccC----CeEEEEEeCCH----
Confidence            345566779999999999999999999999999999999997 999999999999999755    79999999984    


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                        .+++|.++++.+|+.+.+....   +++.||+.
T Consensus        85 --~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  114 (158)
T 3hdc_A           85 --RFPEKYRRAPVSFNFLSDATGQ---VQQRYGAN  114 (158)
T ss_dssp             --SCCGGGGGCCCSCEEEECTTSH---HHHHTTCC
T ss_pred             --HHHHHHHHcCCCceEEECchHH---HHHHhCCC
Confidence              4677888999999999876544   78888875

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.79  E-value=1.1e-19  Score=140.47  Aligned_cols=103  Identities=13%  Similarity=0.168  Sum_probs=88.7

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCC-EEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGK-WALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      ..+..+|+|++++.+| .+++++++|| |+||+|| ++|||. |+.|++.|++++++++++    ++++|+||+|    +
T Consensus         4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpv-C~~el~~l~~l~~ef~~~----~v~vigIS~D----~   73 (233)
T 2v2g_A            4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPV-STTELGRVIQLEGDFKKR----GVKLIALSCD----N   73 (233)
T ss_dssp             CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHH-HHHHHHHHHHTHHHHHHT----TEEEEEEESS----C
T ss_pred             CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCC-cHHHHHHHHHHHHHHHHc----CCEEEEEcCC----C
Confidence            3456679999999999 8999999998 9999998 999996 999999999999999865    8999999998    4


Q ss_pred             HHHHHHHHH------Hh--CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        136 PELVGKYVK------EF--SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       136 ~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      .+.+++|++      ++  +.+|+.+.+...   ++++.||+....
T Consensus        74 ~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~---~va~~ygv~~~~  116 (233)
T 2v2g_A           74 VADHKEWSEDVKCLSGVKGDMPYPIIADETR---ELAVKLGMVDPD  116 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSCSSCEEECTTC---HHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHhhCcccCCceEEEECChH---HHHHHhCCcCcc
Confidence            677888888      56  788999887544   489999998653

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.79  E-value=1.5e-19  Score=128.41  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=89.1

Q ss_pred             CcccCCCeEE--EcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC--
Q psy17592         59 KVAIGGKFEL--VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD--  134 (183)
Q Consensus        59 ~~~~~p~f~l--~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d--  134 (183)
                      .+..+|+|++  ++.+|+.+++++++||++||+||++|||+ |..++|.|+++++++.+     ++.++.|++|+..+  
T Consensus         3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~l~~~~~~-----~~~~~~v~~~~~~~~~   76 (148)
T 2b5x_A            3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHL-CKEAMPQVNEFRDKYQD-----QLNVVAVHMPRSEDDL   76 (148)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TSEEEEEECCCSTTTS
T ss_pred             CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHH-HHHHhHHHHHHHHHhcC-----CcEEEEEEcCCCcccc
Confidence            3456699998  78999999999999999999999999998 99999999999999863     39999999986433  


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++.+++|+++++.+|+.+.+....   +++.||+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  109 (148)
T 2b5x_A           77 DPGKIKETAAEHDITQPIFVDSDHA---LTDAFENE  109 (148)
T ss_dssp             SHHHHHHHHHHTTCCSCEEECSSCH---HHHHTCCC
T ss_pred             CHHHHHHHHHHcCCCcceEECCchh---HHHHhCCC
Confidence            8999999999999999988775444   78888875

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.79  E-value=1.6e-19  Score=132.14  Aligned_cols=99  Identities=20%  Similarity=0.323  Sum_probs=82.9

Q ss_pred             cCCCe-EEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         62 IGGKF-ELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        62 ~~p~f-~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      .+|+| +++|.+| .+++++++||++||+||++||++ |+.++|.|++++++++++   .++.||+|++|   ++.+.++
T Consensus        27 ~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~---~~v~vv~v~~d---~~~~~~~   98 (165)
T 3s9f_A           27 HLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPP-CRGFTPQLVEFYEKHHDS---KNFEIILASWD---EEEDDFN   98 (165)
T ss_dssp             HHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---CSHHHHH
T ss_pred             cCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChh-HHHHHHHHHHHHHHhccC---CCeEEEEEecC---CCHHHHH
Confidence            34888 9999999 99999999999999999999998 999999999999999863   27999999999   6788999


Q ss_pred             HHHHHhCCCeEEecC-CHHHHHHHHhhcCee
Q psy17592        141 KYVKEFSPKFIGLTG-TVEQVAAACKAYRVY  170 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~gv~  170 (183)
                      +|+++++  |..+.. .......+++.||+.
T Consensus        99 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~  127 (165)
T 3s9f_A           99 AYYAKMP--WLSIPFANRNIVEALTKKYSVE  127 (165)
T ss_dssp             HHHTTCS--SEECCTTCHHHHHHHHHHTTCC
T ss_pred             HHHHhCC--CcccccCchhHHHHHHHHcCCC
Confidence            9999874  333222 333446799999974

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.79  E-value=4.6e-19  Score=123.88  Aligned_cols=99  Identities=15%  Similarity=0.235  Sum_probs=85.7

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC--CCCcHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP--ERDTPELVG  140 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp--~~d~~~~~~  140 (183)
                      +|+|+++|.+|+.+++++++||++||+||++||++ |..+++.|.++++++.     +++.++.|..+.  ..++.+.++
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~v~i~~~~~~~~~~~~~~~   75 (138)
T 4evm_A            2 VADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSI-CLASLPDTDEIAKEAG-----DDYVVLTVVSPGHKGEQSEADFK   75 (138)
T ss_dssp             CCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHH-HHHHHHHHHHHHHTCT-----TTEEEEEEECTTSTTCCCHHHHH
T ss_pred             CCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhC-----CCcEEEEEEcCCCCchhhHHHHH
Confidence            49999999999999999999999999999999998 9999999999999843     379999995432  347899999


Q ss_pred             HHHHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592        141 KYVKEFSP-KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       141 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +|.++++. +|+.+.+....   +++.||+.
T Consensus        76 ~~~~~~~~~~~~~~~d~~~~---~~~~~~v~  103 (138)
T 4evm_A           76 NWYKGLDYKNLPVLVDPSGK---LLETYGVR  103 (138)
T ss_dssp             HHHTTCCCTTCCEEECTTCH---HHHHTTCC
T ss_pred             HHHhhcCCCCeeEEECcchH---HHHHcCcc
Confidence            99999998 89988876544   78888864

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.78  E-value=1.7e-19  Score=147.08  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=94.4

Q ss_pred             CCCcccCCCeE-----EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         57 LGKVAIGGKFE-----LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        57 ~~~~~~~p~f~-----l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +..+..+|+|+     +.|.+|+.+++++++||++||+||++||++ |+.++|.|++++++++++    ++.||+|++|.
T Consensus        51 l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~-C~~~~p~L~~l~~~~~~~----~v~vi~Vs~d~  125 (352)
T 2hyx_A           51 LESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCIN-CQRAIPHVVGWYQAYKDS----GLAVIGVHTPE  125 (352)
T ss_dssp             CCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG----TEEEEEEECCS
T ss_pred             cCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHhhcC----CeEEEEEECCc
Confidence            44566679999     999999999999999999999999999998 999999999999999865    79999999874


Q ss_pred             --CCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        132 --ERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       132 --~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                        ..++++.+++|+++++.+|+.+.+....   +++.|++..-
T Consensus       126 ~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~---l~~~ygV~~~  165 (352)
T 2hyx_A          126 YAFEKVPGNVAKGAANLGISYPIALDNNYA---TWTNYRNRYW  165 (352)
T ss_dssp             SGGGGCHHHHHHHHHHHTCCSCEEECTTSH---HHHHTTCCEE
T ss_pred             ccccCCHHHHHHHHHHcCCCccEEeCCcHH---HHHHcCCCcc
Confidence              2468999999999999999998876543   7888987643

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.78  E-value=2.9e-19  Score=137.27  Aligned_cols=102  Identities=20%  Similarity=0.236  Sum_probs=86.5

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCC-E-EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGK-W-ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk-~-vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      ..+..+|+|++.+.+| .+++++++|| | +|++||++|||. |..|++.|++++++++++    ++++|+||+|    +
T Consensus         6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~-C~~el~~l~~l~~~f~~~----~v~vi~IS~D----~   75 (224)
T 1prx_A            6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPV-CTTELGRAAKLAPEFAKR----NVKLIALSID----S   75 (224)
T ss_dssp             CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHH-HHHHHHHHHHHHHHHHTT----TEEEEEEESS----C
T ss_pred             CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCC-cHHHHHHHHHHHHHHHHC----CCEEEEEcCC----C
Confidence            4456679999999999 9999999997 5 566679999996 999999999999999876    8999999998    4


Q ss_pred             HHHHHHHHHH----------hCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKE----------FSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      .+.+++|.++          ++.+|+.+.+...   ++++.||+...
T Consensus        76 ~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~---~va~~ygv~~~  119 (224)
T 1prx_A           76 VEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNR---ELAILLGMLDP  119 (224)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTC---HHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHhhCcccccCcCcceeecCch---HHHHHhCCCCc
Confidence            5677788876          7889999887544   48899998754

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.77  E-value=8e-19  Score=124.68  Aligned_cols=100  Identities=20%  Similarity=0.287  Sum_probs=82.5

Q ss_pred             ccCCCe-EEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         61 AIGGKF-ELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        61 ~~~p~f-~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      ..+|+| +++|.+| .+++++++||++||+||++||++ |+.++|.|++++++++++   .++.+++|++|   ++.+.+
T Consensus         6 ~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~---~~~~vv~i~~d---~~~~~~   77 (144)
T 1o73_A            6 KYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHVA---KNFEVVLISWD---ENESDF   77 (144)
T ss_dssp             GTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---SSHHHH
T ss_pred             hhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHH-HHHHHHHHHHHHHHhccC---CCEEEEEEeCC---CCHHHH
Confidence            445997 9999999 99999999999999999999998 999999999999998742   27999999999   567889


Q ss_pred             HHHHHHhCCCeEEecC-CHHHHHHHHhhcCee
Q psy17592        140 GKYVKEFSPKFIGLTG-TVEQVAAACKAYRVY  170 (183)
Q Consensus       140 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~gv~  170 (183)
                      ++|+++++  |..+.. ..+....+++.||+.
T Consensus        78 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~  107 (144)
T 1o73_A           78 HDYYGKMP--WLALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             HHHHTTCS--SEECCTTCHHHHHHHHHHHTCC
T ss_pred             HHHHHhCC--ceEeeccchhHHHHHHHHcCCC
Confidence            99999875  333222 234456788999874

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.77  E-value=3.8e-19  Score=136.25  Aligned_cols=103  Identities=14%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             CCcccCCCeEEEcC--CCCeeecCccCCC-EE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         58 GKVAIGGKFELVDC--NNKPVKSEDFLGK-WA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        58 ~~~~~~p~f~l~d~--~G~~v~l~~~~gk-~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      ..+..+|+|++.+.  +| .+++++++|| |+ |++||++|||. |..|++.|++++++++++    ++++|+||+|   
T Consensus         4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~-C~~el~~l~~l~~~f~~~----~v~vi~vS~D---   74 (220)
T 1xcc_A            4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPV-CTTELAELGKMHEDFLKL----NCKLIGFSCN---   74 (220)
T ss_dssp             CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHH-HHHHHHHHHHTHHHHHTT----TEEEEEEESS---
T ss_pred             CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHc----CCEEEEEeCC---
Confidence            34566799999999  99 8999999998 65 55569999996 999999999999999876    8999999998   


Q ss_pred             CcHHHHHHHHH-------HhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        134 DTPELVGKYVK-------EFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       134 d~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                       +.+.+++|.+       +++.+|+.+.+...   ++++.||+....
T Consensus        75 -~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~---~va~~ygv~~~~  117 (220)
T 1xcc_A           75 -SKESHDKWIEDIKYYGKLNKWEIPIVCDESR---ELANKLKIMDEQ  117 (220)
T ss_dssp             -CHHHHHHHHHHHHHHHTCSCCCCCEEECTTS---HHHHHHTCEEEE
T ss_pred             -CHHHHHHHHHHHHHHhcCCCCcceeEECchh---HHHHHhCCCCcc
Confidence             4566677776       46789999887544   488999997654

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.77  E-value=1.1e-18  Score=127.20  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=84.5

Q ss_pred             hcCCCcccCCCeEEEcC--CCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         55 RNLGKVAIGGKFELVDC--NNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~d~--~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ..+..+..+|+|+++|.  +|+.++++++ +||++||+||++|||+ |+.++|.|++++++        ++.+++|++| 
T Consensus        20 ~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~--------~v~vv~v~~~-   89 (168)
T 2b1k_A           20 ESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSAQ--------GIRVVGMNYK-   89 (168)
T ss_dssp             CCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHH-HHHHHHHHHHHHHT--------TCCEEEEEES-
T ss_pred             cccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHC--------CCEEEEEECC-
Confidence            34455667799999999  9999999885 8999999999999998 99999999999874        5899999998 


Q ss_pred             CCCcHHHHHHHHHHhCCCeEE-ecCCHHHHHHHHhhcCee
Q psy17592        132 ERDTPELVGKYVKEFSPKFIG-LTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~  170 (183)
                        ++++.+++|+++++.+|+. +.+..   ..+++.||+.
T Consensus        90 --~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~v~  124 (168)
T 2b1k_A           90 --DDRQKAISWLKELGNPYALSLFDGD---GMLGLDLGVY  124 (168)
T ss_dssp             --CCHHHHHHHHHHHCCCCSEEEEETT---CHHHHHHTCC
T ss_pred             --CChHHHHHHHHHcCCCCceeeECcc---hHHHHHcCcc
Confidence              5789999999999999874 33332   3478888875

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.76  E-value=4e-19  Score=135.26  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=89.8

Q ss_pred             CCCcccCCCeEEE---cCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         57 LGKVAIGGKFELV---DCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        57 ~~~~~~~p~f~l~---d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      +..+.++|+|+++   |.+|+.++|+|++|||+||+|| +.|||. |..|++.+++.+.++++.    ++++++||.|  
T Consensus        23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~Tpv-Ct~E~~~f~~~~~~f~~~----g~~vigiS~D--   95 (216)
T 3sbc_A           23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFV-SPTEIIAFSEAAKKFEEQ----GAQVLFASTD--   95 (216)
T ss_dssp             CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHHHHHHHHT----TEEEEEEESS--
T ss_pred             hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCc-CchhhhHHHHhHHhhccC----CceEEEeecC--
Confidence            3456667999976   6677899999999999999999 899996 999999999999999876    8999999998  


Q ss_pred             CCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        133 RDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       133 ~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                        ++...++|.+..       +.+|+.+.+....   ++++||+..+.
T Consensus        96 --s~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~---vak~YGv~~~~  138 (216)
T 3sbc_A           96 --SEYSLLAWTNIPRKEGGLGPINIPLLADTNHS---LSRDYGVLIEE  138 (216)
T ss_dssp             --CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSH---HHHHHTCEETT
T ss_pred             --chhhHHHHHHHHHHhCCccCcccceEeCCCCH---HHHHcCCeecc
Confidence              788889998765       3689999886555   99999997543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.75  E-value=1.2e-18  Score=125.22  Aligned_cols=100  Identities=15%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             CCcccCCCeEEEcCCC--------CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         58 GKVAIGGKFELVDCNN--------KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G--------~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      ..+..+|+|+++|.+|        +.+++++++||++||+||++||++ |..++|.|++++++       +++.++.|++
T Consensus         9 ~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~-C~~~~~~l~~l~~~-------~~v~~v~v~~   80 (156)
T 1kng_A            9 LIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVP-CHDEAPLLTELGKD-------KRFQLVGINY   80 (156)
T ss_dssp             ---CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHTTC-------TTSEEEEEEE
T ss_pred             HhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHh-HHHHHHHHHHHHhc-------CCeEEEEEEC
Confidence            3455679999999999        999999999999999999999998 99999999998764       2699999999


Q ss_pred             CCCCCcHHHHHHHHHHhCCCeE-EecCCHHHHHHHHhhcCeeE
Q psy17592        130 DPERDTPELVGKYVKEFSPKFI-GLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~gv~~  171 (183)
                      |   ++++.+++|+++++.+|+ .+.+..   ..+++.||+..
T Consensus        81 ~---~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~v~~  117 (156)
T 1kng_A           81 K---DAADNARRFLGRYGNPFGRVGVDAN---GRASIEWGVYG  117 (156)
T ss_dssp             S---CCHHHHHHHHHHHCCCCSEEEEETT---SHHHHHTTCCS
T ss_pred             C---CCHHHHHHHHHHcCCCCceeeeCch---hHHHHhcCcCc
Confidence            8   688999999999999998 444433   34788888753

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.74  E-value=1.1e-18  Score=133.10  Aligned_cols=104  Identities=16%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             CCcccCCCeEE----EcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         58 GKVAIGGKFEL----VDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        58 ~~~~~~p~f~l----~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      ..+.++|+|++    .|.+|+.++|+|++|||+||+|| ..|||. |..|+..+++.+.++++.    ++++++||.|  
T Consensus        27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~Tpv-Ct~E~~~f~~~~~eF~~~----g~~vigiS~D--   99 (219)
T 3tue_A           27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-CPTEVIAFSDSVSRFNEL----NCEVLACSID--   99 (219)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSS-CCHHHHHHHTTHHHHHTT----TEEEEEEESS--
T ss_pred             ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCC-CchhHhhHHHHHhhhccC----CcEEEEeeCC--
Confidence            45666799994    47788999999999999999999 789995 999999999999999977    8999999998  


Q ss_pred             CCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        133 RDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       133 ~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                        +....++|.+++       +.+|+.+.+....   ++++||+.-+.
T Consensus       100 --s~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~---va~~yGv~~~~  142 (219)
T 3tue_A          100 --SEYAHLQWTLQDRKKGGLGTMAIPILADKTKN---IARSYGVLEES  142 (219)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCSCSSCEEECTTSH---HHHHTTCEETT
T ss_pred             --chhhHHHHhhhhHHhcCccccccccccCcccH---HHHHcCCcccC
Confidence              788999998774       4789999886655   99999997543

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.73  E-value=7.5e-19  Score=127.34  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             EEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC--CCCcHHHHHHHHH
Q psy17592         67 ELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP--ERDTPELVGKYVK  144 (183)
Q Consensus        67 ~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp--~~d~~~~~~~~~~  144 (183)
                      +++|.+|+.+++++++||++||+||++||++ |+.++|.|++++++++..    ++++|+|++|.  ..++.+.+++|.+
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~   96 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPL-CLSELGQAEKWAQDAKFS----SANLITVASPGFLHEKKDGEFQKWYA   96 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHH-HHHHHHHHHHHHTCGGGT----TSEEEEEECTTSTTCCCTTHHHHHHT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcccC----CcEEEEEEcCCCccccCHHHHHHHHH
Confidence            7899999999999999999999999999998 999999999999998765    79999999973  3467888999998


Q ss_pred             HhCCC-eEEecCCHHHHHHHHhhcCee
Q psy17592        145 EFSPK-FIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       145 ~~~~~-~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++.+ ++...+...   .+++.||+.
T Consensus        97 ~~~~~~~~~~~d~~~---~~~~~~~v~  120 (164)
T 2h30_A           97 GLNYPKLPVVTDNGG---TIAQNLNIS  120 (164)
T ss_dssp             TSCCTTSCEEECTTC---HHHHHTTCC
T ss_pred             hCCCCcceEEEcCch---HHHHHcCCC
Confidence            88876 666665443   478888874

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.71  E-value=1e-17  Score=135.04  Aligned_cols=92  Identities=17%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      +|+|+|+|.+|++++|+|++||+|||+|| ..|||. |..|++.+++.    .    .+++++++||.|    +++.+++
T Consensus         4 ~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~-C~~e~~~~~~~----~----~~~~~v~gis~D----~~~~~~~   70 (322)
T 4eo3_A            4 VKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSG-STREAVEFSRE----N----FEKAQVVGISRD----SVEALKR   70 (322)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHH-HHHHHHHHHHS----C----CTTEEEEEEESC----CHHHHHH
T ss_pred             CCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCC-CHHHHHHHHHH----h----hCCCEEEEEeCC----CHHHHHH
Confidence            59999999999999999999999999999 568885 99999887541    1    347999999986    7899999


Q ss_pred             HHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        142 YVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      |.++++.+|+.|.+....   ++++|||.
T Consensus        71 f~~~~~l~fp~l~D~~~~---v~~~ygv~   96 (322)
T 4eo3_A           71 FKEKNDLKVTLLSDPEGI---LHEFFNVL   96 (322)
T ss_dssp             HHHHHTCCSEEEECTTCH---HHHHTTCE
T ss_pred             HHHhhCCceEEEEcCchH---HHHhcCCC
Confidence            999999999999886544   99999985

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.69  E-value=1.4e-17  Score=129.64  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=83.1

Q ss_pred             CCcccCCCeEEEcCCCCeeec-Ccc--CCCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         58 GKVAIGGKFELVDCNNKPVKS-EDF--LGKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l-~~~--~gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      ..+..+|+|++.+.+| .+++ +++  +|||+ |++||++|||. |+.+++.|+++++++++.    ++++|+||+|   
T Consensus         6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~Cpv-C~tEl~~l~~l~~ef~~~----gv~VI~VS~D---   76 (249)
T 3a2v_A            6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPV-CTTEFVSFARRYEDFQRL----GVDLIGLSVD---   76 (249)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHH-HHHHHHHHHHTHHHHHHT----TEEEEEEESS---
T ss_pred             CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcC-hHHHHHHHHHHHHHHHhC----CcEEEEEECC---
Confidence            3455679999999999 7999 999  99975 56899999996 999999999999999865    8999999998   


Q ss_pred             CcHHHHHHHHHH------hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        134 DTPELVGKYVKE------FSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       134 d~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                       +.+...+|.+.      ++.+|+.+.+....   +++.||+..
T Consensus        77 -s~~~~~~w~~~~~~~~~~~i~fPil~D~~~~---ia~~ygv~~  116 (249)
T 3a2v_A           77 -SVFSHIKWKEWIERHIGVRIPFPIIADPQGT---VARRLGLLH  116 (249)
T ss_dssp             -CHHHHHHHHHHHHHHTCCCCCSCEEECTTSH---HHHHHTCCC
T ss_pred             -CHHHHHHHHHHHHHhcCCCCceeEEECCchH---HHHHhCCcc
Confidence             44556666654      36889988875444   888999864

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.68  E-value=6.8e-17  Score=119.42  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=87.9

Q ss_pred             CCCcccCCCeEEEcCCC----------CeeecCcc-CCCEE-EEEEEcCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCe-
Q psy17592         57 LGKVAIGGKFELVDCNN----------KPVKSEDF-LGKWA-LIYFGFTHCPDICPD-ELEKMAAVVNKIDGQPNVPNI-  122 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G----------~~v~l~~~-~gk~v-ll~f~~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v-  122 (183)
                      +..++..|+.++...++          +.++|+++ +||++ |++||+.|||. |.. |++.+++.++++++.    ++ 
T Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~-Ct~~El~~f~~~~~ef~~~----g~d   84 (176)
T 4f82_A           10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPT-CSAQHVPGYVEHAEQLRAA----GID   84 (176)
T ss_dssp             CCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHH-HHHTHHHHHHHHHHHHHHT----TCC
T ss_pred             hhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCC-CCHHHHHHHHHHHHHHHhC----CCC
Confidence            34455668877765433          67899997 99865 56789999997 999 999999999999876    78 


Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHhCCC--eEEecCCHHHHHHHHhhcCeeEee
Q psy17592        123 TPIFISVDPERDTPELVGKYVKEFSPK--FIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       123 ~~v~Is~dp~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      ++++||.|    ++..+++|.++++.+  |+.+.+...   +++++||+..+.
T Consensus        85 ~VigIS~D----~~~~~~~f~~~~~l~~~f~lLsD~~~---~va~ayGv~~~~  130 (176)
T 4f82_A           85 EIWCVSVN----DAFVMGAWGRDLHTAGKVRMMADGSA---AFTHALGLTQDL  130 (176)
T ss_dssp             EEEEEESS----CHHHHHHHHHHTTCTTTSEEEECTTC---HHHHHHTCEEEC
T ss_pred             EEEEEeCC----CHHHHHHHHHHhCCCCCceEEEcCch---HHHHHhCCCccc
Confidence            99999998    789999999999988  999988654   499999998765

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.63  E-value=5.1e-16  Score=114.36  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             hhhcCCCcccCCCeEEEcCCC-CeeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCee-EEEEE
Q psy17592         53 RRRNLGKVAIGGKFELVDCNN-KPVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNIT-PIFIS  128 (183)
Q Consensus        53 ~~~~~~~~~~~p~f~l~d~~G-~~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~-~v~Is  128 (183)
                      .+..+..+..+|+|+|.+.++ +.++|+++ +||++||+|+ ..|||. |..|++.+++.+.++++.    +++ +++||
T Consensus        10 ~~~~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~-Ct~e~~~f~~~~~ef~~~----gv~~VigIS   84 (171)
T 2xhf_A           10 HGSPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPG-SNNHIPEYLSLYDKFKEE----GYHTIACIA   84 (171)
T ss_dssp             -CCCCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTT-TTSSHHHHHHTHHHHHHT----TCCEEEEEE
T ss_pred             CCCcccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC----CCCEEEEEe
Confidence            345566777889999995432 89999994 9999988876 578996 999999999999999876    786 99999


Q ss_pred             eCCCCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        129 VDPERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       129 ~dp~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      .|    ++..+++|.++++.  +|+.|.+....   ++++||+..+.
T Consensus        85 ~D----~~~~~~~w~~~~~~~~~f~lLSD~~~~---~a~ayGv~~~~  124 (171)
T 2xhf_A           85 VN----DPFVMAAWGKTVDPEHKIRMLADMHGE---FTRALGTELDS  124 (171)
T ss_dssp             SS----CHHHHHHHHHHHCTTCCSEEEECTTSH---HHHHHTCBCCC
T ss_pred             CC----CHHHHHHHHHhcCCCCCeEEEEeCCch---HHHHhCCceec
Confidence            98    78999999999998  89999886544   99999998764

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.61  E-value=1.1e-15  Score=113.73  Aligned_cols=104  Identities=9%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             CcccCCCeEEEc--C---------CC----CeeecCc-cCCCEEEEEE-EcCCCCCCcH-HHHHHHHHHHHHh-hCCCCC
Q psy17592         59 KVAIGGKFELVD--C---------NN----KPVKSED-FLGKWALIYF-GFTHCPDICP-DELEKMAAVVNKI-DGQPNV  119 (183)
Q Consensus        59 ~~~~~p~f~l~d--~---------~G----~~v~l~~-~~gk~vll~f-~~t~C~~~C~-~~~~~l~~l~~~~-~~~~~~  119 (183)
                      .+..+|+|++.+  .         +|    +.+++++ ++||++||+| ...|||. |. .|++.+++.+.++ ++.   
T Consensus         3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~-Ct~~e~~~f~~~~~~f~~~~---   78 (182)
T 1xiy_A            3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPT-CSTKMIPGYEEEYDYFIKEN---   78 (182)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHH-HHHTHHHHHHHTHHHHHTTS---
T ss_pred             CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHhC---
Confidence            355679999998  4         67    7999998 6999988876 4789996 99 9999999999999 866   


Q ss_pred             CCee-EEEEEeCCCCCcHHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        120 PNIT-PIFISVDPERDTPELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       120 ~~v~-~v~Is~dp~~d~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                       ++. +++||.|    ++..+++|.++++. +|+.|.+....   ++++||+.++..
T Consensus        79 -g~~~V~gvS~D----~~~~~~~~~~~~~~~~f~lLsD~~~~---~a~~yGv~~~~~  127 (182)
T 1xiy_A           79 -NFDDIYCITNN----DIYVLKSWFKSMDIKKIKYISDGNSS---FTDSMNMLVDKS  127 (182)
T ss_dssp             -CCSEEEEEESS----CHHHHHHHHHHTTCCSSEEEECTTSH---HHHHTTCEEECG
T ss_pred             -CCcEEEEEeCC----CHHHHHHHHHHcCCCCceEEEeCchH---HHHHhCCceecc
Confidence             785 9999988    78999999999998 69999886544   899999987753

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.23  E-value=1.8e-11  Score=86.32  Aligned_cols=57  Identities=19%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+|....+++++||++||+||++||++ |+...|.+.++.+++.+     ++.++.|++|
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~   92 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFYADWCGP-CKMVAPILEELSKEYAG-----KIYIYKVNVD   92 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEECTTCTT-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             hhccccchhHHHHhCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----ceEEEEEECC
Confidence            456778888899999999999999999998 99999999999998853     5899999988

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.20  E-value=2.4e-12  Score=94.39  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=46.8

Q ss_pred             ecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         77 KSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        77 ~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      .+++++||+++|+||++|||+ |+.++|.|.++++++.      ++.++.|++|   +.++.+++|.
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~p-C~~~~P~l~~l~~~~~------~v~~~~v~~d---~~~~~~~~~~  104 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPD-CQINLAALDFAQRLQP------NIELAIISKG---RAEDDLRQRL  104 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHH-HHHHHHHHHHHHHHCT------TEEEEEECHH---HHHHHTTTTT
T ss_pred             HHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHCC------CcEEEEEECC---CCHHHHHHHH
Confidence            356778999999999999999 9999999999998752      6899999887   4555555554

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.19  E-value=3.5e-12  Score=89.62  Aligned_cols=77  Identities=10%  Similarity=0.090  Sum_probs=58.2

Q ss_pred             ccCCCeE-EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         61 AIGGKFE-LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        61 ~~~p~f~-l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      ..+|+|. +.+.++....+++.+||++||+||++||++ |+.+.+.+   .++.+.++      ++.++.|++|.   ..
T Consensus         8 ~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~~~~~~~l~~~~~------~~~~~~vd~~~---~~   77 (134)
T 2fwh_A            8 QTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQKALA------DTVLLQANVTA---ND   77 (134)
T ss_dssp             --CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHH-HHHHHHHTTTSHHHHHHTT------TSEEEEEECTT---CC
T ss_pred             ccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHH-HHHHHHHhcCCHHHHHHhc------CcEEEEEeCCC---Cc
Confidence            3447887 556666666777788999999999999998 99999998   88888763      58999998873   22


Q ss_pred             HHHHHHHHHhC
Q psy17592        137 ELVGKYVKEFS  147 (183)
Q Consensus       137 ~~~~~~~~~~~  147 (183)
                      +...+..++++
T Consensus        78 ~~~~~l~~~~~   88 (134)
T 2fwh_A           78 AQDVALLKHLN   88 (134)
T ss_dssp             HHHHHHHHHTT
T ss_pred             chHHHHHHHcC
Confidence            44455666666

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.19  E-value=2.5e-11  Score=84.41  Aligned_cols=59  Identities=12%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      |+++  +.+++.++....+||+++|+||++||++ |+.+.|.+.++++++++     ++.++.|++|
T Consensus        25 ~~~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~-----~v~~~~vd~d   83 (128)
T 3ul3_B           25 PRLQ--QNGSNIINGVNMKNTVIVLYFFAKWCQA-CTMQSTEMDKLQKYYGK-----RIYLLKVDLD   83 (128)
T ss_dssp             -CCC--CCCCSSSSBTTSCCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGG-----GEEEEEEEGG
T ss_pred             Cccc--cCCccHHHHHHccCCEEEEEEECCCCHH-HHHHhHHHHHHHHHhcC-----CeEEEEEECC
Confidence            5544  5567777777789999999999999998 99999999999999863     6999999988

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.11  E-value=2.7e-11  Score=83.83  Aligned_cols=61  Identities=15%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE--eC
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS--VD  130 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is--~d  130 (183)
                      ++++..+.+|+.......+||+++|+||++||++ |+.+.|.+.+++++++ .    ++.++.|+  .|
T Consensus         7 ~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~-C~~~~~~l~~~~~~~~-~----~v~~~~v~~~~d   69 (126)
T 2l57_A            7 KQINFQSINVVENLEEAKEGIPTIIMFKTDTCPY-CVEMQKELSYVSKERE-G----KFNIYYARLEEE   69 (126)
T ss_dssp             SCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHH-HHHHHHHHHHHHHHSS-S----SCEEEEEETTSS
T ss_pred             CCCCccccchhHHHHHHhCCCcEEEEEECCCCcc-HHHHHHHHHHHHHHhc-C----CeEEEEEeCCCC
Confidence            4555566666555555568999999999999998 9999999999999875 2    69999999  55

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.05  E-value=1.7e-10  Score=78.00  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +..+|+++|+|||+||++ |+...|.+.++.+.+.      ++.++.|.+|
T Consensus        17 ~~~~k~vvv~F~a~wC~~-C~~~~p~~~~~~~~~~------~~~~~~vd~d   60 (105)
T 3zzx_A           17 EAGNKLVVIDFYATWCGP-CKMIAPKLEELSQSMS------DVVFLKVDVD   60 (105)
T ss_dssp             HTTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TEEEEEEETT
T ss_pred             hcCCCEEEEEEECCCCCC-ccCCCcchhhhhhccC------CeEEEEEecc
Confidence            345799999999999998 9999999999998763      6888888887

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.02  E-value=2.1e-10  Score=82.22  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|++||+||++||++ |+.+.|.|.++.+++.+     .+.++.|++|
T Consensus        22 ~~k~vlv~F~a~WC~~-C~~~~p~l~~l~~~~~~-----~~~~~~vd~d   64 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPV-CLQLDDILSKTSSDLSK-----MAAIYLVDVD   64 (149)
T ss_dssp             CSSEEEEEEECTTSHH-HHHHHHHHHHHHTTTTT-----TEEEEEEETT
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHccC-----ceEEEEEECC
Confidence            4899999999999998 99999999999987743     4899999988

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.01  E-value=7.6e-10  Score=75.61  Aligned_cols=64  Identities=13%  Similarity=-0.031  Sum_probs=48.6

Q ss_pred             EEEcCCCCeeecC-ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         67 ELVDCNNKPVKSE-DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        67 ~l~d~~G~~v~l~-~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+.+.+++.+... .-++++++|+||++||++ |+.+.|.+.++.++++..+...++.++.|..|.
T Consensus         8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~   72 (121)
T 2djj_A            8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGH-CKALAPKYEELGALYAKSEFKDRVVIAKVDATA   72 (121)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTT-HHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT
T ss_pred             CeEEecccCHHHHhhcCCCCEEEEEECCCCHh-HHHhhHHHHHHHHHHhhcccCCceEEEEEECcc
Confidence            3455666666544 236899999999999998 999999999999998752111268888888773

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.01  E-value=3.3e-10  Score=80.57  Aligned_cols=61  Identities=11%  Similarity=0.084  Sum_probs=50.8

