Psyllid ID: psy17645

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MSYILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITINSV
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccccEEEEEEEccccccEEEcEEccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccHHHHccccccccccccccccccccccEEEEEccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHccccHcccccEEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEcccHHHHEEEEEEcccHHHHcccEEEEEEEEcccccccEEEEEEEEEHHHccccccEEEEEEcEccccccHHHHHHccccccEEEEEEEEEcccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
msyilpyskksFYLLNLKVLLtdlpifkpeqtleydfnanslSVTViqaedlpaldmggtsdpyvkvyllpdkkkkfETKVHrktlnpvfNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFdfdrfskhdqiGEVKVALCQIDLAQTIEEWRELQSvegeggqvyyldgpkgnlatgkkalylpnvgvknkhntktitinsv
Flexible Loop (DISEMBL)
msyilpyskKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKkfetkvhrktlnpvfneTFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALylpnvgvknkhntktitinsv
Low Complexity Region (SEG)
MSYILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITINSV
Disordered region (IsUnstruct)
**YILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVK*************
Disordered Region (DISOPRED)
*******SKK**********LTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ*******************ATGKKALYLPNVGVK*K***********
Disordered Region (DISEMBL)
MSYILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITINSV
Disordered Region (DISPRO)
*SYILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITINSV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITINSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
P21521	474	Synaptotagmin 1 OS=Drosop	yes	N/A	0.599	0.261	0.830	1e-60
P46097	422	Synaptotagmin-2 OS=Mus mu	yes	N/A	0.584	0.286	0.664	4e-45
P29101	422	Synaptotagmin-2 OS=Rattus	yes	N/A	0.584	0.286	0.664	6e-45
Q8N9I0	419	Synaptotagmin-2 OS=Homo s	yes	N/A	0.584	0.288	0.664	6e-45
P41823	428	Synaptotagmin-1 OS=Aplysi	N/A	N/A	0.584	0.282	0.626	2e-43
P47191	424	Synaptotagmin-1 OS=Gallus	no	N/A	0.603	0.294	0.623	5e-43
P24506	439	Synaptotagmin-B OS=Diplob	N/A	N/A	0.584	0.275	0.611	1e-42
P21707	421	Synaptotagmin-1 OS=Rattus	no	N/A	0.603	0.296	0.623	1e-42
P46096	421	Synaptotagmin-1 OS=Mus mu	no	N/A	0.603	0.296	0.623	1e-42
Q5R4J5	419	Synaptotagmin-1 OS=Pongo	yes	N/A	0.603	0.298	0.623	1e-42

>sp|P21521|SY65_DROME Synaptotagmin 1 OS=Drosophila melanogaster GN=Syt1 PE=1 SV=2

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/136 (83%), Positives = 119/136 (87%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct: 200 LEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 259

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TF FK             +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LC IDLAQT
Sbjct: 260 TFTFK------------SLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQT 307

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWR+L SVEGEGGQ
Sbjct: 308 IEEWRDLVSVEGEGGQ 323

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.
Drosophila melanogaster (taxid: 7227)

>sp|P46097|SYT2_MOUSE Synaptotagmin-2 OS=Mus musculus GN=Syt2 PE=1 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 101/134 (75%), Gaps = 13/134 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FN
Sbjct: 149 SLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFN 208

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF FK             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q
Sbjct: 209 ETFTFK-------------VPYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQ 255

Query: 152 TIEEWRELQSVEGE 165
            IEEWR+LQ  E E
Sbjct: 256 PIEEWRDLQGGEKE 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Mus musculus (taxid: 10090)

>sp|P29101|SYT2_RAT Synaptotagmin-2 OS=Rattus norvegicus GN=Syt2 PE=1 SV=1

 Score =  180 bits (456), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 101/134 (75%), Gaps = 13/134 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FN
Sbjct: 149 SLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFN 208

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF FK             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q
Sbjct: 209 ETFTFK-------------VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQ 255

Query: 152 TIEEWRELQSVEGE 165
            IEEWR+LQ  E E
Sbjct: 256 PIEEWRDLQGGEKE 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Rattus norvegicus (taxid: 10116)

>sp|Q8N9I0|SYT2_HUMAN Synaptotagmin-2 OS=Homo sapiens GN=SYT2 PE=1 SV=2

 Score =  180 bits (456), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 101/134 (75%), Gaps = 13/134 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FN
Sbjct: 146 SLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFN 205

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF FK             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q
Sbjct: 206 ETFTFK-------------VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQ 252

Query: 152 TIEEWRELQSVEGE 165
            IEEWR+LQ  E E
Sbjct: 253 PIEEWRDLQGGEKE 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Homo sapiens (taxid: 9606)

>sp|P41823|SY65_APLCA Synaptotagmin-1 OS=Aplysia californica GN=SYT1 PE=1 SV=2

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 101/134 (75%), Gaps = 13/134 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF    LSV VIQA DLP +DM GTSDPYVKVYLLPDKKKK+ETKVHRKTLNPVFN
Sbjct: 160 SLDYDFQKGELSVNVIQAADLPGMDMSGTSDPYVKVYLLPDKKKKYETKVHRKTLNPVFN 219

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E+F FK             VPYA+  +K L FA++DFDRFSKHDQIG+V+V L  IDL +
Sbjct: 220 ESFTFK-------------VPYAEVGSKILTFAVYDFDRFSKHDQIGQVQVPLNSIDLGR 266

Query: 152 TIEEWRELQSVEGE 165
            +E+W++LQS + E
Sbjct: 267 VVEDWKDLQSPDTE 280

Acts as inhibitor of neurotransmitter release. Overexpression leads to a decrease in the amplitude of the excitatory postsynaptic potential in dissected cholinergic and glutaminergic neurons while depletion with antisense oligonucleotides leads to an increase. Overexpression of isoform 1 blocks the reversal of synaptic depression by serotonin in sensory neurons.

Aplysia californica (taxid: 6500)

>sp|P47191|SYT1_CHICK Synaptotagmin-1 OS=Gallus gallus GN=SYT1 PE=2 SV=1

 Score =  174 bits (440), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 13/138 (9%)

Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct: 147 KIQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 206

Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KVA+  +
Sbjct: 207 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTV 253

Query: 148 DLAQTIEEWRELQSVEGE 165
           D     EEWR+LQS E E
Sbjct: 254 DFGHVTEEWRDLQSAEKE 271

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Gallus gallus (taxid: 9031)

>sp|P24506|SY62_DIPOM Synaptotagmin-B OS=Diplobatis ommata GN=P65-B PE=1 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 102/134 (76%), Gaps = 13/134 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF AN L+V +IQA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKV +KTLNP FN
Sbjct: 166 SLDYDFQANQLTVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVQKKTLNPTFN 225

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E+FVFK             VPY +   KTL+ A++DFDRFSKHD IG+V V + ++DL Q
Sbjct: 226 ESFVFK-------------VPYQELGGKTLMMAVYDFDRFSKHDCIGQVTVLMTKVDLGQ 272

Query: 152 TIEEWRELQSVEGE 165
            +EEWR+L+S E E
Sbjct: 273 QLEEWRDLESAEKE 286

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Discopyge ommata (taxid: 7785)

>sp|P21707|SYT1_RAT Synaptotagmin-1 OS=Rattus norvegicus GN=Syt1 PE=1 SV=3

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 13/138 (9%)

Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 144 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 203

Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 204 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 250

Query: 148 DLAQTIEEWRELQSVEGE 165
           D     EEWR+LQS E E
Sbjct: 251 DFGHVTEEWRDLQSAEKE 268

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Rattus norvegicus (taxid: 10116)

>sp|P46096|SYT1_MOUSE Synaptotagmin-1 OS=Mus musculus GN=Syt1 PE=1 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 13/138 (9%)

Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 144 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 203

Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 204 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 250

Query: 148 DLAQTIEEWRELQSVEGE 165
           D     EEWR+LQS E E
Sbjct: 251 DFGHVTEEWRDLQSAEKE 268

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Mus musculus (taxid: 10090)

>sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 13/138 (9%)

Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 142 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 201

Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 202 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 248

Query: 148 DLAQTIEEWRELQSVEGE 165
           D     EEWR+LQS E E
Sbjct: 249 DFGHVTEEWRDLQSAEKE 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
383860584	434	PREDICTED: synaptotagmin 1-like [Megachi	0.685	0.327	0.775	1e-62
357626340	419	synaptotagmin I [Danaus plexippus]	0.685	0.338	0.775	2e-62
12658419	429	synaptotagmin [Manduca sexta]	0.603	0.291	0.868	3e-62
332018156	436	Synaptotagmin 1 [Acromyrmex echinatior]	0.599	0.284	0.867	3e-62
270006365	444	synaptotagmin [Tribolium castaneum]	0.599	0.279	0.875	3e-62
225543472	444	synaptotagmin 1 [Tribolium castaneum] gi	0.599	0.279	0.875	4e-62
237648990	431	synaptotagmin I [Bombyx mori] gi|2237024	0.685	0.329	0.775	4e-62
333033753	424	synaptotagmin 1 [Gryllus bimaculatus]	0.599	0.292	0.860	1e-61
193713831	466	PREDICTED: synaptotagmin 1 isoform 1 [Ac	0.599	0.266	0.860	1e-61
307206115	429	Synaptotagmin [Harpegnathos saltator]	0.599	0.289	0.852	1e-61

>gi|383860584|ref|XP_003705769.1| PREDICTED: synaptotagmin 1-like [Megachile rotundata]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 130/160 (81%), Gaps = 18/160 (11%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 163 LEYDFNTNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 222

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TF FK            GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQT
Sbjct: 223 TFTFK------------GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQT 270

Query: 153 IEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVG 192
           IEEWRELQSVEGEGGQ    D   G++    +  Y+P  G
Sbjct: 271 IEEWRELQSVEGEGGQ----DNKLGDICFSLR--YVPTAG 304

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626340|gb|EHJ76466.1| synaptotagmin I [Danaus plexippus]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 131/160 (81%), Gaps = 18/160 (11%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSLSVTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 148 LEYDFNSNSLSVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 207

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TFVFK             VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQT
Sbjct: 208 TFVFK------------SVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQT 255

Query: 153 IEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVG 192
           IEEWRELQSVEGEGGQ    D   G++    +  Y+P  G
Sbjct: 256 IEEWRELQSVEGEGGQ----DNKLGDICFSLR--YVPTAG 289

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12658419|gb|AAK01129.1|AF331039_1 synaptotagmin [Manduca sexta]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 123/137 (89%), Gaps = 12/137 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct: 161 LEYDFNSNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 220

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TFVFK             VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQT
Sbjct: 221 TFVFK------------NVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQT 268

Query: 153 IEEWRELQSVEGEGGQV 169
           IEEWRELQSVEGEGGQ+
Sbjct: 269 IEEWRELQSVEGEGGQL 285

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018156|gb|EGI58762.1| Synaptotagmin 1 [Acromyrmex echinatior]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/136 (86%), Positives = 122/136 (89%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP+FNE
Sbjct: 165 LEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPIFNE 224

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TF FK            GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQT
Sbjct: 225 TFTFK------------GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQT 272

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWRELQSVEGEGGQ
Sbjct: 273 IEEWRELQSVEGEGGQ 288

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006365|gb|EFA02813.1| synaptotagmin [Tribolium castaneum]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 121/136 (88%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct: 174 LEYDFNQNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 233

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TFVFK             +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQT
Sbjct: 234 TFVFK------------NIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQT 281

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWRELQSVEGEGGQ
Sbjct: 282 IEEWRELQSVEGEGGQ 297

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225543472|ref|NP_001139384.1| synaptotagmin 1 [Tribolium castaneum] gi|223702450|gb|ACN21656.1| synaptotagmin I isoform A [Tribolium castaneum]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 121/136 (88%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct: 174 LEYDFNQNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 233

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TFVFK             +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQT
Sbjct: 234 TFVFK------------NIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQT 281

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWRELQSVEGEGGQ
Sbjct: 282 IEEWRELQSVEGEGGQ 297

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237648990|ref|NP_001153672.1| synaptotagmin I [Bombyx mori] gi|223702452|gb|ACN21657.1| synaptotagmin I isoform A [Bombyx mori]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 131/160 (81%), Gaps = 18/160 (11%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct: 160 LEYDFNSNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 219

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TFVFK             VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQT
Sbjct: 220 TFVFK------------NVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQT 267

Query: 153 IEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVG 192
           IEEWRELQSVEGEGGQ    D   G++    +  Y+P  G
Sbjct: 268 IEEWRELQSVEGEGGQ----DNKLGDICFSLR--YVPTAG 301

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|333033753|dbj|BAK23253.1| synaptotagmin 1 [Gryllus bimaculatus]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 121/136 (88%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSL+VTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct: 154 LEYDFNSNSLAVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 213

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TF FK             VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQT
Sbjct: 214 TFTFK------------NVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQT 261

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWRELQSVEGEGGQ
Sbjct: 262 IEEWRELQSVEGEGGQ 277

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713831|ref|XP_001944713.1| PREDICTED: synaptotagmin 1 isoform 1 [Acyrthosiphon pisum] gi|328711543|ref|XP_003244566.1| PREDICTED: synaptotagmin 1 isoform 2 [Acyrthosiphon pisum]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 120/136 (88%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           +EYDF  N+LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 196 MEYDFQGNTLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 255

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TF FK            G+PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQT
Sbjct: 256 TFQFK------------GIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQT 303

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWRELQSVEGEGGQ
Sbjct: 304 IEEWRELQSVEGEGGQ 319

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206115|gb|EFN84195.1| Synaptotagmin [Harpegnathos saltator]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/136 (85%), Positives = 122/136 (89%), Gaps = 12/136 (8%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           LEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+P+FNE
Sbjct: 158 LEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPIFNE 217

Query: 93  TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
           TF FK            GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQT
Sbjct: 218 TFTFK------------GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQT 265

Query: 153 IEEWRELQSVEGEGGQ 168
           IEEWRELQSVEGEGGQ
Sbjct: 266 IEEWRELQSVEGEGGQ 281

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
FB|FBgn0004242	474	Syt1 "Synaptotagmin 1" [Drosop	0.599	0.261	0.830	1.3e-54
MGI|MGI:99666	422	Syt2 "synaptotagmin II" [Mus m	0.603	0.296	0.652	2.2e-41
UNIPROTKB|G5E6N8	417	SYT2 "Uncharacterized protein"	0.603	0.299	0.652	3.6e-41
UNIPROTKB|Q8N9I0	419	SYT2 "Synaptotagmin-2" [Homo s	0.603	0.298	0.652	3.6e-41
UNIPROTKB|F1S5A0	362	SYT2 "Uncharacterized protein"	0.603	0.345	0.652	3.6e-41
RGD|3804	422	Syt2 "synaptotagmin II" [Rattu	0.603	0.296	0.652	3.6e-41
UNIPROTKB|P29101	422	Syt2 "Synaptotagmin-2" [Rattus	0.603	0.296	0.652	3.6e-41
UNIPROTKB|P41823	428	SYT1 "Synaptotagmin-1" [Aplysi	0.632	0.306	0.590	2e-40
UNIPROTKB|P47191	424	SYT1 "Synaptotagmin-1" [Gallus	0.603	0.294	0.623	8.7e-40
UNIPROTKB|P48018	422	SYT1 "Synaptotagmin-1" [Bos ta	0.603	0.296	0.623	1.4e-39

FB|FBgn0004242 Syt1 "Synaptotagmin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 113/136 (83%), Positives = 119/136 (87%)

Query:    33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
             LEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFNE
Sbjct:   200 LEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNE 259

Query:    93 TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 152
             TF FK             +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LC IDLAQT
Sbjct:   260 TFTFK------------SLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQT 307

Query:   153 IEEWRELQSVEGEGGQ 168
             IEEWR+L SVEGEGGQ
Sbjct:   308 IEEWRDLVSVEGEGGQ 323

GO:0007269 "neurotransmitter secretion" evidence=NAS;IMP

GO:0016192 "vesicle-mediated transport" evidence=IMP;TAS

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0030285 "integral to synaptic vesicle membrane" evidence=NAS

GO:0005509 "calcium ion binding" evidence=ISS;IDA

GO:0006887 "exocytosis" evidence=NAS

GO:0005544 "calcium-dependent phospholipid binding" evidence=TAS

GO:0048489 "synaptic vesicle transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=ISS;IDA;NAS

GO:0016020 "membrane" evidence=IEA;NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0048488 "synaptic vesicle endocytosis" evidence=IDA;IMP

GO:0005215 "transporter activity" evidence=IEA

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IDA

GO:0060024 "rhythmic synaptic transmission" evidence=IDA

MGI|MGI:99666 Syt2 "synaptotagmin II" [Mus musculus (taxid:10090)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 90/138 (65%), Positives = 103/138 (74%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:   145 KLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 204

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             P FNETF FKV             PY +   KTLV AI+DFDRFSKHD IGEVKV +  +
Sbjct:   205 PAFNETFTFKV-------------PYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTV 251

Query:   148 DLAQTIEEWRELQSVEGE 165
             DL Q IEEWR+LQ  E E
Sbjct:   252 DLGQPIEEWRDLQGGEKE 269

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G5E6N8 SYT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 90/138 (65%), Positives = 103/138 (74%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:   140 KLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 199

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             P FNETF FKV             PY +   KTLV AI+DFDRFSKHD IGEVKV +  +
Sbjct:   200 PAFNETFTFKV-------------PYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTV 246

Query:   148 DLAQTIEEWRELQSVEGE 165
             DL Q IEEWR+LQ  E E
Sbjct:   247 DLGQPIEEWRDLQGGEKE 264

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q8N9I0 SYT2 "Synaptotagmin-2" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 90/138 (65%), Positives = 103/138 (74%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:   142 KLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 201

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             P FNETF FKV             PY +   KTLV AI+DFDRFSKHD IGEVKV +  +
Sbjct:   202 PAFNETFTFKV-------------PYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTV 248

Query:   148 DLAQTIEEWRELQSVEGE 165
             DL Q IEEWR+LQ  E E
Sbjct:   249 DLGQPIEEWRDLQGGEKE 266

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1S5A0 SYT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 90/138 (65%), Positives = 103/138 (74%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:    85 KLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 144

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             P FNETF FKV             PY +   KTLV AI+DFDRFSKHD IGEVKV +  +
Sbjct:   145 PAFNETFTFKV-------------PYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTV 191

Query:   148 DLAQTIEEWRELQSVEGE 165
             DL Q IEEWR+LQ  E E
Sbjct:   192 DLGQPIEEWRDLQGGEKE 209

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

RGD|3804 Syt2 "synaptotagmin II" [Rattus norvegicus (taxid:10116)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 90/138 (65%), Positives = 103/138 (74%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:   145 KLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 204

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             P FNETF FKV             PY +   KTLV AI+DFDRFSKHD IGEVKV +  +
Sbjct:   205 PAFNETFTFKV-------------PYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTV 251

Query:   148 DLAQTIEEWRELQSVEGE 165
             DL Q IEEWR+LQ  E E
Sbjct:   252 DLGQPIEEWRDLQGGEKE 269

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA;ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA;ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0019905 "syntaxin binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=TAS

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|P29101 Syt2 "Synaptotagmin-2" [Rattus norvegicus (taxid:10116)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 90/138 (65%), Positives = 103/138 (74%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:   145 KLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 204

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             P FNETF FKV             PY +   KTLV AI+DFDRFSKHD IGEVKV +  +
Sbjct:   205 PAFNETFTFKV-------------PYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTV 251

Query:   148 DLAQTIEEWRELQSVEGE 165
             DL Q IEEWR+LQ  E E
Sbjct:   252 DLGQPIEEWRDLQGGEKE 269

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|P41823 SYT1 "Synaptotagmin-1" [Aplysia californica (taxid:6500)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 85/144 (59%), Positives = 107/144 (74%)

Query:    22 TDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKV 81
             +++ + K + +L+YDF    LSV VIQA DLP +DM GTSDPYVKVYLLPDKKKK+ETKV
Sbjct:   150 SEVKLGKLQFSLDYDFQKGELSVNVIQAADLPGMDMSGTSDPYVKVYLLPDKKKKYETKV 209

Query:    82 HRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 141
             HRKTLNPVFNE+F FKV             PYA+  +K L FA++DFDRFSKHDQIG+V+
Sbjct:   210 HRKTLNPVFNESFTFKV-------------PYAEVGSKILTFAVYDFDRFSKHDQIGQVQ 256

Query:   142 VALCQIDLAQTIEEWRELQSVEGE 165
             V L  IDL + +E+W++LQS + E
Sbjct:   257 VPLNSIDLGRVVEDWKDLQSPDTE 280

GO:0000149 "SNARE binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0016079 "synaptic vesicle exocytosis" evidence=IDA

GO:0030285 "integral to synaptic vesicle membrane" evidence=IDA

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=IDA

UNIPROTKB|P47191 SYT1 "Synaptotagmin-1" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/138 (62%), Positives = 100/138 (72%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLN
Sbjct:   147 KIQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLN 206

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             PVFNE F FKV             PY++   KTLV A++DFDRFSKHD IGE KVA+  +
Sbjct:   207 PVFNEQFTFKV-------------PYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTV 253

Query:   148 DLAQTIEEWRELQSVEGE 165
             D     EEWR+LQS E E
Sbjct:   254 DFGHVTEEWRDLQSAEKE 271

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

UNIPROTKB|P48018 SYT1 "Synaptotagmin-1" [Bos taurus (taxid:9913)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 86/138 (62%), Positives = 99/138 (71%)

Query:    28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
             K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct:   145 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 204

Query:    88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
             PVFNE F FKV             PY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct:   205 PVFNEQFTFKV-------------PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 251

