Psyllid ID: psy17596

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MASRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEccEcccc
Coil and Loop (DISEMBL)
masrlgqmmmrkfstspamksaagnpdAVKLWRNLtyfgalpccaLVGVYVYLEhqaeeehhvrpefvkrEYLYIRnrrfpwgdgnhslfhnkhvnalpegyeed
Flexible Loop (DISEMBL)
MASRLGQMMMRKFstspamksaaGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQaeeehhvrpefvkrEYLYIRNRRFPWGDGNHSLFHNKhvnalpegyeed
Low Complexity Region (SEG)
MASRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED
Disordered region (IsUnstruct)
***************************AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHV**********
Disordered Region (DISOPRED)
********************************RNLTYFGALPCCALVGVYVYLEHQ********PEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNA********
Disordered Region (DISEMBL)
********MMRKFS**********NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED
Disordered Region (DISPRO)
**************************DAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9TTT7	109	Cytochrome c oxidase subu	yes	N/A	0.952	0.917	0.471	1e-19
P10818	111	Cytochrome c oxidase subu	yes	N/A	0.971	0.918	0.443	4e-19
P12074	109	Cytochrome c oxidase subu	yes	N/A	0.828	0.798	0.483	1e-18
P43024	111	Cytochrome c oxidase subu	yes	N/A	0.971	0.918	0.443	1e-18
P13182	109	Cytochrome c oxidase subu	yes	N/A	0.933	0.899	0.466	1e-18
O13085	102	Cytochrome c oxidase subu	N/A	N/A	0.704	0.725	0.486	7e-15
P10817	94	Cytochrome c oxidase subu	no	N/A	0.819	0.914	0.461	1e-14
P43023	97	Cytochrome c oxidase subu	no	N/A	0.819	0.886	0.461	3e-14
O13082	102	Cytochrome c oxidase subu	N/A	N/A	0.8	0.823	0.441	3e-14
Q02221	97	Cytochrome c oxidase subu	no	N/A	0.676	0.731	0.506	4e-14

>sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 3   SRLGQMMMR-KFSTSPAMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEE 60
           SR+ Q++ R +      M S A G   + ++W+ LTYF ALP   +  + VYL+   EE 
Sbjct: 7   SRVSQLLGRSRLQVGRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEE- 65

Query: 61  HHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
            H RPEF+   +L IR++ FPWGDGNH+LFHN HVN LP GYE+
Sbjct: 66  -HERPEFIAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYED 108

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Oryctolagus cuniculus (taxid: 9986)

>sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 2   ASRLGQMMMRKFS--TSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
           ASR+  ++ R       P    A G   + ++W+ LTYF ALP   +  + V+L+ + EE
Sbjct: 8   ASRVSGLLGRALPRVGRPMSSGAHGEEGSARIWKALTYFVALPGVGVSMLNVFLKSRHEE 67

Query: 60  EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             H RPEFV   +L IR + FPWGDGNH+LFHN H+N LP GYE++
Sbjct: 68  --HERPEFVAYPHLRIRTKPFPWGDGNHTLFHNPHMNPLPTGYEDE 111

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens GN=COX6A1 PE=1 SV=4

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 17  PAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIR 76
           P    A G   + ++W+ LT+F ALP  A+  + VYL+    E  H RPEF+   +L IR
Sbjct: 23  PMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGE--HERPEFIAYPHLRIR 80

Query: 77  NRRFPWGDGNHSLFHNKHVNALPEGYEED 105
            + FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 81  TKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Homo sapiens (taxid: 9606)

>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus GN=Cox6a1 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 64/106 (60%), Gaps = 4/106 (3%)

Query: 2   ASRLGQMMMRKFST--SPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
           ASR+ + + R       P    A G   + ++W+ LTYF ALP   +  + V+L+ + EE
Sbjct: 8   ASRVSRPLGRALPGLRRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSRHEE 67

Query: 60  EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             H RP FV   +L IR + FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 68  --HERPPFVAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 111

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Mus musculus (taxid: 10090)

>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus GN=COX6A1 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 5/103 (4%)

Query: 5   LGQMMMRKFSTSPAMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHH 62
            G +   +   S  M S A G   + ++W+ LTYF ALP   +  + V+L+ H  EEE  
Sbjct: 10  FGLLGRSRLQLSRCMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEEE-- 67

Query: 63  VRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
            RPEFV   +L IR++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 68  -RPEFVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Bos taurus (taxid: 9913)

>sp|O13085|COX6A_ONCMY Cytochrome c oxidase subunit 6A, mitochondrial OS=Oncorhynchus mykiss PE=3 SV=1

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 28  AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNH 87
           + + W+ L++  ALP  A+     Y++ Q  +  H  PEFV   +L IR +++PWGDGNH
Sbjct: 25  SARTWKILSFVLALPGVAVCIANAYMKMQ--QHSHEPPEFVAYSHLRIRTKKWPWGDGNH 82

Query: 88  SLFHNKHVNALPEGYE 103
           SLFHN H NALPEGYE
Sbjct: 83  SLFHNPHENALPEGYE 98

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Oncorhynchus mykiss (taxid: 8022)