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++..+.+.+++.+.....+||++||+||++||++ |+.+.|.+.++.+++..     ++.++.|+.|
T Consensus        36 ~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~-----~~~~~~vd~~   96 (148)
T 3p2a_A           36 FDGEVINATAETLDKLLQDDLPMVIDFWAPWCGP-CRSFAPIFAETAAERAG-----KVRFVKVNTE   96 (148)
T ss_dssp             TCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             ccCCceecCHHHHHHHHhcCCcEEEEEECCCCHH-HHHHHHHHHHHHHHcCC-----ceEEEEEECc
Confidence            5667777777766544357899999999999998 99999999999998753     5899999888

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.99  E-value=5.1e-10  Score=77.53  Aligned_cols=63  Identities=8%  Similarity=0.031  Sum_probs=47.3

Q ss_pred             EEEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         67 ELVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        67 ~l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+.+++.+...-. .+++++|+||++||++ |+...|.+.++.+.+..+...+++.++.|..|
T Consensus        16 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~   79 (127)
T 3h79_A           16 RVVELTDETFDSIVMDPEKDVFVLYYVPWSRH-SVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE   79 (127)
T ss_dssp             CCEECCTTTHHHHHTCTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT
T ss_pred             ceEECChhhHHHHHhCCCCCEEEEEECCccHH-HHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc
Confidence            344555554542222 4899999999999998 99999999999988764322457888888887

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.95  E-value=1.6e-10  Score=83.15  Aligned_cols=56  Identities=7%  Similarity=0.088  Sum_probs=45.5

Q ss_pred             cCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         70 DCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        70 d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +..|+.+++++.+||++||+|| ++||++ |+.++|.|   .++.+.+..     ++.++.|+.|.
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~-C~~~~p~l~~~~~~~~~~~~-----~~~~v~vd~~~   93 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMW-CIKMQDQILQSSEFKHFAGV-----HLHMVEVDFPQ   93 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHH-HHHHHHHTTTSHHHHHHHHH-----HCEEEEEECCS
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHh-HHHHHHHHhcCHHHHHHhcC-----cEEEEEecCcc
Confidence            4457778888889999999999 999998 99999999   777655432     57888888773

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.94  E-value=1.3e-09  Score=75.71  Aligned_cols=60  Identities=17%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             EEEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         67 ELVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        67 ~l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+.+++.+..... ++|++||+||++||++ |+.+.|.+.++++++..+   .++.++.|..|
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~---~~~~~~~vd~~   68 (133)
T 2dj3_A            8 PVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGH-CKQLEPIYTSLGKKYKGQ---KDLVIAKMDAT   68 (133)
T ss_dssp             SSEECCTTTCCCCCTCTTSEEEEEECCTTCSH-HHHHHHHHHHHHHHHTTS---SSEEEEEECTT
T ss_pred             ceEEEcCCCHHHHhccCCCcEEEEEECCCChh-HHHHHHHHHHHHHHhcCC---CCEEEEEecCC
Confidence            445556665554333 4899999999999998 999999999999998753   26887777766

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.9e-09  Score=72.72  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+||++||++ |+...|.+.++.++++..    ++.++.|+.|
T Consensus        20 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~----~~~~~~vd~~   63 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEP-CKALKQVFEAISNEPSNS----NVSFLSIDAD   63 (112)
T ss_dssp             TTCCEEEEEECCC--C-HHHHHHHHHHHHHCGGGT----TSEEEEEETT
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHhcCCC----CEEEEEEecc
Confidence            4899999999999998 999999999999986433    6999999988

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.92  E-value=8.5e-10  Score=75.36  Aligned_cols=44  Identities=18%  Similarity=0.164  Sum_probs=38.8

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+||+++|+||++||++ |+.+.|.+.++++++.      ++.++.|++|
T Consensus        28 ~~~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~------~v~~~~vd~d   71 (116)
T 3qfa_C           28 AAGDKLVVVDFSATWCGP-SKMIKPFFHSLSEKYS------NVIFLEVDVD   71 (116)
T ss_dssp             HHTTSCEEEEEECTTCHH-HHHHHHHHHHHHTTCT------TSEEEEEETT
T ss_pred             hcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC------CCEEEEEECC
Confidence            347899999999999998 9999999999988753      5899999888

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.91  E-value=1.3e-09  Score=73.53  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+||++||++ |+.+.|.+.++.+++.      ++.++.|..|
T Consensus        23 ~~k~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~------~~~~~~vd~~   64 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGP-CKMIAPMIEKFSEQYP------QADFYKLDVD   64 (109)
T ss_dssp             SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             cCCEEEEEEECCcCHh-HHHHHHHHHHHHHHCC------CCEEEEEECC
Confidence            5899999999999998 9999999999999864      5889999888

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.91  E-value=7.5e-10  Score=77.66  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+++.+...-..+|++||+||++||++ |+.+.|.+.++++++.++  ..++.++.|..+
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~v~~~~vd~~   78 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGH-CKQFAPEYEKIASTLKDN--DPPIAVAKIDAT   78 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHH-HHTTHHHHHHHHHHHHSS--SSCCEEEEECTT
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHH-HHHhhHHHHHHHHHHhcc--CCceEEEEEeCc
Confidence            445555555432235899999999999998 999999999999998765  334777777666

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.90  E-value=4.8e-10  Score=80.81  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+++|||.|||+||+| |+...|.|.++.+++.+     .+.|+-|.+|.
T Consensus        40 ~~k~VVVdF~A~WCgP-Ck~m~PvleelA~e~~~-----~v~f~kVDVDe   83 (160)
T 2av4_A           40 DERLVCIRFGHDYDPD-CMKMDELLYKVADDIKN-----FCVIYLVDITE   83 (160)
T ss_dssp             SSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHTT-----TEEEEEEETTT
T ss_pred             CCCEEEEEEECCCChh-HHHHHHHHHHHHHHccC-----CcEEEEEECCC
Confidence            3589999999999999 99999999999999854     48899999984

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.90  E-value=1.4e-09  Score=72.28  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |+...|.+.++.+++++     ++.++.|+.|
T Consensus        18 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~   60 (106)
T 3die_A           18 ESGVQLVDFWATACGP-CKMIAPVLEELAADYEG-----KADILKLDVD   60 (106)
T ss_dssp             CSSEEEEEEECSBCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             cCCcEEEEEECCCCHH-HHHHhHHHHHHHHHhcC-----CcEEEEEECC
Confidence            7899999999999998 99999999999998853     4899999988

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=1.1e-09  Score=86.09  Aligned_cols=44  Identities=14%  Similarity=0.222  Sum_probs=39.9

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+||+|+|+||++||++ |+.+.|.+.++.+++++     ++.++.|++|
T Consensus        24 ~~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~~-----~~~~~~vd~~   67 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQH-CLQLTPILESLAAQYNG-----QFILAKLDCD   67 (287)
T ss_dssp             TTTSCEEEEEECTTCTT-TTTTHHHHHHHHHHHTS-----SSEEEEEETT
T ss_pred             cCCCeEEEEEECCCChH-HHHHHHHHHHHHHHcCC-----CeEEEEEeCc
Confidence            35899999999999998 99999999999999863     5899999988

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.90  E-value=2.1e-09  Score=71.78  Aligned_cols=42  Identities=19%  Similarity=0.331  Sum_probs=38.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++|+++|+||++||++ |+...|.+.++.+++.      ++.++.|++|
T Consensus        17 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~------~~~~~~vd~~   58 (105)
T 4euy_A           17 EQQLVLLFIKTENCGV-CDVMLRKVNYVLENYN------YVEKIEILLQ   58 (105)
T ss_dssp             CSSEEEEEEEESSCHH-HHHHHHHHHHHHHTCT------TEEEEEEEEC
T ss_pred             cCCCEEEEEeCCCCcc-hHHHHHHHHHHHHHcC------CceEEEEECC
Confidence            5799999999999998 9999999999998762      6999999998

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.90  E-value=2.4e-09  Score=72.16  Aligned_cols=45  Identities=7%  Similarity=0.005  Sum_probs=39.2

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+||+++|+||++||++ |+.+.|.+.++++++.      ++.++.|+.|
T Consensus        20 ~~~~~~~vlv~f~a~wC~~-C~~~~~~l~~~~~~~~------~v~~~~vd~~   64 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGP-SKAMAPKYEKLAEEYL------DVIFLKLDCN   64 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEECS
T ss_pred             HhcCCCEEEEEEECCcCHh-HHHHCHHHHHHHHHCC------CeEEEEEecC
Confidence            3446899999999999998 9999999999998864      5888888887

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.89  E-value=2.2e-09  Score=76.21  Aligned_cols=44  Identities=16%  Similarity=0.290  Sum_probs=39.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .|++++|+||++||++ |+.+.|.+.++++++++     ++.++.|++|.
T Consensus        22 ~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~-----~v~~~~vd~d~   65 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPT-CMKMDEVLYSIAEKVKN-----FAVIYLVDITE   65 (142)
T ss_dssp             SSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHTT-----TEEEEEEETTT
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC-----CeEEEEEcccc
Confidence            4899999999999998 99999999999998853     59999999884

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.88  E-value=1.4e-09  Score=82.87  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=47.7

Q ss_pred             EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+++.+.....+||+++|+||++||++ |+.+.|.+.++++++++.  ..++.++.|..|
T Consensus        17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~~~~~~vd~~   76 (241)
T 3idv_A           17 VLVLNDANFDNFVADKDTVLLEFYAPWCGH-CKQFAPEYEKIANILKDK--DPPIPVAKIDAT   76 (241)
T ss_dssp             EEEECTTTHHHHHTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHTS--SSCCCEEEEETT
T ss_pred             cEEecccCHHHHHhcCCeEEEEEECCCCHH-HHHhhHHHHHHHHHHhhc--CCceEEEEEecc
Confidence            444455555543347899999999999998 999999999999999865  345888888887

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.88  E-value=5.2e-09  Score=72.38  Aligned_cols=43  Identities=12%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|++||+||++||++ |+...|.+.++.+++++     .+.++.|+.|
T Consensus        34 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~~   76 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGH-CQRLTPEWKKAATALKD-----VVKVGAVNAD   76 (130)
T ss_dssp             CSSCEEEEEECTTCST-TGGGHHHHHHHHHHTTT-----TSEEEEEETT
T ss_pred             CCCeEEEEEECCCCHH-HHhhCHHHHHHHHHhcC-----ceEEEEEeCC
Confidence            4789999999999998 99999999999998753     4888999887

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.87  E-value=3.1e-10  Score=79.57  Aligned_cols=46  Identities=24%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             ecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         77 KSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        77 ~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++.+||++||+||++||++ |+.+.|.+.++.+++       ++.++.|..|
T Consensus        34 ~l~~~~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~-------~v~~~~vd~~   79 (133)
T 3cxg_A           34 VFSSTQNSSIVIKFGAVWCKP-CNKIKEYFKNQLNYY-------YVTLVDIDVD   79 (133)
T ss_dssp             HHTC-CCSEEEEEEECTTCHH-HHHTHHHHHGGGGTE-------ECEEEEEETT
T ss_pred             HHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHhc-------CEEEEEEecc
Confidence            356667999999999999998 999999998876543       4777777776

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.6e-09  Score=75.98  Aligned_cols=45  Identities=13%  Similarity=-0.030  Sum_probs=39.2

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      -++++++|+||++||++ |+.+.|.+.++++++++.    ++.++.|++|
T Consensus        24 ~~~~~vlv~f~a~wC~~-C~~~~p~~~~l~~~~~~~----~v~~~~vd~~   68 (137)
T 2dj0_A           24 DKRVTWIVEFFANWSND-CQSFAPIYADLSLKYNCT----GLNFGKVDVG   68 (137)
T ss_dssp             STTSCEEEEECCTTCST-TTTTHHHHHHHHHHHCSS----SCEEEECCTT
T ss_pred             CCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCCC----CeEEEEEeCc
Confidence            35679999999999998 999999999999998643    6888888777

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.86  E-value=4.6e-10  Score=78.80  Aligned_cols=48  Identities=17%  Similarity=0.190  Sum_probs=41.1

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +..++.+||+++|+||++||++ |+.+.|.+.++.+++.      ++.++.|++|
T Consensus        39 ~~~~~~~~k~vvv~f~a~wC~~-C~~~~~~l~~l~~~~~------~v~~~~v~~~   86 (139)
T 3d22_A           39 LSEASRDGKIVLANFSARWCGP-SRQIAPYYIELSENYP------SLMFLVIDVD   86 (139)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             HHHHhhcCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC------CCEEEEEeCc
Confidence            3334456999999999999998 9999999999998863      6899999988

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.86  E-value=9.8e-10  Score=74.41  Aligned_cols=44  Identities=14%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +||+++|+||++||++ |....|.+.++++++++     ++.++.|++|.
T Consensus        16 ~~~~~lv~f~a~wC~~-C~~~~~~l~~~~~~~~~-----~v~~~~vd~~~   59 (112)
T 2voc_A           16 SEGVVLADFWAPWCGP-SKMIAPVLEELDQEMGD-----KLKIVKIDVDE   59 (112)
T ss_dssp             SSSEEEEEEECTTBGG-GGGHHHHHHHHHHHHTT-----TCEEEEEETTT
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC-----CcEEEEEECCC
Confidence            7899999999999998 99999999999998853     59999999984

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.85  E-value=3.6e-09  Score=73.13  Aligned_cols=43  Identities=16%  Similarity=0.216  Sum_probs=38.8

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+||+++|+||++||++ |..+.|.|.++.+++.      ++.++.|+.|
T Consensus        36 ~~~k~vvv~f~a~wC~~-C~~~~~~l~~l~~~~~------~v~~~~vd~d   78 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGP-CRFIAPFFADLAKKLP------NVLFLKVDTD   78 (124)
T ss_dssp             HTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHCS------SEEEEEEETT
T ss_pred             hcCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC------CcEEEEEECc
Confidence            36999999999999998 9999999999998863      6899999887

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.84  E-value=2e-09  Score=74.98  Aligned_cols=56  Identities=23%  Similarity=0.266  Sum_probs=43.7

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHH--HHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMA--AVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~--~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .+||++||+||++||++ |+.+.|.|.  ++.+.+++     ++.++.|+++...+..+..++|
T Consensus        27 ~~~k~vlv~f~a~wC~~-C~~~~~~l~~~~~~~~~~~-----~~~~~~vd~~~~~~~~~l~~~~   84 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTD-CRALDKSLRNQKNTALIAK-----HFEVVKIDVGNFDRNLELSQAY   84 (133)
T ss_dssp             HHTCCEEEEEECTTCHH-HHHHHHHHTSHHHHHHHHH-----HCEEEEEECTTTTSSHHHHHHT
T ss_pred             hcCCcEEEEEcCCCCHH-HHHHHHHhCCHHHHHHhcC-----CEEEEEEeCCcccchHHHHHHh
Confidence            46999999999999998 999999999  99888753     5899999984222344444443

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.84  E-value=1.7e-09  Score=72.20  Aligned_cols=43  Identities=21%  Similarity=0.149  Sum_probs=39.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|++++|+||++||++ |....|.+.++.+++.+     ++.++.|+.|
T Consensus        20 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~   62 (109)
T 3tco_A           20 NNKLVLVDCWAEWCAP-CHLYEPIYKKVAEKYKG-----KAVFGRLNVD   62 (109)
T ss_dssp             HSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETT
T ss_pred             cCCeEEEEEECCCCHH-HHhhhHHHHHHHHHhCC-----CceEEEEccc
Confidence            5899999999999998 99999999999998753     5889999888

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.83  E-value=6.7e-09  Score=69.94  Aligned_cols=57  Identities=16%  Similarity=0.260  Sum_probs=44.7

Q ss_pred             EEcCCCCeeecCc-cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSED-FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~-~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+++.+...- -.|++++|+||++|||+ |....|.+.++.+++.+     ++.++.|+.|
T Consensus         9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~v~~~~v~~~   66 (115)
T 1thx_A            9 VITITDAEFESEVLKAEQPVLVYFWASWCGP-CQLMSPLINLAANTYSD-----RLKVVKLEID   66 (115)
T ss_dssp             EEECCGGGHHHHTTTCSSCEEEEEECTTCTT-HHHHHHHHHHHHHHTTT-----TCEEEEEEST
T ss_pred             eEEeeccchhhHhhcCCceEEEEEECCCCHH-HHHhHHHHHHHHHHhCC-----cEEEEEEEcC
Confidence            3444555444222 26899999999999998 99999999999998753     5999999988

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.83  E-value=1.8e-09  Score=71.85  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=38.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+++|+||++||++ |....|.+.++.+++.+     ++.++.|+.|
T Consensus        16 ~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~v~~~~v~~~   58 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGP-CRMMAPVLEEFAEAHAD-----KVTVAKLNVD   58 (105)
T ss_dssp             SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHSTT-----TCEEEEEETT
T ss_pred             CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CcEEEEEECc
Confidence            5789999999999998 99999999999998753     5899999988

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.83  E-value=4.1e-09  Score=70.50  Aligned_cols=42  Identities=17%  Similarity=0.278  Sum_probs=38.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+||++||++ |+...|.+.++.+++.      ++.++.|+.|
T Consensus        20 ~~~~v~v~f~a~wC~~-C~~~~~~~~~~~~~~~------~~~~~~vd~~   61 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGP-CLRIAPAFSSMSNKYP------QAVFLEVDVH   61 (107)
T ss_dssp             TTSCEEEEEECSSCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             CCCEEEEEEECCCChh-hHHHHHHHHHHHHHCC------CcEEEEEECc
Confidence            5899999999999998 9999999999999872      6899999988

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.83  E-value=4.7e-09  Score=70.64  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+++|+||++||++ |+...|.+.++.+++.+     ++.++.|+.|
T Consensus        22 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~v~~~   64 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGP-CRQIAPSLEAIAAEYGD-----KIEIVKLNID   64 (112)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             CCCeEEEEEECCCCHh-HHhcCHHHHHHHHHhcC-----CeEEEEEEcC
Confidence            4799999999999998 99999999999998753     5899999988

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=3.3e-09  Score=73.09  Aligned_cols=56  Identities=14%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+++.+. ..++++ ++|+||++||++ |+.+.|.+.++++++.+.    ++.++.|++|
T Consensus         9 v~~l~~~~f~-~~~~~~-vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~----~v~~~~vd~~   64 (126)
T 1x5e_A            9 VRVITDENWR-ELLEGD-WMIEFYAPWCPA-CQNLQPEWESFAEWGEDL----EVNIAKVDVT   64 (126)
T ss_dssp             EEECCTTTHH-HHTSSE-EEEEEECSSCHH-HHHHHHHHHHHHHHHGGG----TCEEEEEETT
T ss_pred             cEEecHHHHH-HHhCCC-EEEEEECCCCHH-HHHHhHHHHHHHHHhccC----CeEEEEEECc
Confidence            3344444443 123444 899999999998 999999999999988643    6899999887

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.83  E-value=6.4e-09  Score=69.29  Aligned_cols=43  Identities=12%  Similarity=0.162  Sum_probs=38.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+++|+||++||++ |....|.+.++.+++++     ++.++.|+.|
T Consensus        18 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~v~~~   60 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGP-CRIIAPVVDEIAGEYKD-----KLKCVKLNTD   60 (107)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             CCCcEEEEEECCCCHh-HHHHHHHHHHHHHHhCC-----ceEEEEEECC
Confidence            4799999999999998 99999999999998753     5899999888

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.83  E-value=7e-11  Score=86.00  Aligned_cols=62  Identities=11%  Similarity=0.142  Sum_probs=47.5

Q ss_pred             CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ++++...+.+ +.++....+||++||+||++||++ |+.+.|.|.++.+....     ++.|+.|++|.
T Consensus        27 ~~~i~w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~-C~~~~p~l~~~~~~~~~-----~~~~~~v~~d~   88 (164)
T 1sen_A           27 GDHIHWRTLE-DGKKEAAASGLPLMVIIHKSWCGA-CKALKPKFAESTEISEL-----SHNFVMVNLED   88 (164)
T ss_dssp             CTTSCBCCHH-HHHHHHHHHTCCEEEEEECTTCHH-HHHHHHHHHTCHHHHHH-----HTTSEEEEEEG
T ss_pred             cccccccCHH-HHHHHHHhcCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhhc-----CCeEEEEEecC
Confidence            3556665555 456666678999999999999998 99999999997765432     46778888773

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.83  E-value=5.2e-09  Score=71.35  Aligned_cols=57  Identities=16%  Similarity=0.307  Sum_probs=43.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .|++++|+||++|||+ |+.+.|.+.++.++++       ..++.+.+|.. .+.+...++.++++
T Consensus        28 ~~~~~~v~f~a~wC~~-C~~~~p~l~~~~~~~~-------~~v~~~~~~~~-~~~~~~~~~~~~~~   84 (118)
T 1zma_A           28 KKETATFFIGRKTCPY-CRKFAGTLSGVVAETK-------AHIYFINSEEP-SQLNDLQAFRSRYG   84 (118)
T ss_dssp             TTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHC-------CCCEEEETTCG-GGHHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCcc-HHHHHHHHHHHHHhcC-------CeEEEEECCCc-CcHHHHHHHHHHcC
Confidence            5789999999999998 9999999999998763       34556666631 23455667777776

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.82  E-value=3.8e-09  Score=70.04  Aligned_cols=56  Identities=16%  Similarity=0.179  Sum_probs=43.8

Q ss_pred             EcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         69 VDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        69 ~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+++.+..... .+|+++|+||++||++ |....|.+.++.+++++     ++.++.|+.|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~   59 (105)
T 1fb6_A            3 QDVNDSSWKEFVLESEVPVMVDFWAPWCGP-CKLIAPVIDELAKEYSG-----KIAVYKLNTD   59 (105)
T ss_dssp             EECCTTTHHHHTTTCSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             eechhhhHHHHHhcCCCcEEEEEECCCChH-HHHHHHHHHHHHHHhcC-----ceEEEEEcCc
Confidence            3445554443222 4789999999999998 99999999999998753     5889999887

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.82  E-value=4e-09  Score=70.45  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .||+++|+||++||++ |+...|.+.++.+++.+     ++.++.|+.|.
T Consensus        19 ~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~v~~~~   62 (108)
T 2trx_A           19 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG-----KLTVAKLNIDQ   62 (108)
T ss_dssp             CSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TEEEEEEETTT
T ss_pred             cCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhCC-----CcEEEEEECCC
Confidence            5799999999999998 99999999999998753     59999998883

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.81  E-value=7.6e-10  Score=80.58  Aligned_cols=50  Identities=18%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +.++..+||++||+||++||++ |+.+.+.+   .++.+.+++     ++.++.|++|.
T Consensus        40 ~~~a~~~gk~vlv~F~A~WC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~v~v~~d~   92 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFTGYGCVN-CRKMELAVWTDPKVSSIINN-----DYVLITLYVDN   92 (172)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHH-HHHHHHHTTTSHHHHHHHHH-----HCEEEEEETTC
T ss_pred             HHHHHHcCCeEEEEEECCCCHH-HHHHHHHhcCCHHHHHHhcC-----CEEEEEEecCc
Confidence            4444467999999999999998 99963333   444444432     58999999884

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.80  E-value=5.6e-09  Score=71.48  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             EcCCCCeeecC-cc--CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         69 VDCNNKPVKSE-DF--LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        69 ~d~~G~~v~l~-~~--~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+|...++. .+  .||++||+||++||++ |+...|.|.++.+++  .    ++.++.|++|
T Consensus         6 ~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~-C~~~~~~l~~l~~~~--~----~v~~~~vd~~   63 (118)
T 2f51_A            6 VHFNGTHEALLNRIKEAPGLVLVDFFATWCGP-CQRLGQILPSIAEAN--K----DVTFIKVDVD   63 (118)
T ss_dssp             EEECSCHHHHHHHHHHCSSCEEEEEECTTCHH-HHHHHHHHHHHHHHC--T----TSEEEEEETT
T ss_pred             eEecCCHHHHHHHHHhCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHC--C----CeEEEEEECC
Confidence            44455544444 23  4899999999999998 999999999999987  2    6899999988

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.80  E-value=7.6e-09  Score=70.99  Aligned_cols=44  Identities=9%  Similarity=0.082  Sum_probs=38.7

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+||+++|+||++|||+ |+...|.+.++.+++.      ++.++.|+.|
T Consensus        34 ~~~~~~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~------~~~~~~vd~~   77 (124)
T 1faa_A           34 AAGDKPVVLDMFTQWCGP-CKAMAPKYEKLAEEYL------DVIFLKLDCN   77 (124)
T ss_dssp             HTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEECS
T ss_pred             hcCCCEEEEEEECCcCHh-HHHHhHHHHHHHHHCC------CCEEEEEecC
Confidence            347899999999999998 9999999999998864      5888888876

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.78  E-value=6.1e-09  Score=70.91  Aligned_cols=42  Identities=17%  Similarity=0.232  Sum_probs=38.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+||++||++ |+...|.|.++.+++.      ++.++.|++|
T Consensus        29 ~~k~vvv~F~a~wC~~-C~~~~p~l~~~~~~~~------~v~~~~vd~~   70 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGP-CKMMQPHLTKLIQAYP------DVRFVKCDVD   70 (114)
T ss_dssp             HCSEEEEEEECTTCHH-HHHTHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC------CCEEEEEECC
Confidence            5899999999999998 9999999999998863      4889999888

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.78  E-value=9.8e-09  Score=68.95  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ||+++|+||++||++ |....|.+.++.+++.+     ++.++.|+.|
T Consensus        24 ~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~vd~~   65 (112)
T 1ep7_A           24 HKPIVVDFTATWCGP-CKMIAPLFETLSNDYAG-----KVIFLKVDVD   65 (112)
T ss_dssp             TCCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETT
T ss_pred             CCeEEEEEECCCCHH-HHHHHHHHHHHHHHcCC-----CeEEEEEECC
Confidence            899999999999998 99999999999998742     6899999887

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.78  E-value=7.7e-09  Score=68.59  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=39.0

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+||+++|+||++||++ |+...|.+.++.+++.      ++.++.|+.|
T Consensus        17 ~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~------~~~~~~vd~~   60 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGP-CKMIKPFFHSLSEKYS------NVIFLEVDVD   60 (105)
T ss_dssp             HTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHST------TSEEEEEETT
T ss_pred             hcCCCeEEEEEECCCChh-hHHHHHHHHHHHHHcc------CeEEEEEEhh
Confidence            346899999999999998 9999999999998864      5889999887

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.78  E-value=9.5e-09  Score=71.96  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=38.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|++||+||++||++ |+...|.|.++.+++++     ++.++.|++|
T Consensus        37 ~~k~~lv~f~a~wC~~-C~~~~~~l~~l~~~~~~-----~v~~~~vd~~   79 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGP-CKMVAPILDELAKEYDG-----QIVIYKVDTE   79 (136)
T ss_dssp             CSSCEEEEEECTTSHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             CCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhcC-----CEEEEEEeCC
Confidence            4689999999999998 99999999999998753     5899999988

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.78  E-value=1.2e-09  Score=82.22  Aligned_cols=58  Identities=14%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             EEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         67 ELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        67 ~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+.+++.+.....+|+++||+||++||++ |..+.|.+.++.+++++     .+.++.|++|
T Consensus        98 ~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~~-----~v~~~~vd~~  155 (210)
T 3apq_A           98 EIITLERREFDAAVNSGELWFVNFYSPGCSH-CHDLAPTWREFAKEVDG-----LLRIGAVNCG  155 (210)
T ss_dssp             TSEECCHHHHHHHHHHSCCEEEEEECTTCHH-HHHHHHHHHHHHHHTBT-----TBEEEEEETT
T ss_pred             ceEEecHHHHHHHHccCCcEEEEEeCCCChh-HHHHHHHHHHHHHHhcC-----ceEEEEEECC
Confidence            3444444444433346899999999999998 99999999999998753     5899999988

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.77  E-value=8.5e-09  Score=70.51  Aligned_cols=43  Identities=16%  Similarity=0.253  Sum_probs=38.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||++||+||++||++ |+...|.|.++.+++..     ++.++.|++|
T Consensus        30 ~~k~vlv~f~a~~C~~-C~~~~~~l~~~~~~~~~-----~v~~~~vd~d   72 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGP-CKILGPRLEKMVAKQHG-----KVVMAKVDID   72 (119)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----SSEEEEEETT
T ss_pred             CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CeEEEEEeCC
Confidence            5799999999999998 99999999999988743     5899999988

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.77  E-value=9.9e-09  Score=70.14  Aligned_cols=43  Identities=12%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++||++ |+...|.+.++.+++.+     ++.++.|++|
T Consensus        20 ~~~~~lv~f~a~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~~   62 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGP-CQNFAPEFELLARMIKG-----KVRAGKVDCQ   62 (122)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TCEEEEEETT
T ss_pred             CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CeEEEEEeCc
Confidence            4789999999999998 99999999999998853     5899999888

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.77  E-value=8.1e-09  Score=69.10  Aligned_cols=46  Identities=11%  Similarity=0.092  Sum_probs=39.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |+...|.+.++.+++...  ..++.++.|+.|
T Consensus        20 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~~vd~~   65 (111)
T 3uvt_A           20 AEGITFIKFYAPWCGH-CKTLAPTWEELSKKEFPG--LAGVKIAEVDCT   65 (111)
T ss_dssp             HSSEEEEEEECSSCHH-HHHHHHHHHHHHTCCCCC---CCEEEEEEETT
T ss_pred             cCCcEEEEEECCCChh-HHHhhHHHHHHHHHhhcc--CCceEEEEEecc
Confidence            3889999999999998 999999999999876543  347888888887

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.77  E-value=5.1e-09  Score=73.78  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=39.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||+||++||++ |+...|.+.++.+++.+     ++.++.|.+|
T Consensus        23 ~~~~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~-----~v~~~~vd~~   65 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPY-CKAMEPYFEEYAKEYGS-----SAVFGRINIA   65 (140)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TSEEEEEETT
T ss_pred             CCCcEEEEEECCCChh-HHHHHHHHHHHHHHhCC-----ceEEEEEECC
Confidence            4899999999999998 99999999999999863     5899999988

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.76  E-value=8.6e-09  Score=70.45  Aligned_cols=42  Identities=24%  Similarity=0.307  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+++|+||++||++ |....|.+.++.+++.      ++.++.|+.|
T Consensus        33 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~------~~~~~~vd~~   74 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGP-CRIMAPVFADLAKKFP------NAVFLKVDVD   74 (122)
T ss_dssp             TTCCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             cCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC------CcEEEEEECC
Confidence            5899999999999998 9999999999998764      4889999888

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.76  E-value=9.2e-09  Score=68.36  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+++++|+||++||++ |....|.+.++.+++.+     ++.++.|+.|.
T Consensus        19 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~~   62 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGP-CKMIGPALGEIGKEFAG-----KVTVAKVNIDD   62 (107)
T ss_dssp             CSSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----SEEEEEEETTT
T ss_pred             CCCEEEEEEECCCChh-HHHHhHHHHHHHHHhCC-----cEEEEEEECCC
Confidence            5799999999999998 99999999999998853     69999999883

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.75  E-value=1.2e-08  Score=68.82  Aligned_cols=42  Identities=14%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+||++||++ |....|.+.++.+++.      ++.++.|++|
T Consensus        25 ~~k~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~------~v~~~~vd~~   66 (112)
T 1syr_A           25 QNELVIVDFFAEWCGP-CKRIAPFYEECSKTYT------KMVFIKVDVD   66 (112)
T ss_dssp             HCSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             cCCeEEEEEECCCCHH-HHHHHHHHHHHHHHcC------CCEEEEEECC
Confidence            6899999999999998 9999999999998863      5899999888

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.75  E-value=1.3e-08  Score=68.16  Aligned_cols=43  Identities=16%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |+...|.+.++.+++.+     ++.++.|++|
T Consensus        21 ~~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~~-----~v~~~~vd~~   63 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHV-CQKVTPVLEELRLNYEE-----SFGFYYVDVE   63 (111)
T ss_dssp             SCCCEEEEEECSSCHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETT
T ss_pred             cCCEEEEEEeCCCChh-HHHHHHHHHHHHHHcCC-----ceEEEEEECC
Confidence            5799999999999998 99999999999998753     5899999988

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.74  E-value=1.8e-08  Score=67.62  Aligned_cols=52  Identities=21%  Similarity=0.346  Sum_probs=43.0

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .+|++++|+||++||++ |....|.++++.+++.      ++.++.|+.|   +.++..++|
T Consensus        24 ~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~------~v~~~~v~~~---~~~~~~~~~   75 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPP-CKMIAPIFAELAKKFP------NVTFLKVDVD---ELKAVAEEW   75 (113)
T ss_dssp             TSSSEEEEEEECSSCHH-HHHHHHHHHHHHHHCS------SEEEEEEETT---TCHHHHHHH
T ss_pred             hcCCeEEEEEECCCCHH-HHHHHHHHHHHHHhCC------CcEEEEEEcc---ccHHHHHhC
Confidence            35899999999999998 9999999999998863      6899999988   445554444

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.74  E-value=7.4e-09  Score=71.08  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||+++|+||++||++ |....|.+.++.+++..+    ++.++.|+.|
T Consensus        32 ~~k~vvv~f~a~~C~~-C~~~~~~l~~l~~~~~~~----~v~~~~vd~d   75 (121)
T 2j23_A           32 GDKVVVIDFWATWCGP-CKMIGPVFEKISDTPAGD----KVGFYKVDVD   75 (121)
T ss_dssp             SSSCEEEEEECTTCST-HHHHHHHHHHHHTSTHHH----HSEEEEEETT
T ss_pred             CCCEEEEEEECCCCHh-HHHHHHHHHHHHHHCcCC----cEEEEEEECc
Confidence            5899999999999998 999999999998877542    4899999988

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.74  E-value=1.9e-08  Score=66.72  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|++++|+||++|||+ |....|.+.++.++++     +++.++.|+.|
T Consensus        18 ~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~~~v~~~   61 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGP-CKMISPKLVELSTQFA-----DNVVVLKVDVD   61 (106)
T ss_dssp             HTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHTT-----TTEEEEEEETT
T ss_pred             cCCCEEEEEEECCcCHH-HHHhhHHHHHHHHHhC-----CCeEEEEEecc
Confidence            46899999999999998 9999999999999875     26999999988

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.74  E-value=1.1e-08  Score=73.23  Aligned_cols=42  Identities=14%  Similarity=0.295  Sum_probs=38.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||++||+||++||++ |+...|.+.++.+++.      ++.++.|++|
T Consensus        31 ~~~~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~------~v~~~~vd~~   72 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQ-CAQMNEVMAELAKELP------QVSFVKLEAE   72 (153)
T ss_dssp             TTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             CCCeEEEEEECCCCHh-HHHHHHHHHHHHHHcC------CeEEEEEECC
Confidence            5899999999999998 9999999999998862      6899999988