Query:   148 DLAQTIEEWRELQSVEGE 165
             D     EEWR+LQS E E
Sbjct:   252 DFGHVTEEWRDLQSAEKE 269

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29101	SYT2_RAT	No assigned EC number	0.6641	0.5845	0.2867	yes	N/A
P46097	SYT2_MOUSE	No assigned EC number	0.6641	0.5845	0.2867	yes	N/A
Q8N9I0	SYT2_HUMAN	No assigned EC number	0.6641	0.5845	0.2887	yes	N/A
P21521	SY65_DROME	No assigned EC number	0.8308	0.5990	0.2616	yes	N/A
Q5R4J5	SYT1_PONAB	No assigned EC number	0.6231	0.6038	0.2983	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-74
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-47
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-35
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-35
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	3e-33
pfam00168	85	pfam00168, C2, C2 domain	3e-30
cd00030	102	cd00030, C2, C2 domain	4e-30
smart00239	101	smart00239, C2, Protein kinase C conserved region	5e-30
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-26
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-26
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	3e-26
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	5e-26
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	3e-25
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	5e-24
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	1e-23
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-23
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-23
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	2e-23
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-23
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	9e-23
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	1e-21
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	3e-21
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	4e-21
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	9e-20
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-18
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	3e-18
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	6e-18
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-15
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-14
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-14
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-13
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-13
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	6e-13
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	4e-12
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	6e-12
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-11
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	2e-11
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-11
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	5e-11
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	5e-11
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	6e-11
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	7e-11
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-10
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-10
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	3e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	4e-10
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	4e-10
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	2e-09
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	4e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	7e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	1e-08
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	2e-08
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	2e-08
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	3e-08
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	3e-08
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	5e-08
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	7e-08
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	1e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-07
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-07
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	8e-07
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-06
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-06
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-06
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	2e-06
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-06
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	5e-06
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	5e-06
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	6e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	7e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	8e-06
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	8e-06
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	3e-05
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	7e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	8e-05
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	1e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	1e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-04
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	7e-04
cd08677	118	cd08677, C2A_Synaptotagmin-13, C2 domain	0.001
cd08691	137	cd08691, C2_NEDL1-like, C2 domain present in NEDL1	0.004

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score =  220 bits (562), Expect = 1e-74
 Identities = 87/130 (66%), Positives = 102/130 (78%), Gaps = 13/130 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF +N L+V +IQA DLPA+DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN
Sbjct: 8   SLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF FK             VPY++  NKTLVF+++DFDRFSKHD IGEV+V L  +DL  
Sbjct: 68  ETFTFK-------------VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH 114

Query: 152 TIEEWRELQS 161
             EEWR+L+S
Sbjct: 115 VTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score =  151 bits (383), Expect = 3e-47
 Identities = 57/133 (42%), Positives = 86/133 (64%), Gaps = 12/133 (9%)

Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           + + ++ YDF  ++L++ +++A +LPA D  GTSDP+VK+YLLPDKK K ETKV RK LN
Sbjct: 4   RIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLN 63

Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           P +NETF+F            +G PY     + L   + D+DRFS++D IGEV + L ++
Sbjct: 64  PHWNETFLF------------EGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111

Query: 148 DLAQTIEEWRELQ 160
           DL +    W++L+
Sbjct: 112 DLTEEQTFWKDLK 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score =  120 bits (304), Expect = 2e-35
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 14/130 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
           +++YD     L+V++I+A +LP         DP+VKV LLPD+++  ++KV RKT NP F
Sbjct: 6   SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNF 65

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           +ETFVF+VSF              +   +TL  +++D DRFS+H  IG V   L  +DL 
Sbjct: 66  DETFVFQVSFK-------------ELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV 112

Query: 151 QTIEEWRELQ 160
           +    WR+L+
Sbjct: 113 KGGVVWRDLE 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score =  120 bits (303), Expect = 3e-35
 Identities = 53/130 (40%), Positives = 83/130 (63%), Gaps = 13/130 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +LEYD +   L+V +IQA +L   D  GT+DPY KV LLPD+    ++K+H+KTLNP F+
Sbjct: 8   SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E+FVF              VP  +   +TL   ++DFD+FS+ + IG V++ L ++DL++
Sbjct: 68  ESFVF-------------EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE 114

Query: 152 TIEEWRELQS 161
            ++ WR++QS
Sbjct: 115 KLDLWRKIQS 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score =  115 bits (290), Expect = 3e-33
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 15/133 (11%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
           +L Y+    +L V +I+  DLPA+D   GTSDPYVK+ LLP+K+ K +T+V RKT NPV+
Sbjct: 8   SLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           +ETF F             G+PY    + +L FA+  FDR+S+ D IGEV   L   DL 
Sbjct: 68  DETFTF------------YGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL 115

Query: 151 Q--TIEEWRELQS 161
               +   RE+Q 
Sbjct: 116 NEGELLVSREIQP 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  106 bits (267), Expect = 3e-30
 Identities = 46/100 (46%), Positives = 58/100 (58%), Gaps = 15/100 (15%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L VTVI A++LP  D+ G SDPYVKV L   KK   +TKV + TLNPV+NETF F+V+  
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 141
             +E               L   ++D+DRF K D IGEV 
Sbjct: 61  ELAE---------------LRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  106 bits (266), Expect = 4e-30
 Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 18/119 (15%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L VTVI+A +LPA D+ G SDPYVKV L    K+KF+TKV + TLNPV+NETF F V   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVL-- 56

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-DLAQTIEEWREL 159
                        D  + TL   ++D DRFSK D +GEV++ L ++ D  +  E W  L
Sbjct: 57  -------------DPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  106 bits (266), Expect = 5e-30
 Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 15/116 (12%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
           +L+V +I A +LP  D GG SDPYVKV L  D K+K +TKV + TLNPV+NETF F+V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
              +E               L   ++D DRF + D IG+V + L  + L    E+ 
Sbjct: 61  PELAE---------------LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 98.9 bits (247), Expect = 1e-26
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           T+ Y      L VTV +  +LP  D     DPYV++YLLPDK K  + +T V +  LNPV
Sbjct: 8   TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV 67

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAI-FDFDRFSKH-DQIGEVKVALCQI 147
           F+ETF F VS               +   +TL  A+       S+    +G+V + L  +
Sbjct: 68  FDETFEFPVS-------------LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114

Query: 148 DLAQTIEEWRELQ 160
           DL++   +W +L 
Sbjct: 115 DLSKGFTQWYDLT 127

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 98.8 bits (247), Expect = 1e-26
 Identities = 45/110 (40%), Positives = 57/110 (51%), Gaps = 15/110 (13%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
           L Y   A  L+V V++A +LP  D  G SDPYVKV LL   K  KK +T V + TLNPVF
Sbjct: 7   LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
           NE F F V      EV             +LV  + D D   +++ IG+V
Sbjct: 67  NEAFSFDVPAEQLEEV-------------SLVITVVDKDSVGRNEVIGQV 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 97.4 bits (243), Expect = 3e-26
 Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 15/125 (12%)

Query: 30  EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLN 87
           E TL YD   ++L  T+I+A+ L A+D  G SDPYVK+ LLP   K  K  TK   KT N
Sbjct: 5   EFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRN 64

Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           P FNET  +             G+   D   KTL   + D DRF  +D +GE ++ L ++
Sbjct: 65  PEFNETLTY------------YGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKL 111

Query: 148 DLAQT 152
              QT
Sbjct: 112 KPNQT 116

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 96.9 bits (242), Expect = 5e-26
 Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 23/134 (17%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKF--ETKVHRKTLNPVF 90
           L YD   + L VTV+QA DLP  D G   +PYVKVYLLPD+ +K    TK  +KTLNP +
Sbjct: 9   LWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEW 68

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           N+TF +              V       +TL   ++D+DR  ++D +GE       IDLA
Sbjct: 69  NQTFEYS------------NVRRETLKERTLEVTVWDYDRDGENDFLGE-----VVIDLA 111

Query: 151 QTI----EEWRELQ 160
             +      W  LQ
Sbjct: 112 DALLDDEPHWYPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 94.6 bits (236), Expect = 3e-25
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 16/128 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 88
           +L Y++   SL V + +  +L   D     S+PYVKVYLLPDK K  K +T V + T NP
Sbjct: 6   SLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNP 65

Query: 89  VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
           VFNET  + +S   +S++            +TL  +++  DRF ++  +GEV++ L   D
Sbjct: 66  VFNETLKYHIS---KSQL----------ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112

Query: 149 LAQTIEEW 156
           L     EW
Sbjct: 113 LDSQQSEW 120

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 91.5 bits (228), Expect = 5e-24
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L+V VI AE+LP+ D  G SDP+VK YL  + +K F+TK  +KTLNPV+NE+F   V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYL--NGEKVFKTKTIKKTLNPVWNESFEVPV--P 56

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161
           +R                 L   ++D+DR  K D +G   + L  ++  +T E    L  
Sbjct: 57  SRV-------------RAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDG 103

Query: 162 VEGEGGQVYYL 172
             G      +L
Sbjct: 104 QGGGKLGAVFL 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 91.3 bits (227), Expect = 1e-23
 Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 17/114 (14%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K  KK +T + ++TLNP 
Sbjct: 7   SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY 66

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKT-LVFAIFDFDRFSKHDQIGEVKV 142
           +NE+F F+V        FEQ       + K  L+  + D+DR  K+D IG+V +
Sbjct: 67  YNESFSFEVP-------FEQ-------IQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 90.8 bits (226), Expect = 2e-23
 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 34  EYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----KKFETKVHRKTLNPV 89
            Y  +  SL V ++ A +L  LD  G+SDP+VKV LLP          +T+V +KTL P+
Sbjct: 10  YYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPL 69

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           F+E+F F V     S           A+   L+F + D+D    +D  GE  + L  I
Sbjct: 70  FDESFEFNVPPEQCSV--------EGAL---LLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 90.6 bits (225), Expect = 2e-23
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 15/111 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-PDKK-KKFETKVHRKTLNPV 89
           +L Y+  AN ++V +I+A +L A+D+ GTSDPYVKV+L+  DK+ +K +T + ++TLNPV
Sbjct: 7   SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
           FNE+F+F              +P       TL+  + D DR S++D IG++
Sbjct: 67  FNESFIFN-------------IPLERLRETTLIITVMDKDRLSRNDLIGKI 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 90.4 bits (225), Expect = 2e-23
 Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 18/136 (13%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 90
           L+     N L+V V +A++L  +D  G SDPYVK+ L+PD   + K +TK  +KTLNPV+
Sbjct: 6   LKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVW 65

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NETF F +                   ++ L   ++D+DR +++D +G +   + ++ + 
Sbjct: 66  NETFTFDLK--------------PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL-IK 110

Query: 151 QTIEEW-RELQSVEGE 165
             ++ W + L   EGE
Sbjct: 111 MPVDGWYKLLNQEEGE 126

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 89.8 bits (223), Expect = 3e-23
 Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 16/131 (12%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           L+YD     L V VIQ +DL A D     SDPYVK YLLPDK    K +T V +KTLNPV
Sbjct: 8   LDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPV 67

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNET  +KV    R E+  +           L  +++  D   ++  +GEV+V L   D 
Sbjct: 68  FNETLRYKV---EREELPTR----------VLNLSVWHRDSLGRNSFLGEVEVDLGSWDW 114

Query: 150 AQTIEEWRELQ 160
           + T   W  LQ
Sbjct: 115 SNTQPTWYPLQ 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 89.7 bits (223), Expect = 9e-23
 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 14/124 (11%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVS 99
           L V V +A++LPAL  GGTSD +VK YLLPDK K  K +T V +K++NPV+N TFV+   
Sbjct: 29  LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD-- 86

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
                     GV   D     L   ++D D+ S +D +G V++ L          +W + 
Sbjct: 87  ----------GVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136

Query: 160 QSVE 163
              E
Sbjct: 137 TGEE 140

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 85.6 bits (212), Expect = 1e-21
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 17/130 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y    N L+V V++A  LP +D+ G +DPYVKV L   KK+  K +T V + TLNPV
Sbjct: 7   SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE+FVF              +P  +  + ++ F + D DR +K++ IG  ++ L     
Sbjct: 67  FNESFVFD-------------IPSEELEDISVEFLVLDSDRVTKNEVIG--RLVLGPKAS 111

Query: 150 AQTIEEWREL 159
                 W+E+
Sbjct: 112 GSGGHHWKEV 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 84.7 bits (210), Expect = 3e-21
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 15/110 (13%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 90
           L Y+     L V +I+  +L A+D  G SDP+VK+YL PD  KK K +T+V +KTLNP F
Sbjct: 6   LMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEF 65

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
           NE F +              + ++D   KTL   ++D D    +D IG +
Sbjct: 66  NEEFFYD-------------IKHSDLAKKTLEITVWDKDIGKSNDYIGGL 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 84.2 bits (209), Expect = 4e-21
 Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
             EYD +A  L+VTVI+A+D+P  D GG S   V + LLP KK++ +TKV R   NPVFN
Sbjct: 8   AFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRGP-NPVFN 66

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF F       S V  + +      N  L F ++  +R  K   IGE  V L Q++L  
Sbjct: 67  ETFTF-------SRVEPEELN-----NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG 114

Query: 152 TIEEWRELQ 160
               W  L+
Sbjct: 115 ETTVWLTLE 123

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 80.6 bits (199), Expect = 9e-20
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 16/132 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGT-SDPYVKVYLLPDK--KKKFETKVHRKTLNP 88
           +L YD+   SL+V V +  +L   D     S+PYVK YLLPDK  + K +T + R T NP
Sbjct: 7   SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66

Query: 89  VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
           V+NET  + +S    S++            +TL  +++ +DRF ++  +GEV++ L   +
Sbjct: 67  VYNETLKYSIS---HSQL----------ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113

Query: 149 LAQTIEEWRELQ 160
                EE   L 
Sbjct: 114 FDSQHEECLPLH 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKV-YLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
           LSV V++  DL AL   GT DP+ +V      K     TKV +KT NP F+E F F+++ 
Sbjct: 1   LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160
               E     V   D     L   ++     S  D +GEV++ L  +  A + + W  LQ
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 76.6 bits (189), Expect = 3e-18
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 15/122 (12%)

Query: 37  FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNETF 94
           +   +L V V+ A++LP LD G   DPYVK YLLPD  K  K +TKV RKT NP FNE  
Sbjct: 10  YKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68

Query: 95  VFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 154
           V+             G+P  D   + L  +++  D   +++ +G V + L ++DL+Q  E
Sbjct: 69  VY------------DGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE 116

Query: 155 EW 156
           +W
Sbjct: 117 KW 118

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 76.0 bits (187), Expect = 6e-18
 Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 15/113 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
           +L Y   A  L++T+I+A +L A+D+ G SDPYVKV L+ + +  KK +T V + TLNP 
Sbjct: 6   SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV 142
           +NE  VF V   N   V             +L+ A+ D+DR   ++ IG  +V
Sbjct: 66  YNEALVFDVPPENVDNV-------------SLIIAVVDYDRVGHNELIGVCRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 67.6 bits (166), Expect = 8e-15
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 25/108 (23%)

Query: 44  VTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH--RKTLNPVFNETFVFKVSFL 101
           V V++A +L   D  G SDPY+K+ L    KKK   + +    TLNPVF + F  + +  
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLG---KKKINDRDNYIPNTLNPVFGKMFELEATL- 59

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
                     P     N  L  ++ D+D     D IGE       IDL
Sbjct: 60  ----------P----GNSILKISVMDYDLLGSDDLIGETV-----IDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
            L + + +  +L A D GGTSDPYVK       K  +++K   K LNPV++E F   +  
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKFTLPI-- 56

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 154
                         + + + L   +FD+DR    D +G   V L  ++L +  E
Sbjct: 57  --------------EDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTE 96

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 23/180 (12%)

Query: 15   LNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK 74
              + V ++  P+      +E   N+  L++ +   E+LP+ D  G SDP+VK++L  ++K
Sbjct: 1015 AKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFL--NEK 1072

Query: 75   KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH 134
              ++TKV +KTLNPV+NE F  +V  LNR                 L   + D+D   K+
Sbjct: 1073 SVYKTKVVKKTLNPVWNEEFTIEV--LNRV-------------KDVLTINVNDWDSGEKN 1117

Query: 135  DQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVK 194
            D +G       +IDL++         ++  +G     LDG   +     ++ Y  NV  K
Sbjct: 1118 DLLGT-----AEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTL-HPGFNFRSKYALNVSRK 1171

Length = 1227

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 15/111 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
           +L Y  +A  L+V +I+A+ L   DM   SDP+VK+ L+   K  K  +T   R T++P 
Sbjct: 6   SLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF 65

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
           +NE+F FK             VP  +  N +LVF ++  +  S +D IG +
Sbjct: 66  YNESFSFK-------------VPQEELENVSLVFTVYGHNVKSSNDFIGRI 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 25/128 (19%)

Query: 42  LSVTVIQAEDLPALDMG------GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV 95
           L + VI+A+DL A D        G SDPYV V +     + F++KV ++ LNP +NE + 
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEVY- 58

Query: 96  FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155
                    E     VP      + L   +FD D   K D +G + + L  ++    I+E
Sbjct: 59  ---------EAVVDEVP-----GQELEIELFDEDP-DKDDFLGRLSIDLGSVEKKGFIDE 103

Query: 156 WRELQSVE 163
           W  L+ V+
Sbjct: 104 WLPLEDVK 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 30/122 (24%)

Query: 44  VTVIQAEDLPAL--------DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV 95
           + +    DLP L        DM    DP+V +      ++ F T   R TLNPVFNE   
Sbjct: 5   MEIKSITDLPPLKNMTRTGFDM----DPFVIISF---GRRVFRTSWRRHTLNPVFNERLA 57

Query: 96  FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ-IDLAQTIE 154
           F+V              Y    N  + F + D D+FS +D +    +++ + ++ A   +
Sbjct: 58  FEV--------------YPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPD 103

Query: 155 EW 156
             
Sbjct: 104 PE 105

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 23/126 (18%)

Query: 42  LSVTVIQAEDLPALDMG--GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
           L V V++A+DL A D    G SDPY  + +     ++F+T+    TLNP +N    F   
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEF--- 56

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE---W 156
                       P   A N+ L   ++D DRF+  D +GE  +AL ++       +   W
Sbjct: 57  ------------PIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKW 104

Query: 157 RELQSV 162
             L+S 
Sbjct: 105 ITLKST 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKV 98
           LSV VI+  DL      GT DPY  V L+   KK   K  TKV +KT NP F+E F F V
Sbjct: 2   LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKR-TKVKKKTNNPQFDEAFYFDV 58

Query: 99  SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WR 157
           +  +  E  +  +P  DA    L   ++          +GEV++ L  +DL     + W 
Sbjct: 59  TIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWY 118

Query: 158 ELQ 160
            LQ
Sbjct: 119 FLQ 121

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 24/133 (18%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
           SL + +++A++LP+    GT DPY  V L  D+ +   TK   + LNP + E FVF    
Sbjct: 1   SLRLRILEAKNLPS---KGTRDPYCTVSL--DQVEVARTKT-VEKLNPFWGEEFVFDD-- 52

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160
                      P  D    TL F   D    SK   I   KVAL ++DL Q  +EW  L 
Sbjct: 53  -----------PPPDVTFFTLSFYNKDKR--SKDRDIVIGKVALSKLDLGQGKDEWFPLT 99

Query: 161 SV---EGEGGQVY 170
            V       G V 
Sbjct: 100 PVDPDSEVQGSVR 112

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
          +L Y   A  L+V V++A +L   +   T+DP+VKVYLL D +K  K +T V R   NP+
Sbjct: 7  SLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI 66

Query: 90 FNETFVFKVS 99
          FNE  +F V 
Sbjct: 67 FNEAMIFSVP 76

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 42  LSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
           L VT+ +A DLP  D G G+SDPYV        K  + T++ RK LNPV+ ET+   V  
Sbjct: 3   LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV-- 60

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
                      P      + L   ++D DRF+  D++G V++ L
Sbjct: 61  ----------TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDL 94

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 57.2 bits (139), Expect = 5e-11
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 43  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN 102
            V VI+A  L     GG  DP VKV +   KK    T V + T  P +NE F F     +
Sbjct: 7   RVRVIEARQLV----GGNIDPVVKVEVGGQKKY---TSVKKGTNCPFYNEYFFFNF-HES 58

Query: 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV 142
             E+F          +K +  +++D         IG  K+
Sbjct: 59  PDELF----------DKIIKISVYDSRSLRSDTLIGSFKL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 20/107 (18%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----KKFETKVHRKTLNPVFNETFVFK 97
           L V V+   DL   D+ G SDPYVK+ L            +TK  +KTLNP +NE F F+
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 98  VSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
           V   N  E            ++ L+F +FD +R ++ D +G+V+V L
Sbjct: 62  V---NPRE------------HR-LLFEVFDENRLTRDDFLGQVEVPL 92

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 16/104 (15%)

Query: 42  LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
           L V V+ A DLP +D     +D +V+V         ++T V +K+LNPV+N         
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWN--------- 48

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
              SE F   V   +  ++ L   + D D +S +D IG+V + L
Sbjct: 49  ---SEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDL 89

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 20/103 (19%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V V++  +L   D   +SDPYV + L   K K   T+V +K LNPV+NE     V   
Sbjct: 4   LKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVK---TRVIKKNLNPVWNEELTLSVP-- 57

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
                              L   +FD D FSK D +GE ++ L
Sbjct: 58  --------------NPMAPLKLEVFDKDTFSKDDSMGEAEIDL 86

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 20/131 (15%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           +++ +++ ++LP +D  G SDPYVK  L     +K+++KV  KTLNP + E F   + F 
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLHL-FD 57

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161
           ++S++ E                ++D D   K + IG  ++ L  +   QT     EL+ 
Sbjct: 58  DQSQILE--------------IEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE- 102

Query: 162 VEGEGGQVYYL 172
            +GEG  +  L
Sbjct: 103 -DGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 18/119 (15%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L   V++A DL   D  GTSDP+V+V+      +  ET V +K+  P +NE F F++   
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFELM-- 56

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160
                       AD+    L   ++D+D  SK+D +G+V  ++  +  A+  E W  L 
Sbjct: 57  ----------EGADSP---LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 19/106 (17%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V VI+A  L A D+GG SDP+  + L+     + +T    KTLNP +N+ F F +   
Sbjct: 3   LQVKVIRASGLAAADIGGKSDPFCVLELVNA---RLQTHTIYKTLNPEWNKIFTFPIK-- 57

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
                          ++  L   ++D D+  K + +G+V + L  I
Sbjct: 58  --------------DIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI 89

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 41  SLSVTVIQAEDLP--ALDMGGTSDPYVKVYLL---PDKKKKFETK-VHRKTLNPVFNETF 94
           +L++ +I  + LP    D G   DPYV+V +     D   KF+TK V     NPV+NETF
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 95  VFKVSF 100
            F V+ 
Sbjct: 63  EFDVTV 68

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 30 EQTLEYDFNANSLSVTVIQAEDLPALDMGGTS-DPYVKVYLLPDKKK--KFETKVHRKTL 86
          E  L Y+F  + L +T+    +L   D       PYVKV LLPDK    K +T V + T+
Sbjct: 5  EFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTV 64