>sp|P10817|CX6A2_RAT Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment) OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 14  STSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYL 73
           S + A K   G   A   WR LT+  ALP  AL  +  ++       HH RPEF+   +L
Sbjct: 8   SMASASKGDHGGAGA-NTWRLLTFVLALPSVALCSLNCWMH----AGHHERPEFIPYHHL 62

Query: 74  YIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
            IR + F WGDGNH+LFHN HVN LP GYE+
Sbjct: 63  RIRTKPFSWGDGNHTLFHNPHVNPLPTGYEQ 93

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

>sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus GN=Cox6a2 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 14  STSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYL 73
           S + A K   G   A   WR LT+  ALP  AL  +  ++       HH RPEF+   +L
Sbjct: 11  SMASAAKGDHGGAGA-NTWRLLTFVLALPGVALCSLNCWMH----AGHHERPEFIPYHHL 65

Query: 74  YIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
            IR + F WGDGNH+LFHN HVN LP GYE 
Sbjct: 66  RIRTKPFAWGDGNHTLFHNPHVNPLPTGYEH 96

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Mus musculus (taxid: 10090)

>sp|O13082|COX6A_CYPCA Cytochrome c oxidase subunit 6A, mitochondrial OS=Cyprinus carpio PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 18  AMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
           A  S   +    + W+ L++  ALP   +     Y++ QA    H  PEFV   +L IR 
Sbjct: 15  AAASQGSHEGGARTWKILSFVLALPGVGVCMANAYMKMQAHS--HDPPEFVPYPHLRIRT 72

Query: 78  RRFPWGDGNHSLFHNKHVNALPEGYE 103
           + +PWGDGNHSLFHN H NALP GYE
Sbjct: 73  KPWPWGDGNHSLFHNAHTNALPTGYE 98

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Cyprinus carpio (taxid: 7962)

>sp|Q02221|CX6A2_HUMAN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Homo sapiens GN=COX6A2 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 30  KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSL 89
           + WR LT+  ALP  AL     YL       H  RPEF   ++L IR + +PWGDGNH+L
Sbjct: 26  RTWRLLTFVLALPSVALCTFNSYLH----SGHRPRPEFRPYQHLRIRTKPYPWGDGNHTL 81

Query: 90  FHNKHVNALPEGYEE 104
           FHN HVN LP GYE 
Sbjct: 82  FHNSHVNPLPTGYEH 96

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
110671416	105	putative mitochondrial cytochrome oxidas	1.0	1.0	1.0	8e-57
442753217	111	Putative cytochrome c oxidase subunit vi	1.0	0.945	0.527	2e-22
242002136	111	cytochrome C oxidase, subunit VIa/COX13,	1.0	0.945	0.5	7e-22
91088963	112	PREDICTED: similar to CG17280 CG17280-PA	0.980	0.919	0.495	1e-21
158296406	110	AGAP000851-PA [Anopheles gambiae str. PE	0.952	0.909	0.486	1e-20
321471482	111	hypothetical protein DAPPUDRAFT_302522 [	0.971	0.918	0.490	3e-19
195121986	109	GI20495 [Drosophila mojavensis] gi|19391	0.923	0.889	0.5	5e-19
146746652	108	mitochondrial cytochrome c oxidase subun	0.695	0.675	0.6	6e-19
298160948	109	cytochrome c oxidase subunit VIa polypep	0.904	0.871	0.485	7e-19
307207908	104	Cytochrome c oxidase polypeptide 6A1, mi	0.952	0.961	0.460	1e-18

>gi|110671416|gb|ABG81959.1| putative mitochondrial cytochrome oxidase subunit VIa [Diaphorina citri]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MASRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEE 60
           MASRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEE
Sbjct: 1   MASRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEE 60

Query: 61  HHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
           HHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED
Sbjct: 61  HHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442753217|gb|JAA68768.1| Putative cytochrome c oxidase subunit via/cox13 [Ixodes ricinus]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 68/110 (61%), Gaps = 5/110 (4%)

Query: 1   MASRLGQMMMRKFSTSP---AMKSAAGNPD--AVKLWRNLTYFGALPCCALVGVYVYLEH 55
           MAS      +R FS+S    A    AGN    A K+WRNLT+F A P   L  +  YL  
Sbjct: 1   MASMNFAQFLRYFSSSAIRYAKPGEAGNAHLAAQKMWRNLTFFVAFPAIGLCALNAYLAE 60

Query: 56  QAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
           Q   +H  RPEF K EYLYIR ++FPWGDGNH LFHN  VNALPEGYE++
Sbjct: 61  QEHHKHFHRPEFKKYEYLYIRTKKFPWGDGNHGLFHNPKVNALPEGYEDE 110

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242002136|ref|XP_002435711.1| cytochrome C oxidase, subunit VIa/COX13, putative [Ixodes scapularis] gi|215499047|gb|EEC08541.1| cytochrome C oxidase, subunit VIa/COX13, putative [Ixodes scapularis]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 66/110 (60%), Gaps = 5/110 (4%)