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.74  E-value=9e-09  Score=71.34  Aligned_cols=42  Identities=12%  Similarity=0.230  Sum_probs=38.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++||+||++||++ |....|.+.++.+++.      ++.++.|++|
T Consensus        36 ~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~------~v~~~~vd~d   77 (125)
T 1r26_A           36 EDILTVAWFTAVWCGP-CKTIERPMEKIAYEFP------TVKFAKVDAD   77 (125)
T ss_dssp             SSSCEEEEEECTTCHH-HHHTHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             cCCEEEEEEECCcCHh-HHHHHHHHHHHHHHCC------CCEEEEEECC
Confidence            6899999999999998 9999999999998862      6899999988

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.74  E-value=9.8e-09  Score=67.86  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=38.7

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+||+++|+||++|||+ |....|.+.++.+++.      ++.++.|+.|
T Consensus        17 ~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~------~~~~~~v~~~   59 (104)
T 2vim_A           17 NKGRLIVVDFFAQWCGP-CRNIAPKVEALAKEIP------EVEFAKVDVD   59 (104)
T ss_dssp             TTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             cCCCeEEEEEECCCCHH-HHHhhHHHHHHHHHCC------CCEEEEEecc
Confidence            46899999999999998 9999999999998763      6899999988

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=1.2e-08  Score=70.54  Aligned_cols=47  Identities=13%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||+||++||++ |+...|.+.++.+++.+.. .+++.++.|+.|
T Consensus        24 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~-~~~~~~~~vd~~   70 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGH-CKNLEPEWAAAASEVKEQT-KGKVKLAAVDAT   70 (133)
T ss_dssp             SSSEEEEEEECTTCHH-HHTHHHHHHHHHHHHHHHT-TTSEEEEEEETT
T ss_pred             CCCeEEEEEECCCCHH-HHhhcHHHHHHHHHHHhhc-CCcEEEEEEECC
Confidence            4789999999999998 9999999999999886210 126899988887

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.73  E-value=1e-08  Score=71.83  Aligned_cols=57  Identities=9%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC--cHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD--TPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d--~~~~~~~~~~~~~  147 (183)
                      ++ +++|+||++||++ |+.+.|.+.++.+++       ++.++.|+++...+  ..+...+..++++
T Consensus        31 ~~-~vlv~F~a~wC~~-C~~~~p~l~~l~~~~-------~v~~~~vd~~~~~~~~~~d~~~~l~~~~~   89 (135)
T 3emx_A           31 QG-DAILAVYSKTCPH-CHRDWPQLIQASKEV-------DVPIVMFIWGSLIGERELSAARLEMNKAG   89 (135)
T ss_dssp             TS-SEEEEEEETTCHH-HHHHHHHHHHHHTTC-------CSCEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             CC-cEEEEEECCcCHh-hhHhChhHHHHHHHC-------CCEEEEEECCCchhhhhhhhhHHHHHHcC
Confidence            45 8999999999998 999999999998764       38889998863222  1134445566666

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.73  E-value=1.1e-08  Score=73.52  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||+||++||++ |+...|.+.++++++.+     ++.++.|+.|
T Consensus        63 ~~~~vlv~F~a~wC~~-C~~~~p~l~~la~~~~~-----~v~~~~vd~~  105 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGP-CRQMAPQFQAAAATLAG-----QVRLAKIDTQ  105 (155)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TCEEEEEETT
T ss_pred             CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHccC-----CEEEEEEeCC
Confidence            5799999999999998 99999999999999853     5899999988

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.71  E-value=6.8e-09  Score=68.39  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|++++|+||++|||+ |....|.+.++.+++.      ++.++.|+.|
T Consensus        15 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~------~~~~~~v~~~   56 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAP-CLILAPIIEELAEDYP------QVGFGKLNSD   56 (104)
T ss_dssp             HSSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             cCCcEEEEEECCCChh-HHHHhHHHHHHHHHcC------CceEEEEECC
Confidence            5899999999999998 9999999999998863      4899999988

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.71  E-value=3.9e-09  Score=71.52  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=40.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +||+++|+||++||++ |+...|.+.++.++++..  ..++.++.|..+.
T Consensus        23 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~v~~~~vd~~~   69 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGH-CKALAPEYAKAAGKLKAE--GSEIRLAKVDATE   69 (120)
T ss_dssp             HCSEEEEEEECSSCST-TSTTHHHHHHHHHTTTTT--CCCCBCEEEETTT
T ss_pred             cCCeEEEEEECCCCHH-HHHhhHHHHHHHHHHhcc--CCcEEEEEEcCCC
Confidence            5899999999999998 999999999999988754  3467888887763

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.70  E-value=2e-08  Score=67.68  Aligned_cols=42  Identities=12%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++++++|+||++||++ |....|.+.++.+++.      ++.++.|+.|
T Consensus        18 ~~~~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~------~v~~~~vd~~   59 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPH-CKNMEKVLDKFGARAP------QVAISSVDSE   59 (110)
T ss_dssp             TCSEEEEEEECSSCST-HHHHHHHHHHHHTTCT------TSCEEEEEGG
T ss_pred             cCCCEEEEEECCCCHh-HHHHHHHHHHHHHHCC------CcEEEEEcCc
Confidence            5789999999999998 9999999999887642      6888999887

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.70  E-value=1.1e-08  Score=71.76  Aligned_cols=42  Identities=14%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +||++||+||++||++ |+...|.|.++.+++.      ++.++.|..|
T Consensus        29 ~~~~vvv~f~a~wC~~-C~~~~p~l~~la~~~~------~v~~~~vd~~   70 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPM-CLVVNQHLSVLARKFP------ETKFVKAIVN   70 (135)
T ss_dssp             SSCEEEEEECCTTCHH-HHHHHHHHHHHHHHCS------SEEEEEECCS
T ss_pred             CCCEEEEEEECCCChH-HHHHHHHHHHHHHHCC------CcEEEEEEhh
Confidence            4689999999999998 9999999999998863      6888888877

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.69  E-value=9.8e-09  Score=77.97  Aligned_cols=59  Identities=12%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             EEEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         67 ELVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        67 ~l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .....+.+.+...-+ ++|+++|+||++||++ |+.+.|.+.++++++++     ++.++.|++|.
T Consensus        13 ~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~~-----~v~~~~vd~d~   72 (222)
T 3dxb_A           13 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG-----KLTVAKLNIDQ   72 (222)
T ss_dssp             CCEECCTTTHHHHHTTCSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETTT
T ss_pred             CceeCCHHHHHHHHHhcCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhcC-----CcEEEEEECCC
Confidence            344444444432112 5899999999999998 99999999999998863     48899998884

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.15  E-value=1.9e-09  Score=74.72  Aligned_cols=52  Identities=21%  Similarity=0.423  Sum_probs=43.3

Q ss_pred             CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         73 NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        73 G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+++...+||++||+||++||++ |+...|.+   .++.+.++.     ++.++.|++|
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~~~vd~~   63 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPY-CQQMNTFVLSDPGVSRLLEA-----RFVVASVSVD   63 (130)
Confidence            5567777788999999999999998 99999999   888776542     5788888775

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.69  E-value=3e-08  Score=65.83  Aligned_cols=43  Identities=16%  Similarity=0.284  Sum_probs=38.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++||++ |....|.+.++.+++.+     ++.++.|+.|
T Consensus        17 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~v~~~   59 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAP-CRMIAPILEEIAKEYEG-----KLLVAKLDVD   59 (109)
T ss_dssp             HCSEEEEEEECTTCHH-HHHHHHHHHHHHHHTBT-----TBEEEEEETT
T ss_pred             CCCeEEEEEECCCCHH-HHHhhHHHHHHHHHhhC-----ceEEEEEECC
Confidence            5799999999999998 99999999999998753     5899999988

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.68  E-value=2.3e-08  Score=69.49  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +||+++|+||++||++ |+...|.+.++.+++.+     ++.++.|++|.
T Consensus        39 ~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~-----~v~~~~vd~~~   82 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGP-AKMIAPILDEIADEYQG-----KLTVAKLNIDQ   82 (128)
T ss_dssp             CSSEEEEEEECSSCHH-HHHTHHHHHHHHHHTTT-----TEEEEEEETTT
T ss_pred             cCCEEEEEEECCCCHH-HHHHhHHHHHHHHHhcC-----CeEEEEEECCC
Confidence            5899999999999998 99999999999998753     59999999884

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.67  E-value=1.7e-08  Score=68.63  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++.+||+++|+||++||++ |+...|.+.++.+++       ++.++.|+.|
T Consensus        28 l~~~~~~~~vv~f~a~wC~~-C~~~~~~~~~~~~~~-------~~~~~~vd~~   72 (117)
T 2xc2_A           28 LEQHKNKLVVVDFFATWCGP-CKTIAPLFKELSEKY-------DAIFVKVDVD   72 (117)
T ss_dssp             HHHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHTTS-------SSEEEEEETT
T ss_pred             HHhCCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHc-------CcEEEEEECC
Confidence            33447899999999999998 999999999987754       5788888887

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.67  E-value=3.1e-08  Score=67.39  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=38.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|++++|+||++||++ |+...|.+.++.++++.     ++.++.|++|
T Consensus        29 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~   71 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGP-CKMVAPVLEEIATERAT-----DLTVAKLDVD   71 (121)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CeEEEEEECC
Confidence            4789999999999998 99999999999998753     5899999988

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.66  E-value=3.6e-08  Score=69.57  Aligned_cols=50  Identities=14%  Similarity=0.369  Sum_probs=41.2

Q ss_pred             CEEEEEEEcCCC--CCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         84 KWALIYFGFTHC--PDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        84 k~vll~f~~t~C--~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      +++||.||++||  ++ |+...|.|.++.+++.+     ++.|+-|++|   +.++...+|
T Consensus        34 ~~vlVdF~A~wCr~gp-Ck~iaPvleela~e~~~-----~v~~~KVdvD---e~~~la~~y   85 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPE-AADLAVVLPELINAFPG-----RLVAAEVAAE---AERGLMARF   85 (137)
T ss_dssp             SEEEEEECCCTTTCTT-HHHHHHHHHHHHHTSTT-----TEEEEEECGG---GHHHHHHHH
T ss_pred             CcEEEEEeCCccCCCc-hhhHHhHHHHHHHHccC-----CcEEEEEECC---CCHHHHHHc
Confidence            499999999999  99 99999999999998853     6999999988   444443333

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.66  E-value=2.7e-08  Score=67.29  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=38.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+++|+||++||++ |....|.+.++.+++.      ++.++.|+.|
T Consensus        27 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~------~~~~~~v~~~   68 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGP-CRVIAPVFAEYAKKFP------GAIFLKVDVD   68 (118)
T ss_dssp             HTCCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT
T ss_pred             CCCEEEEEEECCCCHh-HHHHhHHHHHHHHHCC------CcEEEEEEcc
Confidence            4899999999999998 9999999999998863      6889999887

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.65  E-value=3.2e-08  Score=76.00  Aligned_cols=46  Identities=11%  Similarity=0.088  Sum_probs=40.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.+.++++++.+.  ..++.++.|++|
T Consensus        29 ~~~~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~~~--~~~v~~~~vd~~   74 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGH-CIAFAPTWXALAEDVKAW--RPALYLAALDCA   74 (244)
T ss_dssp             CSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTGGG--TTTEEEEEEETT
T ss_pred             CCCeEEEEEECCcCHH-HHHHHHHHHHHHHHHHhc--cCcEEEEEEeCC
Confidence            4699999999999998 999999999999998752  237999999986

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.63  E-value=3.3e-08  Score=68.09  Aligned_cols=45  Identities=24%  Similarity=0.410  Sum_probs=39.0

Q ss_pred             ccCCCEEEEEEEcC-------CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFT-------HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t-------~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+||+++|+||++       |||+ |+...|.+.++.+++.     +++.++.|.++
T Consensus        21 ~~~~~~v~v~F~a~~~~~~~~wC~~-C~~~~p~l~~~~~~~~-----~~~~~~~vd~~   72 (123)
T 1wou_A           21 QHNGKTIFAYFTGSKDAGGKSWCPD-CVQAEPVVREGLKHIS-----EGCVFIYCQVG   72 (123)
T ss_dssp             TTTTSEEEEEEECCBCTTCCBSCHH-HHHHHHHHHHHGGGCC-----TTEEEEEEECC
T ss_pred             HhCCCEEEEEEEccCCCCCCCcCHH-HHHhhHHHHHHHHHcC-----CCcEEEEEECC
Confidence            33589999999999       9998 9999999999988764     26999999984

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.63  E-value=5.8e-08  Score=68.10  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=37.2

Q ss_pred             cCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         70 DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        70 d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+++.+...-..++.++|+||++||++ |....|.+.++.+++.+     ++.++.|+.|
T Consensus        37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~-C~~~~~~l~~l~~~~~~-----~v~~~~vd~~   91 (140)
T 1v98_A           37 EADEKGFAQEVAGAPLTLVDFFAPWCGP-CRLVSPILEELARDHAG-----RLKVVKVNVD   91 (140)
T ss_dssp             ------------CCCEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TEEEEEEETT
T ss_pred             cCCHHHHHHHHHcCCCEEEEEECCCCHH-HHHHHHHHHHHHHHccC-----ceEEEEEECC
Confidence            3444444433233434999999999998 99999999999998753     5999999988

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.00  E-value=5.9e-09  Score=68.92  Aligned_cols=43  Identities=19%  Similarity=0.311  Sum_probs=37.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++|||+ |....|.++++.+++.+     ++.++.|+.|
T Consensus        18 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~v~~~   60 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGP-CRMIAPIIEELAKEYEG-----KVKVVKVNVD   60 (106)
Confidence            5789999999999998 99999999999887753     5888888877

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.58  E-value=4.9e-08  Score=75.56  Aligned_cols=42  Identities=5%  Similarity=-0.089  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|++|||+||++||++ |....|.|.++++++.      ++.|+.|..+
T Consensus       132 ~~k~VvV~Fya~wC~~-Ck~l~p~l~~La~~~~------~v~f~kVd~d  173 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKG-CDALNSSLICLAAEYP------MVKFCKIKAS  173 (245)
T ss_dssp             TTCEEEEEEECTTSTT-HHHHHHHHHHHHHHCT------TSEEEEEEHH
T ss_pred             CCCEEEEEEECCCChH-HHHHHHHHHHHHHHCC------CCEEEEEeCC
Confidence            4899999999999998 9999999999999864      5888888776

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.57  E-value=9.3e-08  Score=60.81  Aligned_cols=42  Identities=24%  Similarity=0.455  Sum_probs=37.2

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+++++||++|||+ |+...|.+.++.+++.+     ++.++.|++|.
T Consensus         3 ~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~vd~~~   44 (85)
T 1fo5_A            3 KVKIELFTSPMCPH-CPAAKRVVEEVANEMPD-----AVEVEYINVME   44 (85)
T ss_dssp             CEEEEEEECCCSSC-CCTHHHHHHHHHHHCSS-----SEEEEEEESSS
T ss_pred             ceEEEEEeCCCCCc-hHHHHHHHHHHHHHcCC-----ceEEEEEECCC
Confidence            57899999999998 99999999999988752     69999999884

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.57  E-value=4.3e-08  Score=67.49  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++|+|+||++||++ |+...|.|.++.+++.      ++.|+-|.+|
T Consensus        23 ~~~vvv~F~a~wc~~-C~~~~p~l~~la~~~~------~v~f~kvd~d   63 (118)
T 3evi_A           23 DVWVIIHLYRSSIPM-CLLVNQHLSLLARKFP------ETKFVKAIVN   63 (118)
T ss_dssp             TCEEEEEEECTTSHH-HHHHHHHHHHHHHHCT------TSEEEEEEGG
T ss_pred             CCeEEEEEeCCCChH-HHHHHHHHHHHHHHCC------CCEEEEEEhH
Confidence            459999999999998 9999999999999863      6899999887

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.53  E-value=9.1e-08  Score=80.33  Aligned_cols=62  Identities=10%  Similarity=0.064  Sum_probs=45.0

Q ss_pred             EEcCCCCeee--cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCC---CCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVK--SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPN---VPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~--l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~---~~~v~~v~Is~d  130 (183)
                      +...+++.+.  +..-.+|++||+||++||++ |+.+.|.+.++++++..+..   .+++.|+.|++|
T Consensus        25 V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~p-Ck~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d   91 (470)
T 3qcp_A           25 VVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGA-CRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA   91 (470)
T ss_dssp             EEECSCSCGGGTCTTGGGSCEEEEEECTTCHH-HHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT
T ss_pred             cEECCHHHHHHHHHhCCCCeEEEEEECCCCHH-HHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC
Confidence            4444444443  12223589999999999998 99999999999999874310   014899999888

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=2.6e-08  Score=68.80  Aligned_cols=50  Identities=12%  Similarity=0.216  Sum_probs=38.3

Q ss_pred             eeecCccCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         75 PVKSEDFLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        75 ~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+.+++.+||++||+||++||++ |+.+.|.+   .++.+.++.     ++.++.|..|
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~~~vd~~   71 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGP-CKRLSKVVFKDSLVADYFNR-----HFVNLKMDME   71 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTH-HHHHHHHGGGCHHHHHHHHH-----HSEEEEECSS
T ss_pred             HHHHHHhcCCeEEEEEECCCCcc-HHHHHHHhcCcHHHHHHHhc-----CeEEEEEecC
Confidence            45555567999999999999998 99999999   666665532     4666666655

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.51  E-value=2.7e-08  Score=63.38  Aligned_cols=40  Identities=20%  Similarity=0.340  Sum_probs=35.5

Q ss_pred             EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++++||++|||+ |+...|.+.++.+++.+     ++.++.|++|
T Consensus         3 ~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~vd~~   42 (85)
T 1nho_A            3 VNIEVFTSPTCPY-CPMAIEVVDEAKKEFGD-----KIDVEKIDIM   42 (85)
T ss_dssp             CCEEEESCSSSCC-STTHHHHHHHHHHHHCS-----SCCEEEECTT
T ss_pred             EEEEEEECCCCcc-hHHHHHHHHHHHHHhcC-----CeEEEEEECC
Confidence            4689999999998 99999999999998853     6889999887

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.3e-07  Score=75.16  Aligned_cols=44  Identities=16%  Similarity=0.281  Sum_probs=39.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .++++||+||++||++ |+.+.|.+.++++++.+     .+.++.|.+|.
T Consensus        34 ~~~~vlV~F~A~wC~~-C~~~~p~~~~la~~~~~-----~~~~~~v~~d~   77 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGH-CKKLSSTFRKAAKRLDG-----VVQVAAVNCDL   77 (298)
T ss_dssp             SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETTS
T ss_pred             CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHccC-----CcEEEEEEccC
Confidence            4789999999999998 99999999999998853     48899999884

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.50  E-value=5.6e-08  Score=82.83  Aligned_cols=60  Identities=10%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             EEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+++.+...-+ .||+++|+||++||++ |+.++|.+.++++++++.  ..++.++.|++|
T Consensus        14 V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~p-Ck~~~P~l~~la~~~~~~--~~~v~~~~VD~d   74 (519)
T 3t58_A           14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGH-AIAFAPTWKELANDVKDW--RPALNLAVLDCA   74 (519)
T ss_dssp             SEEECTTTHHHHHSSCSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHGGG--TTTEEEEEEETT
T ss_pred             cEECChHHHHHHHHhCCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhhCc--CCcEEEEEEECC
Confidence            44444444443222 4699999999999998 999999999999999753  236999999886

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.49  E-value=3e-07  Score=69.33  Aligned_cols=47  Identities=13%  Similarity=0.125  Sum_probs=38.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+.+.|.+.++++++.+++ .+++.++.|+.|
T Consensus       133 ~~~~~~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~-~~~v~~~~vd~~  179 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPY-CPLAVRMAHKFAIENTKAG-KGKILGDMVEAI  179 (226)
T ss_dssp             CSCEEEEEEECSSCTT-HHHHHHHHHHHHHHHHHTT-CCCEEEEEEEGG
T ss_pred             CCCcEEEEEeCCCCCc-cHHHHHHHHHHHHhccccc-CCcEEEEEEEcc
Confidence            3455599999999998 9999999999999886210 136899999887

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.49  E-value=6e-08  Score=68.66  Aligned_cols=43  Identities=5%  Similarity=0.126  Sum_probs=37.7

Q ss_pred             CCCEEEEEEEcCC--CCCCcHHHHHHHHHHHHHhhCCCCCCC-eeEEEEEeC
Q psy17592         82 LGKWALIYFGFTH--CPDICPDELEKMAAVVNKIDGQPNVPN-ITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~--C~~~C~~~~~~l~~l~~~~~~~~~~~~-v~~v~Is~d  130 (183)
                      .+++|||+||++|  |++ |+...|.|.++.+++.+     + +.|+-|++|
T Consensus        33 ~~~~vlVdF~a~~crCgp-Ck~iaPvleela~e~~g-----~~v~~~KVdvD   78 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPE-VSDNPVMIGELLHEFPD-----YTWQVAIADLE   78 (140)
T ss_dssp             TCSSEEEEECCCTTTCTT-TTHHHHHHHHHHTTCTT-----SCCEEEECCHH
T ss_pred             CCCCEEEEEeCCcccCCc-HHHHHhHHHHHHHHcCC-----CeEEEEEEECC
Confidence            5678999999999  998 99999999999998753     5 899888887

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.49  E-value=2.2e-08  Score=68.97  Aligned_cols=43  Identities=23%  Similarity=0.265  Sum_probs=38.2

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+||+++|+||++||++ |+...|.|.++.+++.      ++.++.|++|
T Consensus        34 ~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~------~v~~~~v~~~   76 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGP-CRFIAPVFAEYAKKFP------GAVFLKVDVD   76 (130)
T ss_dssp             TTTCBCBEECCSSSCSC-SSSSHHHHHHHHHHCT------TBCCEECCTT
T ss_pred             hcCCEEEEEEECCCChh-HHHHHHHHHHHHHHCC------CCEEEEEecc
Confidence            36899999999999998 9999999999998863      5888888887

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.48  E-value=3.6e-07  Score=70.42  Aligned_cols=49  Identities=16%  Similarity=0.151  Sum_probs=39.9

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++.|++++++||++|||+ |+...|.+.+++..+.++. .+++.+..|..+
T Consensus       135 ~~~~~~~vv~F~a~wC~~-C~~~~p~l~~la~~~~~~~-~~~v~~~~vd~~  183 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPY-CPYAVLLAHMFAYEAWKQG-NPVILSEAVEAY  183 (243)
T ss_dssp             HCCSCEEEEEEECSSCSS-HHHHHHHHHHHHHHHHHTT-CCCEEEEEEETT
T ss_pred             HcCCCcEEEEEECCCCCC-cHHHHHHHHHHHHHccccc-CCcEEEEEEECc
Confidence            456889999999999998 9999999999999874210 137888888877

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.44  E-value=4.2e-07  Score=61.79  Aligned_cols=54  Identities=11%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +++++|+|++||||+ |....|.++++.+. .      ++.++-|.+|   +..+.-.+.+++++
T Consensus        24 ~~~vvi~khatwCgp-c~~~~~~~e~~~~~-~------~v~~~~vdVd---e~r~~Sn~IA~~~~   77 (112)
T 3iv4_A           24 NKYVFVLKHSETCPI-SANAYDQFNKFLYE-R------DMDGYYLIVQ---QERDLSDYIAKKTN   77 (112)
T ss_dssp             CSEEEEEEECTTCHH-HHHHHHHHHHHHHH-H------TCCEEEEEGG---GGHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCcCHh-HHHHHHHHHHHhcc-C------CceEEEEEee---cCchhhHHHHHHhC
Confidence            799999999999997 99999999999874 2      6899999998   34443334444544

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.44  E-value=1.3e-09  Score=73.65  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=32.9

Q ss_pred             CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHh
Q psy17592         74 KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKI  113 (183)
Q Consensus        74 ~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~  113 (183)
                      +.+++++..||+++|+||++|||+ |+.+.|.+.++.+++
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~-C~~~~p~~~~~a~~~   41 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPH-CQDQKELFGAAFDQV   41 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHH-HHHHHHHHGGGGGGS
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHH-HHHHHHHHHHHHHhC
Confidence            345677778899999999999998 999999999887543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.43  E-value=2.9e-07  Score=69.90  Aligned_cols=46  Identities=13%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.+.++.+++..+  ..++.++.|..|
T Consensus       146 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~~~--~~~v~~~~vd~~  191 (241)
T 3idv_A          146 DADIILVEFYAPWCGH-CKKLAPEYEKAAKELSKR--SPPIPLAKVDAT  191 (241)
T ss_dssp             HCSEEEEEEECTTCTG-GGGTHHHHHHHHHHHHTS--SSCCCEEEEETT
T ss_pred             cCCeEEEEEECCCCHH-HHHhHHHHHHHHHHHhcc--CCcEEEEEEECC
Confidence            4789999999999998 999999999999999765  346889998887

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.43  E-value=5e-07  Score=68.29  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      +....||++|+.||++|||+ |+.+.|.|.++.+.        +++++.+.+
T Consensus        81 ~g~~~~k~~vv~F~d~~Cp~-C~~~~~~l~~l~~~--------~v~v~~~~~  123 (216)
T 1eej_A           81 YKAPQEKHVITVFTDITCGY-CHKLHEQMADYNAL--------GITVRYLAF  123 (216)
T ss_dssp             ECCTTCCEEEEEEECTTCHH-HHHHHTTHHHHHHT--------TEEEEEEEC
T ss_pred             ecCCCCCEEEEEEECCCCHH-HHHHHHHHHHHHhC--------CcEEEEEEC
Confidence            34446899999999999998 99999999988652        577777765

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.40  E-value=1.2e-07  Score=65.26  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             CCCEEEEEEEcCCCC--------------CCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCP--------------DICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~--------------~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +||+++|+||++||+              + |+...|.+.++.+++.+     ++.++.|++|.
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~-C~~~~p~~~~l~~~~~~-----~~~~~~vd~d~   77 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGP-CKMIAPILDEIADEYQG-----KLTVAKLNIDQ   77 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCC-CCTTHHHHTTC------------CEEEEEETTS
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCC-cHHHHHHHHHHHHHhcC-----CeEEEEEECCC
Confidence            589999999999999              9 99999999999887643     58999999884

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.39  E-value=1.2e-06  Score=54.54  Aligned_cols=37  Identities=16%  Similarity=0.086  Sum_probs=30.7

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS  128 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is  128 (183)
                      ..|+||++||++ |+...|.+.++.+++..     ++.++.|+
T Consensus         2 ~~v~f~a~wC~~-C~~~~~~l~~~~~~~~~-----~~~~~~v~   38 (77)
T 1ilo_A            2 MKIQIYGTGCAN-CQMLEKNAREAVKELGI-----DAEFEKIK   38 (77)
T ss_dssp             EEEEEECSSSST-THHHHHHHHHHHHHTTC-----CEEEEEEC
T ss_pred             cEEEEEcCCChh-HHHHHHHHHHHHHHcCC-----ceEEEEec
Confidence            368999999998 99999999999988742     57776664

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.38  E-value=2.4e-07  Score=70.30  Aligned_cols=42  Identities=5%  Similarity=-0.063  Sum_probs=36.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|++|||+||++||++ |....|.|.++.+++.      ++.|+.|..|
T Consensus       119 ~~k~vvV~F~a~wC~~-C~~l~p~l~~la~~~~------~v~f~~vd~~  160 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRG-CDALNSSLECLAAEYP------MVKFCKIRAS  160 (217)
T ss_dssp             TTCEEEEEEECTTSTT-HHHHHHHHHHHHTTCT------TSEEEEEEHH
T ss_pred             CCcEEEEEEECCCCcc-HHHHHHHHHHHHHHCC------CeEEEEEECC
Confidence            4699999999999998 9999999999988763      6888888765

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.37  E-value=1.4e-07  Score=79.14  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=39.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+++|+||++||++ |+.++|.+.++++.+++.   .++.++.|..+
T Consensus       369 ~~k~vlv~f~a~wC~~-C~~~~p~~~~l~~~~~~~---~~v~~~~id~~  413 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGH-CKNLEPKYKELGEKLSKD---PNIVIAKMDAT  413 (481)
T ss_dssp             TTCEEEEEEECTTBHH-HHHHHHHHHHHHHHTTTC---SSEEEEEEETT
T ss_pred             CCCcEEEEEecCcChh-HHHhhHHHHHHHHHhccC---CCEEEEEEECC
Confidence            4899999999999998 999999999999998753   26777777766

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.36  E-value=2.1e-07  Score=68.25  Aligned_cols=61  Identities=13%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             CeeecCccCCCEEEEEEEcCCCCCCcHHHHHH---HHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         74 KPVKSEDFLGKWALIYFGFTHCPDICPDELEK---MAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        74 ~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~---l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      +.+.....+||+|||+|||+||++ |+...+.   ..++.+.+.+     ++.++-|..|   +.++..+.|.
T Consensus        30 ea~~~A~~~~KpVlvdF~A~WC~~-Ck~m~~~~f~~~~va~~l~~-----~fv~ikVD~d---e~~~l~~~y~   93 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIGYSTCHW-CHMMAHESFEDEEVAGLMNE-----AFVSIKVDRE---ERPDIDNIYM   93 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHH-HHHHHHHTTTCHHHHHHHHH-----HCEEEEEETT---TCHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEecccchhHh-hccccccccCCHHHHHHHHh-----cCceeeeCCc---ccCcHHHHHH
Confidence            344444457999999999999998 9997772   2345454432     3555555554   3455555553

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.33  E-value=1.2e-06  Score=63.53  Aligned_cols=48  Identities=15%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             eeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         75 PVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        75 ~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      ...+.+-.++++|+.||..|||+ |....|.|.++.+++.      +++++.+.+
T Consensus        14 ~~~~G~~~a~v~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~------~v~~~~~~~   61 (175)
T 3gyk_A           14 APVLGNPEGDVTVVEFFDYNCPY-CRRAMAEVQGLVDADP------NVRLVYREW   61 (175)
T ss_dssp             SCEEECTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TEEEEEEEC
T ss_pred             CCCcCCCCCCEEEEEEECCCCcc-HHHHHHHHHHHHHhCC------CEEEEEEeC
Confidence            34555667899999999999998 9999999999988753      466666654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.30  E-value=1.4e-06  Score=65.83  Aligned_cols=42  Identities=21%  Similarity=0.142  Sum_probs=36.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++++||++||++ |+...|.+.++..++.      ++.++.|..|
T Consensus       135 ~~~~~~v~F~a~wC~~-C~~~~~~~~~~~~~~~------~v~~~~vd~~  176 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGY-CPSAAVMAWDFALAND------YITSKVIDAS  176 (229)
T ss_dssp             CSCEEEEEEECTTCTT-HHHHHHHHHHHHHHCT------TEEEEEEEGG
T ss_pred             CCCeEEEEEECCCCcc-hHHHHHHHHHHHHHCC------CeEEEEEECC
Confidence            3556689999999998 9999999999998862      6899999887

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.28  E-value=4.4e-07  Score=74.20  Aligned_cols=61  Identities=10%  Similarity=-0.006  Sum_probs=44.0

Q ss_pred             EcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCC-CCCeeEEEEEeC
Q psy17592         69 VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPN-VPNITPIFISVD  130 (183)
Q Consensus        69 ~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~-~~~v~~v~Is~d  130 (183)
                      .+.+++.+...--.+++++|+||++||++ |+...|.+.++++++++... .+++.++.|..|
T Consensus         8 ~~l~~~~f~~~~~~~~~vlV~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~   69 (382)
T 2r2j_A            8 TSLDTENIDEILNNADVALVNFYADWCRF-SQMLHPIFEEASDVIKEEFPNENQVVFARVDCD   69 (382)
T ss_dssp             CBCCTTTHHHHHHHCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTCC---CCEEEEEEETT
T ss_pred             EECCHHHHHHHHhcCCeEEEEEECCCCHH-HHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC
Confidence            34444444321125799999999999998 99999999999999864210 125888888877

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.28  E-value=1.1e-07  Score=68.27  Aligned_cols=42  Identities=10%  Similarity=0.072  Sum_probs=32.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHH--HhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVN--KIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~--~~~~~~~~~~v~~v~Is~d  130 (183)
                      .||+|||+||++||++ |+...|.+.+..+  ++.      +..|+.|.+|
T Consensus        43 ~~KpVlV~F~A~WC~~-Ck~m~p~~~~~~~~~~~~------~~~fv~V~vD   86 (151)
T 3ph9_A           43 SKKPLMVIHHLEDCQY-SQALKKVFAQNEEIQEMA------QNKFIMLNLM   86 (151)
T ss_dssp             HTCCEEEEECCTTCHH-HHHHHHHHHHCHHHHHHH------HHTCEEEEES
T ss_pred             cCCcEEEEEECCCCHh-HHHHHHHHhcCHHHHHHh------hcCeEEEEec
Confidence            5899999999999998 9999999886422  111      2357788887

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.25  E-value=1.2e-06  Score=77.66  Aligned_cols=46  Identities=11%  Similarity=-0.004  Sum_probs=40.5

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++.|++++|+||++||++ |+.++|.+.++++++++     ++.|+.|+.|
T Consensus       451 ~~~~~~~vlv~F~a~wC~~-c~~~~p~~~~~a~~~~~-----~v~~~~vd~~  496 (780)
T 3apo_A          451 PASDKEPWLVDFFAPWSPP-SRALLPELRKASTLLYG-----QLKVGTLDCT  496 (780)
T ss_dssp             CTTCCSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             HHcCCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhcC-----CeEEEEEeCC
Confidence            3447899999999999998 99999999999999853     5889998877

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.25  E-value=9.1e-07  Score=74.71  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+||++||++ |+...|.+.++.+.+++.    ++.++.|..|
T Consensus        30 ~~~~~lv~F~a~wC~~-C~~~~p~~~~~a~~~~~~----~v~~~~vd~~   73 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGH-CKNMAPEYVKAAETLVEK----NITLAQIDCT   73 (504)
T ss_dssp             TCSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----TCEEEEEETT
T ss_pred             cCCeEEEEEECCCCHH-HHHhHHHHHHHHHHhccC----CeEEEEEECC
Confidence            4799999999999998 999999999999998753    6889998887

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.21  E-value=2.3e-06  Score=62.95  Aligned_cols=56  Identities=23%  Similarity=0.376  Sum_probs=42.2