Query: 87 NPVFNETFVFKVS 99
          NPVFNET  + V 
Sbjct: 65 NPVFNETLKYVVE 77

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 19/141 (13%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPV 89
           LEY+     LSV VI+  +   L M    D YVK+ LL    +   K +T + R   +P 
Sbjct: 8   LEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           F ETFVF+V+    SEV             TL+F++++  +  + + IG   + L     
Sbjct: 68  FKETFVFQVALFQLSEV-------------TLMFSVYNKRKMKRKEMIGWFSLGLNSSGE 114

Query: 150 AQTIEEWRELQSVEGEGGQVY 170
            +  E W E+   E +G QV 
Sbjct: 115 EE-EEHWNEM--KESKGQQVC 132

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 21/57 (36%), Positives = 37/57 (64%)

Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV 98
          L+V V++A ++   D+  T D YV+++L     +K  TK  + ++NPV+NETF F++
Sbjct: 2  LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRI 58

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 43 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVF 96
           V V  AE L   D GG +DPYV +     + +   + V + TL+P F+   +F
Sbjct: 6  QVHVHSAEGLSKQDSGGGADPYVIIK---CEGESVRSPVQKDTLSPEFDTQAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 43  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFE---TKVHRKTLNPVFNETFVFKVS 99
           ++ +++AE+L A    G SDPYV    L D   K     T+    TLNP ++E F  +V 
Sbjct: 4   TIRIVRAENLKADSSNGLSDPYV---TLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIG 138
                                +   ++D     KHD  G
Sbjct: 61  AGEPL---------------WISATVWDRSFVGKHDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPV 89
          L YD   +SL ++V Q  +L AL +   S  YV+V LLP        F TK       PV
Sbjct: 7  LRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPV 66

Query: 90 FNETFVFKVS 99
          FNE F   +S
Sbjct: 67 FNEVFRVPIS 76

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 97
          +S+TV+ A+ L A D  GTSDPYV V +   KK+   TK   + LNPV+NE F F+
Sbjct: 3  ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKR---TKTIPQNLNPVWNEKFHFE 55

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 47  IQAEDLPALDMGGTSDPYVKVY-LLPDKKKK--FETKVHRKTLNPVFNETFVFKVSFLNR 103
              + L   D  G SDP++++     D      + T+V + TLNPV+   F   +  L  
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLC- 64

Query: 104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
                      D  ++ +   ++D+D   KHD IGE +  L ++ L  +  E+
Sbjct: 65  ---------NGD-YDRPIKIEVYDYDSSGKHDLIGEFETTLDEL-LKSSPLEF 106

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
          L V V+ A+DL   D  G+S  YV++     KK+   T+   K LNPV+NE  VF VS
Sbjct: 2  LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKR---TRTKPKDLNPVWNEKLVFNVS 56

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 26/83 (31%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--------KKKKFE--------------- 78
           L VTVI+A+ L A D+ G SDPY  + ++P          KK+                 
Sbjct: 30  LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89

Query: 79  ---TKVHRKTLNPVFNETFVFKV 98
              T+V  +TLNPV+NETF F+V
Sbjct: 90  IKVTEVKPQTLNPVWNETFRFEV 112

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 20/122 (16%)

Query: 42  LSVTVIQAEDL-PALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKV 98
           L V VI+A  L           PYVKVYLL  KK   K +TK+ RKTL+P++ +  VF V
Sbjct: 31  LEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90

Query: 99  SFLNRSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWR 157
           S                   KTL   ++ D+ R  K   +G  ++ L  +DL+  +  W 
Sbjct: 91  SP----------------TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWY 134

Query: 158 EL 159
           +L
Sbjct: 135 KL 136

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFE--TKVHRKTLNPVF 90
          L  +     L++ V++A+ L + +  GT + YVK+ L PDK+ +F   T     + NP+F
Sbjct: 5  LSIEGQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF 63

Query: 91 NETFVFKVS 99
          +ETF F V+
Sbjct: 64 HETFSFDVN 72

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 48  QAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVF 107
           QA DL A D  G SDP+ +V  L   +   ET+V ++TL+P +++T +F        EV 
Sbjct: 9   QARDLLAADKSGLSDPFARVSFLNQSQ---ETEVIKETLSPTWDQTLIFD-------EVE 58

Query: 108 EQGVPYADAMNKTLVFA-IFDFDRFSKHDQIG 138
             G P   A N  LV   +FD D   K + +G
Sbjct: 59  LYGSPEEIAQNPPLVVVELFDQDSVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 94
          L + + +A DL  L+  G  DPYV+V  L +   K  T     TLNPV++E  
Sbjct: 3  LRLHIRKANDLKNLEGVGKIDPYVRV--LVNGIVKGRTVTISNTLNPVWDEVL 53

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 31/123 (25%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL------NPVFNETFV 95
           L V +I A+ L   D  G  DPYV +        +  T+  +  +      NP +NE F 
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVII--------QCRTQERKSKVAKGDGRNPEWNEKFK 54

Query: 96  FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155
           F V +       +            L+  I D D FS  D IGE       I L    EE
Sbjct: 55  FTVEYPGWGGDTK------------LILRIMDKDNFSDDDFIGEAT-----IHLKGLFEE 97

Query: 156 WRE 158
             E
Sbjct: 98  GVE 100

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 30/135 (22%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKV-HRKTLNPVFNETFVFKVSF 100
           L V V++A +LP        DPY  + +    KK   TK   R   +P ++E   F+++ 
Sbjct: 3   LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKK---TKTDFRGGQHPEWDEELRFEIT- 58

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE----- 155
                         +     L  A+FD D   K D IG+      ++DL+  ++E     
Sbjct: 59  --------------EDKKPILKVAVFD-DDKRKPDLIGD-----TEVDLSPALKEGEFDD 98

Query: 156 WRELQSVEGEGGQVY 170
           W EL       G+VY
Sbjct: 99  WYELTLKGRYAGEVY 113

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 23/109 (21%)

Query: 47  IQAEDLPALDMGGTSDPYVKVYLLPDKKKKFE----TKVHRKTLNPVFNETFVFKVSFLN 102
           I   +L   D+   SDP+V VY+      ++     T+V +  LNP F  TF        
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTV------ 60

Query: 103 RSEVFEQGVPYADAMNKTLVFAIFDFD----RFSKHDQIGEVKVALCQI 147
               FE+         + L F ++D D      S HD +GE +  L +I
Sbjct: 61  -DYYFEE--------VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 18/110 (16%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK--TLNPVFNETFVFKV 98
           +L +T+I AEDL  +++ G    Y  V++ P  K+   T V R   T NP +NET  F  
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQS--TPVDRDGGT-NPTWNETLRF-- 55

Query: 99  SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI 147
             L+   + +  +         L   ++  +R S  D+ IGEV+V L  +
Sbjct: 56  -PLDERLLQQGRL--------ALTIEVYC-ERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 29/134 (21%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPY--VKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV 98
           SL + +++ ++LPA D+ G+SDPY  VKV    D +    T    KTLNP + E +   +
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCIVKV----DNEVIIRTATVWKTLNPFWGEEYTVHL 56

Query: 99  SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWR 157
                        P       T+ F + D D  S+ D IG+V +    I    + I+ W 
Sbjct: 57  P------------PGF----HTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWM 100

Query: 158 EL------QSVEGE 165
            L      + V+GE
Sbjct: 101 NLTEVDPDEEVQGE 114

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYL----LPDKKKKFETKVHRKTLNPVFNETFVFK 97
           ++V V+ A DL      G   P+V+V L    L DKK+KF TK      +P +NETF F 
Sbjct: 2   VTVKVVAANDL-KWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI 60

Query: 98  VSFLNRSEVFE 108
           +   +  E +E
Sbjct: 61  LGNEDDPESYE 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 15/124 (12%)

Query: 43  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN 102
            VTV+QA  L      GT+D YV + L    K+K+ T V  KT +PV+ E   F++  L 
Sbjct: 2   QVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFELPGLL 58

Query: 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE--EWRELQ 160
            S    +       M++ L+      D+F     +G+V + L  +D  +      W +L+
Sbjct: 59  -SGNGNRATLQLTVMHRNLLG----LDKF-----LGQVSIPLNDLDEDKGRRRTRWFKLE 108

Query: 161 SVEG 164
           S  G
Sbjct: 109 SKPG 112

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
          L Y+   N L+V V++A  L  LD   T   YVKV L+   K  K  +T+V     +P F
Sbjct: 8  LTYNPTLNRLTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSF 66

Query: 91 NETFVFKV 98
          NE+F FKV
Sbjct: 67 NESFSFKV 74

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 25/112 (22%)

Query: 42  LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFE-TKVHRKTLNPVFNETFVFKVS 99
           L+VT+  A  L   D +GGT DPYV   +    +++   TKV + T NPV+NET    V+
Sbjct: 4   LAVTIKSARGLKGSDIIGGTVDPYVTFSI--SNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
            L                   L   ++DF+   K   IG       + DL+ 
Sbjct: 62  SLTEP----------------LNLTVYDFNDKRKDKLIGTA-----EFDLSS 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 31/112 (27%)

Query: 41  SLSVTVIQAEDLPALD---MGGT-----------SDPYVKVYLLPDKKKKFETKVHRKTL 86
                + +AEDLP +D   M               DPYV+V       +K +T V + + 
Sbjct: 1   RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSY 57

Query: 87  NPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIG 138
           NP +NE  VF   F           P    + + +   I D+DR    D IG
Sbjct: 58  NPEWNEQIVFPEMF-----------P---PLCERIKIQIRDWDRVGNDDVIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 20/104 (19%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V +++  DL   +  G SDPY +V +   + K   TKV   TLNP +N +  F V   
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHK---TKVVSDTLNPKWNSSMQFFVK-- 71

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIG--EVKVA 143
                        D     L   +FD D FS  D +G  E++VA
Sbjct: 72  -------------DLEQDVLCITVFDRDFFSPDDFLGRTEIRVA 102

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 21/116 (18%)

Query: 56  DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD 115
              G   PY ++YL  + K  + T+V +KT NP +N +           E     V   D
Sbjct: 8   SKTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNAST----------EFL---VT--D 50

Query: 116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ-IDLAQTIEEWRELQSVEGEGGQVY 170
                +   + D DR      +G V ++L   ID     ++W  L       G++ 
Sbjct: 51  RRKSRVTVVVKD-DRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGN--GQGRIR 103

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 23/122 (18%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V +  A++LP         PYV++  +    +K  +KV  +T NPV+ E F F V   
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVEL-TVGKTTQK--SKVKERTNNPVWEEGFTFLVR-- 56

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWREL 159
                        +  N+ L   + D         +G + + L ++      T+++   L
Sbjct: 57  -------------NPENQELEIEVKDDKTGK---SLGSLTLPLSELLKEPDLTLDQPFPL 100

Query: 160 QS 161
            +
Sbjct: 101 DN 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
           SL + V++A  LP   +     PY  + L  ++ K   TKV R+  NPV++E FVF    
Sbjct: 5   SLQLNVLEAHKLP---VKHVPHPYCVISL--NEVKVARTKV-REGPNPVWSEEFVFD-DL 57

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160
                 F   +      NK          + SK  +I EV V L ++   Q  +EW  L 
Sbjct: 58  PPDVNSFTISL-----SNKA---------KRSKDSEIAEVTVQLSKLQNGQETDEWYPLS 103

Query: 161 S 161
           S
Sbjct: 104 S 104

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 18/103 (17%)

Query: 45  TVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRS 104
            V+  ++LP L   G  D   KV     KKK   T+V    LNPV+NETF + ++     
Sbjct: 1   LVVSLKNLPGL--KGKGDRIAKVTFRGVKKK---TRVLENELNPVWNETFEWPLA----- 50

Query: 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
                G P  D     L   + D+++  ++  IG   V+L  +
Sbjct: 51  -----GSPDPDES---LEIVVKDYEKVGRNRLIGSATVSLQDL 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 13/98 (13%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V  I+A  L   +  G+S+PY  V  + +  +K+++   + T NP ++E F+F++S  
Sbjct: 1   LLVKNIKANGL--SEAAGSSNPYC-VLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-- 55

Query: 102 NRS-----EVFEQGVPYADAMNKTLVFAIFDFDRFSKH 134
             S     EV++ G     + +K L  AI  FD   K+
Sbjct: 56  PNSKELLFEVYDNGKK---SDSKFLGLAIVPFDELRKN 90

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKV-HRKTLNPVFNETFVFKVSF 100
           L VTVI+A+DL   D     + +VK  L     +   T+    +  NP +NE  +F    
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVA-- 56

Query: 101 LNRSEVFE 108
              +E FE
Sbjct: 57  ---AEPFE 61

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 23/126 (18%)

Query: 41  SLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
           SL + + +A++LP         D Y  V L  D+++ F TK   K+L P F E F F++ 
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFEIP 58

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWR 157
              R                 L F I+D D   +   IG  KVA+ + DL      + W 
Sbjct: 59  RTFRH----------------LSFYIYDRDVLRRDSVIG--KVAIKKEDLHKYYGKDTWF 100

Query: 158 ELQSVE 163
            LQ V+
Sbjct: 101 PLQPVD 106

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 20/105 (19%)

Query: 42  LSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
           + V +  AE L   D  + GT DPY+ V      +   +T+V + TLNPV+NETF     
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETF---YI 492

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
            LN             +    L  +++DF+ F     +G  ++ L
Sbjct: 493 LLN-------------SFTDPLNLSLYDFNSFKSDKVVGSTQLDL 524

Length = 1227

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 92
           + V+V +A DL     GG SDPY  V +  +   K+ T     TLNP++NE
Sbjct: 713 IRVSVRKANDLRNEIPGGKSDPYATVLV--NNLVKYRTIYGSSTLNPIWNE 761

Length = 1227

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSF 100
            + +TV+ A+ L   D+    DP+  + +  D  +   T V +KTL+P +NE F      
Sbjct: 1   KVRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDL---T 55

Query: 101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ 136
           +  S +              +   +FD  +F K DQ
Sbjct: 56  VGPSSI--------------ITIQVFDQKKFKKKDQ 77

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176059 cd08677, C2A_Synaptotagmin-13, C2 domain

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-PDKKKKFETKVHRKTLNPVF 90
           +L YD     L V +++AE++    +    + Y+   +   + +K+ +T + +  L+  +
Sbjct: 6   SLSYDKQKAELHVNILEAENI---SVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQW 62

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
            E  VF +         E+          TL   +   DRFS+H  +GE+++ L  + + 
Sbjct: 63  EEELVFPLP--------EEESLDG-----TLTLTLRCCDRFSRHSTLGELRLKLADVSMM 109

Query: 151 QTIEEWREL 159
               +W +L
Sbjct: 110 LGAAQWVDL 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This CD contains the first C2 repeat, C2A, and has a type-I topology. Length = 118

>gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 12/67 (17%)

Query: 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK----------TLNPVF 90
          S S++ +QA +L    M    DPYVK+ + P K+  F    H            T+NPV+
Sbjct: 2  SFSLSGLQARNLKK-GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVW 60

Query: 91 -NETFVF 96
            E FVF
Sbjct: 61 HREQFVF 67

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.92
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.9
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.89
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.89
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.89
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.89
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.89
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.89
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.89
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.89
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.88
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.88
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.88
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.88
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.87
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.87
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.86
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.86
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.85
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.85
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.85
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.85
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.84
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.84
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.84
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.84
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.83
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.83
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.82
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.82
KOG1028|consensus	421		99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.8
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.79
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.79
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.78
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.78
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.78
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.77
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.77
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.76
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.76
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.75
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.75
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.74
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.74
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.74
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.73
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.73
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.72
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.72
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.72
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.72
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.72
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.72
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.72
KOG1028|consensus	421		99.72
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.71
KOG0696|consensus	683		99.71
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.71
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.71
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.7
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
KOG1030|consensus	168		99.69
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.68
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.68
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.68
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.67
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.67
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.66
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.66
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.65
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.65
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.63
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.62
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.62
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.59
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.58
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.56
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.55
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.55
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.55
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.54
PLN02223	537	phosphoinositide phospholipase C	99.52
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.5
PLN03008	868	Phospholipase D delta	99.48
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.47
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.46
PLN02230	598	phosphoinositide phospholipase C 4	99.46
PLN02952	599	phosphoinositide phospholipase C	99.46
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.44
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.44
PLN02222	581	phosphoinositide phospholipase C 2	99.44
PLN02228	567	Phosphoinositide phospholipase C	99.41
KOG0169|consensus	746		99.36
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.33
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.3
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.28
KOG1264|consensus	1267		99.25
KOG2059|consensus	800		99.23
KOG2059|consensus	800		99.18
KOG1011|consensus	1283		99.16
KOG0905|consensus	1639		99.13
PLN02270	808	phospholipase D alpha	99.12
KOG1328|consensus	1103		98.95
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.88
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.81
KOG1013|consensus	362		98.81
KOG1265|consensus	1189		98.73
KOG1011|consensus	1283		98.69
KOG1328|consensus	1103		98.68
KOG1031|consensus	1169		98.53
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.5
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.44
PLN02352	758	phospholipase D epsilon	98.4
KOG2060|consensus	405		98.39
KOG1013|consensus	362		98.34
KOG1326|consensus	1105		98.27
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.14
KOG1326|consensus	1105		98.06
KOG3837|consensus	523		97.95
PLN02964	644	phosphatidylserine decarboxylase	97.32
KOG1327|consensus	529		97.28
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.96
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.49
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.35
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.06
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.03
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.64
PF15627	156	CEP76-C2: CEP76 C2 domain	95.62
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.28
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.15
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.5
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.48
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	93.42
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	92.82
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	92.67
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	88.53
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	84.66
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	84.49
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	83.93
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	83.83

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.92  E-value=5e-24  Score=156.28  Aligned_cols=117  Identities=24%  Similarity=0.489  Sum_probs=105.5

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECC-CCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      ++.++++.|++..+.|+|+|++|++|+   ..|.+||||++.+.++ +..+++|++++++.||.|||+|.|.        
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~--------   69 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP--------   69 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe--------
Confidence            357899999999999999999999998   2466999999999864 3467899999999999999999999        


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                           ++.+++....|.|.|||+++++++++||++.+++.++..+....+|.+|
T Consensus        70 -----v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          70 -----LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             -----CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence                 7888889999999999999999999999999999998777788899765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.90  E-value=5.9e-23  Score=152.97  Aligned_cols=122  Identities=42%  Similarity=0.606  Sum_probs=109.3

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      .|++++++.|++..+.|.|+|++|+||+..+.. |.+||||++.+.|+..  .+++|++++++.+|.|||+|.|.     
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-----   75 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-----   75 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-----
Confidence            378899999999999999999999999998865 8999999999987653  46899999999999999999999     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                              ++..++....|.|+|||++.++++++||++.++|.++........||+|+
T Consensus        76 --------v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          76 --------VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             --------CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence                    55555667899999999999999999999999999998877888999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.89  E-value=3.2e-22  Score=149.03  Aligned_cols=121  Identities=35%  Similarity=0.572  Sum_probs=108.3

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~-~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      |++++++.|++..+.|.|+|++|+||+..+. .+.+||||++.+.|++.  .+++|++++++.+|.|||+|.|.      
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~------   75 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS------   75 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE------
Confidence            6789999999999999999999999998765 47899999999987653  47899999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                             ++..++....|.|.|||++.++++++||++.++|.++........|++|+
T Consensus        76 -------i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          76 -------ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             -------CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence                   55455566789999999999999999999999999999888899999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.89  E-value=1.4e-22  Score=150.66  Aligned_cols=119  Identities=28%  Similarity=0.429  Sum_probs=107.9

Q ss_pred             CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      ++++++.|++..+.|.|+|++|+||...+..+.+||||++.+.|+..   .+++|++++.+.+|.|||+|.|+       
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-------   74 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-------   74 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-------
Confidence            46899999999999999999999999988888999999999998773   47899999999999999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEc
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWREL  159 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L  159 (207)
                            ++.+++....|.|.||+++..+++++||++.++|.++... ....+||.|
T Consensus        75 ------v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          75 ------ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             ------CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence                  6778888899999999999999999999999999999655 457789976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.89  E-value=2.9e-22  Score=149.84  Aligned_cols=122  Identities=31%  Similarity=0.460  Sum_probs=107.8

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      +|++++++.|++..+.|.|+|.+|+||+..+.. |.+||||++.+.|...  .+++|++++++.+|.|||+|.|.     
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-----   75 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-----   75 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-----
Confidence            478999999999999999999999999998865 8999999999987653  47799999999999999999999     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc---cccceEEEcc
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA---QTIEEWRELQ  160 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~---~~~~~w~~L~  160 (207)
                              ++..++....|.+.||+.+.++++++||++.++|.++...   .....||+|.
T Consensus        76 --------v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          76 --------VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             --------cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence                    5556667789999999999999999999999999998654   3566899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.89  E-value=4.4e-22  Score=147.73  Aligned_cols=122  Identities=43%  Similarity=0.767  Sum_probs=110.8

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      .|..++++.|++..+.|.|+|++|++|+..+..+.+|||+++.+.+.+...++|++++++.+|.|+|+|.|.        
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~--------   73 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE--------   73 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe--------
Confidence            478899999999999999999999999999888999999999998766678999999999999999999998        


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                           ++..++....|.|+|||++.++++++||++.++|.++..+.....|++|+
T Consensus        74 -----v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          74 -----VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             -----CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence                 45444556789999999999999999999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.89  E-value=3.8e-22  Score=148.05  Aligned_cols=118  Identities=39%  Similarity=0.676  Sum_probs=106.2

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |++++++.|+  .+.|.|.|++|++|+..+ .+.+||||++.+.|+.  ..+++|++++++.+|.|||+|.|++      
T Consensus         2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~------   72 (122)
T cd08381           2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDG------   72 (122)
T ss_pred             CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEec------
Confidence            6788999999  899999999999999998 8899999999998754  3478999999999999999999984      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                            .+..++....|.|+|||++.++++++||++.++|.++..++....||.|
T Consensus        73 ------~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          73 ------LPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             ------CChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence                  3656667789999999999999999999999999999888778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.89  E-value=1e-22  Score=154.00  Aligned_cols=131  Identities=23%  Similarity=0.275  Sum_probs=116.4

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFL  101 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~--~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~  101 (207)
                      +|++.++|.|.+..++|.|.|++|+||...+.  .+.+||||++.+.+++.  .+++|++++.+.+|.|||+|.|.    
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~----   76 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE----   76 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE----
Confidence            47899999999999999999999999998873  34589999999987654  37799999999999999999999    