Query: 1   MASRLGQMMMRKFSTSPAMKSAAGNPD-----AVKLWRNLTYFGALPCCALVGVYVYLEH 55
           MAS      +R FS+S    +  G        A K+WRNLT+F A P   L  +  YL  
Sbjct: 1   MASMNFAQFLRYFSSSAIRYAKPGEAGSAHLAAQKMWRNLTFFVAFPAIGLCALNAYLAE 60

Query: 56  QAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
           +   +H  RPEF K EYLYIR +RFPWGDGNH LFHN  VNALPEGYE++
Sbjct: 61  KEHHKHFHRPEFKKYEYLYIRTKRFPWGDGNHGLFHNPKVNALPEGYEDE 110

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088963|ref|XP_974027.1| PREDICTED: similar to CG17280 CG17280-PA [Tribolium castaneum] gi|270012806|gb|EFA09254.1| hypothetical protein TcasGA2_TC006519 [Tribolium castaneum]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 67/113 (59%), Gaps = 10/113 (8%)

Query: 1   MASRLGQMMMRKFSTSPAMKSAAGNPDAV--------KLWRNLTYFGALPCCALVGVYVY 52
           MA+ +   + R   TS         P AV        K+WRN+T+F A P  AL  V  Y
Sbjct: 1   MAALINHSVRRFLQTSARRAVQVQGPSAVSGGHEGGYKVWRNMTFFVAFPAIALCAVNCY 60

Query: 53  LEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
           L H +   HH RP FVK EYL IR +RFPWGDGNHSLFHN H NALP+GYE++
Sbjct: 61  LAHYSG--HHERPPFVKYEYLRIRTKRFPWGDGNHSLFHNPHTNALPDGYEDE 111

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296406|ref|XP_316821.4| AGAP000851-PA [Anopheles gambiae str. PEST] gi|157015281|gb|EAA12143.4| AGAP000851-PA [Anopheles gambiae str. PEST]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 68/109 (62%), Gaps = 9/109 (8%)

Query: 3   SRLGQMMMRKFSTSPAMKSAAGNPDAV--------KLWRNLTYFGALPCCALVGVYVYLE 54
           S +  ++ R  S S    +  G P AV        K+W+ L++F A+P   L  +  YL+
Sbjct: 2   SLVSHILRRSISQSIVRNAEVGGPSAVAGHEAGGYKVWKKLSFFVAVPAVGLCMLNAYLK 61

Query: 55  HQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE 103
           HQ EE  H RPEFVK E+L IRN+RFPWG+GN SLFHN H NALP+GYE
Sbjct: 62  HQ-EEHGHPRPEFVKYEHLRIRNKRFPWGEGNKSLFHNPHTNALPDGYE 109

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471482|gb|EFX82455.1| hypothetical protein DAPPUDRAFT_302522 [Daphnia pulex]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 1   MASRLGQMMMRKFSTS---PAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQA 57
           MA+ LG+++ R  +T+       + +G+ D  K+WRNLT+  ALP  AL  + VYL    
Sbjct: 1   MATVLGKVISRGIATTRVANGQAAVSGHHDGWKIWRNLTFLVALPGVALCMLNVYLGLD- 59

Query: 58  EEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE 103
           + E H  P FV  EY+ IRN+RFPWG+G  SLFHN HVNALP GYE
Sbjct: 60  DVEAHSAPPFVPYEYMRIRNKRFPWGEGQKSLFHNPHVNALPGGYE 105

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121986|ref|XP_002005493.1| GI20495 [Drosophila mojavensis] gi|193910561|gb|EDW09428.1| GI20495 [Drosophila mojavensis]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 3/100 (3%)

Query: 4   RLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHV 63
           ++G +  R  S + A+  A  +    K+W+ L++F A+P   L  +  YL+HQ EE  H 
Sbjct: 12  QIGVIAARNMSGTAAV--AGEHSGGYKVWKRLSFFVAMPAVGLCMLNAYLKHQ-EEHDHP 68

Query: 64  RPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE 103
           RPEFVK EYL  R +RFPWG+GN SLFHN HVNALP+GYE
Sbjct: 69  RPEFVKYEYLRRREKRFPWGEGNKSLFHNPHVNALPDGYE 108

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|146746652|gb|ABQ43785.1| mitochondrial cytochrome c oxidase subunit VIa [Bombyx mori]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 31  LWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLF 90
           LW+ +++F A P  AL  +  YL HQ  EEHH RP FV  EY+ IR +RFPWGDG  SLF
Sbjct: 35  LWKRMSFFVAFPAIALGMLNAYLAHQ--EEHHERPPFVPYEYMRIRTKRFPWGDGQKSLF 92

Query: 91  HNKHVNALPEGYEED 105
           HN HVNALP GYE+D
Sbjct: 93  HNPHVNALPSGYEDD 107

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298160948|ref|NP_001177150.1| cytochrome c oxidase subunit VIa polypeptide 1 [Sus scrofa]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 8/103 (7%)

Query: 4   RLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHH 62
           R  Q+ +R+    P   SA G   + ++W+ LTYF ALP   +  + V+L+ H AEEE  
Sbjct: 14  RRSQLQLRR----PMSSSAHGEEGSARMWKTLTYFVALPGVGVSMLNVFLKSHHAEEE-- 67