Q ss_pred             CCCEEEEEEEc-------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         82 LGKWALIYFGF-------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        82 ~gk~vll~f~~-------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      ++.+|||.|||       .||++ |+...|.+.++.+++..+...+++.|.-|.+|   +.++...+
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgp-Ck~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d---~~~~la~~   98 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQL-CHDFEKTYHAVADVIRSQAPQSLNLFFTVDVN---EVPQLVKD   98 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHH-HHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT---TCHHHHHH
T ss_pred             CCCcEEEEEeCCCCCCCCCCChh-HHHHHHHHHHHHHHhhhccCCCCEEEEEEECc---cCHHHHHH
Confidence            45689999999       49998 99999999999999862100136888888888   45554443

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.21  E-value=1.4e-06  Score=70.45  Aligned_cols=45  Identities=13%  Similarity=0.115  Sum_probs=38.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++||++ |+...|.+.++.+.+++.   .++.++.|..+
T Consensus       266 ~~k~~lv~f~a~wC~~-C~~~~p~~~~la~~~~~~---~~v~~~~vd~~  310 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGH-CKQLAPIWDKLGETYKDH---ENIVIAKMDST  310 (361)
T ss_dssp             TTCEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTC---SSEEEEEEETT
T ss_pred             CCCcEEEEEecCcCHh-HHHHHHHHHHHHHHhccC---CcEEEEEEECC
Confidence            5899999999999998 999999999999998754   25776666655

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.20  E-value=1.4e-06  Score=58.86  Aligned_cols=53  Identities=13%  Similarity=0.103  Sum_probs=34.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +++++++ ||++|||+ |+...|.|.++..         .+.++-|..+  .+..+......+.++
T Consensus        18 ~~~~vv~-f~a~~C~~-C~~~~~~l~~~~~---------~~~~v~v~~~--~~~~~~~~~l~~~~~   70 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGY-CNRVKQLLTQVGA---------SYKVVELDEL--SDGSQLQSALAHWTG   70 (116)
T ss_dssp             TSSSEEE-EECTTCHH-HHHHHHHHHHHTC---------CCEEEEGGGS--TTHHHHHHHHHHHHS
T ss_pred             cCCCEEE-EECCCChh-HHHHHHHHHHcCC---------CeEEEEccCC--CChHHHHHHHHHHhC
Confidence            4566666 99999998 9999999888732         3444444444  232333344556665

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.18  E-value=4.4e-07  Score=76.65  Aligned_cols=60  Identities=8%  Similarity=0.059  Sum_probs=42.3

Q ss_pred             EEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         68 LVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        68 l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+|+.+...-. .+|++||+||++||++ |+...|.+.++.+++...  ..++.++.|..+
T Consensus       360 v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~~~--~~~v~~~~vd~~  420 (504)
T 2b5e_A          360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGH-CKRLAPTYQELADTYANA--TSDVLIAKLDHT  420 (504)
T ss_dssp             EEEECTTTHHHHHHCTTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHHHH--CSSCEEEEEEGG
T ss_pred             ceecccccHHHhhccCCCCEEEEEECCCChh-HHHHhHHHHHHHHHhhcc--CCcEEEEEecCC
Confidence            44444544432212 5899999999999998 999999999999988621  125666666554

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.13  E-value=2.9e-06  Score=68.41  Aligned_cols=43  Identities=7%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHH-------HHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEK-------MAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~-------l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++++|+|||+||+  |+.++|.       +.++.+.+++.    ++.++.|..|
T Consensus        27 ~~~~~lV~F~a~wC~--c~~~~p~~~~~~~~~~~~a~~~~~~----~v~~~~Vd~~   76 (350)
T 1sji_A           27 KYDVLCLYYHESVSS--DKVAQKQFQLKEIVLELVAQVLEHK----DIGFVMVDAK   76 (350)
T ss_dssp             TCSEEEEEEECCSCS--SSTTSHHHHHHHHHHHHHHHHGGGS----SEEEEEEETT
T ss_pred             hCCeEEEEEECCCCc--chhhCchhhhhhHHHHHHHHHHhhc----CcEEEEEeCC
Confidence            478999999999998  8888888       88888887653    6899888887

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.13  E-value=2e-05  Score=58.14  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|+++|+.||..|||+ |....|.|.++.+++.+     ++.+..+.++
T Consensus        24 ~~~~~vv~f~d~~Cp~-C~~~~~~l~~l~~~~~~-----~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPH-CAAIEPMVEDWAKTAPQ-----DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHH-HHHHHHHHHHHHHTCCT-----TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCcc-HHHhhHHHHHHHHHCCC-----CeEEEEEecc
Confidence            5899999999999998 99999999999887643     5888888876

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.12  E-value=2.6e-06  Score=75.56  Aligned_cols=43  Identities=7%  Similarity=0.009  Sum_probs=38.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|++++|+||++||++ |+.++|.+.+++++++.     ++.++.|..|
T Consensus       674 ~~~~v~v~F~a~wC~~-C~~~~p~~~~la~~~~~-----~~~~~~vd~~  716 (780)
T 3apo_A          674 GKTHWVVDFYAPWSGP-SQNFAPEFELLARMIKG-----KVRAGKVDCQ  716 (780)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TCEEEEEETT
T ss_pred             CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CceEEEEECC
Confidence            4789999999999998 99999999999999853     5889999887

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.11  E-value=3.1e-06  Score=70.95  Aligned_cols=43  Identities=12%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +|++++|+||++||++ |+...|.+.++++.+++     .+.++.|..|
T Consensus        20 ~~~~~lv~F~a~wC~~-C~~~~p~~~~~a~~~~~-----~v~~~~vd~~   62 (481)
T 3f8u_A           20 SAGLMLVEFFAPWCGH-AKRLAPEYEAAATRLKG-----IVPLAKVDCT   62 (481)
T ss_dssp             SSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCCEEEEETT
T ss_pred             CCCeEEEEEECCCCHH-HHHhHHHHHHHHHHhcC-----ceEEEEEECC
Confidence            3489999999999998 99999999999999864     3788888877

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.98  E-value=1.7e-06  Score=61.24  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=30.3

Q ss_pred             CCEEEEEEEcCC--CCCCcHHHHHHHHHHHHHhhCCCCCCCee--EEEEEeC
Q psy17592         83 GKWALIYFGFTH--CPDICPDELEKMAAVVNKIDGQPNVPNIT--PIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~--C~~~C~~~~~~l~~l~~~~~~~~~~~~v~--~v~Is~d  130 (183)
                      ++.++|+||++|  |++ |+...|.|.++.+++ +     ++.  ++.|++|
T Consensus        34 ~~~~vv~f~~~~~~C~~-C~~l~P~l~~la~~~-~-----~v~~~~~~Vd~d   78 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPE-VSDNPVMIAELLREF-P-----QFDWQVAVADLE   78 (142)
T ss_dssp             CCSEEEEECCCSCC-----CCHHHHHHHHHHTC-T-----TSCCEEEEECHH
T ss_pred             CCCEEEEEECCCCCCcc-HHHHHHHHHHHHHHh-c-----ccceeEEEEECC
Confidence            345788999888  998 999999999999987 3     577  8888776

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=97.86  E-value=4.7e-06  Score=52.97  Aligned_cols=37  Identities=19%  Similarity=0.474  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++.|+++|||+ |....+.|.++..++.      ++.+..|+++
T Consensus         3 v~~f~~~~C~~-C~~~~~~l~~l~~~~~------~i~~~~vdi~   39 (85)
T 1ego_A            3 TVIFGRSGCPY-CVRAKDLAEKLSNERD------DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTH-HHHHHHHHHHHHHHHS------SCEEEEECHH
T ss_pred             EEEEeCCCCCC-HHHHHHHHHHHHhcCC------CceEEEEecc
Confidence            67799999998 9999999999987653      5888888776

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.84  E-value=1.7e-05  Score=50.04  Aligned_cols=45  Identities=13%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      ++.||++|||+ |+...+.|.++.+++       ++.+..+.+|...+..+.+
T Consensus         4 ~~~f~~~~C~~-C~~~~~~l~~~~~~~-------~~~~~~~~v~~~~~~~~~~   48 (80)
T 2k8s_A            4 KAIFYHAGCPV-CVSAEQAVANAIDPS-------KYTVEIVHLGTDKARIAEA   48 (80)
T ss_dssp             EEEEEECSCHH-HHHHHHHHHHHSCTT-------TEEEEEEETTTCSSTHHHH
T ss_pred             eEEEeCCCCCc-hHHHHHHHHHHHHhc-------CCeEEEEEecCChhhHHHH
Confidence            67789999998 999999998876542       4566666666322244443

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=97.83  E-value=1.1e-05  Score=54.37  Aligned_cols=54  Identities=17%  Similarity=0.307  Sum_probs=40.8

Q ss_pred             EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592         85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL  153 (183)
Q Consensus        85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l  153 (183)
                      .+|+.||++|||+ |....+.|.++.+++       ++.+.-|.+|   ++++...+    ++...|.+
T Consensus        30 ~~vv~y~~~~C~~-C~~a~~~L~~l~~e~-------~i~~~~vDId---~d~~l~~~----ygv~VP~l   83 (107)
T 2fgx_A           30 RKLVVYGREGCHL-CEEMIASLRVLQKKS-------WFELEVINID---GNEHLTRL----YNDRVPVL   83 (107)
T ss_dssp             CCEEEEECSSCHH-HHHHHHHHHHHHHHS-------CCCCEEEETT---TCHHHHHH----STTSCSEE
T ss_pred             cEEEEEeCCCChh-HHHHHHHHHHHHHhc-------CCeEEEEECC---CCHHHHHH----hCCCCceE
Confidence            5689999999998 999999999998874       4778888888   45554443    45444444

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.83  E-value=3.6e-05  Score=57.76  Aligned_cols=44  Identities=16%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             ccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..+++++|++||++ ||++ |....|.+.++.+.      .+++.++.|..|
T Consensus        19 ~~~~~v~lv~f~~~~~C~~-C~~~~~~~~~la~~------~~~v~~~~vd~~   63 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQY-CDQLKQLVQELSEL------TDKLSYEIVDFD   63 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTT-HHHHHHHHHHHHTT------CTTEEEEEEETT
T ss_pred             hcCCCeEEEEEecCCCCch-hHHHHHHHHHHHhh------CCceEEEEEeCC
Confidence            35667889999999 9998 99999999998753      236888888877

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.83  E-value=5.4e-05  Score=55.62  Aligned_cols=43  Identities=14%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|+++|+.||..|||+ |....|.|.++.+++.+     ++.+..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~-----~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPH-CYAFEPTIVPWSEKLPA-----DVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHH-HHHHHHHHHHHHHTCCT-----TEEEEEEECC
T ss_pred             CCCCEEEEEECCCChh-HHHhhHHHHHHHHhCCC-----CeEEEEEehh
Confidence            5899999999999998 99999999999887643     5777766653

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.82  E-value=2.5e-05  Score=57.45  Aligned_cols=43  Identities=14%  Similarity=0.046  Sum_probs=36.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++|+.||..|||+ |....+.|.++.+++..     ++.+..+.+.
T Consensus        21 ~~~~~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~-----~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVH-CHHFDPLLLKLGKALPS-----DAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCC-TTSSCHHHHHHHHHSCT-----TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChh-HHHHhHHHHHHHHHCCC-----ceEEEEeccc
Confidence            5799999999999998 99999999999988642     5777777653

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.79  E-value=6.8e-05  Score=60.90  Aligned_cols=44  Identities=2%  Similarity=-0.038  Sum_probs=34.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHH------HHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDEL------EKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~------~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||+|||+||++ |...-      |.+.++.+.++..    ++.+..|..+
T Consensus        29 ~~~~vlV~FyApWC~~-~~~~~~l~~~~p~~e~~a~~~~~~----~v~~~~Vd~~   78 (367)
T 3us3_A           29 KYEVLALLYHEPPEDD-KASQRQFEMEELILELAAQVLEDK----GVGFGLVDSE   78 (367)
T ss_dssp             HCSEEEEEEECCCCSS-HHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEETT
T ss_pred             hCCeEEEEEECCCchh-HHHhhhhccccHHHHHHHHHhhcC----CceEEEEeCc
Confidence            4689999999999998 84433      5778888887643    6888888877

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.77  E-value=1.1e-05  Score=56.13  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=36.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++++.||++ |++ |+...|.|.++.++++.     ++.|+.|++|
T Consensus        22 ~~~pv~v~f~a~-~~~-c~~~~p~l~~~A~~~~g-----k~~f~~vd~d   63 (133)
T 2djk_A           22 AGIPLAYIFAET-AEE-RKELSDKLKPIAEAQRG-----VINFGTIDAK   63 (133)
T ss_dssp             TTSCEEEEECSC-SSS-HHHHHHHHHHHHHSSTT-----TSEEEEECTT
T ss_pred             CCCCEEEEEecC-hhh-HHHHHHHHHHHHHHhCC-----eEEEEEEchH
Confidence            357899999999 787 99999999999998753     5888888887

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.73  E-value=4.2e-05  Score=57.45  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=31.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      .+|++|+.||..|||+ |+...|.|.++.+.        ++++..+.+
T Consensus        85 ~~k~~vv~F~d~~Cp~-C~~~~~~l~~~~~~--------~v~v~~~~~  123 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHY-CHLLHQQLKEYNDL--------GITVRYLAF  123 (211)
T ss_dssp             TCSEEEEEEECTTCHH-HHHHHTTHHHHHHT--------TEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHh-HHHHHHHHHHHHhC--------CcEEEEEEC
Confidence            4789999999999998 99999999986541        477766644

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.68  E-value=2.6e-05  Score=51.64  Aligned_cols=50  Identities=14%  Similarity=0.216  Sum_probs=35.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      ..+++|+.|+++|||+ |....+.|.++.         .++.+.-|.+|. .+.++..++|
T Consensus        14 ~~~~~v~~f~~~~C~~-C~~~~~~L~~l~---------~~i~~~~vdi~~-~~~~el~~~~   63 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPL-CDEAKEVLQPYK---------DRFILQEVDITL-PENSTWYERY   63 (100)
T ss_dssp             CCCCEEEEEECSSCHH-HHHHHHHTSTTS---------SSSEEEEEETTS-STTHHHHHHS
T ss_pred             CCCCEEEEEeCCCCcc-hHHHHHHHHHhh---------hCCeEEEEECCC-cchHHHHHHH
Confidence            3467888899999998 999888887653         258888888872 2344444444

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=97.60  E-value=6.8e-05  Score=48.46  Aligned_cols=42  Identities=21%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      |+.||++||++ |....|.|.++..+        .  +.-|++|   ++++...+|
T Consensus         3 vv~f~a~~C~~-C~~~~~~L~~~~~~--------~--~~~vdid---~~~~l~~~~   44 (87)
T 1ttz_A            3 LTLYQRDDCHL-CDQAVEALAQARAG--------A--FFSVFID---DDAALESAY   44 (87)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHTTCC--------C--EEEEECT---TCHHHHHHH
T ss_pred             EEEEECCCCch-HHHHHHHHHHHHHh--------h--eEEEECC---CCHHHHHHh
Confidence            67899999998 99998888776321        1  4567777   456655554

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=97.55  E-value=0.00018  Score=53.52  Aligned_cols=88  Identities=14%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             eeecCcc--CCCEEEEEEE-cCCCCCCcHHH-HHHHHHHHHHh-hCCCCCCCe-eEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592         75 PVKSEDF--LGKWALIYFG-FTHCPDICPDE-LEKMAAVVNKI-DGQPNVPNI-TPIFISVDPERDTPELVGKYVKEFSP  148 (183)
Q Consensus        75 ~v~l~~~--~gk~vll~f~-~t~C~~~C~~~-~~~l~~l~~~~-~~~~~~~~v-~~v~Is~dp~~d~~~~~~~~~~~~~~  148 (183)
                      ++++++.  +||.|||++. +..=| .|..+ +|...+.++++ +.+    ++ +|+.|++|    ++-.+++|.+.++.
T Consensus        59 ~v~ls~~~~k~KkVVLf~vPGAFTP-tCS~~hlPgf~~~~d~~~k~k----Gvd~I~ciSVN----D~FVm~AW~k~~~~  129 (199)
T 4h86_A           59 TVEWSKLISENKKVIITGAPAAFSP-TCTVSHIPGYINYLDELVKEK----EVDQVIVVTVD----NPFANQAWAKSLGV  129 (199)
T ss_dssp             EEEHHHHHHHCSEEEEEECSCTTCH-HHHHTTHHHHHHHHHHHHHHS----CCCEEEEEESS----CHHHHHHHHHHTTC
T ss_pred             eeEHHHHhcCCCeEEEEEeCCCcCC-cCChhhChHHHHHHHHHHHhc----CCcEEEEEEcC----CHHHHHHHHHHhcc
Confidence            4666664  7998877765 44455 59885 88888877654 444    34 78999998    68999999999864


Q ss_pred             ----CeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        149 ----KFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       149 ----~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                          .+.++.+...+   +++++|+.....
T Consensus       130 ~~~~~i~~laD~~~e---ftkalGl~~~~~  156 (199)
T 4h86_A          130 KDTTHIKFASDPGCA---FTKSIGFELAVG  156 (199)
T ss_dssp             CCCSSEEEEECGGGH---HHHHTTCEEEEE
T ss_pred             cccccccccCCcchH---HHHhcCceeecC
Confidence                47777765544   889999876554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=97.54  E-value=0.00016  Score=51.74  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .||++||+|++.||+. |+..-...   .++.+.+++     ++.++-+.+|    ++ .-.++.+.++
T Consensus        41 ~~K~vlvd~~a~wC~~-C~~me~~vf~d~~V~~~l~~-----~fv~v~~d~~----~~-~~~~l~~~y~   98 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFA-CQCLNRDVWSNEAVKNIIRE-----HFIFWQVYHD----SE-EGQRYIQFYK   98 (153)
T ss_dssp             HTCEEEEEEECSCTTT-HHHHHHHTTTCHHHHHHHHH-----TEEEEEEESS----SH-HHHHHHHHHT
T ss_pred             cCCeEEEEEECCCCHh-HHHHHHHhcCCHHHHHHHHc-----CeEEEEEecC----CH-hHHHHHHHcC
Confidence            4899999999999998 99875433   333333321     4555555543    33 3346667765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.53  E-value=0.00017  Score=61.29  Aligned_cols=51  Identities=14%  Similarity=0.214  Sum_probs=39.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .++..++.||++|||+ |+...|.++++...+.      ++.+..|..|   +.++...+|
T Consensus       116 ~~~~~i~~f~a~~C~~-C~~~~~~l~~~a~~~~------~v~~~~vd~~---~~~~~~~~~  166 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHN-CPDVVQALNLMAVLNP------RIKHTAIDGG---TFQNEITER  166 (521)
T ss_dssp             CSCEEEEEEECTTCSS-HHHHHHHHHHHHHHCT------TEEEEEEETT---TCHHHHHHT
T ss_pred             CCCcceEEEECCCCcC-cHHHHHHHHHHHhHcC------ceEEEEEech---hhHHHHHHh
Confidence            4677899999999999 9999999999987642      6888888877   444444333

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.43  E-value=0.00019  Score=52.98  Aligned_cols=43  Identities=16%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++|+.|+..|||+ |....|.|.++.+++.+     ++.+.-+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~-C~~~~~~l~~~~~~~~~-----~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPH-CAHLEPVLSKHAKSFKD-----DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHH-HHHHHHHHHHHHTTCCT-----TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChh-HHHHHHHHHHHHHHCCC-----CeEEEEecCC
Confidence            4799999999999998 99999999999877643     5777777775

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.43  E-value=3.3e-05  Score=52.76  Aligned_cols=46  Identities=13%  Similarity=0.092  Sum_probs=30.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +...+||+||+.||++ |+...+.+...++....   ...+.++-|.+|.
T Consensus        17 ~~~~~LV~F~A~wC~~-Ck~~~~~i~~~~~~~a~---~~~~~l~~vdv~~   62 (116)
T 3dml_A           17 KAELRLLMFEQPGCLY-CARWDAEIAPQYPLTDE---GRAAPVQRLQMRD   62 (116)
T ss_dssp             --CEEEEEEECTTCHH-HHHHHHHTTTTGGGSHH---HHHSCEEEEETTS
T ss_pred             cCCCEEEEEECCCCHH-HHHHHHHHHhhHHHhhh---cccceEEEEECCC
Confidence            4578999999999998 99987765544332110   0136778888774

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.35  E-value=3.6e-05  Score=57.36  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=36.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .++++||.||+.|||+ |....|.+   .++.+++.+     ++.|.-+.++-
T Consensus       112 ~~~~~vveFf~~~C~~-C~~~~p~~~~~~~l~~~~~~-----~v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPH-CYQFEEVLHISDNVKKKLPE-----GVKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHH-HHHHHHTSCHHHHHTTSSCT-----TCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChh-HHHhCcccccHHHHHHHCCC-----CCEEEEeccCc
Confidence            4789999999999998 99999998   888777642     68888887763

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.35  E-value=0.00035  Score=50.33  Aligned_cols=51  Identities=16%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+..-.++++|+.|+..+||. |....+.+.++.+++.+.   ++|+++...+.
T Consensus        20 ~~~G~~~a~v~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~~~---~~v~~~~~~~~   70 (175)
T 1z6m_A           20 LHIGESNAPVKMIEFINVRCPY-CRKWFEESEELLAQSVKS---GKVERIIKLFD   70 (175)
T ss_dssp             EEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHHT---TSEEEEEEECC
T ss_pred             cccCCCCCCeEEEEEECCCCcc-hHHHHHHHHHHHHHHhhC---CcEEEEEEeCC
Confidence            4555567899999999999998 999999999998887322   26888887664

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.32  E-value=0.00065  Score=49.59  Aligned_cols=43  Identities=16%  Similarity=0.205  Sum_probs=36.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++|+.||..+||. |....+.|.++.+++..     ++.+..+.+.
T Consensus        24 ~a~v~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~-----~v~~~~~p~~   66 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPH-CAHFDSKLQAWGARQAK-----DVRFTLVPAV   66 (193)
T ss_dssp             TTCEEEEEEECTTCHH-HHHHHHHHHHHHHTSCT-----TEEEEEEECC
T ss_pred             CCCeEEEEEECCCChh-HhhhhHHHHHHHHhcCC-----ceEEEEeCcc
Confidence            5788999999999998 99999999999887642     5787777663

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.22  E-value=0.00015  Score=53.41  Aligned_cols=44  Identities=18%  Similarity=0.180  Sum_probs=34.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .++++||.|+..|||+ |....|.+   .++.+++.     ++++++.+.++-
T Consensus        13 ~~~~~vvef~d~~Cp~-C~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~   59 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPP-CYAFSQTMGVDQAIRHVLP-----QGSRMVKYHVSL   59 (189)
T ss_dssp             TTCCSEEEEECTTCHH-HHHHHHTSCHHHHHHTTCC-----TTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChh-HHHHhHhccchHHHHHhCC-----CCCEEEEEechh
Confidence            4588999999999998 99999986   56666553     258888887653

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.22  E-value=0.0004  Score=43.38  Aligned_cols=45  Identities=18%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++.||++|||+ |+...+.|.+.           ++.+..+.+|   ++++ +.+.+++++
T Consensus         3 v~~f~~~~C~~-C~~~~~~l~~~-----------~i~~~~vdi~---~~~~-~~~~~~~~g   47 (81)
T 1h75_A            3 ITIYTRNDCVQ-CHATKRAMENR-----------GFDFEMINVD---RVPE-AAEALRAQG   47 (81)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEETT---TCHH-HHHHHHHTT
T ss_pred             EEEEcCCCChh-HHHHHHHHHHC-----------CCCeEEEECC---CCHH-HHHHHHHhC
Confidence            56799999998 99988887753           4667778887   2333 334444455

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.19  E-value=0.00044  Score=51.90  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=34.9

Q ss_pred             cCCCEEEEEE----EcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYF----GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f----~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++.++|+.|    |+.||++ |...+|.+.++++++.+.   +.+.+..|..|
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~-c~~~~~~~~~~a~~~~~~---~~v~~~~vd~~   68 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQT-AEELLKETVEVIGEAVGQ---DKIKLDIYSPF   68 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGH-HHHHHHHHHHHHHHHHCT---TTEEEEEECTT
T ss_pred             ccCCeEEEEEccCCCCcccHH-HHHHHHHHHHHHhccCCC---CceEEEEecCc
Confidence            3455566666    5899998 999999999998887542   26888888766

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.14  E-value=0.00076  Score=51.54  Aligned_cols=46  Identities=13%  Similarity=0.150  Sum_probs=36.0

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      +.+..-.++++|+.|+..|||+ |+...+.|.++.+.       ++|+++.+.+
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~-C~~~~~~l~~~~~~-------g~v~v~~~~~  135 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPY-CKQFWQQARPWVDS-------GKVQLRTLLV  135 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHT-------TSEEEEEEEC
T ss_pred             ceECCCCCCeEEEEEECCCChh-HHHHHHHHHHHHhC-------CcEEEEEEEC
Confidence            4444446789999999999998 99999999887663       1577777665

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.09  E-value=0.00064  Score=44.69  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAV  109 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l  109 (183)
                      ++.|+++|||+ |+...+.|.++
T Consensus        14 v~~f~~~~C~~-C~~~~~~L~~~   35 (105)
T 1kte_A           14 VVVFIKPTCPF-CRKTQELLSQL   35 (105)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHS
T ss_pred             EEEEEcCCCHh-HHHHHHHHHHc
Confidence            56689999998 99988888765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.98  E-value=0.0014  Score=45.26  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++| |+++|||+ |+...+.|.++           ++.+..|.+|...+.++....+.+.++
T Consensus        29 vvv-f~~~~Cp~-C~~~~~~L~~~-----------~i~~~~vdid~~~~~~~~~~~l~~~~g   77 (130)
T 2cq9_A           29 VVI-FSKTSCSY-CTMAKKLFHDM-----------NVNYKVVELDLLEYGNQFQDALYKMTG   77 (130)
T ss_dssp             EEE-EECSSCSH-HHHHHHHHHHH-----------TCCCEEEETTTSTTHHHHHHHHHHHHS
T ss_pred             EEE-EEcCCChH-HHHHHHHHHHc-----------CCCcEEEECcCCcCcHHHHHHHHHHhC
Confidence            444 99999998 99988888775           345556777632223454445555565

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=96.96  E-value=0.0016  Score=50.24  Aligned_cols=41  Identities=10%  Similarity=0.085  Sum_probs=34.3

Q ss_pred             CCCEEEEEEE--cCCCCCCcHHHHHHHHHHHHHhhC-CCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFG--FTHCPDICPDELEKMAAVVNKIDG-QPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~--~t~C~~~C~~~~~~l~~l~~~~~~-~~~~~~v~~v~Is~d  130 (183)
                      .++++||.||  |+||+     ..|.+.++.+++.. .   +++.|.-|.+|
T Consensus        32 ~~~~vlV~Fy~~ApWCg-----l~P~~e~lA~~~~~~~---~~v~~akVD~d   75 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE-----KHEAFTAFSKSAHKAT---KDLLIATVGVK   75 (248)
T ss_dssp             TSSEEEEEEEESSCCSH-----HHHHHHHHHHHHHHHC---SSEEEEEEEEC
T ss_pred             cCCCEEEEEECCCCCCc-----cHHHHHHHHHHHhccC---CCeEEEEEECC
Confidence            4689999999  99998     78999999998864 2   26899999988

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.88  E-value=0.00048  Score=46.36  Aligned_cols=50  Identities=14%  Similarity=0.250  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCee---EEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT---PIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~---~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .++.|+++|||+ |+...+.|.++           ++.   +..|.+|...+..+......+.+|
T Consensus        20 ~vv~f~~~~Cp~-C~~~~~~L~~~-----------~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g   72 (114)
T 2hze_A           20 KVTIFVKYTCPF-CRNALDILNKF-----------SFKRGAYEIVDIKEFKPENELRDYFEQITG   72 (114)
T ss_dssp             CEEEEECTTCHH-HHHHHHHHTTS-----------CBCTTSEEEEEGGGSSSHHHHHHHHHHHHS
T ss_pred             CEEEEEeCCChh-HHHHHHHHHHc-----------CCCcCceEEEEccCCCChHHHHHHHHHHhC
Confidence            466789999998 99887776543           344   666777632222344444555555

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=96.81  E-value=0.0024  Score=48.75  Aligned_cols=45  Identities=11%  Similarity=0.092  Sum_probs=34.7

Q ss_pred             CCEEEEEEEcCC--CCCCcHHHHHHHHHHHHHhhCCCCCCC--eeEEEEEeC
Q psy17592         83 GKWALIYFGFTH--CPDICPDELEKMAAVVNKIDGQPNVPN--ITPIFISVD  130 (183)
Q Consensus        83 gk~vll~f~~t~--C~~~C~~~~~~l~~l~~~~~~~~~~~~--v~~v~Is~d  130 (183)
                      +++++|.||+.|  |++ |....+.+.++.+...+.  .+.  +.|+.+..|
T Consensus        25 ~~pv~v~~~~~~~~c~~-c~~~~~~l~ela~~~~~~--~~~~~v~~~~vd~d   73 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCET-CEDTLRLMKLFEEESPTR--NGGKLLKLNVYYRE   73 (243)
T ss_dssp             CSCEEEEEEECSSSCTT-HHHHHHHHHHHHHHSCEE--TTEESEEEEEEETT
T ss_pred             CCCEEEEEEeCCCCCCc-hHHHHHHHHHHHHhccCC--CCCceeEEEEecCC
Confidence            478999999999  998 999999999998874211  112  777777766

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=96.76  E-value=0.0031  Score=48.29  Aligned_cols=41  Identities=7%  Similarity=0.167  Sum_probs=33.8

Q ss_pred             CCCEEEEEEEc--CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGF--THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~--t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++++||.||+  +||+     ..|.+.++.+.+...   +++.|..|.+|
T Consensus        21 ~~~~vlV~FyA~~pWCg-----l~P~~e~lA~~~~~~---~~v~~akVDvd   63 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE-----KQDEFKRLAENSASS---DDLLVAEVGIS   63 (240)
T ss_dssp             GCSEEEEEECCSSCCSH-----HHHHHHHHHHHHTTC---TTEEEEEECCC
T ss_pred             CCCCEEEEEeCCCCCCc-----chHHHHHHHHHhcCC---CCeEEEEEeCC
Confidence            46899999999  9998     789999999988642   36888888876

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.73  E-value=0.0017  Score=39.59  Aligned_cols=45  Identities=11%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++.|+++|||+ |+...+.|.++           ++.+..+.+|.   .++ ..++++.++
T Consensus         3 i~~y~~~~C~~-C~~~~~~l~~~-----------~i~~~~~di~~---~~~-~~~~~~~~~   47 (75)
T 1r7h_A            3 ITLYTKPACVQ-CTATKKALDRA-----------GLAYNTVDISL---DDE-ARDYVMALG   47 (75)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEETTT---CHH-HHHHHHHTT
T ss_pred             EEEEeCCCChH-HHHHHHHHHHc-----------CCCcEEEECCC---CHH-HHHHHHHcC
Confidence            56789999998 99988888754           46666777772   333 334445565

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.67  E-value=0.002  Score=45.53  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .++| |+++|||+ |+...+.|.++           ++.+..+.+|...+.++......+.++
T Consensus        50 ~Vvv-f~~~~Cp~-C~~~k~~L~~~-----------~i~~~~vdId~~~~~~~~~~~L~~~~g   99 (146)
T 2ht9_A           50 CVVI-FSKTSCSY-CTMAKKLFHDM-----------NVNYKVVELDLLEYGNQFQDALYKMTG   99 (146)
T ss_dssp             SEEE-EECTTCHH-HHHHHHHHHHH-----------TCCCEEEEGGGCTTHHHHHHHHHHHHS
T ss_pred             CEEE-EECCCChh-HHHHHHHHHHc-----------CCCeEEEECccCcCCHHHHHHHHHHhC
Confidence            3444 99999998 99988888775           344455666632223444445555665

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.62  E-value=0.0012  Score=43.40  Aligned_cols=47  Identities=13%  Similarity=0.195  Sum_probs=31.5

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHH
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE  145 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~  145 (183)
                      +.-++.|+++|||+ |......|.++           ++.+..+.+|.   .++....+.+.
T Consensus        15 ~~~v~vy~~~~Cp~-C~~ak~~L~~~-----------~i~y~~idI~~---~~~~~~~l~~~   61 (99)
T 3qmx_A           15 SAKIEIYTWSTCPF-CMRALALLKRK-----------GVEFQEYCIDG---DNEAREAMAAR   61 (99)
T ss_dssp             CCCEEEEECTTCHH-HHHHHHHHHHH-----------TCCCEEEECTT---CHHHHHHHHHH
T ss_pred             CCCEEEEEcCCChh-HHHHHHHHHHC-----------CCCCEEEEcCC---CHHHHHHHHHH
Confidence            33456689999998 99988888775           46666777773   34444444443

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=96.57  E-value=0.0013  Score=48.48  Aligned_cols=81  Identities=15%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCC-CCCcHHHHHHH--HHHhCC-------
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDP-ERDTPELVGKY--VKEFSP-------  148 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp-~~d~~~~~~~~--~~~~~~-------  148 (183)
                      .++++|+.|+..+||+ |....|.|   .++.+++.+     ++.++.+.+.- ...+....+.+  ++..|.       
T Consensus        20 ~~~~~vvef~d~~Cp~-C~~~~~~l~~~~~l~~~~~~-----~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g~~~~~~~~   93 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPH-CYQFEEVLHVSDNVKKKLPE-----GTKMTKYHVEFLGPLGKELTQAWAVAMALGVEDKVTVP   93 (191)
T ss_dssp             CSSSCEEEEECTTCHH-HHHHHHTSCHHHHHHHHSCT-----TCCEEEEECSSSSTTHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCeEEEEECCCChh-HHHhChhccchHHHHHhCCC-----CcEEEEEecccccccCHHHHHHHHHHHHcCcHHHHHHH
Confidence            4689999999999998 99999987   688888753     46666665542 12222222221  222221       


Q ss_pred             -------CeEEecCCHHHHHHHHhhcCee
Q psy17592        149 -------KFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       149 -------~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                             .+.  ..+.+.+.++++..|+.
T Consensus        94 lf~a~~~~~~--~~~~~~L~~~a~~~Gld  120 (191)
T 3l9s_A           94 LFEAVQKTQT--VQSAADIRKVFVDAGVK  120 (191)
T ss_dssp             HHHHHHTSCC--CSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCC--CCCHHHHHHHHHHcCCC
Confidence                   121  34667778888888864