Q ss_pred             cccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                               ++.+++....|.|+|||++.++++++||++.+++..  .+....+|.++...+......||
T Consensus        77 ---------v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va~WH  135 (138)
T cd08407          77 ---------LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIAMWH  135 (138)
T ss_pred             ---------CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchhEEE
Confidence                     677777888999999999999999999999999975  56778899999988888888886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.89  E-value=6.5e-22  Score=147.96  Aligned_cols=125  Identities=44%  Similarity=0.693  Sum_probs=109.6

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      ++|..++++.|+...+.|+|+|++|+||+..+.. +.+||||++.+.+...++.+|++++++.+|.|||+|.|..     
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~-----   75 (128)
T cd08388           1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYG-----   75 (128)
T ss_pred             CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcc-----
Confidence            3588999999999999999999999999998875 8899999999987767788999999999999999999942     


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc--cccceEEEccc
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS  161 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~--~~~~~w~~L~~  161 (207)
                             ++..++....|.+.||+++.++++++||++.++|.++...  .....|.+|++
T Consensus        76 -------~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          76 -------IPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             -------cCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence                   4444555678999999999999999999999999998655  67889999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.89  E-value=7.2e-22  Score=146.50  Aligned_cols=122  Identities=71%  Similarity=1.165  Sum_probs=110.0

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      .|+.++++.|+...+.|.|+|++|+||+..+..+.+||||++.+.+...+.++|++++++.+|.|+|+|.|.        
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~--------   73 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK--------   73 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe--------
Confidence            478899999999999999999999999998888899999999998766678899999999999999999999        


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                           ++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.
T Consensus        74 -----i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          74 -----VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             -----CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence                 44344456789999999999889999999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.88  E-value=5.1e-22  Score=147.72  Aligned_cols=123  Identities=41%  Similarity=0.602  Sum_probs=112.1

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      .|+.++++.|++...+|.|+|++|+||+..+..+.+||||++.+.|...++++|++++. .+|.|||+|.|+.       
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~-------   73 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSR-------   73 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECC-------
Confidence            47889999999999999999999999999988889999999998887778899999888 9999999999984       


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                           ++..++....|.+.||+++.+++++++|++.++|.++..+.....|++|++
T Consensus        74 -----i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          74 -----VEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             -----CCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence                 555667788999999999999999999999999999988888899999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.88  E-value=2.2e-22  Score=151.95  Aligned_cols=130  Identities=28%  Similarity=0.395  Sum_probs=116.3

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |++.+++.|.+...+|.|+|++|+||+..+..+.+||||++.+.|++.+  +.+|++++++.+|.|||+|.|.       
T Consensus         2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-------   74 (136)
T cd08406           2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-------   74 (136)
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-------
Confidence            6789999999999999999999999999988899999999999876543  6789999999999999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                            ++..++....|.|+||+++.++++++||++.++...  .+...++|.++.+.++.....||
T Consensus        75 ------v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~v~~WH  133 (136)
T cd08406          75 ------VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKPVAMWH  133 (136)
T ss_pred             ------CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCeeeEee
Confidence                  666677889999999999999999999999998664  56778899999988888888886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.88  E-value=1.7e-21  Score=144.97  Aligned_cols=123  Identities=35%  Similarity=0.641  Sum_probs=109.5

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      |.|+.++++.|++..+.|+|+|++|+||+..+..+.+||||++.+.+.+  ...++|++++++.+|.|+|+|.|.     
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-----   75 (127)
T cd04030           1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-----   75 (127)
T ss_pred             CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-----
Confidence            6789999999999999999999999999999888999999999997654  457899999999999999999998     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCC--CCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~--~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                              ++..++....+.+.||+.+.+  +++++||++.++|.++..+....+||.|+
T Consensus        76 --------i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          76 --------VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             --------cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence                    454555667999999999875  67899999999999998888889999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=2.5e-21  Score=147.56  Aligned_cols=129  Identities=32%  Similarity=0.469  Sum_probs=110.4

Q ss_pred             cccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEE
Q psy17645         19 VLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFV   95 (207)
Q Consensus        19 ~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~   95 (207)
                      ...+....|+.++++.|  ..+.|.|.|++|+||...+ ..|.+||||++.+.+++.  .+.+|++++++.+|.|||+|.
T Consensus        10 ~~~~~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~   87 (146)
T cd04028          10 QVLASPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLV   87 (146)
T ss_pred             ccccCCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEE
Confidence            34445567999999999  4789999999999999864 468899999999987654  488999999999999999999


Q ss_pred             EeeecccccceeccCcccCcCCCceEEEEEE-ecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645         96 FKVSFLNRSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus        96 f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~-d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      |.+             +   +....|.++|| +++.+.++++||++.++|+++..+.....||.|.+....
T Consensus        88 f~v-------------~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~  142 (146)
T cd04028          88 FDV-------------S---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL  142 (146)
T ss_pred             EEE-------------c---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence            995             3   36689999999 578888899999999999999888888899999975544

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.88  E-value=1.6e-21  Score=144.79  Aligned_cols=124  Identities=45%  Similarity=0.864  Sum_probs=110.9

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      .|++++++.|++..+.|.|+|++|+||+..+..+.+|||+++.+.+.+.+..+|++++++.+|.|+|+|.|..       
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~-------   74 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG-------   74 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcc-------
Confidence            4789999999999999999999999999988888999999999977666788999999999999999999974       


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                           .+.+.+....|.++|||++..+++++||++.+++.++..+.....|++|.+
T Consensus        75 -----~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          75 -----FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             -----cCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence                 444445567899999999998899999999999999988888899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.87  E-value=6.7e-22  Score=149.74  Aligned_cols=132  Identities=28%  Similarity=0.457  Sum_probs=115.7

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ++++++++.|++..++|.|+|++|+||...+..+.+||||++.+.|...   .+++|++++++.+|.|||+|.|+     
T Consensus         1 ~~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-----   75 (138)
T cd08408           1 VPELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-----   75 (138)
T ss_pred             CCeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-----
Confidence            3678999999999999999999999999998889999999999987543   26799999999999999999999     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                              ++.+++....|.|.||+.+.++++++||++.+++.... .....+|+.+...++.....||
T Consensus        76 --------i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~v~~WH  135 (138)
T cd08408          76 --------VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQVCRWH  135 (138)
T ss_pred             --------CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCEEeEee
Confidence                    56667778899999999999999999999999987542 2346799999998888888886

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.87  E-value=5e-21  Score=141.52  Aligned_cols=120  Identities=38%  Similarity=0.636  Sum_probs=106.4

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      |++++++.|+...+.|.|+|++|+||+..+ ..+.+||||++.+.+...  .+.+|++++++.+|.|+|+|.|.      
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~------   74 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH------   74 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe------
Confidence            578899999999999999999999999888 678999999999876543  47899999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                             ++..++....|.|+|||.+.++++++||++.++|.++..+....+||+|
T Consensus        75 -------i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          75 -------ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             -------CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence                   4544455678999999999988999999999999999878888999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.86  E-value=1.9e-21  Score=147.05  Aligned_cols=132  Identities=27%  Similarity=0.360  Sum_probs=117.3

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |++++++.|++..++|.|+|++|+||...+ .+.+||||++.+.+...  .+++|++++++.+|.|||.|.|.       
T Consensus         2 G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-------   73 (137)
T cd08409           2 GDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-------   73 (137)
T ss_pred             cEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-------
Confidence            778999999999999999999999999888 78899999999986543  36799999999999999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEee
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYL  172 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l  172 (207)
                            ++.+++....|.|+||+.+..+++++||++.++......+...++|.++...+++...+||.
T Consensus        74 ------i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~  135 (137)
T cd08409          74 ------VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHA  135 (137)
T ss_pred             ------CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEe
Confidence                  56666777899999999998899999999999977666778889999999988888888874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.86  E-value=1.3e-20  Score=139.31  Aligned_cols=122  Identities=39%  Similarity=0.699  Sum_probs=108.1

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      |+..+++.|+...+.|.|+|++|+||+..+ ..+.+||||++.+.+++....+|++++++.+|.|+|.|.|.        
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~--------   72 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ--------   72 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE--------
Confidence            567899999999999999999999999987 67889999999997766667899999999999999999998        


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                           ++...+....|.|.|||.+..+++++||++.++|.++........|++|.+
T Consensus        73 -----i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          73 -----VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             -----cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence                 444444456899999999988889999999999999988888889999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.85  E-value=6.6e-21  Score=143.74  Aligned_cols=132  Identities=33%  Similarity=0.509  Sum_probs=115.4

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      +|++.+++.|++..+.|.|+|++|+||+..+..|.+||||++.+.+.+.  ...+|++++++.+|.|+|+|.|.      
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~------   74 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD------   74 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE------
Confidence            4788999999999999999999999999998889999999999975443  36789999999999999999999      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEee
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYL  172 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l  172 (207)
                             ++........+.|+|||++.++++++||++.+++..  .+....+|++|.+.+++....||.
T Consensus        75 -------v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i~~Wh~  134 (136)
T cd08404          75 -------IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQIAEWHM  134 (136)
T ss_pred             -------CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCeeeEEEe
Confidence                   554455567899999999999999999999999988  456788999999888888888863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.85  E-value=8.3e-21  Score=142.36  Aligned_cols=129  Identities=13%  Similarity=0.241  Sum_probs=110.0

Q ss_pred             CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCC-CCeEecEEEEeeeccccc
Q psy17645         28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTL-NPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~-~P~w~e~~~f~~~~~~~~  104 (207)
                      +..++++|.+..++|+|.|++|+||+.....+..||||++.+.+.++  .+++|++++++. +|.|||+|.|+       
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-------   74 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-------   74 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-------
Confidence            46899999999999999999999999876677789999999976554  378999999985 69999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                            ++.++ ....+.+++||++..+++++||++.++..+. .+.+.++|.++...+.+....||
T Consensus        75 ------v~~~~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ia~WH  133 (135)
T cd08692          75 ------VTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVVTKWH  133 (135)
T ss_pred             ------CCchh-heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCeeeEee
Confidence                  55444 4578999999999999999999999998763 44567899999888888888886

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=1.1e-20  Score=141.84  Aligned_cols=128  Identities=31%  Similarity=0.521  Sum_probs=111.7

Q ss_pred             ceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645         29 PEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEV  106 (207)
Q Consensus        29 ~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~  106 (207)
                      +++++.|+...+.|.|+|++|++|+..+..+.+||||++.+.+++.  ...+|++++++.+|.|||+|.|.         
T Consensus         2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~---------   72 (133)
T cd08384           2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD---------   72 (133)
T ss_pred             EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE---------
Confidence            5789999999999999999999999998889999999999976432  47899999999999999999998         


Q ss_pred             eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                          ++..++....|.|+|||++..+++++||++.+++..  .+....+|+++.+.+++....||
T Consensus        73 ----~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~~wh  131 (133)
T cd08384          73 ----IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIEAWH  131 (133)
T ss_pred             ----CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChheee
Confidence                444445567899999999988889999999999985  45567899999988888888875

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.85  E-value=3.4e-20  Score=137.46  Aligned_cols=121  Identities=42%  Similarity=0.625  Sum_probs=104.0

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |+.++++.|++..+.|.|+|++|++|...+..+.+||||++.+.+..  ...++|++++++.+|.|+|+|.|.+      
T Consensus         3 G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~------   76 (125)
T cd04031           3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSN------   76 (125)
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcc------
Confidence            77899999999999999999999999999888899999999996543  2577999999999999999999984      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                            .+..++....|.|+|||++..+++++||++.++|.+. ......+||+|+
T Consensus        77 ------~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~  125 (125)
T cd04031          77 ------VRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ  125 (125)
T ss_pred             ------cCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence                  3434445679999999999988899999999999983 334557899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.84  E-value=1.5e-20  Score=141.79  Aligned_cols=131  Identities=34%  Similarity=0.597  Sum_probs=113.6

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      +|+..+++.|.+..+.|.|+|++|+||...+..+.+||||++.+.+.+.  ...+|++++++.+|.|||.|.|.      
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~------   74 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN------   74 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe------
Confidence            3778999999999999999999999999988889999999999865432  46789999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                             ++.+.+....|.|+|||++.++++++||++.+++.+.  +....+|+++...++....+||
T Consensus        75 -------i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~~wh  133 (136)
T cd08405          75 -------IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVAQWH  133 (136)
T ss_pred             -------CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchhEEE
Confidence                   4444445578999999999999999999999999875  5667899999998888888886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=4.9e-20  Score=137.20  Aligned_cols=120  Identities=29%  Similarity=0.496  Sum_probs=98.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc---CcCCC
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY---ADAMN  118 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~---~~~~~  118 (207)
                      ++|+|++|+||+..+..|.+||||++.+   +..+++|++++.+.+|.|||.|.|.+             +.   ++...
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~~~~kT~v~~~t~nP~Wne~f~F~v-------------~~~~~~~~~~   64 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFEL-------------PGLLSGNGNR   64 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEE---CCeeeeeeeecCCCCCEeCceEEEEe-------------cCcccCCCcC
Confidence            5799999999999988899999999998   35678999999999999999999984             32   22356


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeec--cccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQID--LAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK  183 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~--~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~  183 (207)
                      ..|.+.|||++.++++++||++.++|.++.  .+....+|++|.+..+..      ....|+|.+.+
T Consensus        65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~------~~~~Gei~l~~  125 (126)
T cd08682          65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKD------DKERGEIEVDI  125 (126)
T ss_pred             CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCC------ccccceEEEEe
Confidence            789999999999888999999999999986  456678999998644321      22358888743

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.84  E-value=2.8e-20  Score=140.28  Aligned_cols=130  Identities=32%  Similarity=0.584  Sum_probs=113.0

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |+..+++.|.+..+.|.|.|++|++|+..+..+.+||||++.+.+.+.  ..++|++++++.+|.|+|.|.|.       
T Consensus         2 G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-------   74 (136)
T cd08402           2 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-------   74 (136)
T ss_pred             cEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-------
Confidence            778999999999999999999999999998889999999999865333  46789999999999999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                            ++..++....|.|+|||++.++++++||++.+++..  .+....+|+++...+......||
T Consensus        75 ------i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~~~wh  133 (136)
T cd08402          75 ------VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPIAQWH  133 (136)
T ss_pred             ------CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCeeeEEE
Confidence                  444445556899999999999999999999999976  45677899999988888788775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.84  E-value=2.8e-20  Score=139.93  Aligned_cols=130  Identities=35%  Similarity=0.523  Sum_probs=112.2

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |+..+++.|.+..+.|+|+|++|++|+..+..+.+||||++.+.+.+.  ...+|++++++.+|.|+|+|.|.       
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-------   73 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-------   73 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-------
Confidence            567899999999999999999999999998889999999999865443  46789999999999999999998       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                            ++...+....|.|+|||++.++++++||++.+++.  ..+....+|+++...++.....||
T Consensus        74 ------i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~~~wh  132 (134)
T cd08403          74 ------VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPIAQWH  132 (134)
T ss_pred             ------CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCeeeEee
Confidence                  44444555679999999999999999999999987  345667899999988888888775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.84  E-value=6.7e-20  Score=135.42  Aligned_cols=115  Identities=28%  Similarity=0.431  Sum_probs=95.9

Q ss_pred             CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      +.++++.|  ..+.|.|+|++|+||...+ .+.+||||++.+.|+..  .+++|++++++.+|.|||+|.|.        
T Consensus         2 ~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~--------   70 (119)
T cd08685           2 QLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD--------   70 (119)
T ss_pred             EEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE--------
Confidence            34445554  7899999999999999887 78999999999987654  36799999999999999999998        


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCC-CCceeEEEEEeceeeccccccceEEEc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFS-KHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~-~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                           ++..+. ...+.|+||+.+... ++++||++.++|.++..+....+||.|
T Consensus        71 -----v~~~~~-~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          71 -----VNERDY-QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             -----cChHHh-CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence                 443333 346889999998765 468999999999999877788999976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.83  E-value=6.1e-20  Score=137.45  Aligned_cols=130  Identities=36%  Similarity=0.506  Sum_probs=113.4

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |++++++.|++..++|.|.|++|+||+..+..+.+||||++.+.+...  ..++|+++.++.+|.|+|+|.|.       
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-------   73 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-------   73 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-------
Confidence            578899999999999999999999999988788999999999976543  36799999999999999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                            ++...+....|.|+|||.+..+++++||++.+++.+  .+...++|++|.+.+++....||
T Consensus        74 ------i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~~wh  132 (134)
T cd00276          74 ------VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIARWH  132 (134)
T ss_pred             ------CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceEEee
Confidence                  444444467899999999988889999999999999  66788999999998888777775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.83  E-value=5.7e-20  Score=138.63  Aligned_cols=131  Identities=30%  Similarity=0.472  Sum_probs=110.9

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |++.+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+...  ..++|++++++.+|.|||+|.|.       
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-------   73 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-------   73 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-------
Confidence            578899999999999999999999999998889999999999865332  46799999999999999999999       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                            ++.+++....+.|+|||++..+++++||++.++..... +....+|+.|.+.++.....||
T Consensus        74 ------i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~~~wh  133 (135)
T cd08410          74 ------VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAVEQWH  133 (135)
T ss_pred             ------CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEeeEee
Confidence                  55555556689999999999899999999987754332 2346899999998888888886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.82  E-value=2e-19  Score=139.74  Aligned_cols=123  Identities=37%  Similarity=0.563  Sum_probs=104.7

Q ss_pred             CCCceeEEEEEC------------cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEe
Q psy17645         26 IFKPEQTLEYDF------------NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFN   91 (207)
Q Consensus        26 ~~~~~~~l~y~~------------~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~   91 (207)
                      +|++.+++.|.+            ..+.|.|+|++|+||+..+..+.+||||++.+.+..  ...++|++++++.+|.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            378899999999            448999999999999999888999999999987643  357899999999999999


Q ss_pred             cEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645         92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus        92 e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                      |.|.|.+            .+..++....|.|.|||++.++++++||++.+++.++........|+++.
T Consensus        81 E~f~f~~------------~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020          81 HTFVYDG------------VSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             CEEEEec------------CCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            9999984            44444556789999999999988999999999999987666666777665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=2.3e-19  Score=132.63  Aligned_cols=112  Identities=29%  Similarity=0.380  Sum_probs=94.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEE----CCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLL----PDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~----~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      +|+|+|++|++|+..+ .|.+||||++.+.    +...++++|+++.++.+|.|||+|.|.+            .....+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v------------~~~~~~   67 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFIL------------GNEDDP   67 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEe------------eCcCCC
Confidence            4899999999999877 5899999999984    2334567999999999999999999995            222244


Q ss_pred             CCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      ....|.|.|||++..+++++||++.++|.++..++....|++|.+...+
T Consensus        68 ~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~  116 (120)
T cd08395          68 ESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM  116 (120)
T ss_pred             ceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence            5678999999999888899999999999999988888899999865443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.82  E-value=2.9e-19  Score=136.74  Aligned_cols=140  Identities=32%  Similarity=0.431  Sum_probs=105.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      +|.|+|++|+||..  ..|.+||||++.+.+..  ...++|++++++.+|.|||+|.|.+......+..+..++..++..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999998  47899999999997532  257899999999999999999999632222221111234445455


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEccccCCCC---ceEEeecCCCCceeee
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSVEGEG---GQVYYLDGPKGNLATG  182 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L~~~~~~~---~~~~~l~~~~g~i~~~  182 (207)
                      ..|.|.||+++.+++++|||++.++|..+..+ .....||+|.+.....   +....-.+.-|++++.
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLK  146 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEe
Confidence            78999999999888899999999999999876 5678999998765443   3334445566777764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.82  E-value=7.7e-19  Score=130.02  Aligned_cols=115  Identities=23%  Similarity=0.396  Sum_probs=95.6

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecC-CCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      +.|+|+|++|++++..+ .|.+||||++.+   +.++++|+++.+ +.+|.|||+|.|.+             +.   ..
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~~~~kT~v~~~~~~nP~WNe~F~f~v-------------~~---~~   61 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GHAVYETPTAYNGAKNPRWNKTIQCTL-------------PE---GV   61 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CCEEEEeEEccCCCCCCccCeEEEEEe-------------cC---CC
Confidence            68999999999988776 689999999999   457789999875 89999999999995             21   23


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEece-eeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALC-QIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG  182 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~-~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~  182 (207)
                      ..|.|+|||++.+++|++||.+.+++. .+..++..+.|++|.+..+.        ...|+|.+.
T Consensus        62 ~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--------~~~g~i~l~  118 (121)
T cd04016          62 DSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--------DKEGMINLV  118 (121)
T ss_pred             cEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--------CCceEEEEE
Confidence            579999999999999999999999996 57777888999999864432        244788773

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG1028|consensus

Probab=99.81  E-value=5.1e-19  Score=156.01  Aligned_cols=149  Identities=54%  Similarity=0.884  Sum_probs=129.5

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ....|..++++.|+.+...|.|+|++|++|+..+..|.+||||++++.|+...+.+|++++++++|.|+|+|.|.     
T Consensus       150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-----  224 (421)
T KOG1028|consen  150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-----  224 (421)
T ss_pred             ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-----
Confidence            344588999999999999999999999999999977889999999999999899999999999999999999999     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG  182 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~  182 (207)
                              ++..++....|.+.|||++++++++++|++.++|..+........|.+|..........-      ||+.+ 
T Consensus       225 --------v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~------gel~~-  289 (421)
T KOG1028|consen  225 --------VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELA------GELLL-  289 (421)
T ss_pred             --------cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccccc------ceEEE-
Confidence                    677778899999999999999999999999999998877777788999997544422222      78888 


Q ss_pred             ceeeeeccee
Q psy17645        183 KKALYLPNVG  192 (207)
Q Consensus       183 ~~~~~~~~~~  192 (207)
                       .+.|+|..+
T Consensus       290 -sL~Y~p~~g  298 (421)
T KOG1028|consen  290 -SLCYLPTAG  298 (421)
T ss_pred             -EEEeecCCC
Confidence             555888743

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=1.1e-18  Score=129.98  Aligned_cols=120  Identities=25%  Similarity=0.334  Sum_probs=97.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      +|+|+|++|++|...+..+.+||||++.+.   .+.++|+++.++.+|.|||.|.|.+            ..........
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~------------~~~~~~~~~~   65 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNV------------SDPSRLSNLV   65 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEc------------cCHHHccCCe
Confidence            489999999999998888999999999983   4678999999999999999999984            2222333568