Query: 63  VRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
            RPEFV   +L IR++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 68  -RPEFVPYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307207908|gb|EFN85469.1| Cytochrome c oxidase polypeptide 6A1, mitochondrial [Harpegnathos saltator]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 3   SRLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHH 62
           +R+ +   RK+S S + + +  + +A  LW+ L++F A P   L  +  YL HQA   H 
Sbjct: 5   TRVVRTFTRKYS-SASTEGSTHSKNAEILWKRLSFFVAFPAIGLAMLNSYLNHQAHH-HD 62

Query: 63  VRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
            RPEF+  ++L IRN+ FPWGDGNHSLFHN+  N LP+GYEE
Sbjct: 63  ERPEFIPYDHLRIRNKSFPWGDGNHSLFHNRKTNPLPDGYEE 104

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|F1RJI7	109	COX6A1 "Cytochrome c oxidase s	0.904	0.871	0.485	8e-21
ZFIN|ZDB-GENE-030131-7715	108	cox6a1 "cytochrome c oxidase s	0.923	0.898	0.470	9.2e-20
UNIPROTKB|P13182	109	COX6A1 "Cytochrome c oxidase s	0.952	0.917	0.471	1.5e-19
RGD|2384	111	Cox6a1 "cytochrome c oxidase,	0.971	0.918	0.443	1.9e-19
UNIPROTKB|P12074	109	COX6A1 "Cytochrome c oxidase s	0.819	0.788	0.488	2.5e-19
UNIPROTKB|Q5T8I0	109	COX6A1P2 "Protein COX6A1P2" [H	0.819	0.788	0.488	2.5e-19
UNIPROTKB|F1MBC7	109	F1MBC7 "Cytochrome c oxidase s	0.952	0.917	0.462	3.1e-19
FB|FBgn0034877	109	levy "levy" [Drosophila melano	0.971	0.935	0.449	4e-19
MGI|MGI:103099	111	Cox6a1 "cytochrome c oxidase s	0.971	0.918	0.443	5.1e-19
UNIPROTKB|J9P8X9	233	LOC477508 "Cytochrome c oxidas	0.809	0.364	0.488	1.1e-18

UNIPROTKB|F1RJI7 COX6A1 "Cytochrome c oxidase subunit 6A, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 50/103 (48%), Positives = 67/103 (65%)

Query:     4 RLGQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHH 62
             R  Q+ +R+    P   SA G   + ++W+ LTYF ALP   +  + V+L+ H AEEE  
Sbjct:    14 RRSQLQLRR----PMSSSAHGEEGSARMWKTLTYFVALPGVGVSMLNVFLKSHHAEEE-- 67

Query:    63 VRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
              RPEFV   +L IR++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct:    68 -RPEFVPYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-7715 cox6a1 "cytochrome c oxidase subunit VIa polypeptide 1" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 48/102 (47%), Positives = 65/102 (63%)

Query:     4 RLGQMMMRK--FSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEH 61
             RL Q + +    + S  + +AA   +A K W+ LT+  ALP  A+  + +YL  Q    H
Sbjct:     6 RLSQKLFKSAALTQSRQLSAAAHGENAAKTWKILTFVVALPGVAVCMLNMYLRSQ---HH 62

Query:    62 HVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE 103
             H +PEFV   +L IR++RFPWGDGN +LFHN HVNALP+GYE
Sbjct:    63 HEQPEFVPYSHLRIRSKRFPWGDGNKTLFHNPHVNALPDGYE 104

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P13182 COX6A1 "Cytochrome c oxidase subunit 6A1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 50/106 (47%), Positives = 68/106 (64%)

Query:     3 SRLGQMMMR-KFSTSPAMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEE 59
             SR+  ++ R +   S  M S A G   + ++W+ LTYF ALP   +  + V+L+ H  EE
Sbjct:     7 SRVFGLLGRSRLQLSRCMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEE 66

Query:    60 EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             E   RPEFV   +L IR++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct:    67 E---RPEFVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

RGD|2384 Cox6a1 "cytochrome c oxidase, subunit VIa, polypeptide 1" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 47/106 (44%), Positives = 65/106 (61%)

Query:     2 ASRLGQMMMRKFST--SPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
             ASR+  ++ R       P    A G   + ++W+ LTYF ALP   +  + V+L+ + EE
Sbjct:     8 ASRVSGLLGRALPRVGRPMSSGAHGEEGSARIWKALTYFVALPGVGVSMLNVFLKSRHEE 67

Query:    60 EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
               H RPEFV   +L IR + FPWGDGNH+LFHN H+N LP GYE++
Sbjct:    68 --HERPEFVAYPHLRIRTKPFPWGDGNHTLFHNPHMNPLPTGYEDE 111

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

UNIPROTKB|P12074 COX6A1 "Cytochrome c oxidase subunit 6A1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/90 (48%), Positives = 58/90 (64%)

Query:    17 PAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHHVRPEFVKREYLYI 75
             P    A G   + ++W+ LT+F ALP  A+  + VYL+ H  E   H RPEF+   +L I
Sbjct:    23 PMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGE---HERPEFIAYPHLRI 79