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.55  E-value=0.0015  Score=44.28  Aligned_cols=52  Identities=10%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++.|+++|||+ |+.. .+.|.++    ..    +++.+..+.+|...+.++......+.++
T Consensus        27 Vvvf~~~~Cp~-C~~alk~~L~~~----~~----~~i~~~~vdid~~~~~~~~~~~l~~~~g   79 (118)
T 3c1r_A           27 IFVASKTYCPY-CHAALNTLFEKL----KV----PRSKVLVLQLNDMKEGADIQAALYEING   79 (118)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHTTS----CC----CGGGEEEEEGGGSTTHHHHHHHHHHHHS
T ss_pred             EEEEEcCCCcC-HHHHHHHHHHHc----CC----CCCCeEEEECccCCChHHHHHHHHHHhC
Confidence            44599999998 9987 5544332    11    1377788888743222344444444555

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.50  E-value=0.0032  Score=39.05  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++.|+.+|||+ |+...+.|.+.           ++.+..+.+|.   .++...++.+.++
T Consensus         3 i~~y~~~~C~~-C~~~~~~l~~~-----------~i~~~~~~i~~---~~~~~~~~~~~~~   48 (82)
T 1fov_A            3 VEIYTKETCPY-CHRAKALLSSK-----------GVSFQELPIDG---NAAKREEMIKRSG   48 (82)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHH-----------TCCCEEEECTT---CSHHHHHHHHHHS
T ss_pred             EEEEECCCChh-HHHHHHHHHHC-----------CCCcEEEECCC---CHHHHHHHHHHhC
Confidence            45688999998 99988877764           45566677773   2344445555554

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.47  E-value=0.0081  Score=38.08  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ++.|+++|||+ |+...+.|.+.           ++.+..+.+|     .+...++.+.+
T Consensus         8 v~~y~~~~C~~-C~~~~~~L~~~-----------~i~~~~vdv~-----~~~~~~l~~~~   50 (89)
T 2klx_A            8 IILYTRPNCPY-CKRARDLLDKK-----------GVKYTDIDAS-----TSLRQEMVQRA   50 (89)
T ss_dssp             EEEESCSCCTT-THHHHHHHHHH-----------TCCEEEECSC-----HHHHHHHHHHH
T ss_pred             EEEEECCCChh-HHHHHHHHHHc-----------CCCcEEEECC-----HHHHHHHHHHh
Confidence            56689999998 99988877764           3555566665     34444555555

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.44  E-value=0.0024  Score=42.63  Aligned_cols=48  Identities=13%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ++.|+.+|||+ |....+.|.++           ++.+-.+.+|....+.+.+++++++.
T Consensus        21 v~vy~~~~Cp~-C~~~~~~L~~~-----------~i~~~~~di~~~~~~~~~~~~~l~~~   68 (113)
T 3rhb_A           21 VVIYSKTWCSY-CTEVKTLFKRL-----------GVQPLVVELDQLGPQGPQLQKVLERL   68 (113)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEEGGGSTTHHHHHHHHHHHH
T ss_pred             EEEEECCCChh-HHHHHHHHHHc-----------CCCCeEEEeecCCCChHHHHHHHHHH
Confidence            45589999998 99988777664           34455566663212334555655554

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=96.39  E-value=0.0041  Score=39.66  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++.|+.+|||+ |+...+.|.+.           ++.+..+.+|   ++++...++.+.++
T Consensus         8 v~ly~~~~C~~-C~~~~~~L~~~-----------~i~~~~~di~---~~~~~~~~l~~~~~   53 (92)
T 2khp_A            8 VIIYTRPGCPY-CARAKALLARK-----------GAEFNEIDAS---ATPELRAEMQERSG   53 (92)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEEST---TSHHHHHHHHHHHT
T ss_pred             EEEEECCCChh-HHHHHHHHHHc-----------CCCcEEEECC---CCHHHHHHHHHHhC
Confidence            56789999998 99877777653           4666677777   34455555655554

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=96.34  E-value=0.004  Score=49.84  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.++|.|++.||++ |....+.+.++++++++     .+.++.|..|
T Consensus       136 ~~~~v~F~~~~~~~-~~~~~~~~~~~A~~~~~-----~i~f~~vd~~  176 (361)
T 3uem_A          136 KTHILLFLPKSVSD-YDGKLSNFKTAAESFKG-----KILFIFIDSD  176 (361)
T ss_dssp             CEEEEEECCSSSSS-HHHHHHHHHHHHGGGTT-----TCEEEEECTT
T ss_pred             CcEEEEEEeCCchh-HHHHHHHHHHHHHHccC-----ceEEEEecCC
Confidence            56789999999998 99999999999999864     4777776655

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=96.30  E-value=0.00032  Score=55.36  Aligned_cols=36  Identities=25%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHH
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNK  112 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~  112 (183)
                      +.+.+..++..++.||++|||+ |+...|.++++.++
T Consensus       190 ~~la~~l~~~~vV~F~A~WC~~-Ck~l~p~le~lA~~  225 (291)
T 3kp9_A          190 VGLAAHLRQIGGTMYGAYWCPH-CQDQKELFGAAFDQ  225 (291)
T ss_dssp             HHHHHHHHHTTCEEEECTTCHH-HHHHHHHHGGGGGG
T ss_pred             HHHHHHhCCCCEEEEECCCCHH-HHHHHHHHHHHHHH
Confidence            3444433344478999999998 99999999988654

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=96.27  E-value=0.0057  Score=40.13  Aligned_cols=23  Identities=17%  Similarity=0.549  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHH
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAV  109 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l  109 (183)
                      .++.|+++|||+ |....+.|.++
T Consensus        23 ~v~ly~~~~Cp~-C~~ak~~L~~~   45 (103)
T 3nzn_A           23 KVIMYGLSTCVW-CKKTKKLLTDL   45 (103)
T ss_dssp             CEEEEECSSCHH-HHHHHHHHHHH
T ss_pred             eEEEEcCCCCch-HHHHHHHHHHc
Confidence            355689999998 99988888775

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.16  E-value=0.0012  Score=48.29  Aligned_cols=30  Identities=10%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHh
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKI  113 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~  113 (183)
                      ++++||.|+..|||+ |....|.+.++.+++
T Consensus        22 ~~~~vvef~d~~Cp~-C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGH-CRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHH-HHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChh-HHHhhHHHHHHHHHh
Confidence            689999999999998 999999999999887

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=95.93  E-value=0.012  Score=38.73  Aligned_cols=47  Identities=11%  Similarity=0.065  Sum_probs=30.5

Q ss_pred             EEEEEEEc-----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         85 WALIYFGF-----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        85 ~vll~f~~-----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .++| |+.     +|||+ |....+.|.++           ++.+..+.+|   ++++....+.+..|
T Consensus        18 ~vvv-f~~g~~~~~~C~~-C~~~~~~L~~~-----------~i~~~~vdi~---~~~~~~~~l~~~~g   69 (105)
T 2yan_A           18 SVML-FMKGNKQEAKCGF-SKQILEILNST-----------GVEYETFDIL---EDEEVRQGLKAYSN   69 (105)
T ss_dssp             SEEE-EESBCSSSBCTTH-HHHHHHHHHHH-----------TCCCEEEEGG---GCHHHHHHHHHHHT
T ss_pred             CEEE-EEecCCCCCCCcc-HHHHHHHHHHC-----------CCCeEEEECC---CCHHHHHHHHHHHC
Confidence            4555 555     99998 99988888765           4667777777   23444444444444

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.88  E-value=0.0097  Score=39.50  Aligned_cols=50  Identities=8%  Similarity=0.026  Sum_probs=32.0

Q ss_pred             CCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         83 GKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        83 gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ...|+|++.+    +|||+ |......|.++           ++.+..|.++.   +++....+.+..|
T Consensus        14 ~~~vvvy~~g~~~~~~Cp~-C~~ak~~L~~~-----------~i~~~~vdi~~---~~~~~~~l~~~~g   67 (109)
T 1wik_A           14 KASVMLFMKGNKQEAKCGF-SKQILEILNST-----------GVEYETFDILE---DEEVRQGLKTFSN   67 (109)
T ss_dssp             TSSEEEEESSTTTCCCSST-HHHHHHHHHHT-----------CSCEEEEESSS---CHHHHHHHHHHHS
T ss_pred             cCCEEEEEecCCCCCCCch-HHHHHHHHHHc-----------CCCeEEEECCC---CHHHHHHHHHHhC
Confidence            3346665554    89998 99987777654           56777888872   3444444444444

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=95.59  E-value=0.018  Score=41.63  Aligned_cols=44  Identities=16%  Similarity=0.144  Sum_probs=36.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH-HHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM-AAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l-~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+++++|.||..+||. |....+.+ .++.+++..     .+++..+.++.
T Consensus        16 ~~~~~~ief~d~~CP~-C~~~~~~l~~~l~~~~~~-----~v~~~~~~l~~   60 (195)
T 3c7m_A           16 NADKTLIKVFSYACPF-CYKYDKAVTGPVSEKVKD-----IVAFTPFHLET   60 (195)
T ss_dssp             SCTTEEEEEECTTCHH-HHHHHHHTHHHHHHHTTT-----TCEEEEEECTT
T ss_pred             CCCcEEEEEEeCcCcc-hhhCcHHHHHHHHHhCCC-----ceEEEEEecCc
Confidence            4677889999999998 99999999 888887643     57887877765

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=95.58  E-value=0.014  Score=41.72  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=29.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG  115 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~  115 (183)
                      .++++|+.|....||. |....+.+.++.+++.+
T Consensus        20 ~~~~~vvEf~dy~Cp~-C~~~~~~~~~l~~~~~~   52 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPH-CNTFEPIIAQLKQQLPE   52 (184)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHTSCT
T ss_pred             CCCCEEEEEECCCCHh-HHHHhHHHHHHHhhcCC
Confidence            4688999999999998 99999999999988754

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=95.54  E-value=0.024  Score=37.86  Aligned_cols=45  Identities=16%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH-HHhC
Q psy17592         90 FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV-KEFS  147 (183)
Q Consensus        90 f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~-~~~~  147 (183)
                      |+.+|||. |......|.++           ++.+-.+.+|...+ .+.+++.+ +..|
T Consensus        22 y~~~~Cp~-C~~ak~~L~~~-----------~i~~~~~dvd~~~~-~~~~~~~l~~~~g   67 (114)
T 3h8q_A           22 FSKSYCPH-STRVKELFSSL-----------GVECNVLELDQVDD-GARVQEVLSEITN   67 (114)
T ss_dssp             EECTTCHH-HHHHHHHHHHT-----------TCCCEEEETTTSTT-HHHHHHHHHHHHS
T ss_pred             EEcCCCCc-HHHHHHHHHHc-----------CCCcEEEEecCCCC-hHHHHHHHHHHhC
Confidence            88999998 99877777664           45556677764223 34454444 3444

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=95.49  E-value=0.028  Score=36.32  Aligned_cols=44  Identities=11%  Similarity=0.089  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE  145 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~  145 (183)
                      |+-|..+|||. |...-..|.+.           ++.+..+.+|   ++++..+.+.+.
T Consensus         6 I~vYs~~~Cp~-C~~aK~~L~~~-----------gi~y~~idi~---~d~~~~~~~~~~   49 (92)
T 2lqo_A            6 LTIYTTSWCGY-CLRLKTALTAN-----------RIAYDEVDIE---HNRAAAEFVGSV   49 (92)
T ss_dssp             EEEEECTTCSS-HHHHHHHHHHT-----------TCCCEEEETT---TCHHHHHHHHHH
T ss_pred             EEEEcCCCCHh-HHHHHHHHHhc-----------CCceEEEEcC---CCHHHHHHHHHH
Confidence            55678999998 99976666542           6777788887   355555555443

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.20  E-value=0.011  Score=40.57  Aligned_cols=52  Identities=13%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++.|+.+|||+ |... .+.|.++    ..    +.+.+..|.+|...+..+......+..|
T Consensus        39 Vvvy~~~~Cp~-C~~a~k~~L~~~----~~----~~i~~~~vdvd~~~~~~~~~~~L~~~~g   91 (129)
T 3ctg_A           39 VFVAAKTYCPY-CKATLSTLFQEL----NV----PKSKALVLELDEMSNGSEIQDALEEISG   91 (129)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHTTS----CC----CGGGEEEEEGGGSTTHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCc-hHHHHHHHHHhc----Cc----cCCCcEEEEccccCCHHHHHHHHHHHhC
Confidence            46678999998 9987 5555432    11    1256666666632222333334444455

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.07  E-value=0.015  Score=36.47  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHH
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAV  109 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l  109 (183)
                      .++.|+.+|||. |+.....|.++
T Consensus         5 ~v~ly~~~~Cp~-C~~~~~~L~~~   27 (89)
T 3msz_A            5 KVKIYTRNGCPY-CVWAKQWFEEN   27 (89)
T ss_dssp             CEEEEECTTCHH-HHHHHHHHHHT
T ss_pred             EEEEEEcCCChh-HHHHHHHHHHc
Confidence            367789999998 99977766553

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=94.98  E-value=0.051  Score=36.86  Aligned_cols=55  Identities=9%  Similarity=0.321  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL  153 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l  153 (183)
                      +..|..++|+. |+.....|.+-           ++.+-.+.+.....+.+.++++++..|.++.-+
T Consensus         5 i~iY~~~~C~~-c~ka~~~L~~~-----------gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l   59 (120)
T 3fz4_A            5 LTFYEYPKCST-CRRAKAELDDL-----------AWDYDAIDIKKNPPAASLIRNWLENSGLELKKF   59 (120)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHH-----------TCCEEEEETTTSCCCHHHHHHHHHHSCCCGGGG
T ss_pred             EEEEeCCCChH-HHHHHHHHHHc-----------CCceEEEEeccCchhHHHHHHHHHHcCCCHHHH
Confidence            44567999997 99988877753           566666666544578999999999998655433

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=94.93  E-value=0.028  Score=38.11  Aligned_cols=52  Identities=8%  Similarity=0.013  Sum_probs=39.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      +..|..++|+. |+.....|.+.           ++.+-.+.++....+.+.++++++..+.++
T Consensus         2 i~iY~~~~C~~-c~ka~~~L~~~-----------gi~~~~~di~~~~~~~~el~~~l~~~~~~~   53 (120)
T 3l78_A            2 VTLFLSPSCTS-CRKARAWLNRH-----------DVVFQEHNIMTSPLSRDELLKILSYTENGT   53 (120)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHT-----------TCCEEEEETTTSCCCHHHHHHHHHHCSSTH
T ss_pred             EEEEeCCCCHH-HHHHHHHHHHc-----------CCCeEEEecccCCCcHHHHHHHHhhcCCCH
Confidence            34577899998 99987777652           566777777654578999999999876554

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=94.91  E-value=0.024  Score=35.95  Aligned_cols=22  Identities=27%  Similarity=0.810  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAV  109 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l  109 (183)
                      ++.|+.+|||+ |+.....|.++
T Consensus        14 v~ly~~~~Cp~-C~~~~~~L~~~   35 (92)
T 3ic4_A           14 VLMYGLSTCPH-CKRTLEFLKRE   35 (92)
T ss_dssp             SEEEECTTCHH-HHHHHHHHHHH
T ss_pred             EEEEECCCChH-HHHHHHHHHHc
Confidence            45688999998 99988877765

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=94.54  E-value=0.04  Score=37.94  Aligned_cols=52  Identities=8%  Similarity=0.100  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF  150 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~  150 (183)
                      +..|+.++||. |......|.+.           ++.+-.+.++....+.+.++++++..+.++
T Consensus         3 i~lY~~~~C~~-C~ka~~~L~~~-----------gi~y~~~di~~~~~~~~el~~~l~~~~~~~   54 (132)
T 1z3e_A            3 VTLYTSPSCTS-CRKARAWLEEH-----------EIPFVERNIFSEPLSIDEIKQILRMTEDGT   54 (132)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCEEEEETTTSCCCHHHHHHHHHTCSSCG
T ss_pred             EEEEeCCCChH-HHHHHHHHHHc-----------CCceEEEEccCCCccHHHHHHHHHHcCCCH
Confidence            44577999997 99987777763           566666777644567889999988665544

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=94.18  E-value=0.048  Score=36.98  Aligned_cols=55  Identities=11%  Similarity=0.175  Sum_probs=39.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL  153 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l  153 (183)
                      +..|..++|+. |+.....|.+-           ++.+-.+.+.....+.+.++++++..|.++..+
T Consensus         6 i~iY~~p~C~~-c~ka~~~L~~~-----------gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l   60 (120)
T 3gkx_A            6 TLFLQYPACST-CQKAKKWLIEN-----------NIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKF   60 (120)
T ss_dssp             CEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEETTTTCCCHHHHHHHHHHHTSCGGGG
T ss_pred             EEEEECCCChH-HHHHHHHHHHc-----------CCceEEEecccCcCCHHHHHHHHHHcCCCHHHe
Confidence            44567999997 99988777652           455556666544578999999999998655443

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=94.17  E-value=0.03  Score=39.42  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS  128 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is  128 (183)
                      .|+++|+.|...+||. |+...+.|.++          ++++++.+.
T Consensus        13 ~a~~~vv~f~D~~Cp~-C~~~~~~l~~l----------~~v~v~~~~   48 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPF-CKRLEHEFEKM----------TDVTVYSFM   48 (147)
T ss_dssp             TCCEEEEEEECTTCHH-HHHHHHHHTTC----------CSEEEEEEE
T ss_pred             CCCEEEEEEECCCChh-HHHHHHHHhhc----------CceEEEEEE
Confidence            5789999999999998 99998887643          257777664

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=93.83  E-value=0.081  Score=39.00  Aligned_cols=48  Identities=15%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHH-HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKM-AAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l-~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..-.++++|+.|....||. |....+.+ .++.++|.+.   ++|+++...+-
T Consensus        25 G~~~a~vtvvef~D~~CP~-C~~~~~~~~~~l~~~~~~~---g~v~~~~~~~p   73 (202)
T 3gha_A           25 GKDDAPVTVVEFGDYKCPS-CKVFNSDIFPKIQKDFIDK---GDVKFSFVNVM   73 (202)
T ss_dssp             SCTTCSEEEEEEECTTCHH-HHHHHHHTHHHHHHHTTTT---TSEEEEEEECC
T ss_pred             cCCCCCEEEEEEECCCChh-HHHHHHHhhHHHHHHhccC---CeEEEEEEecC
Confidence            3345789999999999998 99988877 5666667543   26888888663

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=93.07  E-value=0.046  Score=42.53  Aligned_cols=39  Identities=18%  Similarity=0.347  Sum_probs=31.6

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      |+.+|+.|+-..||+ |+...+.|.++.+..       .|+++.+.+
T Consensus       147 gk~~I~vFtDp~CPY-Ckkl~~~l~~~l~~~-------~Vr~i~~Pi  185 (273)
T 3tdg_A          147 KDKILYIVSDPMCPH-CQKELTKLRDHLKEN-------TVRMVVVGW  185 (273)
T ss_dssp             TTCEEEEEECTTCHH-HHHHHHTHHHHHHHC-------EEEEEECCC
T ss_pred             CCeEEEEEECcCChh-HHHHHHHHHHHhhCC-------cEEEEEeec
Confidence            678999999999998 999999999766542       577766554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=93.04  E-value=0.13  Score=37.03  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=33.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHH-HHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKM-AAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l-~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      .++++|+.|....||. |....+.+ .++.+++.+.   ++++++...+
T Consensus        10 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~l~~~~~~~---~~v~~~~~~~   54 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPY-CKELDEKVMPKLRKNYIDN---HKVEYQFVNL   54 (186)
T ss_dssp             -CCCEEEEEECTTCHH-HHHHHHHHHHHHHHHTTTT---TSSEEEEEEC
T ss_pred             CCCeEEEEEECCCChh-HHHHHHHHHHHHHHHhccC---CeEEEEEEec
Confidence            4678899999999998 99999998 4677777543   2577777655

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=93.00  E-value=0.072  Score=35.63  Aligned_cols=49  Identities=10%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.-|..++||. |+.....|.+.           ++.+-.+.++....+.+.+++++++.|
T Consensus         2 i~iY~~~~C~~-C~kak~~L~~~-----------gi~~~~~di~~~~~~~~~l~~~~~~~g   50 (114)
T 1rw1_A            2 YVLYGIKACDT-MKKARTWLDEH-----------KVAYDFHDYKAVGIDREHLRRWCAEHG   50 (114)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHT-----------TCCEEEEEHHHHCCCHHHHHHHHHHHC
T ss_pred             EEEEECCCChH-HHHHHHHHHHC-----------CCceEEEeecCCCCCHHHHHHHHHhCC
Confidence            34567899998 99987777662           456656665432357799999998876

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=92.92  E-value=0.1  Score=32.78  Aligned_cols=49  Identities=16%  Similarity=0.419  Sum_probs=29.1

Q ss_pred             EEEEEcC----CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC--CcHHHHHHHHHHhC
Q psy17592         87 LIYFGFT----HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER--DTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t----~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~--d~~~~~~~~~~~~~  147 (183)
                      ++-|+.+    |||. |......|.+.           ++.+-.+.++...  ++++...++.+..|
T Consensus         2 v~iY~~~~~~~~Cp~-C~~ak~~L~~~-----------gi~y~~idI~~~~~~~~~~~~~~l~~~~g   56 (87)
T 1aba_A            2 FKVYGYDSNIHKCGP-CDNAKRLLTVK-----------KQPFEFINIMPEKGVFDDEKIAELLTKLG   56 (87)
T ss_dssp             EEEEECCTTTSCCHH-HHHHHHHHHHT-----------TCCEEEEESCSBTTBCCHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCcCcc-HHHHHHHHHHc-----------CCCEEEEEeeccccccCHHHHHHHHHHhC
Confidence            3456789    9998 99877666653           4566666666211  23444444444444

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=92.68  E-value=0.34  Score=35.75  Aligned_cols=49  Identities=12%  Similarity=0.053  Sum_probs=37.6

Q ss_pred             ecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHH-HhhCCCCCCCeeEEEEEe
Q psy17592         77 KSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVN-KIDGQPNVPNITPIFISV  129 (183)
Q Consensus        77 ~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~-~~~~~~~~~~v~~v~Is~  129 (183)
                      .+..-.++++|+.|....||. |....+.+....+ ++-+.   ++|+++...+
T Consensus         9 ~~G~~~a~vtivef~D~~Cp~-C~~~~~~~~~~l~~~~i~~---g~v~~v~r~~   58 (205)
T 3gmf_A            9 LLGNPAAKLRLVEFVSYTCPH-CSHFEIESEGQLKIGMVQP---GKGAIEVRNF   58 (205)
T ss_dssp             EESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTTT---TSEEEEEEEC
T ss_pred             eecCCCCCeEEEEEECCCCHH-HHHHHHHHHHHHHHHhccC---CeEEEEEEeC
Confidence            334446789999999999998 9999988866555 66433   3799888877

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=92.61  E-value=0.13  Score=37.32  Aligned_cols=43  Identities=16%  Similarity=0.131  Sum_probs=35.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      .++++|+.|....||. |....+.+.++.+++.    .++|+++.-.+
T Consensus        13 ~a~vtiv~f~D~~Cp~-C~~~~~~~~~~l~~~~----~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPF-SVKAFFKLDDLLAQAG----EDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHH-HHHHHTTHHHHHHHHC----TTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHh-HHHHHHHHHHHHHHhC----CCCEEEEEEEc
Confidence            4688999999999998 9999999988877752    23688887765

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=92.56  E-value=0.041  Score=38.21  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=23.8

Q ss_pred             EEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         85 WALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        85 ~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .|+|+..+    +|||. |......|.++           ++.+..|.++
T Consensus        36 ~Vvvy~ks~~~~~~Cp~-C~~ak~~L~~~-----------gv~y~~vdI~   73 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGF-SAQAVQALAAC-----------GERFAYVDIL   73 (135)
T ss_dssp             SEEEEESBCSSSBSSHH-HHHHHHHHHTT-----------CSCCEEEEGG
T ss_pred             CEEEEEEecCCCCCCcc-HHHHHHHHHHc-----------CCceEEEECC
Confidence            46666655    79998 99876666543           5667777776

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=92.52  E-value=0.11  Score=35.08  Aligned_cols=49  Identities=14%  Similarity=0.257  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.-|..++|+. |+.....|.+.           ++.+-.+.++.+..+.+.+++++++.|
T Consensus         7 i~iY~~~~C~~-C~ka~~~L~~~-----------gi~y~~~di~~~~~~~~~l~~~~~~~g   55 (120)
T 2kok_A            7 VTIYGIKNCDT-MKKARIWLEDH-----------GIDYTFHDYKKEGLDAETLDRFLKTVP   55 (120)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHH-----------TCCEEEEEHHHHCCCHHHHHHHHHHSC
T ss_pred             EEEEECCCChH-HHHHHHHHHHc-----------CCcEEEEeeeCCCCCHHHHHHHHHHcC
Confidence            44567899998 99988887764           455555655422356799999998877

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=92.48  E-value=0.17  Score=37.97  Aligned_cols=49  Identities=14%  Similarity=0.124  Sum_probs=36.9

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHH-HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKM-AAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l-~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +..-.++++|+.|....||. |....+.+ .++.+++.+.   ++|+++...+-
T Consensus        34 ~G~~~A~vtIvef~Dy~CP~-C~~~~~~~~~~l~~~~~~~---g~V~~v~~~~p   83 (226)
T 3f4s_A           34 LGDPKAPILMIEYASLTCYH-CSLFHRNVFPKIKEKYIDT---GKMLYIFRHFP   83 (226)
T ss_dssp             ESCTTCSEEEEEEECTTCHH-HHHHHHHTHHHHHHHHTTT---TSEEEEEEECC
T ss_pred             cCCCCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHHcccC---CeEEEEEEeCC
Confidence            33445789999999999998 99998864 6787777543   26888877653

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=91.80  E-value=0.44  Score=30.15  Aligned_cols=46  Identities=7%  Similarity=0.028  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCCc------HHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDIC------PDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C------~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++-|..++||. |      ......|.+    .       ++.+..+.++   .+++......+..|
T Consensus         4 v~ly~~~~C~~-c~~~~~~~~ak~~L~~----~-------~i~~~~~di~---~~~~~~~~l~~~~g   55 (93)
T 1t1v_A            4 LRVYSTSVTGS-REIKSQQSEVTRILDG----K-------RIQYQLVDIS---QDNALRDEMRTLAG   55 (93)
T ss_dssp             EEEEECSSCSC-HHHHHHHHHHHHHHHH----T-------TCCCEEEETT---SCHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCC-chhhHHHHHHHHHHHH----C-------CCceEEEECC---CCHHHHHHHHHHhC
Confidence            34467899998 9      454333332    1       5677777777   23343333433444

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=91.47  E-value=0.11  Score=35.29  Aligned_cols=50  Identities=10%  Similarity=0.202  Sum_probs=37.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP  148 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~  148 (183)
                      +..|..++|+. |+.....|.+-           ++.+-.+.+.....+.+.++.+++..|.
T Consensus         7 i~iY~~p~C~~-c~ka~~~L~~~-----------gi~~~~~di~~~~~~~~eL~~~l~~~g~   56 (121)
T 3rdw_A            7 VTIYHNPRCSK-SRETLALVEQQ-----------GITPQVVLYLETPPSVDKLKELLQQLGF   56 (121)
T ss_dssp             CEEECCTTCHH-HHHHHHHHHTT-----------TCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred             EEEEECCCCHH-HHHHHHHHHHc-----------CCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence            34567899997 99977776542           5566666665445689999999999986

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=90.98  E-value=0.1  Score=36.36  Aligned_cols=50  Identities=10%  Similarity=0.106  Sum_probs=37.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      ..|..++|+. |+.....|.+-           ++.+-.+.+.....+.+.++++.+..|.+
T Consensus         5 tiY~~p~C~~-crkak~~L~~~-----------gi~~~~idi~~~~~~~~eL~~~~~~~g~p   54 (141)
T 1s3c_A            5 TIYHNPASGT-SRNTLEMIRNS-----------GTEPTIILYLENPPSRDELVKLIADMGIS   54 (141)
T ss_dssp             EEECCTTCHH-HHHHHHHHHHT-----------TCCCEEECTTTSCCCHHHHHHHHHHHTSC
T ss_pred             EEEECCCChH-HHHHHHHHHHc-----------CCCEEEEECCCCCccHHHHHHHhcccCCC
Confidence            3467899998 99987777652           56666676664446889999999988753

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=90.62  E-value=0.13  Score=34.03  Aligned_cols=37  Identities=5%  Similarity=0.057  Sum_probs=24.0

Q ss_pred             CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +...|+|+--.    +|||. |......|.+.           ++.+-.+.++
T Consensus        16 ~~~~Vvvy~k~t~~~p~Cp~-C~~ak~~L~~~-----------gi~~~~~dI~   56 (109)
T 3ipz_A           16 NSEKVVLFMKGTRDFPMCGF-SNTVVQILKNL-----------NVPFEDVNIL   56 (109)
T ss_dssp             TSSSEEEEESBCSSSBSSHH-HHHHHHHHHHT-----------TCCCEEEEGG
T ss_pred             ccCCEEEEEecCCCCCCChh-HHHHHHHHHHc-----------CCCcEEEECC
Confidence            34455555444    39998 99977776663           4566667776

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=90.57  E-value=0.13  Score=34.24  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=24.3

Q ss_pred             CCCEEEEEEE----cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFG----FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~----~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +...|+|+.-    ++|||. |......|.+.           ++.+..+.++
T Consensus        14 ~~~~Vvlf~kg~~~~~~Cp~-C~~ak~~L~~~-----------gi~y~~~di~   54 (111)
T 3zyw_A           14 HAAPCMLFMKGTPQEPRCGF-SKQMVEILHKH-----------NIQFSSFDIF   54 (111)
T ss_dssp             TSSSEEEEESBCSSSBSSHH-HHHHHHHHHHT-----------TCCCEEEEGG
T ss_pred             hcCCEEEEEecCCCCCcchh-HHHHHHHHHHc-----------CCCeEEEECc
Confidence            3445655543    289998 99977776653           4566667776

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.31  E-value=0.79  Score=30.16  Aligned_cols=48  Identities=8%  Similarity=-0.055  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCCCcHH--HHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHH
Q psy17592         87 LIYFGFTHCPDICPD--ELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE  145 (183)
Q Consensus        87 ll~f~~t~C~~~C~~--~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~  145 (183)
                      |+.|..++||. |..  ......++.++.       ++.+..+.++.   +++..+.+.+.
T Consensus        10 V~vy~~~~C~~-C~~~~~~~~ak~~L~~~-------gi~y~~vdI~~---~~~~~~~l~~~   59 (111)
T 2ct6_A           10 IRVFIASSSGF-VAIKKKQQDVVRFLEAN-------KIEFEEVDITM---SEEQRQWMYKN   59 (111)
T ss_dssp             EEEEECSSCSC-HHHHHHHHHHHHHHHHT-------TCCEEEEETTT---CHHHHHHHHHS
T ss_pred             EEEEEcCCCCC-cccchhHHHHHHHHHHc-------CCCEEEEECCC---CHHHHHHHHHH
Confidence            44567899998 993  111122232222       57777888872   34444444443

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=89.35  E-value=0.58  Score=31.46  Aligned_cols=26  Identities=4%  Similarity=0.084  Sum_probs=17.8

Q ss_pred             CCEEEEEEEc----CCCCCCcHHHHHHHHHH
Q psy17592         83 GKWALIYFGF----THCPDICPDELEKMAAV  109 (183)
Q Consensus        83 gk~vll~f~~----t~C~~~C~~~~~~l~~l  109 (183)
                      ...|+|+--.    +|||. |......|.+.
T Consensus        15 ~~~Vvvfsk~t~~~p~Cp~-C~~ak~lL~~~   44 (121)
T 3gx8_A           15 SAPVVLFMKGTPEFPKCGF-SRATIGLLGNQ   44 (121)
T ss_dssp             SCSEEEEESBCSSSBCTTH-HHHHHHHHHHH
T ss_pred             cCCEEEEEeccCCCCCCcc-HHHHHHHHHHc
Confidence            3445555544    39998 99987777665

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=88.30  E-value=0.31  Score=33.24  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      |+-|..+|||. |......|.+... +       ++.+-.|.+|.. ++.+.+++++++.
T Consensus        16 Vvvysk~~Cp~-C~~ak~lL~~~~~-~-------~v~~~~idid~~-~d~~~~~~~l~~~   65 (127)
T 3l4n_A           16 IIIFSKSTCSY-SKGMKELLENEYQ-F-------IPNYYIIELDKH-GHGEELQEYIKLV   65 (127)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHHEE-E-------ESCCEEEEGGGS-TTHHHHHHHHHHH
T ss_pred             EEEEEcCCCcc-HHHHHHHHHHhcc-c-------CCCcEEEEecCC-CCHHHHHHHHHHH
Confidence            45566899998 9997777766310 1       233445555532 2456677777654

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=88.09  E-value=0.14  Score=34.65  Aligned_cols=51  Identities=12%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      +..|..++|+. |+.....|.+-           ++.+-.+.+.....+.+.++.+++..|.+
T Consensus         6 i~iY~~p~C~~-c~ka~~~L~~~-----------gi~~~~~di~~~~~t~~eL~~~l~~~g~~   56 (119)
T 3f0i_A            6 VVIYHNPKCSK-SRETLALLENQ-----------GIAPQVIKYLETSPSVEELKRLYQQLGLN   56 (119)
T ss_dssp             CEEECCTTCHH-HHHHHHHHHHT-----------TCCCEEECHHHHCCCHHHHHHHHHHHTCS
T ss_pred             EEEEECCCChH-HHHHHHHHHHc-----------CCceEEEEeccCcCcHHHHHHHHHHcCCc
Confidence            34567899997 99988777752           44444444432236889999999999865

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=84.21  E-value=6.1  Score=30.48  Aligned_cols=39  Identities=23%  Similarity=0.401  Sum_probs=28.9

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +..|.-|...+||. |+..-..|.++..++       ++..+.+.+|
T Consensus        43 ~~~VelyTs~gCp~-C~~Ak~lL~~~~~~~-------~vi~l~~~v~   81 (270)
T 2axo_A           43 KGVVELFTSQGCAS-CPPADEALRKMIQKG-------DVVGLSYHVD   81 (270)
T ss_dssp             CCEEEEEECTTCTT-CHHHHHHHHHHHHHT-------SSEEEEEECS
T ss_pred             CcEEEEEeCCCCCC-hHHHHHHHHHhhccC-------CeeeEEEEEE
Confidence            35677799999998 999999999887653       4544455544

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=84.17  E-value=1.1  Score=33.36  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=24.3

Q ss_pred             EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      ..++.|+.+|||. |......|.+.           ++.+-.+.++.
T Consensus       170 ~~i~ly~~~~Cp~-C~~a~~~L~~~-----------~i~~~~~~i~~  204 (241)
T 1nm3_A          170 ESISIFTKPGCPF-CAKAKQLLHDK-----------GLSFEEIILGH  204 (241)
T ss_dssp             CCEEEEECSSCHH-HHHHHHHHHHH-----------TCCCEEEETTT
T ss_pred             ceEEEEECCCChH-HHHHHHHHHHc-----------CCceEEEECCC
Confidence            3466678999998 99877777653           35555666663