Q ss_pred             EEEEEEecCCCC-CCceeEEEEEeceeec-cccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645        121 LVFAIFDFDRFS-KHDQIGEVKVALCQID-LAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG  182 (207)
Q Consensus       121 l~i~v~d~~~~~-~~~~lG~~~v~L~~l~-~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~  182 (207)
                      |.|.|||.+.+. .+++||++.+++.++. .+....+||+|.+....       +...|+|.+.
T Consensus        66 l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~-------~~~~G~l~l~  122 (127)
T cd04022          66 LEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLF-------SRVRGEIGLK  122 (127)
T ss_pred             EEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCC-------CCccEEEEEE
Confidence            999999998876 7899999999999986 45667899999864321       1245888883

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.8e-18  Score=128.82  Aligned_cols=103  Identities=25%  Similarity=0.352  Sum_probs=90.5

Q ss_pred             EEEEEEEeeC---CCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         42 LSVTVIQAED---LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        42 L~V~I~~a~n---L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      |.|+|++|++   |...+..|.+||||.+.+   +.++.+|++++++.+|.|||+|.|.+             .  + ..
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~~~~rTk~~~~~~nP~WnE~f~f~v-------------~--~-~~   62 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GPKWVRTRTVEDSSNPRWNEQYTWPV-------------Y--D-PC   62 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEE---CCEEeEcCcccCCCCCcceeEEEEEe-------------c--C-CC
Confidence            7899999999   888888899999999998   55788999999999999999999985             1  1 23


Q ss_pred             ceEEEEEEecCCCC------CCceeEEEEEeceeeccccccceEEEccccC
Q psy17645        119 KTLVFAIFDFDRFS------KHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus       119 ~~l~i~v~d~~~~~------~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                      ..|.|+|||++...      .+++||++.++|..+..+....+|++|.+..
T Consensus        63 ~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~  113 (126)
T cd08379          63 TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN  113 (126)
T ss_pred             CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC
Confidence            58999999998863      8899999999999998888889999998654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=3.6e-18  Score=126.16  Aligned_cols=118  Identities=31%  Similarity=0.503  Sum_probs=99.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      +|+|+|.+|++|+..+..+.+|||+++.+  .+...++|+++.++.+|.|+|.|.|.+             .  . ....
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~--~~~~~~kT~~~~~t~nP~Wne~f~f~v-------------~--~-~~~~   62 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKFTLPI-------------E--D-VTQP   62 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEE--CCEEEEEeeeccCCCCCccceeEEEEe-------------c--C-CCCe
Confidence            48999999999999988899999999998  344678999999999999999999985             2  2 2468


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK  184 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~  184 (207)
                      +.|+|||++..+++++||++.+++.++..+...+.|++|.+..+.        ...|+|.+.++
T Consensus        63 l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--------~~~G~l~l~~~  118 (121)
T cd04042          63 LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--------EDLGYISLVVT  118 (121)
T ss_pred             EEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--------cCceEEEEEEE
Confidence            999999999988999999999999999888889999999764431        23478887433

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.78  E-value=6.2e-18  Score=125.20  Aligned_cols=122  Identities=30%  Similarity=0.480  Sum_probs=97.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      +|+|+|++|++|...+..+.+|||+++.+   +....+|+++.++.+|.|+|.|.|.+             ..  .....
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~~--~~~~~   62 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFEL-------------ME--GADSP   62 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CCEEEeceeecCCCCCccCcEEEEEc-------------CC--CCCCE
Confidence            48999999999999888889999999998   34678999999999999999999984             21  12468


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK  183 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~  183 (207)
                      |.|+|||++..+.+++||++.++|.++..+.....|+.|.+......   ......|.|.+.|
T Consensus        63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~---~~~~~~G~l~~~~  122 (123)
T cd04025          63 LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEE---ESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCc---cccCceEEEEEEe
Confidence            99999999998889999999999999877777789999986433211   1112336776644

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.78  E-value=6e-18  Score=124.61  Aligned_cols=105  Identities=28%  Similarity=0.469  Sum_probs=91.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|+|++|++|+..+..+.+||||++.+.+.....++|+++.++.+|.|||+|.|.+             ...  ....|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i-------------~~~--~~~~l   66 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRI-------------QSQ--VKNVL   66 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEe-------------Ccc--cCCEE
Confidence            789999999999988788999999999854445678999999999999999999984             222  34579


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                      .|+|||++.. .+++||++.+++.++..+.....|++|.+.
T Consensus        67 ~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~  106 (119)
T cd04036          67 ELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ  106 (119)
T ss_pred             EEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence            9999999988 889999999999999888889999999753

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=1e-17  Score=128.52  Aligned_cols=133  Identities=21%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecC-CCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      |+|+|++|++|+..+..|.+||||++.+.   .+..+|++... +.+|.|||.|.|.+             +  +.....
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v-------------~--~~~~~~   63 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVA-------------A--EPFEDH   63 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEe-------------c--CccCCe
Confidence            78999999999999988999999999993   47889998876 69999999999984             2  223468


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccc----cccceEEEccccCCCCceEEeecCCCCceeeeceeeeecceeeee
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLA----QTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKN  195 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~----~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~~~~~  195 (207)
                      +.|.||+++..+++++||++.++|.++..+    ....+||+|.+..+... .-.-....|+|.+  ++.+.+.+.+..
T Consensus        64 l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l--~i~~~~~~~~~~  139 (150)
T cd04019          64 LILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHL--RLCLDGGYHVLD  139 (150)
T ss_pred             EEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEE--EEEecCcceEee
Confidence            999999999888899999999999998643    44689999987643100 0011134688888  555666666543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.77  E-value=1.1e-17  Score=123.80  Aligned_cols=119  Identities=39%  Similarity=0.508  Sum_probs=100.3

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |+.++++.|++..+.|+|+|++|++|+..+..+.+|||+++.+.+..  ....+|++++++.+|.|+|.|.|..      
T Consensus         2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~------   75 (123)
T cd04035           2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG------   75 (123)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcC------
Confidence            67899999999999999999999999988878899999999986543  3478999999999999999999963      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEE
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE  158 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~  158 (207)
                            ++..++....+.|++||++.. .+++||++.++|+++..+.....|+.
T Consensus        76 ------~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          76 ------ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             ------CCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence                  333344457899999999987 78999999999999876655555544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=1.4e-17  Score=122.02  Aligned_cols=104  Identities=32%  Similarity=0.493  Sum_probs=91.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      .++|+|++|++|+..+..+.+|||+++.+   +....+|+++.++.+|.|+|.|.|.+             .  +.....
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~--~~~~~~   62 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLHL-------------F--DDQSQI   62 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEE---CCEeEecccccCCCCCceeEEEEEEe-------------c--CCCCCE
Confidence            37899999999999988899999999998   45678999999999999999999985             2  113578


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                      +.++|||++..+++++||++.++|.++..+.....|++|.+.
T Consensus        63 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~  104 (116)
T cd08376          63 LEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG  104 (116)
T ss_pred             EEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence            999999999988999999999999999888888999999854

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.76  E-value=9.8e-18  Score=123.13  Aligned_cols=115  Identities=24%  Similarity=0.330  Sum_probs=93.7

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      +.|+|+|++|++|+..+..+.+|||+++.+.   ....+|+++. .+.+|.|+|.|.|.+             +..  ..
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v-------------~~~--~~   62 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI-------------TED--KK   62 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEe-------------cCC--CC
Confidence            5799999999999999888999999999983   3677888865 578999999999984             321  34


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK  183 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~  183 (207)
                      ..|.|+|||++..+ +++||++.+++.++..+....+|++|.....          ..|+|.+.+
T Consensus        63 ~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~----------~~G~i~l~l  116 (118)
T cd08681          63 PILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKGR----------YAGEVYLEL  116 (118)
T ss_pred             CEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccCCc----------EeeEEEEEE
Confidence            68999999998866 8999999999999877777889999985331          247777743

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.76  E-value=3.3e-17  Score=122.08  Aligned_cols=122  Identities=31%  Similarity=0.482  Sum_probs=96.1

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      ..|+|+|++|++|+..   +.+||||++.+  .+.+..+|++. .+.+|.|||.|.|..            .+ .  ...
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l--~~~~~~kT~v~-~~~nP~WnE~f~f~~------------~~-~--~~~   62 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISL--NEVKVARTKVR-EGPNPVWSEEFVFDD------------LP-P--DVN   62 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEE--CCEeEEEeecC-CCCCCccCCEEEEec------------CC-C--CcC
Confidence            4699999999999874   47899999999  34455788875 579999999999984            22 1  224


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN  190 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~  190 (207)
                      .+.|.+||.+..+++++||++.++|.++..+...+.|++|.+.....      ....|+|++  ++.|.++
T Consensus        63 ~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~------~~~~G~i~l--~l~~~~~  125 (126)
T cd08400          63 SFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLK------GGEWGSLRI--RARYSHE  125 (126)
T ss_pred             EEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCC------CCcCcEEEE--EEEEEcc
Confidence            78899999999999999999999999998888889999998754311      134589999  4546553

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.75  E-value=3.9e-17  Score=120.91  Aligned_cols=116  Identities=28%  Similarity=0.484  Sum_probs=94.9

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         42 LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        42 L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      |.|+|++|+||+..+ ..|.+||||.+.+  .+....+|++++++.+|.|+|.|.|.+             +.   ....
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l--~~~~~~kT~v~~kt~~P~WnE~F~f~v-------------~~---~~~~   63 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFEI-------------PR---TFRH   63 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEE--CCccEEEeeEEECCCCCccCCeEEEEc-------------CC---CCCE
Confidence            679999999999864 4578999999998  344568999999999999999999994             32   2368


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG  182 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~  182 (207)
                      +.|.|||++.+++++++|.+.++++++..+...+.|++|.+......       ..|+|.+.
T Consensus        64 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-------~~G~i~l~  118 (121)
T cd08401          64 LSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-------VQGKVHLE  118 (121)
T ss_pred             EEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-------ccEEEEEE
Confidence            99999999999999999999999999987788889999987533211       24777663

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=4.2e-17  Score=121.16  Aligned_cols=120  Identities=31%  Similarity=0.462  Sum_probs=97.1

Q ss_pred             CEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         40 NSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      +.|+|+|++|++|+..+.  .+.+|||+.+.+   +.+.++|++++++.+|.|+|.|.|.+             .  ...
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~~P~Wne~f~~~~-------------~--~~~   62 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFPI-------------F--SAQ   62 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CCEEEecceecCCcCCccCCcEEEEe-------------c--CCC
Confidence            578999999999999887  789999999987   45678999999999999999999985             2  224


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeecc---ccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL---AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG  182 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~---~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~  182 (207)
                      ...|.|+|||++..+.+++||++.+++.++..   .....+|+.|.+....     .-....|+|.+.
T Consensus        63 ~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-----~~~~~~G~i~l~  125 (128)
T cd04024          63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-----KTSVVSGEIHLQ  125 (128)
T ss_pred             CCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC-----ccccccceEEEE
Confidence            57999999999988889999999999999863   2345799999875332     112345788773

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=3.2e-17  Score=123.19  Aligned_cols=113  Identities=35%  Similarity=0.513  Sum_probs=96.7

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      +.|...+++.|+...+.|+|+|++|++|+..+..+.+||||++.+.+..    ...++|++++++.+|.|+|+|.|.+  
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i--   78 (133)
T cd04009           1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNV--   78 (133)
T ss_pred             CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEe--
Confidence            3578899999999999999999999999998888899999999987543    3578999999999999999999995  


Q ss_pred             ccccceeccCccc-CcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645        101 LNRSEVFEQGVPY-ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  149 (207)
Q Consensus       101 ~~~~~~~~~~~~~-~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~  149 (207)
                                ... .......|.|+|||++.++++++||++.++|.++..
T Consensus        79 ----------~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          79 ----------PPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             ----------chhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence                      111 112456899999999999889999999999998853

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.75  E-value=5.1e-17  Score=120.93  Aligned_cols=122  Identities=25%  Similarity=0.432  Sum_probs=98.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|+|++|+||+.  ..+.+|||+.+.+. ...+.++|+++.++.+|.|+|.|.|.+             ..   ....+
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~~---~~~~l   61 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFEL-------------SP---NSKEL   61 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEEe-------------CC---CCCEE
Confidence            5789999999987  57899999999983 224578999999999999999999984             21   34689


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN  190 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~  190 (207)
                      .|+|||++..+++++||++.+++.++..+....+|++|.+.....      ....|+|.+  .+.|.+.
T Consensus        62 ~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~------~~~~G~l~l--~~~~~~~  122 (126)
T cd08678          62 LFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEG------DSVSGSITV--EFLFMEP  122 (126)
T ss_pred             EEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCC------CCcceEEEE--EEEEecc
Confidence            999999999888999999999999998877788999998654321      234688888  4445443

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=4.8e-17  Score=122.85  Aligned_cols=118  Identities=29%  Similarity=0.457  Sum_probs=95.3

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..+.|+|+|++|++|+..+..+.+||||++.+   +.+.++|+++.++.+|.|||.|.|.+             .  +..
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~~~~kT~vi~~t~nP~Wne~f~f~v-------------~--~~~   74 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GSQEHKTKVVSDTLNPKWNSSMQFFV-------------K--DLE   74 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CCEeeeccccCCCCCCccCceEEEEe-------------c--Ccc
Confidence            46789999999999999988899999999998   45689999999999999999999985             2  334


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeecc-----ccccceEEEccccCCCCceEEeecCCCCceeeecee
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKA  185 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~-----~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~  185 (207)
                      ...+.|+|||.+.++.+++||++.+++.++..     ......|..|.            ....|+|.+.+.+
T Consensus        75 ~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~------------~~~~g~i~l~~~~  135 (136)
T cd08375          75 QDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH------------EVPTGEVVVKLDL  135 (136)
T ss_pred             CCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc------------cccceeEEEEEEe
Confidence            56899999999998889999999999998865     22333555552            1234888886553

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.74  E-value=6e-17  Score=121.18  Aligned_cols=120  Identities=35%  Similarity=0.581  Sum_probs=100.4

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |.+.+++.|+.  +.|+|+|++|+||+..+..+.+|||+++.+.+..  ...++|++++++.+|.|+|+|.|.+      
T Consensus         2 g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~------   73 (131)
T cd04026           2 GRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL------   73 (131)
T ss_pred             cEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeC------
Confidence            66777887765  9999999999999998878899999999986432  3578999999999999999999984      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                             ...+ ....|.|.|||++....+++||++.++|.++... ....||+|.+..
T Consensus        74 -------~~~~-~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~  123 (131)
T cd04026          74 -------KPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE  123 (131)
T ss_pred             -------Cchh-cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence                   3222 3468999999999888899999999999998644 778999997643

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.74  E-value=2.4e-17  Score=119.95  Aligned_cols=104  Identities=33%  Similarity=0.570  Sum_probs=88.9

Q ss_pred             EEEEEEEeeCCCCCCC-CCCCCcEEEEEEECCCCceEEeeeecCCCCCeE-ecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         42 LSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF-NETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      |.|+|++|++|+..+. .+.+|||+++.+.   ...++|++++++.+|.| +|.|.|.             ++...+...
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~-------------i~~~~l~~~   64 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-------------VDDEELQDE   64 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEE-------------cChHHcCCC
Confidence            5799999999998774 6889999999983   37889999999999999 9999998             443334457


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeecc---ccccceEEEccc
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDL---AQTIEEWRELQS  161 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~---~~~~~~w~~L~~  161 (207)
                      .|.|+|||++.++++++||++.+++.++..   +...+.||+|.+
T Consensus        65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            899999999999999999999999999866   345789999974

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.74  E-value=9.6e-17  Score=120.22  Aligned_cols=120  Identities=33%  Similarity=0.481  Sum_probs=96.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      |+|+|++|++|...+..+.+|||+++.+....    ....+|++++++.+|.|+|+|.|.+             +.   .
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~~---~   65 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV-------------NP---R   65 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEE-------------cC---C
Confidence            78999999999999888899999999986431    1257899999999999999999984             22   2


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccccc------cceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT------IEEWRELQSVEGEGGQVYYLDGPKGNLATGKK  184 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~------~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~  184 (207)
                      ...+.|+|||++..+++++||++.+++.++..+.+      ..+||.|.+....       ....|+|.+.+.
T Consensus        66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~G~l~~~~~  131 (133)
T cd04033          66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-------SRVKGHLRLYMA  131 (133)
T ss_pred             CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-------CcceeEEEEEEe
Confidence            35789999999999899999999999999876543      3589999864332       134689998544

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=5.6e-17  Score=120.07  Aligned_cols=112  Identities=31%  Similarity=0.423  Sum_probs=91.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|+|++|++|+..    .+|||+++.+.   ....+|++++++.+|.|||+|.|.+               .......|
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~---------------~~~~~~~L   59 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSK---------------DRLQGSTL   59 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEc---------------CCCcCCEE
Confidence            78999999999877    68999999983   4678999999999999999999984               22245789


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeecccc-----ccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-----TIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK  184 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~-----~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~  184 (207)
                      .++|||++.. ++++||++.++|.++....     ...+||.|.+..+.        ...|+|.+.+.
T Consensus        60 ~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--------~~~G~i~l~~~  118 (121)
T cd08378          60 EVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--------RVGGELMLAVW  118 (121)
T ss_pred             EEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--------ccceEEEEEEE
Confidence            9999999876 7899999999999986532     34689999875541        35689988554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.73  E-value=3.2e-17  Score=119.44  Aligned_cols=106  Identities=35%  Similarity=0.583  Sum_probs=88.4

Q ss_pred             CEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         40 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      |.|+|+|++|++|+..+.. +.+|||+++.+.+.+....+|++++++.+|.|+|.|.|.+            .+.+....
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~------------~~~~~~~~   68 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV------------TPDEVKAG   68 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEe------------CchhccCC
Confidence            5799999999999998877 8999999999865555678999999999999999999984            22111234


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                      ..|.|+|||++.++.+++||++.+++.++.   ....|+++.
T Consensus        69 ~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~~  107 (111)
T cd04041          69 ERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGRR  107 (111)
T ss_pred             CEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence            689999999999999999999999999985   345687764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.72  E-value=1.9e-16  Score=117.16  Aligned_cols=103  Identities=33%  Similarity=0.562  Sum_probs=87.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|+|++|++|...+..|.+|||+.+.+  .+....+|++++++.+|.|+|.|.|.+             +.   ....+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~--~~~~~~kT~v~~~t~nP~Wne~f~~~~-------------~~---~~~~l   63 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEYTVHL-------------PP---GFHTV   63 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEE--CCEeeeeeeeEcCCCCCcccceEEEee-------------CC---CCCEE
Confidence            7899999999999998899999999998  333457999999999999999999984             21   23689


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEcccc
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSV  162 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L~~~  162 (207)
                      .|.+||++.+++++++|++.+++..+..+ ...++|++|.+.
T Consensus        64 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~  105 (121)
T cd04054          64 SFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEV  105 (121)
T ss_pred             EEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeee
Confidence            99999999999999999999999887643 346799999764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.72  E-value=1.9e-16  Score=121.78  Aligned_cols=122  Identities=21%  Similarity=0.283  Sum_probs=94.0

Q ss_pred             EEEEEEEeeC--CCCCCCCCCCCcEEEEEEE-C-CCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         42 LSVTVIQAED--LPALDMGGTSDPYVKVYLL-P-DKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        42 L~V~I~~a~n--L~~~~~~g~~dpyv~v~l~-~-~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..++|..|++  |+.....+.+||||++.+. | ...++.+|++++.|.+|.|||+|.|.++...+..       ...+.
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~-------~R~l~   76 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSF-------QRVFK   76 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchh-------hhhcc
Confidence            4556666666  6676667889999999973 4 3446899999999999999999999952111111       00245


Q ss_pred             CceEEEEEEecCCC-CCCceeEEEEEeceeeccccccceEEEccccCCCCceEE
Q psy17645        118 NKTLVFAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVY  170 (207)
Q Consensus       118 ~~~l~i~v~d~~~~-~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~  170 (207)
                      ...|.++|||.+.+ .+|++||++.++|+.+..+...+.|++|....+..++++
T Consensus        77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l  130 (155)
T cd08690          77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKL  130 (155)
T ss_pred             CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEE
Confidence            67899999999876 579999999999999987777888999997777666666

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.72  E-value=2.5e-16  Score=118.61  Aligned_cols=122  Identities=27%  Similarity=0.425  Sum_probs=95.1

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC----c
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA----D  115 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~----~  115 (207)
                      ++|+|+|++|++|+..+..|.+|||+++.+   ..+.++|++++++.+|.|+|.|.|..            ....    +
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~v~~~t~nP~Wne~~~f~~------------~~~~~~~~~   65 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSF---LNQSQETEVIKETLSPTWDQTLIFDE------------VELYGSPEE   65 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEE---CCeeeEeeeEcCCCCCccCcEEEEee------------eeccCChHH
Confidence            479999999999999998899999999998   35688999999999999999999974            2110    1


Q ss_pred             C--CCceEEEEEEecCCCCCCceeEEEEE-eceeecc---ccccceEEEccccCCCCceEEeecCCCCceeeeceee
Q psy17645        116 A--MNKTLVFAIFDFDRFSKHDQIGEVKV-ALCQIDL---AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKAL  186 (207)
Q Consensus       116 ~--~~~~l~i~v~d~~~~~~~~~lG~~~v-~L~~l~~---~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~  186 (207)
                      +  ....+.++|||++..+++++||++.+ ++..+..   .....+|++|.....          ..|+|.+.+.+.
T Consensus        66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~----------~~Geil~~~~~~  132 (135)
T cd04017          66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQ----------SAGELLAAFELI  132 (135)
T ss_pred             hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCC----------chhheeEEeEEE
Confidence            1  22578999999999889999999986 4444432   356679999974332          568888865543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.72  E-value=2.9e-16  Score=121.49  Aligned_cols=108  Identities=28%  Similarity=0.450  Sum_probs=90.0

Q ss_pred             CCEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEEECCCCceEEeeeecCCCCC
Q psy17645         39 ANSLSVTVIQAEDLPALD------------------------------MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP   88 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~------------------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P   88 (207)
                      .+.|.|+|++|++|+.++                              ..|.+||||.+.+  .+.+..+|++++++.+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l--~~~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL--AGARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE--CCeEeeEEEEeCCCCCC
Confidence            578999999999999876                              2466899999998  33456799999999999