Query:    76 RNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             R + FPWGDGNH+LFHN HVN LP GYE++
Sbjct:    80 RTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5T8I0 COX6A1P2 "Protein COX6A1P2" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/90 (48%), Positives = 58/90 (64%)

Query:    17 PAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHHVRPEFVKREYLYI 75
             P    A G   + ++W+ LT+F ALP  A+  + VYL+ H  E   H RPEF+   +L I
Sbjct:    23 PMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGE---HERPEFIAYPHLRI 79

Query:    76 RNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             R + FPWGDGNH+LFHN HVN LP GYE++
Sbjct:    80 RTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

UNIPROTKB|F1MBC7 F1MBC7 "Cytochrome c oxidase subunit 6A, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 49/106 (46%), Positives = 66/106 (62%)

Query:     3 SRLGQMMMRK-FSTSPAMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEE 59
             SR+  ++ R     S  M S   G   + ++W+ LTYF ALP   +  + V+L+ H  EE
Sbjct:     7 SRVSGLLGRSGLQLSRCMSSGTHGEEGSARIWKALTYFVALPGVGVSMLNVFLKSHHGEE 66

Query:    60 EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             E   RPEFV   +L IR++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct:    67 E---RPEFVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

FB|FBgn0034877 levy "levy" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 49/109 (44%), Positives = 66/109 (60%)

Query:     1 MASRLGQMMMRKFSTSPAMK-----SAAG-NPDAVKLWRNLTYFGALPCCALVGVYVYLE 54
             M++ L   + R+F  S A       + AG +    K+W+ L++F A+P   L  +  YL+
Sbjct:     1 MSAILNHAIRRQFGASAARNMSGTAAVAGEHSGGYKVWKRLSFFVAVPAVGLCMLNAYLK 60

Query:    55 HQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE 103
             HQ EE    R EFVK +YL  R +RFPWG+G  SLFHN HVNALP+GYE
Sbjct:    61 HQ-EEHDKPRQEFVKYDYLRRREKRFPWGEGQKSLFHNPHVNALPDGYE 108

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS;IMP

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IC;ISS

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS;IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0030234 "enzyme regulator activity" evidence=IMP

MGI|MGI:103099 Cox6a1 "cytochrome c oxidase subunit VIa polypeptide 1" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 47/106 (44%), Positives = 64/106 (60%)

Query:     2 ASRLGQMMMRKFS--TSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
             ASR+ + + R       P    A G   + ++W+ LTYF ALP   +  + V+L+ + EE
Sbjct:     8 ASRVSRPLGRALPGLRRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSRHEE 67

Query:    60 EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
               H RP FV   +L IR + FPWGDGNH+LFHN HVN LP GYE++
Sbjct:    68 --HERPPFVAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 111

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|J9P8X9 LOC477508 "Cytochrome c oxidase subunit 6A, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 44/90 (48%), Positives = 60/90 (66%)

Query:    18 AMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHHVRPEFVKREYLYI 75
             +M S A G   + ++W+ LTYF ALP   +  + V+L+ H  E   H RPEF+   +L I
Sbjct:   147 SMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGE---HERPEFIAYPHLRI 203

Query:    76 RNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
             R++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct:   204 RSKPFPWGDGNHTLFHNSHVNPLPTGYEDE 233

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T070	COX6A_ARATH	No assigned EC number	0.3541	0.8095	0.8333	yes	N/A
P13182	CX6A1_BOVIN	No assigned EC number	0.4660	0.9333	0.8990	yes	N/A
P10818	CX6A1_RAT	No assigned EC number	0.4433	0.9714	0.9189	yes	N/A
P43024	CX6A1_MOUSE	No assigned EC number	0.4433	0.9714	0.9189	yes	N/A
Q9TTT7	CX6A1_RABIT	No assigned EC number	0.4711	0.9523	0.9174	yes	N/A
Q5RC38	CX6A2_PONAB	No assigned EC number	0.5066	0.6761	0.7319	yes	N/A
P12074	CX6A1_HUMAN	No assigned EC number	0.4831	0.8285	0.7981	yes	N/A
Q20779	COX6A_CAEEL	No assigned EC number	0.4	0.7428	0.6093	yes	N/A
P32799	COX13_YEAST	No assigned EC number	0.3367	0.8571	0.6976	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
cd00925	86	cd00925, Cyt_c_Oxidase_VIa, Cytochrome c oxidase s	8e-34
pfam02046	116	pfam02046, COX6A, Cytochrome c oxidase subunit VIa	5e-32
PLN02595	102	PLN02595, PLN02595, cytochrome c oxidase subunit V	8e-06

>gnl|CDD|238465 cd00925, Cyt_c_Oxidase_VIa, Cytochrome c oxidase subunit VIa

 Score =  111 bits (280), Expect = 8e-34
 Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 18  AMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
                       +LW+ ++++ ALP  AL  +  YL+H+ E E H RPEFV+ E+L IR 
Sbjct: 2   TAAKGEHAAGTSELWKKISFYVALPAVALCMLNAYLKHK-EHEEHERPEFVEYEHLNIRT 60