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=83.34  E-value=1.2  Score=33.58  Aligned_cols=43  Identities=12%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      ||..|-+|+..-||. |-.-.+.|.++.+++.+.   .+++|....+
T Consensus         1 ~~~~I~~~~D~~cPw-cyig~~~l~~a~~~~~~~---~~v~v~~~P~   43 (239)
T 3gl5_A            1 GHMRVEIWSDIACPW-CYVGKARFEKALAAFPHR---DGVEVVHRSF   43 (239)
T ss_dssp             -CEEEEEEECSSCHH-HHHHHHHHHHHHHTCTTG---GGEEEEEEEC
T ss_pred             CCeEEEEEEeCcCHh-HHHHHHHHHHHHHhcCcc---CceEEEEEEe
Confidence            566777778899998 999999999998876532   2567666654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=82.57  E-value=3.1  Score=30.66  Aligned_cols=41  Identities=12%  Similarity=0.272  Sum_probs=32.0

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+++.|...||+. |....+.++++.+++++     .+.++.|..|
T Consensus       132 ~~~~l~f~~~~~~~-~~~~~~~~~~vAk~~k~-----~i~F~~vd~~  172 (227)
T 4f9z_D          132 QIHLLLIMNKASPE-YEENMHRYQKAAKLFQG-----KILFILVDSG  172 (227)
T ss_dssp             CEEEEEEECTTSTT-HHHHHHHHHHHHHHTTT-----TCEEEEEETT
T ss_pred             ceEEEEEEcCCcch-HHHHHHHHHHHHHHhhC-----CEEEEEeCCc
Confidence            34566677789997 99999999999998864     4777777665

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=80.67  E-value=6.9  Score=28.22  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592         85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS  128 (183)
Q Consensus        85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is  128 (183)
                      ..|.+|+..-||. |-...+.|.++.+++.+     ++++....
T Consensus         3 ~~I~~~~D~~CP~-cy~~~~~l~~l~~~~~~-----~v~v~~~p   40 (208)
T 3kzq_A            3 IKLYYVHDPMCSW-CWGYKPTIEKLKQQLPG-----VIQFEYVV   40 (208)
T ss_dssp             EEEEEEECTTCHH-HHHHHHHHHHHHHHSCT-----TSEEEEEE
T ss_pred             eEEEEEECCCCch-hhhhhHHHHHHHHhCCC-----CceEEEEe
Confidence            3577888999998 99999999999998743     46665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	2e-21
d2b7ka1	169	c.47.1.10 (A:111-279) Thioredoxin-like protein Sco	4e-14
d1xzoa1	172	c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1	9e-09
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	0.001
d1xvqa_	166	c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium	0.003
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	0.004

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 71/120 (59%), Positives = 90/120 (75%)

Query: 64  GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
           G F L     +    +D+LG+W LIYFGFTHCPD+CP+ELEKM  VV++ID    +P++T
Sbjct: 1   GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLT 60

Query: 124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
           P+FIS+DPERDT E +  YVKEFSPK +GLTGT E+V    +AYRVY+S GPKD+D DYI
Sbjct: 61  PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 120

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 4e-14
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 58  GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
           GK ++GG F L D        ++ LGK+++IYFGF++CPD    +      +        
Sbjct: 1   GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPD-ICPDELDKLGLWLNTLSSK 59

Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
               + P+FI+ DP RD+P ++ +Y+ +F P  +GLTGT ++V  ACK YRVYFS  P  
Sbjct: 60  YGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNV 119

Query: 178 KDSD 181
           K   
Sbjct: 120 KPGQ 123

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 50.0 bits (118), Expect = 9e-09
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
           F   + + K V  E   G+  L  F FT+C  ICP     M  +  K+  +     I  I
Sbjct: 14  FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRI--I 71

Query: 126 FISVDPERDTPELVGKYVKEFSPKF---IGLTGTVEQV--AAACKAYRVYFSAGPKDKDS 180
             SVDPE D P+ + K+   +   F     LTG  +      A K+++        +   
Sbjct: 72  SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQV 131

Query: 181 D 181
            
Sbjct: 132 I 132

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 66  FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
               D + KP K  DF GK  L+    T C     
Sbjct: 39  LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRK 73

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 16/119 (13%)

Query: 60  VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
            A+G     F L   +   + S+ F GK  L+    +    +C   +          D +
Sbjct: 17  PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTF-------DER 69

Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175
                 T + +S D         G    E          +        + Y V  + GP
Sbjct: 70  AAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSF------GEDYGVTIADGP 122

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 58  GKVAIGGK---FEL---VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVN 111
           G   IG     F+    VD   K VK  D+ GK+ +++F       +CP E+   +    
Sbjct: 3   GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAE 62

Query: 112 KIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
                        + +SVD +      +    KE     + +    +      + Y V 
Sbjct: 63  DFRKL----GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.92
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.9
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.89
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.87
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.85
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.85
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.84
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.83
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.83
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.83
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.82
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.81
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.81
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.8
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.79
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.79
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.79
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.78
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.78
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.78
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.75
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.75
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.75
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.73
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.73
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.72
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.72
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.72
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.7
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.65
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.64
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.64
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.6
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.56
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.24
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.2
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.06
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.02
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.92
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.89
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.85
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.85
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.84
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.84
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.83
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.82
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.82
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.8
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.79
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.77
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.75
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.73
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.71
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.67
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.65
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.65
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.65
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.55
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.54
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.51
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.49
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.47
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.42
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.41
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.34
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	98.3
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.24
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.06
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	97.65
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.65
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.34
d1wjka_	100	Thioredoxin-like structure containing protein C330	97.32
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.76
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	95.47
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	94.97
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	94.95
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	94.84
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	94.6
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	93.46
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	91.9
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.41
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	91.38
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	90.25
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	88.75
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	88.37
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	86.83
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	83.54
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	82.84
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	82.84

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.5e-25  Score=164.05  Aligned_cols=112  Identities=26%  Similarity=0.409  Sum_probs=97.1

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      ++|+|+|+|.+|+.+++++++||++||+||+||||++|+.+++.|.++++++++.  +.++.+++||+||++|+++.+++
T Consensus        10 ~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~--~~~v~~v~isiDp~~Dtp~~l~~   87 (172)
T d1xzoa1          10 EVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE--NIDVRIISFSVDPENDKPKQLKK   87 (172)
T ss_dssp             ECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT--TCCCEEEEEESCTTTCCHHHHHH
T ss_pred             cCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccc--cccccccccccccccchHHHHHH
Confidence            5599999999999999999999999999999999977999999999999999765  45899999999999999999999


Q ss_pred             HHHHhCC---CeEEecCC-HHHHHH-HHhhcCeeEeeCC
Q psy17592        142 YVKEFSP---KFIGLTGT-VEQVAA-ACKAYRVYFSAGP  175 (183)
Q Consensus       142 ~~~~~~~---~~~~l~~~-~~~~~~-~~~~~gv~~~~~~  175 (183)
                      |++.++.   +|.+|+++ .+.+.. ..+.|++++...+
T Consensus        88 y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~  126 (172)
T d1xzoa1          88 FAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPE  126 (172)
T ss_dssp             HHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCS
T ss_pred             HHHHhccccccceeeccchHHHHHHHHHhheeeEEeccC
Confidence            9999884   57888874 444444 4577888776654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=5.1e-24  Score=157.87  Aligned_cols=110  Identities=21%  Similarity=0.279  Sum_probs=94.4

Q ss_pred             hcCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC-CC-
Q psy17592         55 RNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD-PE-  132 (183)
Q Consensus        55 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d-p~-  132 (183)
                      +.+..+..+|+|+|+|.+|+.++|++++||++||+||++|||+ |+.++|.|.++++++++     ++.+++|+.+ +. 
T Consensus         4 p~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~-C~~~~p~l~~l~~~y~~-----~v~~v~i~snd~~~   77 (187)
T d2cvba1           4 PELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPY-VKGSIGELVALAERYRG-----KVAFVGINANDYEK   77 (187)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHH-HHTTHHHHHHHHHHTTT-----TEEEEEEECCCTTT
T ss_pred             CCCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCcc-chhhhhhhhhhhhhccc-----cceeeeeecccccc
Confidence            3456677789999999999999999999999999999999998 99999999999999963     5899998643 22 


Q ss_pred             --CCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        133 --RDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       133 --~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                        .++++.+++|.++++.+|+.+.+....   +++.||+....
T Consensus        78 ~~~~~~e~~~~~~~~~~~~~p~l~D~~~~---~~~~~~v~~~P  117 (187)
T d2cvba1          78 YPEDAPEKMAAFAEEHGIFFPYLLDETQE---VAKAYRALRTP  117 (187)
T ss_dssp             CGGGSHHHHHHHHHHHTCCSCEEECSSSH---HHHHTTCCEES
T ss_pred             ccccchHHHHHHHHHhCCcceeeechhhh---hccccccccee
Confidence              357899999999999999999886554   88899987543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.1e-23  Score=147.44  Aligned_cols=118  Identities=58%  Similarity=1.133  Sum_probs=108.2

Q ss_pred             CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592         65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK  144 (183)
Q Consensus        65 ~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~  144 (183)
                      +|+|+|++|+++++++|+|||+||+||+||||..|+.+++.+.++++++...+....+.++.++.+|.+++++...++..
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK   81 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence            79999999999999999999999999999999889999999999999887664455788899999999999999999999


Q ss_pred             HhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCCCCCCC
Q psy17592        145 EFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDY  182 (183)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~~~  182 (183)
                      .++.+|..+.+.......+.+.|++.+.....+++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (160)
T d1wp0a1          82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDY  119 (160)
T ss_dssp             TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCC
T ss_pred             hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCc
Confidence            99999999999999999999999999998877766665

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=1.1e-23  Score=147.88  Aligned_cols=97  Identities=20%  Similarity=0.322  Sum_probs=86.7

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      ..++|++++.+|+++++++++||++||+||++|||+ |+.++|.|+++++++      +++.+++|+.+   ++.+.+++
T Consensus         3 ~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~-C~~~~p~l~~~~~~~------~~v~~v~v~~~---~~~~~~~~   72 (134)
T d1lu4a_           3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPF-CNAEAPSLSQVAAAN------PAVTFVGIATR---ADVGAMQS   72 (134)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHC------TTSEEEEEECS---SCHHHHHH
T ss_pred             CCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCC-ceecchhHHHHhhhh------ccccccccccc---cchhhhhh
Confidence            348999999999999999999999999999999997 999999999998864      27899999987   67899999


Q ss_pred             HHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        142 YVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      |+++++.+|+.+.+....   +++.||+..
T Consensus        73 ~~~~~~~~~p~~~d~~~~---~~~~~~v~~   99 (134)
T d1lu4a_          73 FVSKYNLNFTNLNDADGV---IWARYNVPW   99 (134)
T ss_dssp             HHHHHTCCSEEEECTTSH---HHHHTTCCS
T ss_pred             hhhhhccccceeeCchHH---HHHHcCCCc
Confidence            999999999999876544   888898754

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2e-22  Score=141.80  Aligned_cols=101  Identities=25%  Similarity=0.329  Sum_probs=90.9

Q ss_pred             cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      +..+|+|+++|.+|+.+++++++||++||+||++|||+ |..+++.++++++++.++    ++.+++|+.|   ++.+.+
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~-C~~~~~~l~~~~~~~~~~----~~~~v~i~~~---~~~~~~   73 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ----GVEIVAVNVG---ESKIAV   73 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG----TEEEEEEEES---CCHHHH
T ss_pred             cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccc-eeeccccccccccccccc----cccccccccc---chhhhH
Confidence            45669999999999999999999999999999999997 999999999999999866    8999999998   688999


Q ss_pred             HHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        140 GKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       140 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      ++|+++++.+|+.+.+....   +++.||+..
T Consensus        74 ~~~~~~~~~~~~~~~d~~~~---~~~~~~v~~  102 (137)
T d1st9a_          74 HNFMKSYGVNFPVVLDTDRQ---VLDAYDVSP  102 (137)
T ss_dssp             HHHHHHTTCCSCEEEETTSH---HHHHTTCCS
T ss_pred             HHHHHHcCCCccccccccch---hhhhhhccc
Confidence            99999999999998765444   788888753

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.85  E-value=1.1e-21  Score=139.19  Aligned_cols=102  Identities=18%  Similarity=0.188  Sum_probs=84.4

Q ss_pred             ccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        61 ~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      ...|+|+..+.+|..+++++++||+++|+||+|||++ |+.++|.|+++++++.++   .++++++|+.|   ++.+..+
T Consensus         6 k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~-C~~~~p~l~~l~~~~~~~---~~~~vi~is~d---~~~~~~~   78 (144)
T d1o73a_           6 KYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHVA---KNFEVVLISWD---ENESDFH   78 (144)
T ss_dssp             GTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---SSHHHHH
T ss_pred             cCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCcc-chhhhHHHHHHHHHHhhc---cCeEEEEEecc---hhHHHHH
Confidence            3459999999988899999999999999999999998 999999999999999653   37999999998   5778888


Q ss_pred             HHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +|.++.+. +....+.......+++.||+.
T Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~l~~~y~v~  107 (144)
T d1o73a_          79 DYYGKMPW-LALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             HHHTTCSS-EECCTTCHHHHHHHHHHHTCC
T ss_pred             HHHHhccc-cceeeeccchHHHHHHHcCCC
Confidence            88877542 233344555666788999875

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=1.4e-21  Score=136.79  Aligned_cols=94  Identities=21%  Similarity=0.333  Sum_probs=81.9

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV  143 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~  143 (183)
                      .+|+++|.+|+++++++++||++||+||++|||+ |+.++|.|.+++++++      ++.++.|+.+   |+.+..++|+
T Consensus         6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~-C~~~~p~l~~l~~~~~------~~~~v~v~~~---d~~~~~~~~~   75 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPT-CQGEAPVVGQVAASHP------EVTFVGVAGL---DQVPAMQEFV   75 (134)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEECS---SCHHHHHHHH
T ss_pred             cceeEEcCCCCEEeHHHhCCCEEEEEecccccCc-ccccchhhHHHHhhhc------cccccccccc---ccchhHHHHH
Confidence            5899999999999999999999999999999998 9999999999999864      5778888876   6889999999


Q ss_pred             HHhCCC-eEEecCCHHHHHHHHhhcCee
Q psy17592        144 KEFSPK-FIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       144 ~~~~~~-~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++++.. |+.+.+....   +++.||+.
T Consensus        76 ~~~~~~~~~~l~D~~~~---~~~~~~v~  100 (134)
T d1zzoa1          76 NKYPVKTFTQLADTDGS---VWANFGVT  100 (134)
T ss_dssp             HHTTCTTSEEEECTTCH---HHHHTTCC
T ss_pred             HhcCCcceeEEeeccch---HHHhcCCC
Confidence            999864 7888765444   78888865

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.84  E-value=1e-21  Score=143.81  Aligned_cols=95  Identities=23%  Similarity=0.351  Sum_probs=82.1

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE  137 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~  137 (183)
                      +.+..+|+|+++|.+|+.++|++++||++||+||++|||+ |..+++.++++++++.++    ++.+++|++|.  ++++
T Consensus        31 ~~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~-C~~~~~~l~~~~~~~~~~----~~~vv~vs~d~--~~~~  103 (176)
T d1jfua_          31 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSGP----NFEVVAINIDT--RDPE  103 (176)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHCBT----TEEEEEEECCC--SCTT
T ss_pred             CCCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccc-hHHHHHhhhhcccccccc----ccccccccccc--cchh
Confidence            4455679999999999999999999999999999999998 999999999999998865    89999999984  5678


Q ss_pred             HHHHHHHHhCCCeE-EecCCHHH
Q psy17592        138 LVGKYVKEFSPKFI-GLTGTVEQ  159 (183)
Q Consensus       138 ~~~~~~~~~~~~~~-~l~~~~~~  159 (183)
                      .+++|+++++.++. .+.+....
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~~~  126 (176)
T d1jfua_         104 KPKTFLKEANLTRLGYFNDQKAK  126 (176)
T ss_dssp             HHHHHHHHTTCCTTCCEECTTCH
T ss_pred             hhhhhHhhhCCcceeeeecchhH
Confidence            99999999997764 44444333

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.83  E-value=6.4e-21  Score=135.35  Aligned_cols=98  Identities=13%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592         65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK  144 (183)
Q Consensus        65 ~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~  144 (183)
                      .+.+.+.+|..+++++++||+++|+||||||++ |+.++|.|++++++++++   .++++|+|+.|   ++.+..++|.+
T Consensus        10 ~~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~p-C~~~~p~L~~l~~~~~~~---~~~~vi~vs~D---~~~~~~~~~~~   82 (144)
T d1i5ga_          10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEK---KNFEVMLISWD---ESAEDFKDYYA   82 (144)
T ss_dssp             CSEEEETTEEEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---SSHHHHHHHHT
T ss_pred             chhhccCCCCEeeHHHcCCCEEEEEEEecCCch-HhhhhHhHHHHHHHHHhc---cCcEEEEEecc---ccHHHHHHHHH
Confidence            567788889999999999999999999999998 999999999999999764   37999999999   57888999999


Q ss_pred             HhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        145 EFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      +++..+..+ .+......+++.||+.
T Consensus        83 ~~~~~~~~~-~d~~~~~~l~~~y~v~  107 (144)
T d1i5ga_          83 KMPWLALPF-EDRKGMEFLTTGFDVK  107 (144)
T ss_dssp             TCSSEECCT-TCHHHHHHHHHHTTCC
T ss_pred             hCCCCceee-EChHHHHHHHHHCCCC
Confidence            877544443 3444455688899975

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.83  E-value=2.9e-21  Score=139.02  Aligned_cols=104  Identities=24%  Similarity=0.303  Sum_probs=92.1

Q ss_pred             CCcccCCCeEEEcCCCCeeecCcc--CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDF--LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~--~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      ..+..+|+|+|.|.+|+.++|+++  +||++||+|| ++|||+ |..+++.++++++++++.    ++.+++|+.|    
T Consensus         3 ~vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~~----~~~vv~is~d----   73 (160)
T d2cx4a1           3 ELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPV-CTKELCTFRDKMAQLEKA----NAEVLAISVD----   73 (160)
T ss_dssp             CTTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHH-HHHHHHHHHHTCTTTSTT----CCEEEEEESS----
T ss_pred             cCCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCc-hhhhhhhhhccccccccc----cccccccccc----
Confidence            456677999999999999999998  7999999998 899997 999999999999998866    7999999976    


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +++.+++|.++++.+|+.+.+....   ++++||++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~D~~~~---~~~~~gv~~~~  109 (160)
T d2cx4a1          74 SPWCLKKFKDENRLAFNLLSDYNRE---VIKLYNVYHED  109 (160)
T ss_dssp             CHHHHHHHHHHHTCSSEEEECTTSH---HHHHTTCEEEE
T ss_pred             chhhhhhhcccceeeEEEeecCCcc---hHHHcCccccc
Confidence            7899999999999999999886554   89999997654

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=3.9e-21  Score=137.54  Aligned_cols=105  Identities=21%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCC-E-EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGK-W-ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk-~-vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      ..+..+|+|+++|.+|++++|++++|| + ++++||++|||. |..+++.|+++++++...    ++++++|+.|    +
T Consensus         3 ~vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~-C~~e~~~l~~~~~~~~~~----~~~vi~vs~d----~   73 (153)
T d1xvwa1           3 NVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGI-CQGELDQLRDHLPEFEND----DSAALAISVG----P   73 (153)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSH-HHHHHHHHHHTGGGTSSS----SEEEEEEESC----C
T ss_pred             CCcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccc-hhhhhhhhhhhhhhhccc----ccccccccch----h
Confidence            456677999999999999999999995 4 455667999997 999999999999998765    8999999976    7


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      ++.+++|.++++.+|+.+.+. +....++++||+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ygv~~~  109 (153)
T d1xvwa1          74 PPTHKIWATQSGFTFPLLSDF-WPHGAVSQAYGVFNE  109 (153)
T ss_dssp             HHHHHHHHHHHTCCSCEEECT-TTTTHHHHHTTCEET
T ss_pred             hhHHHHHhhhhccceeEEecc-cccchhHHHhhhhhh
Confidence            899999999999999987653 223458899998643

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.82  E-value=8.3e-21  Score=137.84  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=85.1

Q ss_pred             cccCCCeEEEc----CCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         60 VAIGGKFELVD----CNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        60 ~~~~p~f~l~d----~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      +..+|+|++++    .++++++|++++||++||+||.. |||. |..|++.++++++++++.    ++++++||.|    
T Consensus         4 G~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~-C~~e~~~~~~~~~~f~~~----g~~vv~IS~D----   74 (166)
T d1we0a1           4 GTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFV-CPTELEDVQKEYAELKKL----GVEVYSVSTD----   74 (166)
T ss_dssp             TCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSS-CTHHHHHHHHHHHHHHHT----TEEEEEEESS----
T ss_pred             CCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcH-HHHHHHHHHHHHHhhccc----ceEEEecccc----
Confidence            34569999996    34567999999999999999977 9997 999999999999999976    8999999998    


Q ss_pred             cHHHHHHHHHH----hCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        135 TPELVGKYVKE----FSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       135 ~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                      +++..++|.++    ++.+|+.+.+....   ++++||+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~fpll~D~~~~---v~~~ygv~~~  113 (166)
T d1we0a1          75 THFVHKAWHENSPAVGSIEYIMIGDPSQT---ISRQFDVLNE  113 (166)
T ss_dssp             CHHHHHHHHHSCHHHHTCCSEEEECTTCH---HHHHTTCEET
T ss_pred             cHHHHHHHhhhhhhhcccccccccCcccH---HHHHhCCCcc
Confidence            56666676665    47899999887655   9999998754

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.81  E-value=6.1e-20  Score=129.76  Aligned_cols=102  Identities=17%  Similarity=0.240  Sum_probs=81.5

Q ss_pred             cCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .+|+|++.+.+|+.+++++++||+|||+||++|||+ |..++|.|.++++++..+   .++.+++|+.|   ++.+....
T Consensus         5 ~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~-C~~~~~~l~~l~~~~~~~---~~~~~v~is~d---~~~~~~~~   77 (144)
T d1o8xa_           5 YLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHES---KNFEVVFCTWD---EEEDGFAG   77 (144)
T ss_dssp             TSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEECC---CSHHHHHH
T ss_pred             CCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccc-cccccchhHHhhhhcccc---ccccccccccc---ccHHHHHH
Confidence            459999999999999999999999999999999998 999999999999999764   37999999998   56677777


Q ss_pred             HHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        142 YVKEFSPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      +......... .....+...++++.||+..
T Consensus        78 ~~~~~~~~~~-~~~~~d~~~~l~~~y~v~~  106 (144)
T d1o8xa_          78 YFAKMPWLAV-PFAQSEAVQKLSKHFNVES  106 (144)
T ss_dssp             HHTTCSSEEC-CGGGHHHHHHHHHHTTCCS
T ss_pred             HHhhccccce-eeecccchhhHHHHcCCCc
Confidence            7655432211 1123344567899998764

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=9.5e-20  Score=132.39  Aligned_cols=102  Identities=16%  Similarity=0.247  Sum_probs=88.8

Q ss_pred             CCCcccCCCeEEEcCCC---------------CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCC
Q psy17592         57 LGKVAIGGKFELVDCNN---------------KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVP  120 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G---------------~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~  120 (183)
                      +..+..+|+|+|++.+|               +.+++++++||++||+|| ++|||. |..+++.+++.++++++.    
T Consensus         3 l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~-C~~~~~~~~~~~~~~~~~----   77 (169)
T d2bmxa1           3 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFV-CPTEIAAFSKLNDEFEDR----   77 (169)
T ss_dssp             CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCC-CHHHHHHHHHTHHHHHTT----
T ss_pred             CCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCcc-cccccccccccccccccc----
Confidence            45677789999999887               688999999999999998 999997 999999999999999977    


Q ss_pred             CeeEEEEEeCCCCCcHHHHHHHHHHhC----CCeEEecCCHHHHHHHHhhcCee
Q psy17592        121 NITPIFISVDPERDTPELVGKYVKEFS----PKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ++++++|+.|    ++...++|.++++    .+|+.+.+....   ++++||+.
T Consensus        78 g~~vv~is~d----~~~~~~~~~~~~~~~~~~~f~ll~D~~~~---v~~~ygv~  124 (169)
T d2bmxa1          78 DAQILGVSID----SEFAHFQWRAQHNDLKTLPFPMLSDIKRE---LSQAAGVL  124 (169)
T ss_dssp             TEEEEEEESS----CHHHHHHHHHHCTTGGGCCSCEEECTTSH---HHHHHTCB
T ss_pred             Ccceeecccc----chhhhhhhcccccccccceEEEEeccHHH---HHHHcCCC
Confidence            8999999998    5677777877775    889999886554   89999984

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.2e-20  Score=133.38  Aligned_cols=104  Identities=8%  Similarity=0.035  Sum_probs=89.9

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCcc--CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDF--LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~--~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      .+..+..+|+|+|+|.+|+.++|+++  +|++|+++|| ++|||. |..+++.+++.+.++++     ++.+++||.|  
T Consensus         4 ~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~-C~~~~~~~~~~~~~~~~-----~~~~~~is~d--   75 (156)
T d2a4va1           4 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPG-STRQASGFRDNYQELKE-----YAAVFGLSAD--   75 (156)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHH-HHHHHHHHHHHHHHHTT-----TCEEEEEESC--
T ss_pred             cCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcc-hhhhhHHHHHHHHHHhh-----ccceeeeccc--
Confidence            45667788999999999999999998  5678888887 899997 99999999999999964     4678999976  


Q ss_pred             CCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        133 RDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                        +++.+++|.++++.+|+.|.++...   ++++||+...
T Consensus        76 --~~~~~~~f~~~~~l~f~~L~D~~~~---v~~~ygv~~~  110 (156)
T d2a4va1          76 --SVTSQKKFQSKQNLPYHLLSDPKRE---FIGLLGAKKT  110 (156)
T ss_dssp             --CHHHHHHHHHHHTCSSEEEECTTCH---HHHHHTCBSS
T ss_pred             --hhhhHHhhhcccCccceeccchHHH---HHHHcCCCcc
Confidence              7899999999999999999886554   8999998643

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.5e-20  Score=134.22  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+|.|.+|+.++|++++||++||+|| +.|||. |..+++.|++++.++      +++++++||.|    +
T Consensus        18 ~~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~-C~~~~~~l~~~~~~~------~~~~vv~Is~d----~   86 (164)
T d1qxha_          18 PQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGV-CAASVRKFNQLATEI------DNTVVLCISAD----L   86 (164)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSC-CCHHHHHHHHHHHTS------TTEEEEEEESS----C
T ss_pred             CCCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhccc-chHHHHHHHHHHHhh------ccceeeeEEcC----C
Confidence            45566779999999999999999999999999988 669997 999999999988754      27999999987    7


Q ss_pred             HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      ++..++|.++++..++.+.... ....++++||+.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~ygv~~~~  123 (164)
T d1qxha_          87 PFAQSRFCGAEGLNNVITLSTF-RNAEFLQAYGVAIAD  123 (164)
T ss_dssp             HHHHTTCCSSTTCTTEEEEECT-TCHHHHHHTTCBBCS
T ss_pred             HHHHHHHHHHhCCCcceeeccc-cchhhHHhcCeEeec
Confidence            8899999999998887765432 124589999987654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=5.6e-20  Score=130.04  Aligned_cols=103  Identities=11%  Similarity=0.065  Sum_probs=86.8

Q ss_pred             CcccCCCeEEEc--CCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC--C
Q psy17592         59 KVAIGGKFELVD--CNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER--D  134 (183)
Q Consensus        59 ~~~~~p~f~l~d--~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~--d  134 (183)
                      .+.++|+|++.+  .+|+.+++++++||+++|+||++|||+ |..++|.|+++++++++     ++.+++|+++...  .
T Consensus         3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~-C~~~~p~l~~l~~~~~~-----~~~~i~v~~~~~~~~~   76 (143)
T d2b5xa1           3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHL-CKEAMPQVNEFRDKYQD-----QLNVVAVHMPRSEDDL   76 (143)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TSEEEEEECCCSTTTS
T ss_pred             CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcc-hhhhhhhhhhhhhhhhc-----cccceeEEeecccccc
Confidence            345669998776  489999999999999999999999998 99999999999999864     5889999886532  3


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      ..+.+++|+++++.+|+.+.+....   +++.||+.
T Consensus        77 ~~~~~~~~~~~~~~~~p~~~D~~~~---~~~~~~v~  109 (143)
T d2b5xa1          77 DPGKIKETAAEHDITQPIFVDSDHA---LTDAFENE  109 (143)
T ss_dssp             SHHHHHHHHHHTTCCSCEEECSSCH---HHHHTCCC
T ss_pred             chhhhhhHHHhhccCccccccCccc---hHHHcCCC
Confidence            5788999999999999998876554   78888864

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.79  E-value=3.3e-20  Score=137.70  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=88.2

Q ss_pred             cccCCCeEE----EcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         60 VAIGGKFEL----VDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        60 ~~~~p~f~l----~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      ..++|+|++    .|.+|+.++|+|++|||+||+|| ++|||. |..|++.++++++++.+.    ++++++||.|    
T Consensus         6 ~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~-C~~E~~~f~~~~~~f~~~----g~~VlgIS~D----   76 (194)
T d1uula_           6 LHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFV-CPTEICQFSDRVKEFSDI----GCEVLACSMD----   76 (194)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSH-HHHHHHHHHHTHHHHHTT----TEEEEEEESS----
T ss_pred             CCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCcccc-chhhhhHHHhhhhhhccC----ceEEEEEecC----
Confidence            446799994    47789999999999999999999 999996 999999999999999976    8999999988    


Q ss_pred             cHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        135 TPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       135 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +.+..++|.+++       +.+|+.+.+....   ++++||++-..
T Consensus        77 s~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~---v~~~ygv~~~~  119 (194)
T d1uula_          77 SEYSHLAWTSIERKRGGLGQMNIPILADKTKC---IMKSYGVLKEE  119 (194)
T ss_dssp             CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCH---HHHHHTCEETT
T ss_pred             chhhhhhhhhhhhhhccccCCCcceeeCCcch---HHHHcCCeecc
Confidence            678888888765       4789999887655   99999997443

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.78  E-value=4.9e-20  Score=133.71  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=84.4

Q ss_pred             CcccCCCeE----EEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592         59 KVAIGGKFE----LVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        59 ~~~~~p~f~----l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      .+.++|+|+    |.|.+|+.++|+|++||++||+|| ++|||. |..+++.|++.++++++.    ++.+++||.|   
T Consensus         5 vG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~-C~~e~~~l~~~~~~~~~~----~~~v~~is~d---   76 (167)
T d1e2ya_           5 LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFV-CPTEIIQFSDDAKRFAEI----NTEVISCSCD---   76 (167)
T ss_dssp             TTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSS-CCHHHHHHHHTHHHHHTT----TEEEEEEESS---
T ss_pred             CCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccc-cchhhHHHHHHHHHhhcC----ceEEEeecCC---
Confidence            455679999    567899999999999999999999 999997 999999999999999977    8999999987   


Q ss_pred             CcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCee
Q psy17592        134 DTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       134 d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                       +++...+|.++.       ..+++.+.+....   +++.||+.
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~---~~~~y~v~  116 (167)
T d1e2ya_          77 -SEYSHLQWTSVDRKKGGLGPMAIPMLADKTKA---IARAYGVL  116 (167)
T ss_dssp             -CHHHHHHHHHSCGGGTCCCCCSSCEEECTTCH---HHHHHTCE
T ss_pred             -cHHhHHHHHhhHHHhcccccccccccccchhH---HHHHcCCC
Confidence             667777777654       2577777776544   88888875

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.4e-19  Score=126.42  Aligned_cols=118  Identities=44%  Similarity=0.943  Sum_probs=96.6

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL  138 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~  138 (183)
                      .|..++||+|+|++|+++++++++||++||+||++||++.|......+..++..+.... ...+.++.++.++..++.+.
T Consensus         2 ~p~~g~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (169)
T d2b7ka1           2 KPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY-GITLQPLFITCDPARDSPAV   80 (169)
T ss_dssp             CCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEESCTTTCCHHH
T ss_pred             CCCcCCCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccc-cccceeeeeccccccCchhh
Confidence            45566899999999999999999999999999999999888888888887776654321 34788889999998899999


Q ss_pred             HHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCC
Q psy17592        139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD  177 (183)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~  177 (183)
                      ...+....+..+...++.........+.|++.+...+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (169)
T d2b7ka1          81 LKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNV  119 (169)
T ss_dssp             HHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------
T ss_pred             hhhhhccccccccccccchhhhhhhhhhhheeeeecccC
Confidence            999999999999999999999999999999988775543

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.4e-19  Score=130.18  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=87.1

Q ss_pred             cCCCeEEE---cCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592         62 IGGKFELV---DCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE  137 (183)
Q Consensus        62 ~~p~f~l~---d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~  137 (183)
                      .+|+|+++   +.+|+.++|+|++||++||+|| +.|||. |..|++.+++++.++.+.    ++++++||.|    +.+
T Consensus         2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~-C~~e~~~~~~~~~~~~~~----~~~vigIS~d----~~~   72 (158)
T d1zyea1           2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFV-CPTEIIAFSDKASEFHDV----NCEVVAVSVD----SHF   72 (158)
T ss_dssp             BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSS-SHHHHHHHHHHHHHHHHT----TEEEEEEESS----CHH
T ss_pred             CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCc-cccchhhHHHhHHHhhcC----CceEEeccCc----CHH
Confidence            45999977   4567799999999999999999 889996 999999999999999876    8999999988    788


Q ss_pred             HHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        138 LVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       138 ~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      ..++|+++.       +.+|+.+.+....   +++.||++-..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~f~llsD~~~~---~~~~ygv~~~~  112 (158)
T d1zyea1          73 SHLAWINTPRKNGGLGHMNIALLSDLTKQ---ISRDYGVLLEG  112 (158)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSEEEECTTSH---HHHHTTCEETT
T ss_pred             HHHHHHhhhHhhccccccccccccccccH---HHHHHHhcccc
Confidence            899999875       6799999887655   89999987543

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.75  E-value=5.2e-19  Score=125.06  Aligned_cols=95  Identities=16%  Similarity=0.231  Sum_probs=75.0