Q ss_pred             eEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645         89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus        89 ~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      .|||.|.|.+             .  . ....|.|.|||++.++ +++||++.++++++..+...++|++|.+..+.
T Consensus        84 ~WnE~F~~~~-------------~--~-~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~  143 (158)
T cd04015          84 VWNESFHIYC-------------A--H-YASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGK  143 (158)
T ss_pred             ccceEEEEEc-------------c--C-CCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCC
Confidence            9999999984             2  1 2357999999998875 58999999999999888888999999875433

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.72  E-value=1.5e-16  Score=120.34  Aligned_cols=123  Identities=32%  Similarity=0.411  Sum_probs=96.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEEC-CCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~-~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      |+|.|++|++|+.. ..+.+|||+++.+.. .....++|+++.++.+|.|+|.|.|.+...++...+...++..++....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 788999999999863 2256889999999999999999999963222211111112223446679


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      |.|+|||.+..+++++||++.++|.++........|+.|.+....
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~  124 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP  124 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence            999999999888899999999999998777778899999986543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=1.2e-16  Score=115.24  Aligned_cols=100  Identities=26%  Similarity=0.381  Sum_probs=85.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|+|.+|++|+..+..+.+||||++.+   +.+.++|+++..+.+|.|||.|.|.+             .  ......|
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~v-------------~--~~~~~~l   63 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTV---GKTTQKSKVKERTNNPVWEEGFTFLV-------------R--NPENQEL   63 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEE---CCEEEeCccccCCCCCcccceEEEEe-------------C--CCCCCEE
Confidence            7899999999999888899999999999   34788999999999999999999995             2  1234689


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeecccc--ccceEEEcccc
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQSV  162 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~--~~~~w~~L~~~  162 (207)
                      .|+|||.+.   +++||++.++|.++....  ..++||+|.+.
T Consensus        64 ~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          64 EIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence            999999886   789999999999986553  56799999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.72  E-value=3.3e-16  Score=114.95  Aligned_cols=118  Identities=31%  Similarity=0.507  Sum_probs=95.4

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.|.|+|++|++|+..+..+.+|||+++.+   .....+|+++.++.+|.|+|+|.|.+             .  + ...
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~~~~-------------~--~-~~~   61 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLEL---VNARLQTHTIYKTLNPEWNKIFTFPI-------------K--D-IHD   61 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEE---CCEeeecceecCCcCCccCcEEEEEe-------------c--C-cCC
Confidence            578999999999999888889999999998   34567999999999999999999984             2  2 246


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeecee
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKA  185 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~  185 (207)
                      .+.|+|||++....+++||++.+++.++..+  ..+|+.|.+.....       ...|+|.+.+.+
T Consensus        62 ~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~-------~~~G~i~l~~~~  118 (119)
T cd08377          62 VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG--ERKWYALKDKKLRT-------RAKGSILLEMDV  118 (119)
T ss_pred             EEEEEEEECCCCCCCceeeEEEEEHHHCCCC--CceEEECcccCCCC-------ceeeEEEEEEEe
Confidence            8999999999888899999999999988644  46899998654321       135777775543

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>KOG1028|consensus

Probab=99.72  E-value=5e-17  Score=143.43  Aligned_cols=147  Identities=33%  Similarity=0.461  Sum_probs=127.5

Q ss_pred             cceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCC
Q psy17645         10 KSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLN   87 (207)
Q Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~   87 (207)
                      -.|+.|++.......-.|+..++++|.+..++|+|.|++|+||...+..+..||||++.+.++..  .+++|.+.+++.+
T Consensus       268 ~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~n  347 (421)
T KOG1028|consen  268 LFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLN  347 (421)
T ss_pred             eeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCC
Confidence            45999999877776555999999999999999999999999999999999999999999986653  3789999999999


Q ss_pred             CeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCc
Q psy17645         88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG  167 (207)
Q Consensus        88 P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~  167 (207)
                      |.|||+|.|.             ++.+.+....+.++||+++.++.+++||++.+....  .+....+|.++...+....
T Consensus       348 pv~nesf~F~-------------vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv  412 (421)
T KOG1028|consen  348 PVFNETFVFD-------------VPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV  412 (421)
T ss_pred             CcccccEEEe-------------CCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence            9999999998             777788888999999999999999999999988765  4455778888877777666


Q ss_pred             eEEe
Q psy17645        168 QVYY  171 (207)
Q Consensus       168 ~~~~  171 (207)
                      ..|+
T Consensus       413 ~~wh  416 (421)
T KOG1028|consen  413 AQWH  416 (421)
T ss_pred             eeeE
Confidence            6664

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.71  E-value=2.8e-16  Score=115.55  Aligned_cols=104  Identities=36%  Similarity=0.556  Sum_probs=88.8

Q ss_pred             CEEEEEEEEeeCCCCCCC------CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645         40 NSLSVTVIQAEDLPALDM------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY  113 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~  113 (207)
                      +.|+|+|++|+||+..+.      .+.+|||+.+.+.   .+.++|++++++.+|.|+|.|.|.+             . 
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v-------------~-   63 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVV-------------D-   63 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEe-------------C-
Confidence            468999999999998764      3689999999983   4789999999999999999999984             2 


Q ss_pred             CcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                       +.....|.|+|||++.. ++++||++.+++.++..+....+|++|.+.
T Consensus        64 -~~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  110 (121)
T cd08391          64 -EVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV  110 (121)
T ss_pred             -CCCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence             22457999999999987 889999999999998877777899999854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>KOG0696|consensus

Probab=99.71  E-value=1e-17  Score=144.22  Aligned_cols=118  Identities=38%  Similarity=0.671  Sum_probs=105.0

Q ss_pred             ceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645         29 PEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEV  106 (207)
Q Consensus        29 ~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~  106 (207)
                      ..+.+..+.....|.|.|.+|+||.+++.+|.+|||+++.+.|+.+  .+++|++++.+++|+|||+|.|.+        
T Consensus       169 Grl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~L--------  240 (683)
T KOG0696|consen  169 GRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKL--------  240 (683)
T ss_pred             ceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEec--------
Confidence            4567778889999999999999999999999999999999987654  488999999999999999999995        


Q ss_pred             eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                          .| .+ ....|.++|||+++.++++|+|...+.++++ .+.+.+.||.|.+
T Consensus       241 ----kp-~D-kdrRlsiEvWDWDrTsRNDFMGslSFgisEl-~K~p~~GWyKlLs  288 (683)
T KOG0696|consen  241 ----KP-SD-KDRRLSIEVWDWDRTSRNDFMGSLSFGISEL-QKAPVDGWYKLLS  288 (683)
T ss_pred             ----cc-cc-ccceeEEEEecccccccccccceecccHHHH-hhcchhhHHHHhh
Confidence                34 33 5679999999999999999999999999998 5568899999985

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.71  E-value=1e-16  Score=116.65  Aligned_cols=106  Identities=26%  Similarity=0.396  Sum_probs=88.1

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      +.+.|+|+|++|++|.    .+.+||||++.+.   .++++|+++.++.+|.|+|.|.|.+.           .+..++.
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~-----------~~~~~l~   63 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFH-----------ESPDELF   63 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecC-----------CCHHHHh
Confidence            5678999999999998    5689999999993   46789999999999999999999841           2223334


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeecccc---ccceEEEccc
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ---TIEEWRELQS  161 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~---~~~~w~~L~~  161 (207)
                      ...|.|.|||.+.++++++||++.++|+++..+.   -...|+.|.+
T Consensus        64 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            5789999999999888999999999999986653   3468999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.71  E-value=3.4e-16  Score=114.31  Aligned_cols=113  Identities=39%  Similarity=0.605  Sum_probs=96.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |+|.|++|++|+..+..+.+|||+++.+.  +...++|+++.++.+|.|+|+|.|.+             +  +.....+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~-------------~--~~~~~~l   63 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPV-------------P--SRVRAVL   63 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEe-------------c--cCCCCEE
Confidence            57899999999998878889999999983  44568999999999999999999984             2  1144789


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                      .|++||++..+++++||++.+++.++..+.....|++|.+..+...+.++
T Consensus        64 ~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          64 KVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             EEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            99999999888899999999999999888788899999987776555554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.70  E-value=3.3e-16  Score=116.04  Aligned_cols=110  Identities=31%  Similarity=0.435  Sum_probs=92.5

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCc-CC
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD-AM  117 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~-~~  117 (207)
                      +.|.|+|++|++|+..+..+.+|||+++.+   ..+..+|++.. ++.+|.|+|.|.|.+             +... ..
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~t~nP~Wne~f~f~v-------------~~~~~~~   64 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC---RTQERKSKVAKGDGRNPEWNEKFKFTV-------------EYPGWGG   64 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEE---CCEeeeeeEcCCCCCCCcccceEEEEe-------------cCcccCC
Confidence            578999999999998887889999999998   34567888877 489999999999985             2111 12


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      ...|.|+|||.+....+++||++.++|.++..+.....|+.|.+....
T Consensus        65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~  112 (124)
T cd04049          65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYN  112 (124)
T ss_pred             CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccceE
Confidence            468999999999888899999999999999888888999999986655

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=8e-16  Score=113.71  Aligned_cols=107  Identities=25%  Similarity=0.381  Sum_probs=91.2

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.|+|+|++|++|...+..+.+|||+++.+  .+....+|+++..+.+|.|+|.|.|.+             ..   ...
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~v-------------~~---~~~   62 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV--NGIVKGRTVTISNTLNPVWDEVLYVPV-------------TS---PNQ   62 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEE--CCEEeeceeEECCCcCCccCceEEEEe-------------cC---CCC
Confidence            468999999999999988899999999998  234578999999999999999999984             21   236


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      .|.|+|||++..+.+++||++.+++.++..+ ....||.|.+....
T Consensus        63 ~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~  107 (120)
T cd04045          63 KITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEE  107 (120)
T ss_pred             EEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcc
Confidence            8999999999999999999999999998665 67899999876543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1030|consensus

Probab=99.69  E-value=2.5e-16  Score=120.54  Aligned_cols=97  Identities=37%  Similarity=0.538  Sum_probs=86.1

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..+-|+|++.+|.||..++..+.+||||.+.+   +.++.+|+++..++||+|||.|.|.+               .+ .
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~q~lkT~~v~~n~NPeWNe~ltf~v---------------~d-~   64 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GNQKLKTRVVYKNLNPEWNEELTFTV---------------KD-P   64 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEE---CCeeeeeeeecCCCCCcccceEEEEe---------------cC-C
Confidence            35789999999999999998899999999999   67899999999999999999999995               23 4


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeecccccc
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  153 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~  153 (207)
                      ...|.+.|||+|.++.|+++|.|.|+|..+......
T Consensus        65 ~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~  100 (168)
T KOG1030|consen   65 NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM  100 (168)
T ss_pred             CceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence            579999999999999999999999999987654333

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.68  E-value=1.1e-15  Score=113.40  Aligned_cols=104  Identities=25%  Similarity=0.396  Sum_probs=87.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |+|+|++|++|...+..+.+|||+++.+  ++.+.++|++++++.+|.|+|.|.|.+             +    ....|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~--~~~~~~kT~v~~~t~nP~Wne~f~~~~-------------~----~~~~l   62 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDLTV-------------G----PSSII   62 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEE--CCccceEccEEcCCCCCcccceEEEEe-------------C----CCCEE
Confidence            7899999999999888899999999998  346788999999999999999999994             3    14689


Q ss_pred             EEEEEecCCCCC--CceeEEEEEeceeecccc-ccceEEEccccCC
Q psy17645        122 VFAIFDFDRFSK--HDQIGEVKVALCQIDLAQ-TIEEWRELQSVEG  164 (207)
Q Consensus       122 ~i~v~d~~~~~~--~~~lG~~~v~L~~l~~~~-~~~~w~~L~~~~~  164 (207)
                      .|+|||++..+.  +++||++.+++.++.... ....|++|.....
T Consensus        63 ~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  108 (123)
T cd08382          63 TIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK  108 (123)
T ss_pred             EEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCC
Confidence            999999988765  579999999999986443 4478999966443

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.68  E-value=1.4e-15  Score=112.90  Aligned_cols=107  Identities=27%  Similarity=0.420  Sum_probs=88.3

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.++|+|++|++|+..+..+.+|||+++..........+|+++.++.+|.|||.|.|.+             ...  ...
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i-------------~~~--~~~   65 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEV-------------PAG--EPL   65 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEc-------------CCC--CCC
Confidence            46899999999999998889999999998743334578999999999999999999984             321  346


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeecc---ccccceEEEccc
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDL---AQTIEEWRELQS  161 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~---~~~~~~w~~L~~  161 (207)
                      .|.|+||+.+..+++++||++.++|..+..   +.....|++|.+
T Consensus        66 ~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~  110 (126)
T cd04043          66 WISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT  110 (126)
T ss_pred             EEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence            899999999988889999999999987543   335678999974

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.68  E-value=5.3e-16  Score=119.23  Aligned_cols=105  Identities=38%  Similarity=0.576  Sum_probs=88.3

Q ss_pred             EECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--------------------------ceEEeeeecCCCCC
Q psy17645         35 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--------------------------KKFETKVHRKTLNP   88 (207)
Q Consensus        35 y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--------------------------~~~~T~~~~~t~~P   88 (207)
                      ..++.+.|.|+|++|++|...+..|.+|||+++.+.+...                          ..++|+++.++.+|
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            4556889999999999999999889999999999854321                          24789999999999


Q ss_pred             eEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645         89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus        89 ~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                      .|+|.|.|.+               ..+....|.|+|||++    +++||++.+++.++. +...++||.|
T Consensus       103 ~WnE~F~f~v---------------~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFEV---------------EDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             ccccEEEEEe---------------ccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            9999999985               2224578999999998    789999999999987 4567999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.67  E-value=1.8e-15  Score=111.68  Aligned_cols=121  Identities=31%  Similarity=0.502  Sum_probs=94.0

Q ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         40 NSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      +.|.|+|.+|++|+..+ ..+.+|||+.+.+... ....+|+++.++.+|.|+|.|.|.+             .   ...
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v-------------~---~~~   64 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILV-------------N---SLT   64 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEe-------------C---CCC
Confidence            57999999999999654 3467899999998421 4678999999999999999999985             2   135


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeeccccccce-EEEccccCCCCceEEeecCCCCceeeeceeeeec
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQVYYLDGPKGNLATGKKALYLP  189 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~-w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~  189 (207)
                      ..|.|+|||.+..+.+++||.+.++|.++..+..... |..+.. .+.         ..|+|.+  .+.|.|
T Consensus        65 ~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~-~~k---------~~G~i~~--~l~~~p  124 (124)
T cd04044          65 EPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLR-NGK---------PVGELNY--DLRFFP  124 (124)
T ss_pred             CEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhc-CCc---------cceEEEE--EEEeCC
Confidence            7899999999988889999999999999977766654 444432 221         3488888  444655

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.67  E-value=2.1e-15  Score=112.44  Aligned_cols=114  Identities=30%  Similarity=0.468  Sum_probs=91.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      .|+|+|++|++|+..+..+.+|||+.+.+   +....+|+++.++.+|.|+|.|.|.+            ..    ....
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~v~~t~~P~Wne~f~f~~------------~~----~~~~   62 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQV---GKTKKRTKTIPQNLNPVWNEKFHFEC------------HN----SSDR   62 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEE---CCEeeecceecCCCCCccceEEEEEe------------cC----CCCE
Confidence            68999999999999988889999999998   34578999999999999999999984            11    2357


Q ss_pred             EEEEEEecCCC-----------CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645        121 LVFAIFDFDRF-----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG  182 (207)
Q Consensus       121 l~i~v~d~~~~-----------~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~  182 (207)
                      +.|+|||++..           +.+++||++.+++.++.  .....|+.|.+.....       ...|+|.++
T Consensus        63 l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~-------~~~G~i~~~  126 (127)
T cd04027          63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKS-------AVSGAIRLH  126 (127)
T ss_pred             EEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCC-------cEeEEEEEE
Confidence            99999998752           46889999999999874  4467999998765331       124777763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.66  E-value=2.8e-15  Score=112.34  Aligned_cols=103  Identities=23%  Similarity=0.409  Sum_probs=87.6

Q ss_pred             CCEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceec
Q psy17645         39 ANSLSVTVIQAEDLPALDM----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFE  108 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~----------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~  108 (207)
                      .+.|+|+|++|++|...+.          .+.+||||++.+  .+.+..+|++++.+.+|.|||.|.|.+          
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~v----------   70 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV--DDTHIGKTSTKPKTNSPVWNEEFTTEV----------   70 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEE--CCEEEeEEeEcCCCCCCCcceeEEEEc----------
Confidence            4679999999999988775          267999999998  344567999999999999999999994          


Q ss_pred             cCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc--ccccceEEEcc
Q psy17645        109 QGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL--AQTIEEWRELQ  160 (207)
Q Consensus       109 ~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~--~~~~~~w~~L~  160 (207)
                         +    ....+.|.||+.+..+.++++|++.++|.++..  +.....|++|.
T Consensus        71 ---~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~  117 (132)
T cd04014          71 ---H----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE  117 (132)
T ss_pred             ---C----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence               3    346899999999888888999999999999876  46678999996

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.66  E-value=4.1e-15  Score=110.70  Aligned_cols=123  Identities=19%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      ...++|+|++|++|...+..|.+|||+.+.+   +.+.++|++++.+.+|.|+|.|.|..             .  . ..
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~--~-~~   62 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC---EGESVRSPVQKDTLSPEFDTQAIFYR-------------K--K-PR   62 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE---CCEEEEeCccCCCCCCcccceEEEEe-------------c--C-CC
Confidence            3578999999999999888899999999987   34678999999999999999999974             1  1 35


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN  190 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~  190 (207)
                      ..|.|+|||++... +++||++.+++.++.  ....+|+.|......     .-....|+|.+  ++.+.++
T Consensus        63 ~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~-----~~~~~~G~i~~--~~~~~~~  124 (126)
T cd04046          63 SPIKIQVWNSNLLC-DEFLGQATLSADPND--SQTLRTLPLRKRGRD-----AAGEVPGTISV--KVTSSDD  124 (126)
T ss_pred             CEEEEEEEECCCCC-CCceEEEEEecccCC--CcCceEEEcccCCCC-----CCCCCCCEEEE--EEEEccc
Confidence            68999999998764 799999999998753  344578888732221     12235688888  4445443

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=1.3e-15  Score=110.58  Aligned_cols=95  Identities=29%  Similarity=0.440  Sum_probs=79.6

Q ss_pred             CEEEEEEEEeeCCCCCCCC----CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         40 NSLSVTVIQAEDLPALDMG----GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~----g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      +.|.|+|++|++|+..+..    +.+|||+++.+   +.+.++|++++++.+|.|+|.|.|.+             ...+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~~~~kT~v~~~t~nPvWne~f~f~v-------------~~~~   64 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFEV-------------YPHE   64 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CCEeEeeeeecCCCCCcccceEEEEE-------------eCcc
Confidence            5799999999999987532    35899999998   45678999999999999999999984             2122


Q ss_pred             CCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645        116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  151 (207)
Q Consensus       116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~  151 (207)
                       ....|.|.|||++..+++++||++.++|.++..+.
T Consensus        65 -~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          65 -KNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             -CCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence             33589999999999999999999999999986553

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.66  E-value=3.1e-15  Score=111.33  Aligned_cols=120  Identities=25%  Similarity=0.422  Sum_probs=95.4

Q ss_pred             EEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEE
Q psy17645         46 VIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAI  125 (207)
Q Consensus        46 I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v  125 (207)
                      |++|++|+.  ..+.+|||+++.+   +....+|++++++.+|.|+|.|.|.+             .........+.|+|
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~---~~~~~kT~v~~~~~nP~Wne~f~f~~-------------~~~~~~~~~l~~~v   63 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTF---RGVKKKTRVLENELNPVWNETFEWPL-------------AGSPDPDESLEIVV   63 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEE---CCEeeecceeCCCcCCcccceEEEEe-------------CCCcCCCCEEEEEE
Confidence            678999998  5788999999998   34578999999999999999999985             21112457899999


Q ss_pred             EecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecceee
Q psy17645        126 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGV  193 (207)
Q Consensus       126 ~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~~~  193 (207)
                      |+++..+.+++||++.++|.++..+.....|+.|.+..+.        ...|++.+  .+.|.|.-..
T Consensus        64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--------~~~~~l~l--~~~~~~~~~~  121 (127)
T cd08373          64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGR--------PTGATISL--EVSYQPPDGA  121 (127)
T ss_pred             EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCC--------cccEEEEE--EEEEeCCCCc
Confidence            9999988899999999999999888888899999765443        12356666  5557665443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.65  E-value=2.1e-15  Score=111.78  Aligned_cols=115  Identities=26%  Similarity=0.286  Sum_probs=94.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCc--CC
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD--AM  117 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~--~~  117 (207)
                      .|+|+|++|++|+..+..+.+|||+.+.+.  +..+++|++.. .+.+|.|+|.|.|.+             +...  ..
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~--~~~~~~T~~~~~~~~~P~Wne~f~f~v-------------~~~~~~~~   65 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWID--PSHKQSTPVDRDGGTNPTWNETLRFPL-------------DERLLQQG   65 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEEC--CCcccccccccCCCCCCCCCCEEEEEc-------------ChHhcccC
Confidence            378999999999998888999999999984  23678888875 589999999999984             3221  12


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeecccccc-----ceEEEccccCCCCceEE
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-----EEWRELQSVEGEGGQVY  170 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~-----~~w~~L~~~~~~~~~~~  170 (207)
                      ...|.|+|||++.++.+++||++.++|.++..+...     ..||.|....++..+.+
T Consensus        66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~  123 (125)
T cd04051          66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVL  123 (125)
T ss_pred             ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEE
Confidence            578999999999888899999999999998766543     68999998777765555

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.65  E-value=6.7e-15  Score=109.13  Aligned_cols=102  Identities=24%  Similarity=0.321  Sum_probs=82.2

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.|.|+|++|++|...+   ..+||+++.+   +.++.+|++.+. .+|.|||.|.|.+               .+ ...
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~~k~kT~v~~~-~nP~WnE~F~F~~---------------~~-~~~   58 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QNVKSTTIAVRG-SQPCWEQDFMFEI---------------NR-LDL   58 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CCEEeEeeECCC-CCCceeeEEEEEE---------------cC-CCC
Confidence            46899999999997543   4589999999   457788888877 4999999999995               22 234