Query: 78  RRFPWGDGNHSLFHNKHVNALPEGYE 103
           + FPWGDGN +LFHN HVNALP GYE
Sbjct: 61  KPFPWGDGNKTLFHNPHVNALPTGYE 86

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip in CcO, depending on the presence of cardiolipin and palmitate. Length = 86

>gnl|CDD|145298 pfam02046, COX6A, Cytochrome c oxidase subunit VIa

 Score =  107 bits (270), Expect = 5e-32
 Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 19/114 (16%)

Query: 2   ASRLGQMMMRKFSTSPAMK------------SAAGNPDAVKLWRNLTYFGALPCCALVGV 49
                Q   R  S++ A               A G     KLW+ L+Y+ A+P  AL  +
Sbjct: 6   LRAPAQTQRRFASSAAAGGNAFVREREAVKEHAEG---TTKLWKKLSYYVAIPAIALCAI 62

Query: 50  YVYLEHQAEEEH--HV--RPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALP 99
             Y       EH  H+  R EFV+ EY  IR + FPWGDG+ +LF N HVNA P
Sbjct: 63  NAYFLEAEHAEHREHLPDREEFVEYEYQNIRTKPFPWGDGDKTLFWNPHVNAHP 116

Length = 116

>gnl|CDD|178205 PLN02595, PLN02595, cytochrome c oxidase subunit VI protein

 Score = 41.0 bits (95), Expect = 8e-06
 Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 3   SRLGQMMMRKFSTSPA--MKSAAGNPDAVKL--WRNLTYFGALPCCALVGVYVYLEHQAE 58
           SR       K S +P     S+AG+ DA +   W  +TY G   C AL  VYV       
Sbjct: 11  SRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTAL-AVYVL-----S 64

Query: 59  EEHHVRPEFVKREYLYIRNRRFPWG-DGNHSLFHNK 93
           + HH   +     Y++IRN+ FPWG DG   + HNK
Sbjct: 65  KGHHHGEDPPAYPYMHIRNKEFPWGPDGLFEVKHNK 100

Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
cd00925	86	Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa	100.0
PF02046	116	COX6A: Cytochrome c oxidase subunit VIa; InterPro:	100.0
KOG3469|consensus	112		100.0
PLN02595	102	cytochrome c oxidase subunit VI protein	99.95

>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa

Probab=100.00  E-value=1.9e-46  Score=255.54  Aligned_cols=78  Identities=54%  Similarity=1.035  Sum_probs=74.0

Q ss_pred             CchhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCc
Q psy17596         25 NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE  103 (105)
Q Consensus        25 ~~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE  103 (105)
                      +++++++||+||++||+|||+||++|+|+++++|++ +++|||++|+|||||+|+||||||||||||||+||+||+|||
T Consensus         9 ~~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~-~~~pe~~~Y~yl~IR~K~FpWGDG~~tlFhN~~vN~lp~gye   86 (86)
T cd00925           9 AAGTSELWKKISFYVALPAVALCMLNAYLKHKEHEE-HERPEFVEYEHLNIRTKPFPWGDGNKTLFHNPHVNALPTGYE   86 (86)
T ss_pred             ccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCccceeecCCCCCCCCCcccccCCCcCCCCCCCC
Confidence            347799999999999999999999999999998765 679999999999999999999999999999999999999998

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i

>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1

Probab=100.00  E-value=1.6e-42  Score=246.59  Aligned_cols=93  Identities=49%  Similarity=0.853  Sum_probs=50.1

Q ss_pred             HHHHHHhhccccchhc-------cc-C-CchhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhc--c--CCCCCCCCcc
Q psy17596          6 GQMMMRKFSTSPAMKS-------AA-G-NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEH--H--VRPEFVKREY   72 (105)
Q Consensus         6 ~~~~~~~~~~~~~r~~-------~~-~-~~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~H--h--~~PE~~~Y~y   72 (105)
                      ++..+|++++++++..       ++ + +++++++||+||++||||+|+|+++|+|.++.+|++|  |  ++|||++|||
T Consensus        10 ~~~~~R~~s~~~~~~~~f~~~~~a~~~ha~~~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~y   89 (116)
T PF02046_consen   10 RRAARRFFSTSAARASAFLAERSASEEHAEETAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPY   89 (116)
T ss_dssp             ----------------------TSSSSTSSSSHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------TT
T ss_pred             cccccccccccccccccccchhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCcc
Confidence            4455666666544321       11 2 4588999999999999999999999999888887764  2  6899999999


Q ss_pred             cccccCCCCCCCCCCCCccCCCcCCC
Q psy17596         73 LYIRNRRFPWGDGNHSLFHNKHVNAL   98 (105)
Q Consensus        73 l~iR~K~FPWGDG~~tLFhNp~~N~l   98 (105)
                      ||||+|+||||||||||||||+||+|
T Consensus        90 l~iR~K~FPWGDG~~tLFhNp~~N~l  115 (116)
T PF02046_consen   90 LRIRTKPFPWGDGNHTLFHNPHVNAL  115 (116)
T ss_dssp             SS--SS--SSTTSSS-TT--TTT-EB
T ss_pred             ceecCCCCCCCCCCcCCccCCCcCCC
Confidence            99999999999999999999999987

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....