Q ss_pred             CCCeEEEcCCC--------CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         63 GGKFELVDCNN--------KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        63 ~p~f~l~d~~G--------~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      +|+|++++.+|        ..+++++++||++||+||++||++ |+.++|.+.++++.+       ++.+++|+.+   +
T Consensus         3 aP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~-C~~~~p~l~~l~~~~-------~~~~~~i~~~---~   71 (144)
T d1knga_           3 APQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVP-CHDEAPLLTELGKDK-------RFQLVGINYK---D   71 (144)
T ss_dssp             CCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHTTCT-------TSEEEEEEES---C
T ss_pred             CCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeecccccc-ccccCchhhhhhhcc-------CceeEEEEee---e
Confidence            46676666555        668899999999999999999998 999999999886543       6889999988   5


Q ss_pred             cHHHHHHHHHHhCCCeEEec-CCHHHHHHHHhhcCeeE
Q psy17592        135 TPELVGKYVKEFSPKFIGLT-GTVEQVAAACKAYRVYF  171 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~gv~~  171 (183)
                      +....++|.++++..++.+. +...   .+++.||+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~~  106 (144)
T d1knga_          72 AADNARRFLGRYGNPFGRVGVDANG---RASIEWGVYG  106 (144)
T ss_dssp             CHHHHHHHHHHHCCCCSEEEEETTS---HHHHHTTCCS
T ss_pred             chHHHHHHHHHcCCccccccccccc---hhhhhcCccc
Confidence            77888999999998776443 3333   3788888653

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.75  E-value=3.8e-19  Score=128.51  Aligned_cols=107  Identities=13%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592         56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD  134 (183)
Q Consensus        56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d  134 (183)
                      .+..+..+|+|+|.|.+|+.++|++++||++||.|| +.|||. |..+++.+.+.+.+++      ++.+++|+.|    
T Consensus        15 ~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~-C~~~~~~l~~~~~~~~------~~~vv~Is~d----   83 (163)
T d1psqa_          15 QLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGI-CSTQTRRFNEELAGLD------NTVVLTVSMD----   83 (163)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHH-HHHHHHHHHHHTTTCT------TEEEEEEESS----
T ss_pred             CCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEecccccccc-chhhHHHHHHHHHhhc------ccceEEEEec----
Confidence            455677789999999999999999999999999998 779996 9999999988766552      7899999987    


Q ss_pred             cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      +++..++|.++++..+..+..+. ....+++.||+.....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ygv~~~~~  122 (163)
T d1psqa_          84 LPFAQKRWCGAEGLDNAIMLSDY-FDHSFGRDYALLINEW  122 (163)
T ss_dssp             CHHHHHHHHHHHTCTTSEEEECT-TTCHHHHHHTCBCTTT
T ss_pred             cHHHHHHHHHHcCCcceeeeccc-cchhHHHhheeecccc
Confidence            67888999999886554433321 1124888899875543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.75  E-value=1.2e-19  Score=127.97  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC---CCcHHHHH
Q psy17592         64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE---RDTPELVG  140 (183)
Q Consensus        64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~---~d~~~~~~  140 (183)
                      +..+|++.+|+++++++++||++||+||++|||+ |+.++|.|++++++++..    ++.+++|+.+..   .+..+..+
T Consensus         4 ~~~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~-C~~~~~~l~~l~~~~~~~----~~~~i~v~~~~~~~~~~~~~~~~   78 (143)
T d2fy6a1           4 TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPL-CLSELGQTEKWAQDAKFS----SANLITVASPGFLHEKKDGDFQK   78 (143)
T ss_dssp             HHHTCEETTSCBGGGGCCTTSCEEEEEECTTCHH-HHTTHHHHHHHHHCGGGT----TSEEEEEECTTSTTCCCTTHHHH
T ss_pred             CcceeECCCCCEeeHHHhCCCEEEEEEECCCCcc-ccccCcchhhhhhhhccC----CcEEEEEeeeecccccchhhhhh
Confidence            3457899999999999999999999999999998 999999999999998865    799999987642   23333344


Q ss_pred             HHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592        141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~  170 (183)
                      .+.+..+..|+.+.+....   +++.||+.
T Consensus        79 ~~~~~~~~~~~~~~D~~~~---~~~~~~v~  105 (143)
T d2fy6a1          79 WYAGLNYPKLPVVTDNGGT---IAQSLNIS  105 (143)
T ss_dssp             HHTTSCCTTSCEEECTTCH---HHHHTTCC
T ss_pred             hhhhcCCcccccccccchH---HHHHcCCC
Confidence            4444444678888775444   88889875

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=2.4e-18  Score=124.42  Aligned_cols=105  Identities=18%  Similarity=0.165  Sum_probs=86.0

Q ss_pred             CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+..+|+|+|.|.+|+.++|++++||++||+||.+ ||| +|..|++.+++.+.+++      ++.+++||.|    +
T Consensus        16 p~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp-~C~~e~~~~~~~~~~~~------~~~vi~iS~d----~   84 (164)
T d1q98a_          16 PQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTG-VCATSVRKFNQQAAKLS------NTIVLCISAD----L   84 (164)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSS-CCCHHHHHHHHHHHHST------TEEEEEEESS----C
T ss_pred             CCCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccC-cccHHHHHHHHHHHHhc------cceEEeecCC----c
Confidence            4566777999999999999999999999999999966 566 59999999999999874      6899999987    7


Q ss_pred             HHHHHHHHHHhCCCe-EEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        136 PELVGKYVKEFSPKF-IGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      ++.+++|.++++..+ ..+..+..  ..+++.||+.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~  122 (164)
T d1q98a_          85 PFAQARFCGAEGIENAKTVSTFRN--HALHSQLGVDIQTG  122 (164)
T ss_dssp             HHHHTTCTTTTTCTTEEEEECTTC--THHHHHTTCEECSS
T ss_pred             HHHHHHHHHHhCCccccccccccc--hhHHHhhceecccC
Confidence            899999999998764 44433222  34888899877654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.73  E-value=3.2e-18  Score=124.43  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             cccCCCeEEEcCCC-----CeeecCccCCC-EEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         60 VAIGGKFELVDCNN-----KPVKSEDFLGK-WALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        60 ~~~~p~f~l~d~~G-----~~v~l~~~~gk-~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      +.++|+|++++.+|     +.++|++++|| ++||+|| +.|||. |..|++.+++.+.++++.    ++++++||.|  
T Consensus         4 G~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~-C~~e~~~~~~~~~~f~~~----g~~Vvgis~d--   76 (170)
T d1zofa1           4 TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFV-CPTEIIAFDKRVKDFHEK----GFNVIGVSID--   76 (170)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSS-CCTHHHHHHHTHHHHHHT----TEEEEEEESS--
T ss_pred             CCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCc-CHHHHHHHHHhHHhhccC----CeeEeccccc--
Confidence            45679999999887     47999999995 8999999 999997 999999999999999876    8999999987  


Q ss_pred             CCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        133 RDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       133 ~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                        +.+..++|.+.+       +.+|+.+.+....   ++++||+..
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~---v~~~ygv~~  117 (170)
T d1zofa1          77 --SEQVHFAWKNTPVEKGGIGQVSFPMVADITKS---ISRDYDVLF  117 (170)
T ss_dssp             --CHHHHHHHHTSCGGGTCCCCCSSCEEECTTSH---HHHHTTCEE
T ss_pred             --chhhHHHHHhhhhhcccccCcccccccccccH---HHHHcCCCc
Confidence              678888888775       5788888886544   999999864

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2e-18  Score=120.83  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=69.4

Q ss_pred             EcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         69 VDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        69 ~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .|.+|+.++++++ +||+|||+||||||++ |+.++|.|++++++        ++.+++++.+   ++.+....+..+.+
T Consensus         5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~p-C~~e~p~l~~~~~~--------~~~vi~i~~~---~~~~~~~~~~~~~~   72 (136)
T d1z5ye1           5 LDNPGQFYQADVLTQGKPVLLNVWATWCPT-SRAEHQYLNQLSAQ--------GIRVVGMNYK---DDRQKAISWLKELG   72 (136)
T ss_dssp             SSSTTCEECHHHHHSSSCEEEEEECTTCHH-HHHHHHHHHHHHHT--------TCCEEEEEES---CCHHHHHHHHHHHC
T ss_pred             ccCCCcEecHHHHcCCCEEEEEEEcCcCCC-cCccccchhhhhhh--------hhhhcccccc---cchhhhHHHHHHcC
Confidence            3566999999998 8999999999999998 99999999998653        6889999998   56778888888887


Q ss_pred             CCeE-EecCCHHHHHHHHhhcCee
Q psy17592        148 PKFI-GLTGTVEQVAAACKAYRVY  170 (183)
Q Consensus       148 ~~~~-~l~~~~~~~~~~~~~~gv~  170 (183)
                      ..+. .+.+....   +++.||+.
T Consensus        73 ~~~~~~~~d~~~~---~~~~~~v~   93 (136)
T d1z5ye1          73 NPYALSLFDGDGM---LGLDLGVY   93 (136)
T ss_dssp             CCCSEEEEESSCH---HHHHHTCC
T ss_pred             Cccceeecccchh---HHHhcccC
Confidence            6554 44444333   67777764

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=2.4e-18  Score=124.60  Aligned_cols=102  Identities=15%  Similarity=0.159  Sum_probs=76.6

Q ss_pred             CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      ..+..+|+|+|.|.+|+.++|++++||++||+||++ |||. |..+++.+++.+++.       ++++++|+.|    ++
T Consensus        18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~-C~~e~~~l~~~~~~~-------g~~vv~Is~d----~~   85 (166)
T d1xvqa_          18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPV-CATSVRTFDERAAAS-------GATVLCVSKD----LP   85 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSC-CCHHHHHHHHHHHHT-------TCEEEEEESS----CH
T ss_pred             CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccc-cHHHHHHHhhhcccc-------cccccccccc----hH
Confidence            345667999999999999999999999999999955 7775 999999887766543       6899999987    67


Q ss_pred             HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      ...++|.++++..+..+..+.  ...+++.||+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~  120 (166)
T d1xvqa_          86 FAQKRFCGAEGTENVMPASAF--RDSFGEDYGVTIAD  120 (166)
T ss_dssp             HHHTTCC------CEEEEECT--TSSHHHHTTCBBCS
T ss_pred             HHHHHHHHHhCCcccccccch--hHHHHHHhCeeecc
Confidence            888899999888777665442  23478888877543

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-18  Score=127.74  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             CCCcccCCCeEEE---cCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592         57 LGKVAIGGKFELV---DCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE  132 (183)
Q Consensus        57 ~~~~~~~p~f~l~---d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~  132 (183)
                      +..+..+|+|+++   |.+|+.++|+|++|||+||+|| +.|||. |..|+..+++.++++++.    ++.+++||.|  
T Consensus         5 ~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~-C~~e~~~~~~~~~~f~~~----g~~vigIS~D--   77 (197)
T d1qmva_           5 ARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFV-CPTEIIAFSNRAEDFRKL----GCEVLGVSVD--   77 (197)
T ss_dssp             BCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHTHHHHHTT----TEEEEEEESS--
T ss_pred             CcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEeccccccc-chhhhHHHHHHHHHhccC----CcEEEEEecC--
Confidence            3456677999875   6678899999999999999999 899995 999999999999999977    8999999998  


Q ss_pred             CCcHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592        133 RDTPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFS  172 (183)
Q Consensus       133 ~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~  172 (183)
                        +++..++|.++.       +.+|+.+.+....   ++++||+.-.
T Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~---va~~ygv~~~  119 (197)
T d1qmva_          78 --SQFTHLAWINTPRKEGGLGPLNIPLLADVTRR---LSEDYGVLKT  119 (197)
T ss_dssp             --CHHHHHHHHTSCGGGTCCCSCSSCEEECTTCH---HHHHTTCEET
T ss_pred             --CHHHHHhhhcchhhhcCcCCCccceEeccchH---HHHHhCCCcc
Confidence              678888998764       5789999886555   9999998644

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=6e-18  Score=124.51  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=85.6

Q ss_pred             ccCCCeEEEc-CCC--CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         61 AIGGKFELVD-CNN--KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        61 ~~~p~f~l~d-~~G--~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      ..+|+|++.+ .+|  +.++|++++||++||+|| ..||| +|..|++.+++.++++.+.    ++++++||.|    +.
T Consensus         5 ~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp-~C~~e~~~f~~~~~~f~~~----~~~v~gIS~D----s~   75 (186)
T d1n8ja_           5 TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTF-VSPTELGDVADHYEELQKL----GVDVYSVSTD----TH   75 (186)
T ss_dssp             CBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCS-HHHHHHHHHHHHHHHHHHT----TEEEEEEESS----CH
T ss_pred             CcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCC-ccHHHHHHHHHhhhhcccc----cEEEEecccc----CH
Confidence            3459999876 355  468899999999999999 66676 5999999999999999876    8999999987    78


Q ss_pred             HHHHHHHHHhC----CCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        137 ELVGKYVKEFS----PKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       137 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      +..++|.+.++    .+|+.+.+....   ++++||+....
T Consensus        76 ~sh~~f~~~~~~~~~~~fpllsD~~~~---v~~~yGv~~~~  113 (186)
T d1n8ja_          76 FTHKAWHSSSETIAKIKYAMIGDPTGA---LTRNFDNMRED  113 (186)
T ss_dssp             HHHHHHHHHCTTGGGCCSEEEECTTSH---HHHHTTCEETT
T ss_pred             HHHHHHhccccccccccccccccHHHH---HHHHhCCCccc
Confidence            99999999875    889999886655   99999997543

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.65  E-value=1.4e-16  Score=115.58  Aligned_cols=97  Identities=23%  Similarity=0.347  Sum_probs=84.1

Q ss_pred             CCCeEEE----cCCCCeeecCccCC-CEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         63 GGKFELV----DCNNKPVKSEDFLG-KWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        63 ~p~f~l~----d~~G~~v~l~~~~g-k~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      +|+|+|+    |.+|+.++|+|++| |++||+|| +.|||. |..|+..+++.++++.+.    ++.+|+||.|    ++
T Consensus         2 APdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~-Ct~e~~~f~~~~~~f~~~----g~~vigIS~D----~~   72 (170)
T d2h01a1           2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFV-CPSEIIALDKALDSFKER----NVELLGCSVD----SK   72 (170)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSS-CCHHHHHHHHTHHHHHHT----TEEEEEEESS----CH
T ss_pred             CCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCc-cchhhHHHhhhhhhhhcC----CeeEecccCC----cH
Confidence            5999999    55667899999998 89999998 899996 999999999999999876    8999999987    78


Q ss_pred             HHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592        137 ELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYF  171 (183)
Q Consensus       137 ~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~  171 (183)
                      +..++|.+++       +.+|+.+.+....   ++++||+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~f~llsD~~~~---~~~~ygv~~  111 (170)
T d2h01a1          73 FTHLAWKKTPLSQGGIGNIKHTLISDISKS---IARSYDVLF  111 (170)
T ss_dssp             HHHHHHHTSCGGGTCCCSCSSEEEECTTSH---HHHHTTCEE
T ss_pred             HHHHhHhhhhhhhccccccCCceeEcCccH---HHHHhCCcc
Confidence            8888998763       4789999887655   899999864

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.64  E-value=1e-16  Score=121.83  Aligned_cols=101  Identities=16%  Similarity=0.166  Sum_probs=80.7

Q ss_pred             cccCCCeEEEcCCCCeeecCcc---CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         60 VAIGGKFELVDCNNKPVKSEDF---LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        60 ~~~~p~f~l~d~~G~~v~l~~~---~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      +..+|+|++.+.+|+ +++.++   +|||+||+|| +.|||. |..|++.++++++++++.    ++++++||+|    +
T Consensus         4 Gd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpv-CttEl~~~~~~~~ef~~~----g~~vigiS~D----s   73 (237)
T d2zcta1           4 GERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPV-CTTEFVSFARRYEDFQRL----GVDLIGLSVD----S   73 (237)
T ss_dssp             TSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHH-HHHHHHHHHHTHHHHHHT----TEEEEEEESS----C
T ss_pred             CCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCcc-CHHHHHHHHhhhhhhccC----CcceeeccCC----c
Confidence            445699999999996 666654   8999999998 999996 999999999999999977    8999999998    4


Q ss_pred             HHHHHHHHHH------hCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592        136 PELVGKYVKE------FSPKFIGLTGTVEQVAAACKAYRVYFSA  173 (183)
Q Consensus       136 ~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~gv~~~~  173 (183)
                      .+..++|.+.      .+.+|+.+.+....   ++++||+.+..
T Consensus        74 ~~sh~~w~~~~~~~~~~~l~fpllsD~~~~---vak~yGv~~~~  114 (237)
T d2zcta1          74 VFSHIKWKEWIERHIGVRIPFPIIADPQGT---VARRLGLLHAE  114 (237)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSCEEECGGGH---HHHHTTCC---
T ss_pred             HHHHHHHhhhhhhhcccccccccccCcchH---HHHHcCCcccc
Confidence            5555555543      35788888876555   99999986543

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=118.79  Aligned_cols=103  Identities=19%  Similarity=0.305  Sum_probs=86.6

Q ss_pred             CcccCCCeEEEcCCCCeeecCccCC-CEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592         59 KVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP  136 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~  136 (183)
                      .+..+|+|++.+.+|+ ++|++++| ||+||+|+ +.|||. |..|+..+++.+.++++.    ++++++||.|    +.
T Consensus         3 VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpv-C~~El~~~~~~~~~f~~~----g~~v~giS~D----s~   72 (220)
T d1prxa_           3 LGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPV-CTTELGRAAKLAPEFAKR----NVKLIALSID----SV   72 (220)
T ss_dssp             TTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHH-HHHHHHHHHHHHHHHHTT----TEEEEEEESS----CH
T ss_pred             CCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCc-chhhHHHHHHHHHHhhcc----cceeeccccc----cc
Confidence            3566799999999997 89999987 89999998 678985 999999999999999977    8999999998    56


Q ss_pred             HHHHHHHHHh----------CCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        137 ELVGKYVKEF----------SPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       137 ~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      +...+|.+..          +.+|+.+.+....   ++++||+..+..
T Consensus        73 ~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~---va~~ygv~~~~~  117 (220)
T d1prxa_          73 EDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE---LAILLGMLDPAE  117 (220)
T ss_dssp             HHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH---HHHHTTSSCSCT
T ss_pred             cchhhhhhhhhhccccccccCcccccccCcccH---HHHHhCCccccc
Confidence            6666666552          4789999887655   999999986654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-15  Score=109.94  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=72.3

Q ss_pred             CCeEEEcCC-CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHH
Q psy17592         64 GKFELVDCN-NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPEL  138 (183)
Q Consensus        64 p~f~l~d~~-G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~  138 (183)
                      -+|+++|.+ |+.++|++++||++||.+|||||+. |..+.+.|++++++++++    ++.|+++..+-    +..+.++
T Consensus         4 ydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~-t~~~y~~L~~L~~ky~~~----g~~Il~fP~nqF~~qE~~~~~e   78 (184)
T d2f8aa1           4 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGT-TVRDYTQMNELQRRLGPR----GLVVLGFPCNQFGHQENAKNEE   78 (184)
T ss_dssp             GGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG----TEEEEEEECCCSTTTTCSCHHH
T ss_pred             eeeEEEECCCCCEecHHHcCCCEEEEEEecccCCc-chhhhHHHHHhhhhhccc----ceeEEEeeccccccccccchhh
Confidence            589999986 7899999999999999999999998 999999999999999877    89999998762    2347788


Q ss_pred             HHHHHHH------hCCCeEE
Q psy17592        139 VGKYVKE------FSPKFIG  152 (183)
Q Consensus       139 ~~~~~~~------~~~~~~~  152 (183)
                      +++|++.      ++..|+.
T Consensus        79 i~~f~~~~~~~~~~~~~f~~   98 (184)
T d2f8aa1          79 ILNSLKYVRPGGGFEPNFML   98 (184)
T ss_dssp             HHHHHHHTSSCTTCCCSSEE
T ss_pred             hhhhhheecccccccccccc
Confidence            9999874      4566665

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.56  E-value=4e-15  Score=111.67  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             CcccCCCeEEEcCCCC-eeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592         59 KVAIGGKFELVDCNNK-PVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT  135 (183)
Q Consensus        59 ~~~~~p~f~l~d~~G~-~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~  135 (183)
                      .+..+|+|++.+.+|. .++++++ +|||+||+|+ +.||| +|..|+..+++.+.++++.    ++++++||.|    +
T Consensus         4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTp-vCttEl~~f~~~~~eF~~~----~~~vigiS~D----s   74 (219)
T d1xcca_           4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTP-VCTTELAELGKMHEDFLKL----NCKLIGFSCN----S   74 (219)
T ss_dssp             TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCH-HHHHHHHHHHHTHHHHHTT----TEEEEEEESS----C
T ss_pred             CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCc-ccchhHHHHHHhhhhhccc----ceEEEeecCc----c
Confidence            4566799999876433 5898886 8899999999 77888 5999999999999999977    8999999988    7


Q ss_pred             HHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592        136 PELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSAG  174 (183)
Q Consensus       136 ~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~~  174 (183)
                      .+..++|.++.       +.+|+.+.+....   ++++||+.....
T Consensus        75 ~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~---va~~ygv~~~~~  117 (219)
T d1xcca_          75 KESHDKWIEDIKYYGKLNKWEIPIVCDESRE---LANKLKIMDEQE  117 (219)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCCCCEEECTTSH---HHHHHTCEEEEE
T ss_pred             HhHHhHHhhhhHhhcccCCCCcccccccccH---HHHHhCCccccc
Confidence            78888888775       5899999887655   999999987654

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.3e-11  Score=88.09  Aligned_cols=107  Identities=12%  Similarity=0.158  Sum_probs=83.0

Q ss_pred             CCCcccCCCeEEEc-CCCCeeecCcc-CCCEEEEEEE-cCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCe-eEEEEEeCC
Q psy17592         57 LGKVAIGGKFELVD-CNNKPVKSEDF-LGKWALIYFG-FTHCPDICPD-ELEKMAAVVNKIDGQPNVPNI-TPIFISVDP  131 (183)
Q Consensus        57 ~~~~~~~p~f~l~d-~~G~~v~l~~~-~gk~vll~f~-~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v-~~v~Is~dp  131 (183)
                      +..++.+|+|+|.+ .+|+.++++++ +||++||+|+ ..|||. |.. +++...+.+..+.+.    ++ .++.+++| 
T Consensus         3 ikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~-Ct~~~~~~~~~~~~~~~~~----g~~~i~~~s~~-   76 (161)
T d1hd2a_           3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPG-CSKTHLPGFVEQAEALKAK----GVQVVACLSVN-   76 (161)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHH-HHHTHHHHHHHTHHHHHTT----TCCEEEEEESS-
T ss_pred             CCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEecccccc-chhhhhhHHHhhhHHHHHc----CCeEEEEEecC-
Confidence            45677789999986 56899999985 8999999988 778885 965 788899988888876    44 45667776 


Q ss_pred             CCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        132 ERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       132 ~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                         ++..+++|.+.++.  +++++.++...   ++++||+..+...
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~llsD~~~~---~a~~~g~~~~~~~  116 (161)
T d1hd2a_          77 ---DAFVTGEWGRAHKAEGKVRLLADPTGA---FGKETDLLLDDSL  116 (161)
T ss_dssp             ---CHHHHHHHHHHTTCTTTCEEEECTTCH---HHHHHTCBCCSTT
T ss_pred             ---chhhhhhhhhhcccccccccccCCcce---eeeeeeeeecccc
Confidence               66778888888764  57888776555   8999998765543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.20  E-value=8.1e-13  Score=94.89  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             ecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEE
Q psy17592         77 KSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIG  152 (183)
Q Consensus        77 ~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~  152 (183)
                      .+++++|++++++||+||||+ |+.++|.|.++++.++      ++.+..|+.|   ++++.+++|..+.+..++.
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~-C~~~~P~l~~l~~~~~------~~~~~~i~~d---~~~~~~~~~~~~~~~~~p~  113 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPD-CQINLAALDFAQRLQP------NIELAIISKG---RAEDDLRQRLALERIAIPL  113 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHH-HHHHHHHHHHHHHHCT------TEEEEEECHH---HHHHHTTTTTTCSSCCSSE
T ss_pred             HHHHhcCCeEEEEEEeCcCcc-HHHHHHHHHHHHHHCC------CCcEEEEECc---cCHHHHHHHHHhccccccc
Confidence            466788999999999999999 9999999999998754      6788888887   5678888887776654433

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=6.2e-11  Score=79.21  Aligned_cols=47  Identities=21%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+..||++||+||++||++ |+...|.++++.+++.+     .+.++.|..|
T Consensus        20 l~~~~~k~vlv~f~a~wC~~-C~~~~p~~~~l~~~~~~-----~~~~~~i~~d   66 (111)
T d1xwaa_          20 LTKASGKLVVLDFFATWCGP-CKMISPKLVELSTQFAD-----NVVVLKVDVD   66 (111)
T ss_dssp             HHHHTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TEEEEEEETT
T ss_pred             HHhcCCCEEEEEEECCcccC-ccccchhHHHHhhhccc-----ceEEEEEEee
Confidence            44557999999999999998 99999999999998853     5888888887

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.02  E-value=6.9e-10  Score=78.95  Aligned_cols=109  Identities=13%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             CCCcccCCCeEEE----cCCCCeeecCcc-CCCEEEEEEE-cCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         57 LGKVAIGGKFELV----DCNNKPVKSEDF-LGKWALIYFG-FTHCPDICPDE-LEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        57 ~~~~~~~p~f~l~----d~~G~~v~l~~~-~gk~vll~f~-~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      +..++.+|+|+|.    +.+++.++++++ +||+|||+|+ ..++| +|..+ ++...+..+.+.++   ....++.||+
T Consensus         4 l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~-~Ct~e~~~~~~~~~d~~~~~---g~~~v~~isv   79 (162)
T d1tp9a1           4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTP-TCSLKHVPGFIEKAGELKSK---GVTEILCISV   79 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCH-HHHHTHHHHHHHHHHHHHHT---TCCCEEEEES
T ss_pred             CCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccch-hhhhhcchHHHHhhhHHHHc---CCcceeeeec
Confidence            4567778999996    345578999885 9999999988 66777 59765 56666666666654   2467889998


Q ss_pred             CCCCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592        130 DPERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAGPK  176 (183)
Q Consensus       130 dp~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~~~  176 (183)
                      |    ++..+++|.+..+.  .++.+.+....   ++++||+.+.....
T Consensus        80 d----~~~~~~~~~~~~~~~~~~~~lsD~~~~---~~~~~g~~~~~~~~  121 (162)
T d1tp9a1          80 N----DPFVMKAWAKSYPENKHVKFLADGSAT---YTHALGLELDLQEK  121 (162)
T ss_dssp             S----CHHHHHHHHHTCTTCSSEEEEECTTSH---HHHHTTCEEEETTT
T ss_pred             c----chhhhhhhhhhcccccccccccchhhH---HHhhhhhccccccc
Confidence            7    78999999998874  47777776444   99999988876553

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.1e-10  Score=76.24  Aligned_cols=47  Identities=26%  Similarity=0.409  Sum_probs=40.8

Q ss_pred             cCccCCCEEEEEEEcC-------CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         78 SEDFLGKWALIYFGFT-------HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        78 l~~~~gk~vll~f~~t-------~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +++.+||+|+|+|||+       ||++ |+...|.+.++.+.+.+     ++.++.|++|
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~p-Ck~~~P~~~~l~~~~~~-----~~~~~~vdv~   69 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPD-CVQAEPVVREGLKHISE-----GCVFIYCQVG   69 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHH-HHHHHHHHHHHGGGCCT-----TEEEEEEECC
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChh-HHHHHHHHHHHHHhcCC-----ceEEEEEECC
Confidence            3456899999999996       9998 99999999999887643     6999999987

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.89  E-value=1.1e-09  Score=72.12  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=41.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      .+|+++|+||++||++ |....|.+.++..++.+     ++.++.|+.|   +.++..
T Consensus        16 ~~k~vvv~F~a~wC~~-C~~~~~~~~~l~~~~~~-----~~~~~~vd~~---~~~~~~   64 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGP-CRMMAPVLEEFAEAHAD-----KVTVAKLNVD---ENPETT   64 (105)
T ss_dssp             SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT-----TCEEEEEETT---TCHHHH
T ss_pred             CCCcEEEEEECCCCCC-cccccchhhhhhhhcCC-----ceEEEEEECC---CCcccH
Confidence            4689999999999998 99999999999998864     5899999988   344443

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.85  E-value=2.2e-09  Score=70.85  Aligned_cols=51  Identities=12%  Similarity=0.243  Sum_probs=41.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .+|++||+||++||++ |....|.+.++..++..     ++.++.|.+|   +.++..++
T Consensus        18 s~kpvlv~F~a~wC~~-C~~~~p~~~~~~~~~~~-----~~~~~~vd~d---~~~~l~~~   68 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGP-CRIIAPVVDEIAGEYKD-----KLKCVKLNTD---ESPNVASE   68 (107)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT---TCHHHHHH
T ss_pred             CCCcEEEEEECCCCCC-ccccChHHHHHHHhhcc-----cceEEEEecc---cchhHHHH
Confidence            4689999999999998 99999999999888754     5788999888   34544433

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.85  E-value=2.8e-09  Score=71.20  Aligned_cols=51  Identities=22%  Similarity=0.387  Sum_probs=42.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .+|+|||+||++||++ |+...|.+.++.+++.      ++.++.|..|   +.++..++|
T Consensus        25 ~~k~vvv~F~a~wC~~-C~~~~p~~~~~~~~~~------~~~~~~vd~d---~~~~l~~~~   75 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPP-CKMIAPIFAELAKKFP------NVTFLKVDVD---ELKAVAEEW   75 (113)
T ss_dssp             SSSEEEEEEECSSCHH-HHHHHHHHHHHHHHCS------SEEEEEEETT---TCHHHHHHH
T ss_pred             CCCEEEEEEEcCcccc-chhhhhhhhhhhccCC------CceEEeeeee---ccccccccC
Confidence            4689999999999998 9999999999998763      6788888887   455555544

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.84  E-value=2.2e-09  Score=71.68  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=43.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      .+|+++|+||++||++ |....|.+.++.+++..     ++.++.|++|   +.++..++|
T Consensus        23 ~~k~vvv~f~a~wC~~-C~~~~p~~~~l~~~~~~-----~v~~~~vd~d---~~~~l~~~~   74 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGP-CKMIAPLFETLSNDYAG-----KVIFLKVDVD---AVAAVAEAA   74 (112)
T ss_dssp             HTCCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETT---TTHHHHHHH
T ss_pred             cCCeEEEEEEcCCcCC-Ccccchhhhhhhhcccc-----eEEEEEeecc---ccccccccc
Confidence            4799999999999998 99999999999998753     5889999887   455544443

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.84  E-value=3.9e-09  Score=69.75  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      +|+++|+||++||++ |+...|.+.++..++.+     .+.++.|.+|   +.++..++
T Consensus        20 ~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~d---~~~~l~~~   69 (108)
T d1thxa_          20 EQPVLVYFWASWCGP-CQLMSPLINLAANTYSD-----RLKVVKLEID---PNPTTVKK   69 (108)
T ss_dssp             SSCEEEEEECTTCTT-HHHHHHHHHHHHHHTTT-----TCEEEEEEST---TCHHHHHH
T ss_pred             CCcEEEEEECCCCCC-ccccchHHHHHHHhcCC-----cceeceeccc---ccHHHHHH
Confidence            589999999999998 99999999999988753     5889999888   45554433

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.6e-09  Score=72.55  Aligned_cols=60  Identities=12%  Similarity=0.112  Sum_probs=42.5

Q ss_pred             cCccCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         78 SEDFLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.+.+||++||+||++||++ |+...|.+   .++.+.+.      ++.++.+.++.   ..+.-++++++++
T Consensus        17 l~~~~gK~vlv~F~a~wC~~-C~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~---~~~~~~~l~~~~~   79 (117)
T d2fwha1          17 LVEAKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQKALA------DTVLLQANVTA---NDAQDVALLKHLN   79 (117)
T ss_dssp             HHHHTTSCEEEEEECTTCHH-HHHHHHHTTTSHHHHHHTT------TSEEEEEECTT---CCHHHHHHHHHTT
T ss_pred             HHHcCCCeEEEEEecccCCc-ccccchhHHhHHHHHHhcc------ceEEEeccccc---chhHHHHHHhhhe
Confidence            45568999999999999998 99999987   44444432      56666666652   2345556777775

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=2.5e-09  Score=71.57  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK  141 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~  141 (183)
                      .++++||+||++||++ |+...|.+.++.+.+.      ++.++.|..|   +.++..++
T Consensus        27 ~~~~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~------~~~~~~vd~~---~~~~l~~~   76 (114)
T d1xfla_          27 SKTLVVVDFTASWCGP-CRFIAPFFADLAKKLP------NVLFLKVDTD---ELKSVASD   76 (114)
T ss_dssp             TTCEEEEEEECTTCHH-HHHHHHHHHHHHHHCS------SEEEEEEETT---TSHHHHHH
T ss_pred             cCCeEEEEEEcCCCCC-ccccccchhhhccccc------ccceeEEEee---eceeeccc
Confidence            4799999999999998 9999999999998763      6788888777   45544433

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=4.2e-09  Score=74.87  Aligned_cols=106  Identities=9%  Similarity=-0.021  Sum_probs=71.0

Q ss_pred             cccCCCeEEEcCCC---CeeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHH-hhCCCCCCCeeEEEEEeCCCC
Q psy17592         60 VAIGGKFELVDCNN---KPVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNK-IDGQPNVPNITPIFISVDPER  133 (183)
Q Consensus        60 ~~~~p~f~l~d~~G---~~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~-~~~~~~~~~v~~v~Is~dp~~  133 (183)
                      +..+|+|+++..+|   +.++++++ +||+|||+|. +.+.| +|..++..+...+.. ...+  . .-.++.++.+   
T Consensus         4 Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp-~Ct~e~~~~~~~~~~~~~~~--~-~~~vv~~~s~---   76 (163)
T d1nm3a2           4 GKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTP-TCSSSHLPRYNELAPVFKKY--G-VDDILVVSVN---   76 (163)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCH-HHHHTHHHHHHHHHHHHHHT--T-CCEEEEEESS---
T ss_pred             CCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccc-cchhhhhhhhhhcchhhhhh--c-ccceeeeecC---
Confidence            45569999998766   47889996 9999888876 56666 599998776655432 2222  1 2244555554   