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeecccccc--ceEEEccccCCC
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI--EEWRELQSVEGE  165 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~--~~w~~L~~~~~~  165 (207)
                      .|.|+|||++.+ .|+++|++.++|.++..+...  .+||+|.+.-..
T Consensus        59 ~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~  105 (127)
T cd08394          59 GLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNM  105 (127)
T ss_pred             EEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecChHHhc
Confidence            599999999865 889999999999998766444  699999964333

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.63  E-value=4.1e-15  Score=114.08  Aligned_cols=108  Identities=30%  Similarity=0.455  Sum_probs=87.5

Q ss_pred             EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645         41 SLSVTVIQAEDLPALDMGG--------------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEV  106 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g--------------~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~  106 (207)
                      .|.|+|++|++|+..+..+              .+||||++.+   ..++.+|++++++.+|.|||.|.|.+        
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~---~g~~~kT~v~~~t~nPvWNE~f~f~v--------   69 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF---AGQKVKTSVKKNSYNPEWNEQIVFPE--------   69 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE---CCEeeecceEcCCCCCCcceEEEEEe--------
Confidence            3789999999999887443              6899999998   34567999999999999999999984        


Q ss_pred             eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccc-------cceEEEccccCCC
Q psy17645        107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-------IEEWRELQSVEGE  165 (207)
Q Consensus       107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-------~~~w~~L~~~~~~  165 (207)
                          .. .. ....|.|+|||++..++++++|++.+++.++.....       ..+|+.|...+..
T Consensus        70 ----~~-p~-~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~  129 (151)
T cd04018          70 ----MF-PP-LCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE  129 (151)
T ss_pred             ----eC-CC-cCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence                11 11 246899999999998899999999999998755432       2489999876655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.62  E-value=1.4e-14  Score=110.37  Aligned_cols=126  Identities=25%  Similarity=0.373  Sum_probs=95.1

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      .+.|.|.|++|++|+..+     ++||.+.+  ++....+|+++.++.+|.|+|.|.|..            ++    .-
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~------------~~----~~   66 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSN------------LP----PV   66 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecC------------CC----cc
Confidence            456899999999998764     79999999  345567999999999999999999985            44    23


Q ss_pred             ceEEEEEEecCC-C---CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCC--CCceeeeceeeeecc
Q psy17645        119 KTLVFAIFDFDR-F---SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGP--KGNLATGKKALYLPN  190 (207)
Q Consensus       119 ~~l~i~v~d~~~-~---~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~--~g~i~~~~~~~~~~~  190 (207)
                      ..++|.||..+. .   ..+.+||.+.|++.++..+...+.||+|.+..+..... ..+..  .+.|++  ++.|.+.
T Consensus        67 ~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~-~~~~~~~~~~lri--k~rf~~~  141 (146)
T cd04013          67 SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG-GKEGKGESPSIRI--KARYQST  141 (146)
T ss_pred             cEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc-cccccCCCCEEEE--EEEEEEe
Confidence            579999986542 2   25789999999999999888999999999866653111 11122  245555  6666653

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.62  E-value=1.7e-14  Score=105.41  Aligned_cols=114  Identities=34%  Similarity=0.501  Sum_probs=85.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|+|++|++|+..   +.+|||+.+.+.  +.+.++|++++. .+|.|+|+|.|.             ++..++....+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~-------------v~~~~~~~~~l   62 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFD-------------DPPPDVTFFTL   62 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEe-------------cCCccccEEEE
Confidence            78999999999876   789999999983  345678999988 999999999998             44334344678


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK  183 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~  183 (207)
                      .+.+|+.+....+.++|.+.  +..+..+...++|++|.+....       ....|+|.+.+
T Consensus        63 ~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~w~~L~~~~~~-------~~~~G~l~l~~  115 (117)
T cd08383          63 SFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDEWFPLTPVDPD-------SEVQGSVRLRA  115 (117)
T ss_pred             EEEEEecccCCCeeEEEEEE--ecCcCCCCcceeEEECccCCCC-------CCcCceEEEEE
Confidence            88899988766566666655  4455556778899999876542       12357887744

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.59  E-value=1.8e-14  Score=107.46  Aligned_cols=107  Identities=27%  Similarity=0.295  Sum_probs=85.0

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ..|..+|. ...-....+.|.|+|.+|++|+. +..+.+|||+++.+   +.+.++|++++++.+|.|+|+|.|..    
T Consensus        12 ~~~~~~~~-~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~---~~~~~kT~vi~~t~nPvWNE~F~f~~----   82 (127)
T cd04032          12 SSPNVNSN-CCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFF---GGQEKRTEVIWNNNNPRWNATFDFGS----   82 (127)
T ss_pred             CCCCcCCC-cCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEE---CCccccCceecCCCCCcCCCEEEEec----
Confidence            34555554 22224467899999999999984 55678999999998   34588999999999999999999973    


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  148 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~  148 (207)
                              ....  ....|.|+|||++..+.+++||++.++|....
T Consensus        83 --------~~~~--~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          83 --------VELS--PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             --------ccCC--CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence                    2211  45799999999999999999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.58  E-value=9.4e-14  Score=104.94  Aligned_cols=116  Identities=27%  Similarity=0.329  Sum_probs=90.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC----------ceEEeeeecCCCCCeE-ecEEEEeeecccccceecc
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----------KKFETKVHRKTLNPVF-NETFVFKVSFLNRSEVFEQ  109 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~----------~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~~~~~~~  109 (207)
                      ...|.+++|+||+ .+..|.+|||+++.+.+.+.          +.++|+++.++.+|.| +|.|.|.+           
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v-----------   69 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVG-----------   69 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEc-----------
Confidence            3678999999998 66678999999999976442          4789999999999999 99999983           


Q ss_pred             CcccCcCCCceEEEEEEecCCCCC---CceeEEEEEeceeecccc---ccceEEEccccCCCCceEEeecCCCCceee
Q psy17645        110 GVPYADAMNKTLVFAIFDFDRFSK---HDQIGEVKVALCQIDLAQ---TIEEWRELQSVEGEGGQVYYLDGPKGNLAT  181 (207)
Q Consensus       110 ~~~~~~~~~~~l~i~v~d~~~~~~---~~~lG~~~v~L~~l~~~~---~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~  181 (207)
                        .    ....|.++|||++..++   +++||++.+++.++..+.   ....|+.|.....       .+...|++.+
T Consensus        70 --~----~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~-------~s~v~G~~~l  134 (137)
T cd08691          70 --L----PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP-------TDHVSGQLTF  134 (137)
T ss_pred             --C----CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC-------CCcEEEEEEE
Confidence              2    23589999999765333   689999999999986552   3457998875432       3444577776

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.56  E-value=7e-14  Score=103.07  Aligned_cols=102  Identities=28%  Similarity=0.387  Sum_probs=85.1

Q ss_pred             EEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         45 TVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        45 ~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      ..++|++|+..+..+.+|||+++.+.+..    ....+|++++++.+|.|+|.|.|.+             ...  ....
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~-------------~~~--~~~~   69 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDY-------------YFE--EVQK   69 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEE-------------EeE--eeeE
Confidence            35789999999888999999999996543    1358999999999999999999973             211  2358


Q ss_pred             EEEEEEecCC----CCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        121 LVFAIFDFDR----FSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       121 l~i~v~d~~~----~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                      +.|+|||++.    .+++++||++.+++.++..+.....|+.|.+
T Consensus        70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            9999999987    7889999999999999987777888999954

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.55  E-value=7e-14  Score=106.64  Aligned_cols=91  Identities=38%  Similarity=0.618  Sum_probs=80.3

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.|+|+|++|+||+..+. +.+|||+.+.+   +.+..+|++++++.+|.|+|.|.|.+             +  + ...
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~~~~kT~vvk~t~nP~WnE~f~f~i-------------~--~-~~~   61 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLSV-------------P--N-PMA   61 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CCEEEEeeeEcCCCCCeecccEEEEe-------------c--C-CCC
Confidence            579999999999998886 88999999998   45789999999999999999999985             2  2 256


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  150 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~  150 (207)
                      .+.|+|||++.++.+++||++.+++.++...
T Consensus        62 ~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          62 PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence            8999999999999999999999999987544

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.55  E-value=6.4e-14  Score=104.03  Aligned_cols=92  Identities=33%  Similarity=0.446  Sum_probs=77.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      .|+|.|++|++|...+..+.+|||+++.+.. .....+|++++++.+|.|+|.|.|.+             .  ......
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~~kT~~v~~t~nP~Wne~f~f~~-------------~--~~~~~~   64 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGK-KKINDRDNYIPNTLNPVFGKMFELEA-------------T--LPGNSI   64 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECC-eeccceeeEEECCCCCccceEEEEEe-------------c--CCCCCE
Confidence            3789999999999998889999999999832 11346788888999999999999984             1  123468


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQID  148 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~  148 (207)
                      +.|+|||++.++.+++||++.++|.+..
T Consensus        65 L~~~V~d~d~~~~dd~iG~~~i~l~~~~   92 (124)
T cd04037          65 LKISVMDYDLLGSDDLIGETVIDLEDRF   92 (124)
T ss_pred             EEEEEEECCCCCCCceeEEEEEeecccc
Confidence            9999999999989999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.55  E-value=1.9e-13  Score=101.30  Aligned_cols=107  Identities=32%  Similarity=0.455  Sum_probs=85.5

Q ss_pred             CEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEECCC---CceEEeeeecCCC-CCeEecEEEEeeecccccceeccCccc
Q psy17645         40 NSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDK---KKKFETKVHRKTL-NPVFNETFVFKVSFLNRSEVFEQGVPY  113 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~--~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~-~P~w~e~~~f~~~~~~~~~~~~~~~~~  113 (207)
                      ..|+|+|++|+||+..+  ..+..|||+++.+....   ..+.+|+++..+. +|.|+|+|.|.+             ..
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~-------------~~   68 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV-------------TV   68 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEE-------------eC
Confidence            46899999999999877  47789999999986433   3578999987665 999999999985             21


Q ss_pred             CcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      .  ....+.++|||.+.. +++++|++.+++.++..+   ..|+.|....+.
T Consensus        69 ~--~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~  114 (128)
T cd00275          69 P--ELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE  114 (128)
T ss_pred             C--CeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC
Confidence            1  235789999999987 889999999999998543   468888765553

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.54  E-value=2.5e-13  Score=100.99  Aligned_cols=104  Identities=28%  Similarity=0.355  Sum_probs=83.9

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      .+|.|+|.+|+ |...+..+.+|||+.+.+.  +....+|+++..+.+|.|+|.|.|.+             +    ...
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~~-------------~----~~~   61 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVLV-------------T----PQS   61 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEEe-------------C----CCC
Confidence            46899999998 5555557889999999983  33478999999999999999999984             2    236


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeeccccc-----cceEEEccccC
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-----IEEWRELQSVE  163 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-----~~~w~~L~~~~  163 (207)
                      .|.|+|||++..+.+++||++.++|.++..+..     ...|++|....
T Consensus        62 ~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~  110 (125)
T cd04021          62 TLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN  110 (125)
T ss_pred             EEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence            899999999998899999999999998765432     23588887544

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>PLN02223 phosphoinositide phospholipase C

Probab=99.52  E-value=1.9e-13  Score=122.10  Aligned_cols=138  Identities=18%  Similarity=0.302  Sum_probs=104.8

Q ss_pred             CCCcceeEeeeecccccCC--CCCceeEEEEECcCCEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEEE--CCCCceE
Q psy17645          7 YSKKSFYLLNLKVLLTDLP--IFKPEQTLEYDFNANSLSVTVIQAEDLPAL-----DMGGTSDPYVKVYLL--PDKKKKF   77 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~--~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~-----~~~g~~dpyv~v~l~--~~~~~~~   77 (207)
                      .||+.+|+|||.+++...+  .++|....   .....|.|+|+.|.++...     +.....||||++.+.  |.+...+
T Consensus       377 ~NG~CGYVLKP~~Lr~~~~~~~FdP~~~~---~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~  453 (537)
T PLN02223        377 ANGGCGYVKKPDFLLNAGPSGVFYPTENP---VVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIM  453 (537)
T ss_pred             cCCCCCceECChhhccCCcccccCCCCCc---ccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCccee
Confidence            5899999999999997543  56775321   1356799999999987521     123457899999984  4445567


Q ss_pred             EeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEE
Q psy17645         78 ETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR  157 (207)
Q Consensus        78 ~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~  157 (207)
                      +|.+..++.+|.|||+|.|.+             ...  .-..|.|.|+|++....++|+|++.+|+..+..|.   ++.
T Consensus       454 kT~v~nNg~nPvWne~F~F~i-------------~~P--ELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~V  515 (537)
T PLN02223        454 KTTVKNNEWKPTWGEEFTFPL-------------TYP--DLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAV  515 (537)
T ss_pred             EEEeCCCCcCceecceeEEEE-------------Ecc--CceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeE
Confidence            888888899999999999986             212  33688999999998888999999999999997663   556


Q ss_pred             EccccCCC
Q psy17645        158 ELQSVEGE  165 (207)
Q Consensus       158 ~L~~~~~~  165 (207)
                      +|.+..+.
T Consensus       516 pL~~~~g~  523 (537)
T PLN02223        516 PLYDERGK  523 (537)
T ss_pred             eccCCCcC
Confidence            77765554

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.50  E-value=3e-13  Score=98.46  Aligned_cols=101  Identities=26%  Similarity=0.431  Sum_probs=80.0

Q ss_pred             CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCce
Q psy17645         57 MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ  136 (207)
Q Consensus        57 ~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~  136 (207)
                      ..|.+||||.+.+  .+...++|+++..+.+|.|||.|.|.+             +  +.....|.|.|||.+.+ ++++
T Consensus         9 ~~G~~dPYv~v~v--~~~~~~kT~v~~~t~nP~Wne~f~f~v-------------~--~~~~~~l~i~v~d~~~~-~d~~   70 (111)
T cd04052           9 KTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNASTEFLV-------------T--DRRKSRVTVVVKDDRDR-HDPV   70 (111)
T ss_pred             cCCCCCceEEEEE--CCEEEEEEeeeccCCCCccCCceEEEe-------------c--CcCCCEEEEEEEECCCC-CCCe
Confidence            4688999999999  334568999999999999999999985             2  22456799999999988 8899


Q ss_pred             eEEEEEeceeecc-ccccceEEEccccCCCCceEEeecCCCCceeeeceeeeec
Q psy17645        137 IGEVKVALCQIDL-AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLP  189 (207)
Q Consensus       137 lG~~~v~L~~l~~-~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~  189 (207)
                      ||.+.++|.++.. +.....|+.|.+            ...|+|.+  ++.|.|
T Consensus        71 iG~~~v~L~~l~~~~~~~~~w~~L~~------------~~~G~i~~--~~~~~p  110 (111)
T cd04052          71 LGSVSISLNDLIDATSVGQQWFPLSG------------NGQGRIRI--SALWKP  110 (111)
T ss_pred             EEEEEecHHHHHhhhhccceeEECCC------------CCCCEEEE--EEEEec
Confidence            9999999998843 344579999974            12477777  566765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PLN03008 Phospholipase D delta

Probab=99.48  E-value=5.1e-13  Score=124.10  Aligned_cols=127  Identities=24%  Similarity=0.394  Sum_probs=98.1

Q ss_pred             cCCEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEEECCCCc
Q psy17645         38 NANSLSVTVIQAEDLPALDM------------------------------------------GGTSDPYVKVYLLPDKKK   75 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~------------------------------------------~g~~dpyv~v~l~~~~~~   75 (207)
                      -.+.|.++|++|++|+.++.                                          .+.+||||++.+  .+.+
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~L--g~~r   89 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVV--PQAT   89 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEE--CCcc
Confidence            46889999999998874110                                          246799999999  3455


Q ss_pred             eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645         76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE  155 (207)
Q Consensus        76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~  155 (207)
                      ..+|++++++.||.|||.|.|.+             .  . ....|.|.|+|.+.++ +++||++.+||.++..+...+.
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~v-------------a--h-~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~  152 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISI-------------A--H-PFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISG  152 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEe-------------c--C-CCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEE
Confidence            77999999999999999999995             2  2 2358999999999987 5899999999999999999999


Q ss_pred             EEEccccCCCCceEEeecCCCCceeeeceeeeecce
Q psy17645        156 WRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNV  191 (207)
Q Consensus       156 w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~  191 (207)
                      |++|....++..      ...++|.|  .+.|.|--
T Consensus       153 Wl~Ll~~~~kp~------k~~~kl~v--~lqf~pv~  180 (868)
T PLN03008        153 WFPVLGASGKPP------KAETAIFI--DMKFTPFD  180 (868)
T ss_pred             EEEccccCCCCC------CCCcEEEE--EEEEEEcc
Confidence            999987655311      11235555  55566643

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.47  E-value=1.1e-12  Score=94.95  Aligned_cols=94  Identities=26%  Similarity=0.460  Sum_probs=74.9

Q ss_pred             EEEEEEeeCCCCCCCCCCCCcEEEEEEECCC---CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         43 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        43 ~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      .+..++|++|+..+..+.+|||+++.+.+.+   ...++|++++++.+|.|+ .|.|....          +...+ ...
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~----------l~~~~-~~~   70 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQK----------LCNGD-YDR   70 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHH----------hcCCC-cCC
Confidence            3456789999999988999999999986543   236899999999999999 67776310          11011 247


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQID  148 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~  148 (207)
                      .|.|+|||++..+++++||++.+++.++.
T Consensus        71 ~l~~~V~d~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          71 PIKIEVYDYDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             EEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence            99999999999999999999999999986

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.46  E-value=5.7e-13  Score=99.87  Aligned_cols=111  Identities=28%  Similarity=0.370  Sum_probs=83.3

Q ss_pred             EEEEEEEEeeCCCCCC--CCC--CCCcEEEEEEECCCCceEEeeeecCCCC--CeEecEEEEeeeccccccee-------
Q psy17645         41 SLSVTVIQAEDLPALD--MGG--TSDPYVKVYLLPDKKKKFETKVHRKTLN--PVFNETFVFKVSFLNRSEVF-------  107 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~--~~g--~~dpyv~v~l~~~~~~~~~T~~~~~t~~--P~w~e~~~f~~~~~~~~~~~-------  107 (207)
                      .|+|.|.+|++++...  ..|  .+||||++++.+....+++|.++.++.+  |.||+.|.|++...+-...+       
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            3899999999966433  355  4999999999766567899999999988  99999999985321111000       


Q ss_pred             -ccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645        108 -EQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  151 (207)
Q Consensus       108 -~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~  151 (207)
                       -.--..+.+....+.+.|||.+.++.|+++|.++++|..+..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence             00000134567899999999999999999999999999886553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.46  E-value=6.6e-13  Score=120.59  Aligned_cols=138  Identities=20%  Similarity=0.234  Sum_probs=104.6

Q ss_pred             CCCcceeEeeeecccccCC---CCCceeEEEEECcCCEEEEEEEEeeCCCCCC------CCCCCCcEEEEEEE--CCCCc
Q psy17645          7 YSKKSFYLLNLKVLLTDLP---IFKPEQTLEYDFNANSLSVTVIQAEDLPALD------MGGTSDPYVKVYLL--PDKKK   75 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~---~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~------~~g~~dpyv~v~l~--~~~~~   75 (207)
                      .||+.+|+|||+.++...+   .++|.-..   .....|.|+|+.+.+++...      .....||||++.+.  |.+..
T Consensus       436 ~NG~CGYVLKP~~Lr~~~~~~~~fdP~~~~---~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~  512 (598)
T PLN02230        436 ANGGCGYVKKPDFLMDAGPNGQDFYPKDNS---CPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEV  512 (598)
T ss_pred             cCCCCCceECCHHhcCCCccccccCCCcCC---CcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCc
Confidence            6899999999999998654   46665221   23577999999999864221      12347999999984  44455


Q ss_pred             eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645         76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE  155 (207)
Q Consensus        76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~  155 (207)
                      +.+|++..++.+|.|+|+|.|.+.           +  .+  -..|.|.|+|++....++|+|++.+|+..|..|-.   
T Consensus       513 ~~kT~v~~n~~nP~Wneef~F~l~-----------v--PE--LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---  574 (598)
T PLN02230        513 MEKTKIEYDTWTPIWNKEFIFPLA-----------V--PE--LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH---  574 (598)
T ss_pred             ccceeccCCCCCCccCCeeEEEEE-----------c--Cc--eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc---
Confidence            778998889999999999999861           2  23  37899999999988889999999999999876633   


Q ss_pred             EEEccccCCC
Q psy17645        156 WRELQSVEGE  165 (207)
Q Consensus       156 w~~L~~~~~~  165 (207)
                      ...|.+..+.
T Consensus       575 ~V~L~~~~G~  584 (598)
T PLN02230        575 AVPLFNRKGV  584 (598)
T ss_pred             eEeccCCCcC
Confidence            4667665544

>PLN02952 phosphoinositide phospholipase C

Probab=99.46  E-value=1.1e-12  Score=119.34  Aligned_cols=138  Identities=22%  Similarity=0.299  Sum_probs=104.8

Q ss_pred             CCCcceeEeeeecccccC---CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCC------CCCCCcEEEEEEE--CCCCc
Q psy17645          7 YSKKSFYLLNLKVLLTDL---PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDM------GGTSDPYVKVYLL--PDKKK   75 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~---~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~------~g~~dpyv~v~l~--~~~~~   75 (207)
                      .|++.+|+|||+.++...   ..++|.-.+   +....|.|.|+.|.+++....      ....||||++.+.  |.+..
T Consensus       437 ~NG~cGYVlKP~~lr~~~~~~~~fdp~~~~---~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~  513 (599)
T PLN02952        437 ANGGCGYLKKPDFLMKKGFHDEVFDPKKKL---PVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNA  513 (599)
T ss_pred             cCCCCCceECCHHHcccCCcccccCCCCCC---CccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCc
Confidence            488999999999998642   245664322   235679999999988753211      1235899999884  44456


Q ss_pred             eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645         76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE  155 (207)
Q Consensus        76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~  155 (207)
                      +++|+++.++.+|.|+|+|.|.+             ...+  -..+.|.|||++..+.++|+|++.+|+..+..|.   +
T Consensus       514 ~~kTkvi~nN~nPvWnE~F~F~i-------------~~PE--LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R  575 (599)
T PLN02952        514 KKKTKIIEDNWYPAWNEEFSFPL-------------TVPE--LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---R  575 (599)
T ss_pred             ceeeeeccCCCCcccCCeeEEEE-------------EcCC--ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---e
Confidence            78999999889999999999985             2222  3678999999998888999999999999997664   4