>KOG3469|consensus

Probab=100.00  E-value=8.2e-42  Score=242.14  Aligned_cols=104  Identities=45%  Similarity=0.818  Sum_probs=92.6

Q ss_pred             ChhhHHHHHHHhhccccchhc----ccC--CchhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccc
Q psy17596          1 MASRLGQMMMRKFSTSPAMKS----AAG--NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLY   74 (105)
Q Consensus         1 m~~~~~~~~~~~~~~~~~r~~----~~~--~~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~   74 (105)
                      |++.+.++..++++.++.|.+    ++.  .++.+++|++||+|+++||++||++|+|+.+++|.+ |++||++.|+|||
T Consensus         3 l~~~~~rSv~r~~~~ks~~~~~~~~~~~~~~e~~s~~Wkkit~~~alP~~al~~~n~y~~~~~~~e-~~~~e~~~Y~fl~   81 (112)
T KOG3469|consen    3 LAVPLTRSVTRRLGLKSARHMYRRAAVAGFKEGGSRTWKKITFFVALPAVALAMYNAYLGHGHHPE-HERPEFRAYEFLN   81 (112)
T ss_pred             cchhhcccccccccccccccccchhhhhhhcchhhhhhhheeeeeeccHHHHHHHHHHHhhccCcc-cCCccccccchhh
Confidence            455667889999988777765    222  345579999999999999999999999999999877 8899999999999


Q ss_pred             cccCCCCCCCCCCCCccCCCcCCCCCCCcCC
Q psy17596         75 IRNRRFPWGDGNHSLFHNKHVNALPEGYEED  105 (105)
Q Consensus        75 iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~e  105 (105)
                      ||+|+|||||||+||||||+||+||+|||+|
T Consensus        82 iR~K~fpWgdG~~tLfhN~~vn~l~~~~E~d  112 (112)
T KOG3469|consen   82 IRNKPFPWGDGNKTLFHNPHVNPLPTGYEHD  112 (112)
T ss_pred             hhcCCCCCCCCcchhccCcccccCcccccCC
Confidence            9999999999999999999999999999986

>PLN02595 cytochrome c oxidase subunit VI protein

Probab=99.95  E-value=6e-29  Score=174.00  Aligned_cols=88  Identities=31%  Similarity=0.609  Sum_probs=61.6

Q ss_pred             ChhhHHHHHHHhhcc--------ccchhccc--CCc--hhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCC
Q psy17596          1 MASRLGQMMMRKFST--------SPAMKSAA--GNP--DAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFV   68 (105)
Q Consensus         1 m~~~~~~~~~~~~~~--------~~~r~~~~--~~~--~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~   68 (105)
                      ||..+.|+.++++..        ...|+.++  +|+  +++++||+|||++++||++   +|+|+++++|++ +++|  +
T Consensus         1 ma~~~~~~~l~~~~~~~~~~~~~~~~r~~~a~~~h~~a~~a~~WkklS~~~v~~c~~---lnaY~l~~eH~~-~e~p--~   74 (102)
T PLN02595          1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTA---LAVYVLSKGHHH-GEDP--P   74 (102)
T ss_pred             ChHHHHHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhHHHhHHHHH---HHHHHhhhcccc-CCCC--C
Confidence            666666665555431        12233322  233  5899999999997554432   378888877644 3444  5


Q ss_pred             CCcccccccCCCCCC-CCCCCCccCCC
Q psy17596         69 KREYLYIRNRRFPWG-DGNHSLFHNKH   94 (105)
Q Consensus        69 ~Y~yl~iR~K~FPWG-DG~~tLFhNp~   94 (105)
                      +|+|||||+|+|||| ||++++|||.+
T Consensus        75 ~Y~yLrIRtK~FPWG~DG~~e~~hn~~  101 (102)
T PLN02595         75 AYPYMHIRNKEFPWGPDGLFEVKHNKE  101 (102)
T ss_pred             CCCcceeecCCCCCCCCcccccccccC
Confidence            999999999999999 99999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
2y69_G	97	Bovine Heart Cytochrome C Oxidase Re-Refined With M		6e-13
1occ_G	84	Structure Of Bovine Heart Cytochrome C Oxidase At T		9e-13
1v54_G	85	Bovine Heart Cytochrome C Oxidase At The Fully Oxid		9e-13

>pdb|2Y69|G Chain G, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 97

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 28  AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNH 87
             + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNH
Sbjct: 24  GARTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNH 79
Query: 88  SLFHNKHVNALPEGYEE 104
           + FHN  VN LP GYE+
Sbjct: 80  TFFHNPRVNPLPTGYEK 96

>pdb|1OCC|G Chain G, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 84

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 28  AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNH 87
             + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNH
Sbjct: 12  GARTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNH 67
Query: 88  SLFHNKHVNALPEGYEE 104
           + FHN  VN LP GYE+
Sbjct: 68  TFFHNPRVNPLPTGYEK 84