Q ss_pred             CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        134 DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                      |.....+.+.+....++..+.+....   ++++||+......
T Consensus        77 d~~~~~a~~~~~~~~~~~llsD~~~~---~~~~~g~~~~~~~  115 (163)
T d1nm3a2          77 DTFVMNAWKEDEKSENISFIPDGNGE---FTEGMGMLVGKED  115 (163)
T ss_dssp             CHHHHHHHHHHTTCTTSEEEECTTSH---HHHHTTCEEECTT
T ss_pred             CHHHHHHHhhhhccCceeeeccCChH---HHHHhhhhccccc
Confidence            34444444444446788888876555   8899998776554

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.2e-09  Score=70.75  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=39.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      .+|+++|+||++||++ |+...|.+.++.+++.      ++.++-|..|   +.++..+
T Consensus        19 ~~k~vvv~F~a~wC~~-C~~~~p~~~~l~~~~~------~~~~~~vd~d---~~~~~~~   67 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGP-CKMIKPFFHSLSEKYS------NVIFLEVDVD---DCQDVAS   67 (105)
T ss_dssp             TTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT---TCHHHHH
T ss_pred             CCCEEEEEEEcCCccc-hhhhhhhhhhhccccc------cceeeecccc---cCHhHHH
Confidence            4689999999999998 9999999999988764      5667778777   4555443

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.80  E-value=1.9e-09  Score=72.08  Aligned_cols=48  Identities=15%  Similarity=0.291  Sum_probs=40.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      .+++++|+||++||++ |+...|.|.++.+++.      ++.++.|+.|   +.++..
T Consensus        25 ~~~~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~------~v~~~~vd~d---~~~~l~   72 (113)
T d1r26a_          25 EDILTVAWFTAVWCGP-CKTIERPMEKIAYEFP------TVKFAKVDAD---NNSEIV   72 (113)
T ss_dssp             SSSCEEEEEECTTCHH-HHHTHHHHHHHHHHCT------TSEEEEEETT---TCHHHH
T ss_pred             CCCeEEEEEECCCCcc-chhhceeccccccccc------cccccccccc---cchhhH
Confidence            4689999999999998 9999999999998863      7899999988   455433

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=3e-09  Score=70.27  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++||++ |+...|.+.++..++..     ++.++.|.+|
T Consensus        19 ~~~~v~v~F~a~wC~~-C~~~~~~~~~~a~~~~~-----~~~~~~vd~d   61 (108)
T d2trxa_          19 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG-----KLTVAKLNID   61 (108)
T ss_dssp             CSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TEEEEEEETT
T ss_pred             CCCcEEEEEECCCCCC-ccccCcHHHHHHHHhhc-----ceeeeecccc
Confidence            3689999999999998 99999999999887643     6888888888

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4e-09  Score=69.85  Aligned_cols=48  Identities=15%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      .+|.++|+||++||++ |....|.+.++.+++.      ++.++.|.+|   +.++..
T Consensus        20 ~~klvvv~F~a~wC~~-Ck~~~p~~~~la~~~~------~~~f~~vd~d---~~~~l~   67 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGP-CLRIAPAFSSMSNKYP------QAVFLEVDVH---QCQGTA   67 (107)
T ss_dssp             TTSCEEEEEECSSCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT---TSHHHH
T ss_pred             CCCEEEEEEECCCCCC-ccccchhhhccccccc------cccccccccc---cchhhh
Confidence            4789999999999998 9999999999998764      6788888887   444443

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.75  E-value=5.8e-09  Score=68.36  Aligned_cols=48  Identities=15%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV  139 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~  139 (183)
                      +++++|+||++||++ |....|.+.++.+++..     .+.++.|+.|   ++++..
T Consensus        17 ~~~vlv~F~a~wC~~-C~~~~~~~~~l~~~~~~-----~~~~~~v~~d---~~~~l~   64 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGP-CKLIAPVIDELAKEYSG-----KIAVYKLNTD---EAPGIA   64 (104)
T ss_dssp             SSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT-----TCEEEEEETT---TCHHHH
T ss_pred             CCcEEEEEEcCccCC-ccccCchhHHHHHhhcC-----ccceeEEecc---cchhhh
Confidence            688999999999998 99999999999998754     4788888888   455433

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.73  E-value=1.5e-08  Score=66.65  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=37.0

Q ss_pred             CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+..++++|++||++|||+ |+...|.+.++........ ...+.++.|..+
T Consensus        11 ~~~~~~v~i~~F~a~wC~~-C~~~~p~~~~la~~~~~~~-~~~v~~~~id~~   60 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPY-CPLAVRMAHKFAIENTKAG-KGKILGDMVEAI   60 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTT-HHHHHHHHHHHHHHHHHTT-CCCEEEEEEEGG
T ss_pred             HhcCCCeEEEEEEcCcccc-chhhChhHHhhhhhhhhcc-CCcEEEEEeccc
Confidence            4445667788899999998 9999999999976533221 346777777766

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.71  E-value=1.1e-08  Score=68.15  Aligned_cols=42  Identities=10%  Similarity=0.106  Sum_probs=36.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+|+++|+||++||++ |....|.+.++.+++.      ++.++.|..|
T Consensus        24 ~~k~vvv~f~a~wC~~-C~~~~p~~~~l~~~~~------~v~~~~vd~~   65 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGP-CKAMAPKYEKLAEEYL------DVIFLKLDCN   65 (112)
T ss_dssp             TTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEECS
T ss_pred             CCCEEEEEEEcCCCcc-hHHHHHHHhhhccccc------cceeeccccc
Confidence            3489999999999998 9999999999999864      5778888776

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.4e-08  Score=70.12  Aligned_cols=44  Identities=16%  Similarity=0.290  Sum_probs=39.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+|+|||+||++||++ |....|.|.++.+++.+     .+.++-|.+|.
T Consensus        21 ~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~~~-----~v~~~~VDvd~   64 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPT-CMKMDEVLYSIAEKVKN-----FAVIYLVDITE   64 (137)
T ss_dssp             SSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHTT-----TEEEEEEETTT
T ss_pred             CCCEEEEEEECCCCcc-chhcChHHHHHHHHhhc-----cceEEEeeccc
Confidence            4689999999999998 99999999999999864     58899998883

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.65  E-value=1.7e-08  Score=66.03  Aligned_cols=49  Identities=14%  Similarity=0.218  Sum_probs=40.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG  140 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~  140 (183)
                      .+++++|+||++||++ |....|.+.++.+++.      ++.++-+..|   +.++..+
T Consensus        17 ~~~~vvv~F~a~wC~~-C~~~~~~~~~l~~~~~------~~~~~~vd~d---~~~~~~~   65 (103)
T d1syra_          17 QNELVIVDFFAEWCGP-CKRIAPFYEECSKTYT------KMVFIKVDVD---EVSEVTE   65 (103)
T ss_dssp             HCSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT------TSEEEEEETT---TTHHHHH
T ss_pred             CCCcEEEEEeCCcccC-cccccccchhhhhccc------ceEEEeeccc---cCcceee
Confidence            4689999999999998 9999999999999864      5678888887   4554433

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.65  E-value=2.2e-08  Score=63.12  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=36.8

Q ss_pred             CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      +|+.|++||++||++ |+...|.+.++.+++..     .+.++.+..|.
T Consensus         2 ~kv~v~~F~a~wC~~-C~~~~p~~~~~~~~~~~-----~~~~~~~~~d~   44 (85)
T d1fo5a_           2 SKVKIELFTSPMCPH-CPAAKRVVEEVANEMPD-----AVEVEYINVME   44 (85)
T ss_dssp             CCEEEEEEECCCSSC-CCTHHHHHHHHHHHCSS-----SEEEEEEESSS
T ss_pred             CceEEEEEECCCCcC-hHhhhhhcccccccccc-----ccccccccccc
Confidence            588999999999998 99999999999988653     57777787773

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.65  E-value=1.3e-08  Score=67.92  Aligned_cols=57  Identities=16%  Similarity=0.313  Sum_probs=45.5

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .++.++|+||++|||+ |+...|.+.++.++++.       .+..|.+|. .+..+..+++.++++
T Consensus        25 ~~~~~~v~f~~~~C~~-C~~~~p~l~~~~~~~~~-------~v~~v~~~~-~~~~~~~~~~~~~~~   81 (115)
T d1zmaa1          25 KKETATFFIGRKTCPY-CRKFAGTLSGVVAETKA-------HIYFINSEE-PSQLNDLQAFRSRYG   81 (115)
T ss_dssp             TTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHCC-------CCEEEETTC-GGGHHHHHHHHHHHT
T ss_pred             cCCCEEEEEcCCCCcc-HHHHHHHHHHHHHHhhh-------hhhhheeec-ccccccccccccccc
Confidence            4789999999999998 99999999999988742       334555552 246778888999988

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.55  E-value=7e-08  Score=62.34  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=42.0

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      ++.|.+.++.|+++|||+ |+...|.++++....      +++.+..|..|   +.++.+.+|
T Consensus        12 ~l~~~~~i~~F~s~~C~~-C~~~~p~~~~~a~~~------~~i~~~~vd~~---~~~~l~~~~   64 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHN-CPDVVQALNLMAVLN------PRIKHTAIDGG---TFQNEITER   64 (96)
T ss_dssp             HCCSCEEEEEEECTTCSS-HHHHHHHHHHHHHHC------TTEEEEEEETT---TCHHHHHHT
T ss_pred             hcCCCeEEEEEECCCCcc-hHHHHHHHHHHHHhC------CceEEEEEecc---cchHHHhhc
Confidence            456888899999999998 999999999998763      37898888887   455544433

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.2e-08  Score=65.23  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=40.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      .+|.+||.||++||++ |+...|.+.++.+.+...  ...+.++-|..|.
T Consensus        23 ~~k~vlV~Fya~wC~~-C~~~~p~~~~~~~~~~~~--~~~v~~~~vd~~~   69 (120)
T d1meka_          23 AHKYLLVEFYAPWCGH-CKALAPEYAKAAGKLKAE--GSEIRLAKVDATE   69 (120)
T ss_dssp             HCSEEEEEEECSSCST-TSTTHHHHHHHHHTTTTT--CCCCBCEEEETTT
T ss_pred             cCCcEEEEEECCCcCC-ccccchhhhhhccccccc--ccceeeecccccc
Confidence            4799999999999998 999999999999998755  4467777787773

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=9e-08  Score=64.12  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=39.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .++.++|.||++||++ |....|.+.++.+.+.+.    ++.|..|+.|
T Consensus        26 ~~~~~lV~fya~wC~~-C~~~~~~~~~la~~~~~~----~v~~~~vd~~   69 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGH-CKNMAPEYVKAAETLVEK----NITLAQIDCT   69 (119)
T ss_dssp             TCSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----TCEEEEEETT
T ss_pred             cCCeEEEEEECCccCc-ccccchhhhhhhhhhccc----ceeeeeeecc
Confidence            4689999999999998 999999999999988654    6888889887

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.49  E-value=1e-08  Score=69.11  Aligned_cols=54  Identities=9%  Similarity=0.064  Sum_probs=37.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .+++++++||++|||+ |+...|.|.++.+++.+.    ++.++.|..|       .-.+.+++++
T Consensus        29 ~~~~vll~f~a~wCp~-C~~~~pvl~eL~~~~~~~----~~~~~~Vd~d-------~~~~l~~~~~   82 (119)
T d2es7a1          29 GDGVILLSSDPRRTPE-VSDNPVMIAELLREFPQF----DWQVAVADLE-------QSEAIGDRFN   82 (119)
T ss_dssp             CSEEEEECCCSCC-----CCHHHHHHHHHHTCTTS----CCEEEEECHH-------HHHHHHHTTT
T ss_pred             CCcEEEEeecCCCCcc-HHHHHHHHHHHHHhcCCC----ceEEEEEECC-------CCHHHHHhcC
Confidence            4578999999999998 999999999999998643    4666666544       3344556666

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=7.5e-09  Score=71.09  Aligned_cols=44  Identities=7%  Similarity=0.090  Sum_probs=35.6

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+++|+|.||++|||+ |....|.|.++.+++.+.    .+.+.-|..|
T Consensus        35 ~~~vVll~f~a~wCp~-C~~~~pvl~ela~~~~~~----~~~~a~Vd~d   78 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPE-VSDNPVMIGELLREFPDY----TWQVAIADLE   78 (132)
T ss_dssp             SEEEEEECSCCSCCSS-SSCCTHHHHHHHTTCTTS----CEEEEEECHH
T ss_pred             CCcEEEEEeeCCCChh-HHHHHHHHHHHHHHccCC----cceeEEEEec
Confidence            3478999999999998 999999999999887643    4555566554

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.42  E-value=2.9e-08  Score=62.66  Aligned_cols=39  Identities=21%  Similarity=0.370  Sum_probs=34.0

Q ss_pred             EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+..||++||++ |+...|.++++.+++.+     ++.++.|+.|
T Consensus         4 ~v~~F~a~wC~~-C~~~~p~~~~l~~~~~~-----~v~~~~vd~d   42 (85)
T d1nhoa_           4 NIEVFTSPTCPY-CPMAIEVVDEAKKEFGD-----KIDVEKIDIM   42 (85)
T ss_dssp             CEEEESCSSSCC-STTHHHHHHHHHHHHCS-----SCCEEEECTT
T ss_pred             EEEEEECCCCcc-hHHHHHHHhhhcccccc-----cccccccccc
Confidence            456699999998 99999999999999853     5888889887

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.5e-08  Score=69.40  Aligned_cols=45  Identities=11%  Similarity=0.155  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         80 DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        80 ~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .-.||++||+||++||++ |+.+.|.+.+..+..+.     ...||.|.+|
T Consensus        22 ~~~~Kpvlv~F~a~wC~~-C~~~~~~~~~~~~~~~~-----~~~fv~v~vd   66 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGA-CKALKPKFAESTEISEL-----SHNFVMVNLE   66 (135)
T ss_dssp             HHHTCCEEEEEECTTCHH-HHHHHHHHHTCHHHHHH-----HTTSEEEEEE
T ss_pred             HHcCCcEEEEEEecCCCC-ceecchhhhhhHHHHHh-----cCCcEEEeCC
Confidence            346999999999999998 99999998776543332     1235566665

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.34  E-value=5.6e-07  Score=59.53  Aligned_cols=34  Identities=21%  Similarity=0.119  Sum_probs=31.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ  116 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~  116 (183)
                      .+|++||.||++||++ |+...|.+.++.+.+...
T Consensus        19 ~~k~vlV~fya~wC~~-Ck~~~p~~~~la~~~~~~   52 (116)
T d2djja1          19 DTKDVLIEFYAPWCGH-CKALAPKYEELGALYAKS   52 (116)
T ss_dssp             TTSCEEEEEECSSCTT-HHHHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEEeccccc-ccccchHHHHHHHHHhcc
Confidence            4689999999999998 999999999999998765

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.30  E-value=1.4e-06  Score=62.18  Aligned_cols=91  Identities=8%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             CeeecCcc-CCCEEEEEEEcCCCCCCcHHH-HHHHHHHHHHh-hCCCCCCCe-eEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592         74 KPVKSEDF-LGKWALIYFGFTHCPDICPDE-LEKMAAVVNKI-DGQPNVPNI-TPIFISVDPERDTPELVGKYVKEFSPK  149 (183)
Q Consensus        74 ~~v~l~~~-~gk~vll~f~~t~C~~~C~~~-~~~l~~l~~~~-~~~~~~~~v-~~v~Is~dp~~d~~~~~~~~~~~~~~~  149 (183)
                      +.++++++ +||.|||.+..---.+.|..+ +|.+.+-++++ +++    ++ +++.||+|    ++-.+++|.+.++.+
T Consensus        32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~----gvd~I~~iSvn----D~fv~~aW~~~~~~~  103 (179)
T d1xiya1          32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN----NFDDIYCITNN----DIYVLKSWFKSMDIK  103 (179)
T ss_dssp             EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS----CCSEEEEEESS----CHHHHHHHHHHTTCC
T ss_pred             eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc----CCceEEEEecC----CHHHHHHHHhhcCcc
Confidence            35677775 898877776544333359775 89999999988 444    34 79999997    789999999999875


Q ss_pred             e-EEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592        150 F-IGLTGTVEQVAAACKAYRVYFSAGP  175 (183)
Q Consensus       150 ~-~~l~~~~~~~~~~~~~~gv~~~~~~  175 (183)
                      . .++.+...+   ++++||+.++...
T Consensus       104 ~I~~lsD~~g~---f~k~lg~~~d~~~  127 (179)
T d1xiya1         104 KIKYISDGNSS---FTDSMNMLVDKSN  127 (179)
T ss_dssp             SSEEEECTTSH---HHHHTTCEEECGG
T ss_pred             eEEEeeCCchH---HHHhhhccccccc
Confidence            5 677765544   9999999887544

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.7e-07  Score=64.47  Aligned_cols=34  Identities=12%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ  116 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~  116 (183)
                      .++.++|.||++||++ |+...|.+.++.+.+.+.
T Consensus        29 ~~k~vlV~F~a~wC~~-C~~~~p~~~~la~~~~~~   62 (140)
T d2b5ea1          29 PKKDVLVLYYAPWCGH-CKRLAPTYQELADTYANA   62 (140)
T ss_dssp             TTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeccCcc-cchhHHHHHHHHHHHhcc
Confidence            3688999999999998 999999999999988643

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.06  E-value=3.2e-06  Score=56.52  Aligned_cols=44  Identities=9%  Similarity=0.079  Sum_probs=36.0

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.|.+||.|+++||++ |+.  |.+.++.+.+.+.  ..++.+.-|.++
T Consensus        18 ~~~~~lV~Fya~wC~~-ck~--p~f~kla~~~~~~--~~~v~ia~Vd~~   61 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYG-EKH--EAFTAFSKSAHKA--TKDLLIATVGVK   61 (122)
T ss_dssp             TSSEEEEEEEESSCCS-HHH--HHHHHHHHHHHHH--CSSEEEEEEEEC
T ss_pred             cCCcEEEEEECCCCCc-ccC--HHHHHHHHHHHHh--CCCeEEEecccc
Confidence            4589999999999998 994  8999999887654  347888888776

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=8.1e-05  Score=51.18  Aligned_cols=56  Identities=20%  Similarity=0.228  Sum_probs=36.8

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      -++|++||+|++.||++ |+..-...   .++.+.+++     ++.++.|+.|    + +..+++.+.++
T Consensus        40 ~~~K~llV~~~~~~C~~-C~~m~~~v~~d~~V~~~l~~-----~fV~~~v~~~----~-~e~~~~~~~y~   98 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFA-CQCLNRDVWSNEAVKNIIRE-----HFIFWQVYHD----S-EEGQRYIQFYK   98 (147)
T ss_dssp             HHTCEEEEEEECSCTTT-HHHHHHHTTTCHHHHHHHHH-----TEEEEEEESS----S-HHHHHHHHHHT
T ss_pred             HcCCcEEEEEecCCCCc-hHHHHHhccCCHHHHHHHhh-----heeEeeeccc----c-hhhhhhhhhee
Confidence            35899999999999998 98764433   333333322     5666666655    2 34566777775

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=1.8e-05  Score=58.09  Aligned_cols=42  Identities=5%  Similarity=-0.063  Sum_probs=36.7

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++.+|||+||++||++ |....+.|.++..++.      ++.|+-|..+
T Consensus       119 ~~~~Vvvhfy~~~~~~-C~~~~~~l~~lA~~~~------~vkF~ki~~~  160 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRG-CDALNSSLECLAAEYP------MVKFCKIRAS  160 (217)
T ss_dssp             TTCEEEEEEECTTSTT-HHHHHHHHHHHHTTCT------TSEEEEEEHH
T ss_pred             CCCeEEEEEEcCCCCC-hhhhhhhHHHHhhhcc------cceEEEEccc
Confidence            4569999999999998 9999999999998764      6899888765

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.34  E-value=0.00021  Score=47.26  Aligned_cols=43  Identities=2%  Similarity=-0.002  Sum_probs=28.1

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHH-------HHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEK-------MAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~-------l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.++|.|+++||+. | ..+|.       +..+.+.++..    ++.+.-|+.+
T Consensus        27 ~~~~~~V~FyapwC~~-~-~~~~~~~~~~~~~~~~a~~~~~~----~v~~a~Vd~~   76 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDD-K-ASQRQFEMEELILELAAQVLEDK----GVGFGLVDSE   76 (124)
T ss_dssp             HCSEEEEEEECCCCSS-H-HHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEETT
T ss_pred             hCCeEEEEEECCCccc-h-hhhhHHHHHHHHHHHHHHHhccC----CeEEEEEEee
Confidence            4678999999999984 4 33333       33333333332    6888888876

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=1.6e-05  Score=51.22  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=33.8

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY  142 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~  142 (183)
                      ..-++|+.||..||++ |....+.|.++..+         ..+..|.+|.. ++++..++|
T Consensus        14 ~~~p~i~lft~~~C~~-C~~a~~~L~~~~~~---------~~~~~v~vd~~-~~~~l~~~y   63 (100)
T d1wjka_          14 RALPVLTLFTKAPCPL-CDEAKEVLQPYKDR---------FILQEVDITLP-ENSTWYERY   63 (100)
T ss_dssp             CCCCEEEEEECSSCHH-HHHHHHHTSTTSSS---------SEEEEEETTSS-TTHHHHHHS
T ss_pred             CCCCEEEEEECCCCCC-hHHHHHHHHHhhhh---------cceEEEecccc-cCHHHHHHh
Confidence            3467889999999998 99988888887543         33344555643 344544444

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.76  E-value=0.0086  Score=40.54  Aligned_cols=31  Identities=13%  Similarity=0.059  Sum_probs=27.1

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHH
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNK  112 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~  112 (183)
                      -.+|.+|+.|.-..||. |+...+.+.++.+.
T Consensus        24 ~~ak~~I~~FsD~~CPy-C~~~~~~l~~l~~~   54 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHY-CHLLHQQLKEYNDL   54 (150)
T ss_dssp             TTCSEEEEEEECTTCHH-HHHHHTTHHHHHHT
T ss_pred             CCCCEEEEEEECCCCHH-HHHHhHHHHHHhcc
Confidence            35789999999999998 99999999988753

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.47  E-value=0.027  Score=38.19  Aligned_cols=51  Identities=16%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      +.+.+-.+++.|+.|....||+ |....+.+.++.+++.+.   ..+.++.+...
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~-C~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   67 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPY-CRKWFEESEELLAQSVKS---GKVERIIKLFD   67 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHHT---TSEEEEEEECC
T ss_pred             CeecCCCCCEEEEEEECCCCHh-HHHHHHHHhhhhhhhccc---cceeeeecccc
Confidence            4456666788899999999998 999999999999888764   25777766554

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.97  E-value=0.05  Score=35.08  Aligned_cols=32  Identities=9%  Similarity=0.114  Sum_probs=26.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ  116 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~  116 (183)
                      +++.+||.|.+.||.. |..  |..+++.+.+.+.
T Consensus        20 ~~~~~lV~F~~~wc~~-~~~--~~~~~la~~~~~~   51 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYG-EKQ--DEFKRLAENSASS   51 (122)
T ss_dssp             GSSEEEEEEECSSCCT-TTT--HHHHHHHHHGGGC
T ss_pred             hCCeEEEEEecCCcCc-ccC--HHHHHHHHHHHHH
Confidence            5689999999999985 754  7788888888764

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=94.95  E-value=0.02  Score=39.10  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=29.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG  115 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~  115 (183)
                      .++++|+.|....||. |....+.+.++.+++.+
T Consensus        17 ~~~~~Ivef~d~~Cp~-C~~~~~~~~~l~~~~~~   49 (181)
T d1beda_          17 SSSPVVSEFFSFYCPH-CNTFEPIIAQLKQQLPE   49 (181)
T ss_dssp             CSSCEEEEEECTTCHH-HHHHHHHHHHHHHTSCT
T ss_pred             CCCCEEEEEECCCCcc-chhhhhhhhhHhhhccc
Confidence            5788999999999998 99999999999988754

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.06  Score=36.79  Aligned_cols=48  Identities=13%  Similarity=0.090  Sum_probs=36.1

Q ss_pred             eeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         75 PVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        75 ~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      .+....-..+.+|+.|....||. |+...+.+.++.++.       .++++.+.+.
T Consensus        28 ~i~~G~~~a~~tv~vF~D~~CP~-C~~~~~~l~~l~~~~-------~v~v~~~~~~   75 (169)
T d1v58a1          28 WLLDGKKDAPVIVYVFADPFCPY-CKQFWQQARPWVDSG-------KVQLRTLLVG   75 (169)
T ss_dssp             CEEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHTT-------SEEEEEEECC
T ss_pred             CceeCCCCCCEEEEEEECCCCcc-hHHHHHHHHHHHhcc-------ceeEEEEecc
Confidence            34444445578899999999998 999999998887542       5777777554

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.028  Score=38.04  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             ecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592         77 KSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        77 ~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      ....-.+|.+|+.|.-..||+ |+...+.+.++.+.        ++.++.+.+
T Consensus        20 v~g~~~ak~tIv~FsD~~Cpy-C~~~~~~l~~~~~~--------~~~~~~~~~   63 (156)
T d1eeja1          20 VYKAPQEKHVITVFTDITCGY-CHKLHEQMADYNAL--------GITVRYLAF   63 (156)
T ss_dssp             EECCTTCCEEEEEEECTTCHH-HHHHHTTHHHHHHT--------TEEEEEEEC
T ss_pred             eecCCCCCEEEEEEeCCCCHH-HHHHHHHHHHhhcc--------CceEEEEec
Confidence            333335789999999999998 99999999988642        455555543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.025  Score=38.97  Aligned_cols=47  Identities=17%  Similarity=0.125  Sum_probs=34.7

Q ss_pred             cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ..++++|+.|....||. |....+.|..+.+.....  ...+.++...+.
T Consensus        16 ~~~~~~VvEffdy~Cp~-C~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~   62 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPH-CYQFEEVLHISDNVKKKL--PEGVKMTKYHVN   62 (188)
T ss_dssp             CTTCCSEEEEECTTCHH-HHHHHHTTCHHHHHHTTS--CTTCCEEEEECS
T ss_pred             CCCCCEEEEEECCCChh-hHHHHHHHHHHHHHhhcc--CCceEEEEEecC
Confidence            46788899999999997 999998887666544433  345677777654

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=91.90  E-value=0.11  Score=30.28  Aligned_cols=45  Identities=9%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      ++-|..++||. |......|.+.           ++.+..+.+|   +++ ...++.+..|
T Consensus         3 v~iYt~~~C~~-C~~ak~~L~~~-----------~i~~~~~~i~---~~~-~~~~~~~~~g   47 (74)
T d1r7ha_           3 ITLYTKPACVQ-CTATKKALDRA-----------GLAYNTVDIS---LDD-EARDYVMALG   47 (74)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEETT---TCH-HHHHHHHHTT
T ss_pred             EEEEeCCCChh-HHHHHHHHHHc-----------CCceEEEEcc---CCH-HHHHHHHHhC
Confidence            45678899998 99976666542           6777788887   233 4445566665

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=91.41  E-value=0.12  Score=30.74  Aligned_cols=45  Identities=11%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      .-|.-+|||. |...-..|.+.           ++.+..+.+|.   +++....+.+..|
T Consensus         4 ~iys~~~Cp~-C~~ak~~L~~~-----------~i~y~~~di~~---~~~~~~~~~~~~g   48 (82)
T d1fova_           4 EIYTKETCPY-CHRAKALLSSK-----------GVSFQELPIDG---NAAKREEMIKRSG   48 (82)
T ss_dssp             EEEECSSCHH-HHHHHHHHHHH-----------TCCCEEEECTT---CSHHHHHHHHHHS
T ss_pred             EEEeCCCCHh-HHHHHHHHHHc-----------CCCeEEEeccc---hHHHHHHHHHHhC
Confidence            4566899998 99866555443           56777777773   2333334444444

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.14  Score=29.91  Aligned_cols=45  Identities=18%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS  147 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~  147 (183)
                      +.-|..+|||. |......|.+.           ++.+..+.+|   ++++ ..++++..|
T Consensus         3 i~iYs~~~C~~-C~~ak~~L~~~-----------~i~y~~~~i~---~~~~-~~~~~~~~g   47 (76)
T d1h75a_           3 ITIYTRNDCVQ-CHATKRAMENR-----------GFDFEMINVD---RVPE-AAEALRAQG   47 (76)
T ss_dssp             EEEEECTTCHH-HHHHHHHHHHT-----------TCCCEEEETT---TCHH-HHHHHHHTT
T ss_pred             EEEEeCCCCcc-HHHHHHHHHhc-----------CceeEEEeec---CCHH-HHHHHHhcC
Confidence            45678899998 99866666443           6777778887   3344 344455555

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=90.25  E-value=0.065  Score=32.27  Aligned_cols=37  Identities=19%  Similarity=0.474  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ++-|.-++||. |...-..|.++..++.      ++.+.-+.++
T Consensus         3 vviysk~~Cp~-C~~aK~ll~~~~~~~~------~i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPY-CVRAKDLAEKLSNERD------DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTH-HHHHHHHHHHHHHHHS------SCEEEEECHH
T ss_pred             EEEEeCCCCHh-HHHHHHHHHHcCCCCC------CceEEEEecC
Confidence            45677899998 9998888888877654      5777777665

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.081  Score=37.17  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             CCCEEEEEEEcCCCCCCcHHHHHHHH---HHHHHhhCCCCCCCeeEEEEEe
Q psy17592         82 LGKWALIYFGFTHCPDICPDELEKMA---AVVNKIDGQPNVPNITPIFISV  129 (183)
Q Consensus        82 ~gk~vll~f~~t~C~~~C~~~~~~l~---~l~~~~~~~~~~~~v~~v~Is~  129 (183)
                      .+++.|+.|+..+||. |....|.|.   ++.+.+.     +++.++.+.+
T Consensus       112 ~~~~~VvEffsy~Cp~-C~~~e~~l~~~~~~~~~~~-----~~v~~~~~~~  156 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPH-CYQFEEVLHISDNVKKKLP-----EGVKMTKYHV  156 (195)
T ss_dssp             TTCCSEEEEECTTCHH-HHHHHHTSCHHHHHTTSSC-----TTCCEEEEEC
T ss_pred             CCCceEEEEEecCCcc-ccccchhhhHHHHHHhhcC-----CCcEEEEEec
Confidence            4788888888899998 999998776   4444443     3566666554

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.37  E-value=0.11  Score=32.66  Aligned_cols=50  Identities=14%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF  146 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~  146 (183)
                      ++-|..+|||. |...-..|.++    .-+  ...+.++-+..+  . +.+.+++++++.
T Consensus        14 Vviysk~~Cp~-C~~ak~ll~~~----~~~--~~~~~~~e~d~~--~-d~~~~~~~l~~~   63 (105)
T d1ktea_          14 VVVFIKPTCPF-CRKTQELLSQL----PFK--EGLLEFVDITAT--S-DTNEIQDYLQQL   63 (105)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHS----CBC--TTSEEEEEGGGS--T-THHHHHHHHHHH
T ss_pred             EEEEECCCCch-HHHHHHHHHHh----CCc--cceeeeeecccc--c-ccHHHHHHHhhc
Confidence            44677899998 99966666553    211  123444444444  2 356677766664

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=86.83  E-value=0.46  Score=27.33  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592         87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP  131 (183)
Q Consensus        87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp  131 (183)
                      |+-|.-++||. |......|.+.           ++.+..+.+|.
T Consensus         7 I~iYs~~~C~~-C~~ak~lL~~~-----------~i~~~~~~v~~   39 (74)
T d1nm3a1           7 ISIFTKPGCPF-CAKAKQLLHDK-----------GLSFEEIILGH   39 (74)
T ss_dssp             EEEEECSSCHH-HHHHHHHHHHH-----------TCCCEEEETTT
T ss_pred             EEEEECCCCHH-HHHHHHHHHHc-----------CCCeEEEEccC
Confidence            34567899998 99977666654           56666777764

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.54  E-value=0.92  Score=32.29  Aligned_cols=56  Identities=21%  Similarity=0.341  Sum_probs=40.2

Q ss_pred             CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC-----CCc---H---HHHHHHHHHhC
Q psy17592         84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE-----RDT---P---ELVGKYVKEFS  147 (183)
Q Consensus        84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~-----~d~---~---~~~~~~~~~~~  147 (183)
                      +.||=-|.+.||+. |+..-..|.+|.++       ++|-.+.+-+|..     +|+   +   +.-+.|.+..+
T Consensus         6 ~aVVElFTSqgCss-CPpAd~~L~~L~~~-------~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g   72 (225)
T d2axoa1           6 KGVVELFTSQGCAS-CPPADEALRKMIQK-------GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALG   72 (225)
T ss_dssp             CCEEEEEECTTCTT-CHHHHHHHHHHHHH-------TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTT
T ss_pred             CcEEEEeeCCCCCC-CHHHHHHHHHhhCC-------CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcC
Confidence            34555599999998 99999999999763       3788888888632     232   2   33356888876

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=82.84  E-value=0.76  Score=28.94  Aligned_cols=54  Identities=7%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592         88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL  153 (183)
Q Consensus        88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l  153 (183)
                      ..|+.+.|.. |+..+..|.+-           ++.+-.+.+-.+.-+.+.+.++++..+.++..+
T Consensus         3 ~ly~~~~C~~-~rka~~~L~~~-----------~i~~~~~d~~~~p~s~~eL~~ll~~~~~~~~~l   56 (114)
T d1z3ea1           3 TLYTSPSCTS-CRKARAWLEEH-----------EIPFVERNIFSEPLSIDEIKQILRMTEDGTDEI   56 (114)
T ss_dssp             EEEECTTCHH-HHHHHHHHHHT-----------TCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGT
T ss_pred             EEEcCCCCHH-HHHHHHHHHHC-----------CCCeEEEeeeccCCCHHHHHHHHHHhccCHHHH
Confidence            3567899997 99988777653           566666665433358899999999877555433

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.84  E-value=0.86  Score=28.49  Aligned_cols=37  Identities=8%  Similarity=0.083  Sum_probs=23.5

Q ss_pred             CCCEEEEEEE----cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592         82 LGKWALIYFG----FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD  130 (183)
Q Consensus        82 ~gk~vll~f~----~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d  130 (183)
                      ...+|+|+-=    .+.||. |......|.++           ++.+..+.+|
T Consensus        13 ~~~~VvvF~Kgt~~~p~Cp~-c~~ak~lL~~~-----------~i~~~~~~v~   53 (109)
T d1wika_          13 NKASVMLFMKGNKQEAKCGF-SKQILEILNST-----------GVEYETFDIL   53 (109)
T ss_dssp             TTSSEEEEESSTTTCCCSST-HHHHHHHHHHT-----------CSCEEEEESS
T ss_pred             hcCCEEEEeCCCCCCCCChH-HHHHHHHHHhc-----------CCCceEEEec
Confidence            3455666432    266998 99976666543           5667777777