>pdb|1V54|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 85

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 28  AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNH 87
             + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNH
Sbjct: 12  GARTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNH 67
Query: 88  SLFHNKHVNALPEGYEE 104
           + FHN  VN LP GYE+
Sbjct: 68  TFFHNPRVNPLPTGYEK 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2y69_G	97	Cytochrome C oxidase polypeptide 6A2; electron tra	1e-35
1v54_G	85	Cytochrome C oxidase polypeptide VIA-heart; oxidor	1e-35

>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 97

 Score =  116 bits (291), Expect = 1e-35
 Identities = 39/94 (41%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 14  STSPAMKSAAGN---PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKR 70
           S S  + SAA         + WR LT+  ALP  AL  +  +L       H  RP F+  
Sbjct: 7   SLSRGLASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPY 62

Query: 71  EYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
            +L IR + F WGDGNH+ FHN  VN LP GYE+
Sbjct: 63  HHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK 96

>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ... Length = 85

 Score =  115 bits (290), Expect = 1e-35
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 18  AMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
           +           + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR 
Sbjct: 2   SAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRT 57

Query: 78  RRFPWGDGNHSLFHNKHVNALPEGYEE 104
           + F WGDGNH+ FHN  VN LP GYE+
Sbjct: 58  KPFSWGDGNHTFFHNPRVNPLPTGYEK 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2y69_G	97	Cytochrome C oxidase polypeptide 6A2; electron tra	100.0
1v54_G	85	Cytochrome C oxidase polypeptide VIA-heart; oxidor	100.0

>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=5.6e-48  Score=266.95  Aligned_cols=76  Identities=43%  Similarity=0.792  Sum_probs=71.6

Q ss_pred             chhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCcCC
Q psy17596         26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED  105 (105)
Q Consensus        26 ~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~e  105 (105)
                      ++++++||+||++||+|+|+||++|+|+.++|    |++|||++|+|||||+|+||||||||||||||++|+||+|||||
T Consensus        22 ~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~e----h~~~E~~~Y~yl~IR~K~FPWGDG~~tLFhNp~~N~lp~GyE~~   97 (97)
T 2y69_G           22 GTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP   97 (97)
T ss_dssp             SCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBSCC-
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCCCCCCchhhhccCCCCCCCCCcCcccCCCcCCCCCCCCCC
Confidence            46799999999999999999999999998876    46899999999999999999999999999999999999999997

>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...

Probab=100.00  E-value=4.9e-47  Score=256.94  Aligned_cols=76  Identities=43%  Similarity=0.792  Sum_probs=71.9

Q ss_pred             chhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCcCC
Q psy17596         26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED  105 (105)
Q Consensus        26 ~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~e  105 (105)
                      ++++++||+||++||||+|+||++|+|+.++|    |++|||++|+|||||+|+||||||||||||||++|+||+|||||
T Consensus        10 ~~~~~~Wkkis~~va~P~v~l~~~n~y~~~~e----~~~pE~~~Y~yl~IR~K~FPWGdGd~tLFhN~~~N~lp~gyE~~   85 (85)
T 1v54_G           10 GTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP   85 (85)
T ss_dssp             CCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBCCC-
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCCCCCchhheecCCCCCCCCCcCcccCCCcCCCCCCCCCC
Confidence            57899999999999999999999999998876    56899999999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1v54g_	84	f.23.2.1 (G:) Mitochondrial cytochrome c oxidase s	6e-36

>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]} Length = 84

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit VIa
family: Mitochondrial cytochrome c oxidase subunit VIa
domain: Mitochondrial cytochrome c oxidase subunit VIa
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  115 bits (289), Expect = 6e-36
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 21  SAAGNPDAV---KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
           SAA         + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR 
Sbjct: 2   SAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRT 57

Query: 78  RRFPWGDGNHSLFHNKHVNALPEGYEE 104
           + F WGDGNH+ FHN  VN LP GYE+
Sbjct: 58  KPFSWGDGNHTFFHNPRVNPLPTGYEK 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1v54g_	84	Mitochondrial cytochrome c oxidase subunit VIa {Co	100.0

>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit VIa
family: Mitochondrial cytochrome c oxidase subunit VIa
domain: Mitochondrial cytochrome c oxidase subunit VIa
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-47  Score=257.95  Aligned_cols=75  Identities=45%  Similarity=0.837  Sum_probs=69.8

Q ss_pred             chhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCcC
Q psy17596         26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEE  104 (105)
Q Consensus        26 ~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~  104 (105)
                      ++++++||||||+||+|+|+||++|+|+.+    +||++|||++|+|||||+|+||||||||||||||++|+||+||||
T Consensus        10 ~~~~~lWkkis~~va~P~i~l~~~n~~~~~----~h~e~pe~~~Y~yl~IR~K~FpWGDG~~tLFhN~~~N~lp~Gye~   84 (84)
T d1v54g_          10 GTGARTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK   84 (84)
T ss_dssp             CCCHHHHHHHHHHTHHHHHHHHHHHHTTSC----SCCCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccCCCCCCCchhhhhccccCCCCCCcccccCCccCCCCCCCCC
Confidence            468999999999999999999999999632    337799999999999999999999999999999999999999998