Q ss_pred             EEEccccCCC
Q psy17645        156 WRELQSVEGE  165 (207)
Q Consensus       156 w~~L~~~~~~  165 (207)
                      |.+|.+..+.
T Consensus       576 ~VpL~~~~G~  585 (599)
T PLN02952        576 SVPLHDKKGE  585 (599)
T ss_pred             eEeCcCCCCC
Confidence            8899865554

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.44  E-value=1.3e-12  Score=95.78  Aligned_cols=83  Identities=24%  Similarity=0.305  Sum_probs=69.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      |.|+|.+|++|.     +.+||||.+.+.+.+.  ...+|++++++.+|.|||.|.|.+             +    ...
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-------------~----~s~   58 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-------------E----GSQ   58 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-------------C----CCC
Confidence            579999999995     4589999999876443  579999999999999999999994             3    356


Q ss_pred             eEEEEEEec-------CCCCCCceeEEEEEecee
Q psy17645        120 TLVFAIFDF-------DRFSKHDQIGEVKVALCQ  146 (207)
Q Consensus       120 ~l~i~v~d~-------~~~~~~~~lG~~~v~L~~  146 (207)
                      .+.+.|||+       +..+.|+++|.+.+.|+-
T Consensus        59 ~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          59 TLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             EEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            999999997       456788999998888753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.44  E-value=2e-12  Score=88.18  Aligned_cols=85  Identities=42%  Similarity=0.691  Sum_probs=72.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |+|+|.+|++|...+..+..+||+++.+.......++|+++..+.+|.|+|.|.|.+             ...  ....|
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~-------------~~~--~~~~l   65 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPL-------------DDP--DLDSL   65 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEE-------------SHG--CGTEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeee-------------ecc--cccce
Confidence            689999999999988888999999999975444679999999999999999999984             222  23459


Q ss_pred             EEEEEecCCCCCCceeEEEE
Q psy17645        122 VFAIFDFDRFSKHDQIGEVK  141 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~  141 (207)
                      .|+||+.+..+++++||++.
T Consensus        66 ~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   66 SFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             EEEEEEETSSSSEEEEEEEE
T ss_pred             EEEEEECCCCCCCCEEEEEC
Confidence            99999999988899999873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.44  E-value=1.6e-12  Score=117.85  Aligned_cols=138  Identities=23%  Similarity=0.286  Sum_probs=104.6

Q ss_pred             CCCcceeEeeeecccccCC---CCCceeEEEEECcCCEEEEEEEEeeCCC--CCC----CCCCCCcEEEEEEE--CCCCc
Q psy17645          7 YSKKSFYLLNLKVLLTDLP---IFKPEQTLEYDFNANSLSVTVIQAEDLP--ALD----MGGTSDPYVKVYLL--PDKKK   75 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~---~~~~~~~l~y~~~~~~L~V~I~~a~nL~--~~~----~~g~~dpyv~v~l~--~~~~~   75 (207)
                      .|++.+|+|||+.++....   .++|....   +....|.|+|+.+.++.  ...    .....||||++.+.  |.+..
T Consensus       419 ~NG~cGYVLKP~~lr~~~~~~~~fdp~~~~---~~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~  495 (581)
T PLN02222        419 ANGGCGYIKKPDLLLKSGSDSDIFDPKATL---PVKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTV  495 (581)
T ss_pred             cCCCCceEECCHHhccCCccccccCCCCCC---CccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcc
Confidence            5899999999999998765   56665432   23467999999998753  211    12357899999984  44556


Q ss_pred             eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645         76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE  155 (207)
Q Consensus        76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~  155 (207)
                      +++|+++.++.+|.|+|.|.|.+.           +  .+  -..|.|.|+|++....++|+|++.+|+..+..|-.   
T Consensus       496 ~~rTk~v~nn~nP~W~e~f~F~i~-----------~--Pe--LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---  557 (581)
T PLN02222        496 MKKTKTLEDNWIPAWDEVFEFPLT-----------V--PE--LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR---  557 (581)
T ss_pred             eeeeEecCCCCCcccCCeeEEEEE-----------c--Cc--eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc---
Confidence            789999998899999999999851           2  23  36889999999887889999999999999876633   


Q ss_pred             EEEccccCCC
Q psy17645        156 WRELQSVEGE  165 (207)
Q Consensus       156 w~~L~~~~~~  165 (207)
                      ...|.+..++
T Consensus       558 ~V~L~~~~g~  567 (581)
T PLN02222        558 AFPLHSRKGE  567 (581)
T ss_pred             eEEccCCCcC
Confidence            4566655444

>PLN02228 Phosphoinositide phospholipase C

Probab=99.41  E-value=4.8e-12  Score=114.51  Aligned_cols=138  Identities=20%  Similarity=0.337  Sum_probs=104.4

Q ss_pred             CCCcceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEE--CCCCceEE
Q psy17645          7 YSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPA---LD---MGGTSDPYVKVYLL--PDKKKKFE   78 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~---~~---~~g~~dpyv~v~l~--~~~~~~~~   78 (207)
                      .|++.+|+|||+.++.....++|....   +....|.|+|+.|.+|+.   ..   .....||||++.+.  |.+...++
T Consensus       401 ~NG~cGYVLKP~~Lr~~~~~f~p~~~~---p~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~r  477 (567)
T PLN02228        401 ANGGCGYVKKPRILLDEHTLFDPCKRL---PIKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYR  477 (567)
T ss_pred             hCCCCCceeCchhhcccccccCCccCC---CcCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcce
Confidence            478999999999999876667765332   224579999999998732   11   12347899999984  44556789


Q ss_pred             eeeecCCCCCeE-ecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEE
Q psy17645         79 TKVHRKTLNPVF-NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR  157 (207)
Q Consensus        79 T~~~~~t~~P~w-~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~  157 (207)
                      |+++.++.+|.| +|.|.|.+             ...+  -..|.|.|+|++....++|+|++.+|+..|..|-   +..
T Consensus       478 Tk~~~n~~nP~W~~e~f~F~~-------------~~pE--LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~V  539 (567)
T PLN02228        478 TETAVDQWFPIWGNDEFLFQL-------------RVPE--LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAV  539 (567)
T ss_pred             eeccCCCCCceECCCeEEEEE-------------EcCc--eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEE
Confidence            999988899999 99999985             2223  3688999999998788899999999999986653   345


Q ss_pred             EccccCCC
Q psy17645        158 ELQSVEGE  165 (207)
Q Consensus       158 ~L~~~~~~  165 (207)
                      .|.+..++
T Consensus       540 pL~~~~G~  547 (567)
T PLN02228        540 RLHDRAGK  547 (567)
T ss_pred             EccCCCCC
Confidence            67665554

>KOG0169|consensus

Probab=99.36  E-value=2.8e-12  Score=117.11  Aligned_cols=138  Identities=26%  Similarity=0.400  Sum_probs=104.5

Q ss_pred             CCcceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCC----CCCCCcEEEEEE--ECCCCceEEee-
Q psy17645          8 SKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDM----GGTSDPYVKVYL--LPDKKKKFETK-   80 (207)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~----~g~~dpyv~v~l--~~~~~~~~~T~-   80 (207)
                      |+-.+|+|||.+++....+++|.-.+.  +..-.|.|.|+.+.++.....    ...++|||.+.+  .|.+....+|+ 
T Consensus       586 NGgCGYVlKP~~L~~~~~~F~P~~~~~--~~~~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~  663 (746)
T KOG0169|consen  586 NGGCGYVLKPDFLLDSGSTFDPKSNLP--PVKKTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKV  663 (746)
T ss_pred             CCCccceECcHHHcCCCCccCCCCCCC--CCCceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhcee
Confidence            566899999999999888888842211  122279999999996654432    245789999887  35556688999 


Q ss_pred             eecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645         81 VHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus        81 ~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                      +..++.+|.|+|+|.|.+             ...+  -..|.|.|+|++..+.|+|+|+..+|+..+..|-.+   .+|.
T Consensus       664 v~~NgfnP~W~e~f~F~l-------------~vPE--LAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~  725 (746)
T KOG0169|consen  664 VKNNGFNPIWDEEFEFQL-------------SVPE--LALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYRH---VPLL  725 (746)
T ss_pred             eccCCcCcccCCeEEEEE-------------eccc--eeEEEEEEEecCCCCcccccceeeccHHHhhCceee---eeec
Confidence            566899999999999996             2223  378999999999999999999999999998766433   4555


Q ss_pred             ccCCC
Q psy17645        161 SVEGE  165 (207)
Q Consensus       161 ~~~~~  165 (207)
                      +..++
T Consensus       726 ~~~G~  730 (746)
T KOG0169|consen  726 SREGE  730 (746)
T ss_pred             CCCCc
Confidence            54444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.33  E-value=7.8e-12  Score=125.47  Aligned_cols=109  Identities=20%  Similarity=0.297  Sum_probs=90.9

Q ss_pred             CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         37 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      ---|.|.|+|.+|+||.  +..+.+||||.+.+.  ++.+.+|++++++.+|.|||.|.|.+.           .|+   
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g--~~~~~kTkvvk~~~nP~Wne~f~~~~~-----------~p~--- 2038 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLG--NGPPRQTKVVSHSSSPEWKEGFTWAFD-----------SPP--- 2038 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEEC--CCCcccccccCCCCCCCcccceeeeec-----------CCC---
Confidence            35789999999999998  447899999999993  344779999999999999999997740           221   


Q ss_pred             CCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645        117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                      ....+.++|||++.+++ +.+|++.+++.++-.++..+.||+|.+...
T Consensus      2039 ~~~~l~iev~d~d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~ 2085 (2102)
T PLN03200       2039 KGQKLHISCKSKNTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESN 2085 (2102)
T ss_pred             CCCceEEEEEecCccCC-CCCceEEEEHHHHhcCceeeeeeecCcccc
Confidence            23569999999999855 599999999999988899999999996433

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.30  E-value=6.7e-11  Score=82.40  Aligned_cols=97  Identities=46%  Similarity=0.680  Sum_probs=79.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      +.|.|.+|++|......+..+||+++.+.+.+....+|+....+.+|.|++.|.|.+             ...  ....|
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~-------------~~~--~~~~l   66 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV-------------PPP--ELAEL   66 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEe-------------cCc--ccCEE
Confidence            679999999999887657899999999954323578999999888999999999985             211  26799


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeecccccc
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  153 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~  153 (207)
                      .|++|+......+.++|.+.+++.++..+...
T Consensus        67 ~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       67 EIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             EEEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence            99999998877789999999999888655433

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.28  E-value=7.2e-11  Score=81.74  Aligned_cols=101  Identities=51%  Similarity=0.747  Sum_probs=83.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      |.|.|.+|++|.........+||+.+.+.  +....+|++...+.+|.|++.|.|.+             +..  ....+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~--~~~~~~T~~~~~~~~P~w~~~~~~~~-------------~~~--~~~~l   63 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLG--GKQKFKTKVVKNTLNPVWNETFEFPV-------------LDP--ESDTL   63 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEec--cCceEecceeCCCCCCcccceEEEEc-------------cCC--CCCEE
Confidence            46899999999887767789999999984  24678999999999999999999985             211  35789


Q ss_pred             EEEEEecCCCCCCceeEEEEEeceeec-cccccceEEEc
Q psy17645        122 VFAIFDFDRFSKHDQIGEVKVALCQID-LAQTIEEWREL  159 (207)
Q Consensus       122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~-~~~~~~~w~~L  159 (207)
                      .+++|+.+....+.++|.+.+++.++. .......|++|
T Consensus        64 ~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          64 TVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence            999999998877899999999999987 55666788765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1264|consensus

Probab=99.25  E-value=3e-11  Score=110.74  Aligned_cols=126  Identities=25%  Similarity=0.391  Sum_probs=97.6

Q ss_pred             CCCcceeEeeeecccccCCCCCceeE-EEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE--CCCCc-eEEeeee
Q psy17645          7 YSKKSFYLLNLKVLLTDLPIFKPEQT-LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL--PDKKK-KFETKVH   82 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~-l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~--~~~~~-~~~T~~~   82 (207)
                      .|+|.+|+|||+.|+++.  ++|.=. .+.......|.|.++.||.|+..+ -+.+.|||.+.+-  +-+.. .++|.+.
T Consensus      1033 ~ngrcGYvLqPs~Mrte~--fdP~n~e~~~~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~ 1109 (1267)
T KOG1264|consen 1033 LNGRCGYVLQPSSMRTEK--FDPMNPESQRGLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVN 1109 (1267)
T ss_pred             cCCceeeEecchhccccc--CCCCChHHhccccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEec
Confidence            589999999999999887  555321 222334567999999999999654 5667899999984  22233 4455556


Q ss_pred             cCCCCCeEe-cEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645         83 RKTLNPVFN-ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  150 (207)
Q Consensus        83 ~~t~~P~w~-e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~  150 (207)
                      .+.++|.|+ |.|.|.+            .   .+.-..|.|.|++.|.++...|||++..|+..+..|
T Consensus      1110 dNGlnPiWn~e~ftFeI------------~---nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1110 DNGLNPIWNPEKFTFEI------------Y---NPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             cCCCCCCCCCcceEEEe------------e---CCceEEEEEEEecccccCCcceeeeeecchhhhhcc
Confidence            789999999 9999996            2   224478999999999999889999999999988665

>KOG2059|consensus

Probab=99.23  E-value=2.6e-11  Score=109.71  Aligned_cols=115  Identities=30%  Similarity=0.489  Sum_probs=98.5

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      ...|.|+|.+|+||++.+..|..|+|+.+.+  +.....+|.++..++.|.|+|.|.|+             +|.   .-
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~-------------iP~---~F   65 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFE-------------IPR---TF   65 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEee--cchhhhhhhhhhhhcCCccccceEEe-------------cCc---ce
Confidence            4568999999999999999999999999999  45668899999999999999999999             453   33


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc--CCCCceEEee
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV--EGEGGQVYYL  172 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~--~~~~~~~~~l  172 (207)
                      ..+.|.|||.| +++|+.||.+.+.-.++....+.+.|+.|.+.  ..++.+++++
T Consensus        66 ~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l  120 (800)
T KOG2059|consen   66 RYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHL  120 (800)
T ss_pred             eeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEE
Confidence            68999999999 89999999999998888877888999999874  3444555544

>KOG2059|consensus

Probab=99.18  E-value=1.1e-10  Score=105.89  Aligned_cols=180  Identities=22%  Similarity=0.270  Sum_probs=127.3

Q ss_pred             CCcceeEeeeecccccCCCCCceeEEEEEC--cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE-CCCCceEEeeeecC
Q psy17645          8 SKKSFYLLNLKVLLTDLPIFKPEQTLEYDF--NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-PDKKKKFETKVHRK   84 (207)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~--~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~-~~~~~~~~T~~~~~   84 (207)
                      ++-+|+.|+|--. +..=.|.+++.+....  +...++|..++++.+.+.. ++.+|||+++.+. +......+|++.+.
T Consensus        98 ~~d~W~~L~~VD~-dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kk  175 (800)
T KOG2059|consen   98 GKDTWFSLQPVDP-DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKK  175 (800)
T ss_pred             CCccceeccccCC-ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeee
Confidence            6667888876432 2233477777766654  7778999999999888775 5669999999873 33334579999999


Q ss_pred             CCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEe-cCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645         85 TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFD-FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus        85 t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d-~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                      +.+|.|+|.|.|.+...++-.....+.+.++.....+.+++|+ .+....++|+|++.+++...........||.|++.+
T Consensus       176 t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~  255 (800)
T KOG2059|consen  176 TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRP  255 (800)
T ss_pred             ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCC
Confidence            9999999999998732221111111123233345788999998 455556899999999999887677888999999763


Q ss_pred             CCCceEEeecCCCCceeeeceeeeecceee
Q psy17645        164 GEGGQVYYLDGPKGNLATGKKALYLPNVGV  193 (207)
Q Consensus       164 ~~~~~~~~l~~~~g~i~~~~~~~~~~~~~~  193 (207)
                      .  +.+..-.+..|.+++  ++.|.-++..
T Consensus       256 ~--g~~~~~~~~lGslrl--~v~y~~D~Vl  281 (800)
T KOG2059|consen  256 N--GEKSSDGGDLGSLRL--NVTYTEDHVL  281 (800)
T ss_pred             C--cccCCCCCCccceee--eEEeeeceec
Confidence            3  333344556689998  5557766654

>KOG1011|consensus

Probab=99.16  E-value=7.5e-11  Score=106.19  Aligned_cols=120  Identities=25%  Similarity=0.415  Sum_probs=97.1

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      ...++++++.|.+|...+..|.+|||+.+..   ++.+.+|+++-..++|.|+|.|.|.+            ..    ..
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv---~ktkrrtrti~~~lnpvw~ekfhfec------------hn----st  354 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV---GKTKRRTRTIHQELNPVWNEKFHFEC------------HN----ST  354 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEee---cccchhhHhhhhccchhhhhheeeee------------cC----CC
Confidence            3468899999999999999999999999998   56788999999999999999999996            22    45


Q ss_pred             ceEEEEEEecCCC-----------CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceee
Q psy17645        119 KTLVFAIFDFDRF-----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKAL  186 (207)
Q Consensus       119 ~~l~i~v~d~~~~-----------~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~  186 (207)
                      ..|.+.|||.+.-           ..|+|+|+..+.+..+.  ...+-||+|..+..+       ++..|.|++.|++-
T Consensus       355 drikvrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdk-------savsgairlhisve  424 (1283)
T KOG1011|consen  355 DRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDK-------SAVSGAIRLHISVE  424 (1283)
T ss_pred             ceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccch-------hhccceEEEEEEEE
Confidence            6899999998742           35789999999888763  467889999865444       34557777765543

>KOG0905|consensus

Probab=99.13  E-value=7.8e-11  Score=111.41  Aligned_cols=120  Identities=35%  Similarity=0.601  Sum_probs=105.7

Q ss_pred             CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645         28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLNRSE  105 (207)
Q Consensus        28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~  105 (207)
                      .+.++|.|  .++.|.|.|--+++|+-...+..+||||++++.|+..+  +.+|+++++|.+|.|||...+.        
T Consensus      1514 qV~LsIsY--~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~-------- 1583 (1639)
T KOG0905|consen 1514 QVKLSISY--NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD-------- 1583 (1639)
T ss_pred             eEEEEEEE--cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec--------
Confidence            44555555  59999999999999987777888999999999887653  7899999999999999999998        


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                          |+|.+.+....|.++||..+....+.++|.+.++|..+...+....||.|..
T Consensus      1584 ----g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1584 ----GFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             ----CCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence                4787777889999999999999999999999999999988888889999964

>PLN02270 phospholipase D alpha

Probab=99.12  E-value=1.1e-09  Score=102.09  Aligned_cols=125  Identities=19%  Similarity=0.295  Sum_probs=99.8

Q ss_pred             CCEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEEECCCCceEEeeeecC-CCCCeEecEEEEeee
Q psy17645         39 ANSLSVTVIQAEDLPALD------------------MGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKVS   99 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~   99 (207)
                      .+.|.++|++|++|+..+                  ..+.++||+.+.+  .+.+..+|+++.+ ..+|.|+|.|.+.+ 
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~~-   83 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIYC-   83 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEee-
Confidence            578999999999997521                  1256799999999  5678899999987 46999999999886 


Q ss_pred             cccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCce
Q psy17645        100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNL  179 (207)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i  179 (207)
                                 -.    .-..+.|.|.|.+.++. .+||.+.+|..++..+..++.|+++....++        ..++..
T Consensus        84 -----------ah----~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~--------p~~~~~  139 (808)
T PLN02270         84 -----------AH----MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKN--------PIHGGS  139 (808)
T ss_pred             -----------cc----CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCC--------cCCCCC
Confidence                       22    34789999999998765 6999999999999999999999999886655        233444


Q ss_pred             eeeceeeeecc
Q psy17645        180 ATGKKALYLPN  190 (207)
Q Consensus       180 ~~~~~~~~~~~  190 (207)
                      .+++++.|.|-
T Consensus       140 ~~~~~~~f~~~  150 (808)
T PLN02270        140 KIHVKLQYFEV  150 (808)
T ss_pred             EEEEEEEEEEc
Confidence            55556667773

>KOG1328|consensus

Probab=98.95  E-value=4.6e-10  Score=102.13  Aligned_cols=109  Identities=37%  Similarity=0.508  Sum_probs=95.2

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      |-..+...|......|.|.|+-|+++.+.+.+|.+||||.+.+.|.-    ...++|+++..|++|+|+|.|+|.     
T Consensus       934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs----- 1008 (1103)
T KOG1328|consen  934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS----- 1008 (1103)
T ss_pred             CceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-----
Confidence            44688899999999999999999999999999999999999997632    247899999999999999999999     


Q ss_pred             ccceeccCcccCcC--CCceEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645        103 RSEVFEQGVPYADA--MNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  148 (207)
Q Consensus       103 ~~~~~~~~~~~~~~--~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~  148 (207)
                              +|.+.-  ....+.|+|+|++-++.++|-|++.+.|.++.
T Consensus      1009 --------Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1009 --------VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             --------cCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence                    554332  25788999999999999999999999998873

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.88  E-value=1.2e-08  Score=97.29  Aligned_cols=107  Identities=34%  Similarity=0.585  Sum_probs=90.7

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..+.|.|.+..|.||+..+..|.+||||.+.+  .+...++|++++++++|.|||.+..++             .  ...
T Consensus      1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~l--n~k~vyktkv~KktlNPvwNEe~~i~v-------------~--~r~ 1100 (1227)
T COG5038        1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFL--NEKSVYKTKVVKKTLNPVWNEEFTIEV-------------L--NRV 1100 (1227)
T ss_pred             ccCcEEEEEeccCCCcccccCCCCCceEEEEe--cceecccccchhccCCCCccccceEee-------------e--ccc
Confidence            58899999999999999999999999999998  345589999999999999999999885             2  124


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                      ...+.+.++|++...+++.||.+.++|..+..+.....-..|..
T Consensus      1101 ~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038        1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred             cceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccC
Confidence            46889999999999999999999999999877765555444543

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.81  E-value=3.3e-08  Score=94.28  Aligned_cols=96  Identities=29%  Similarity=0.540  Sum_probs=81.7

Q ss_pred             cCCEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         38 NANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~--~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      .-|.+.++|..|++|...+  ..+..|||+.+.+  .+....+|++.+.+.+|.|||+++..+            -.   
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~--~~r~~gkT~v~~nt~nPvwNEt~Yi~l------------ns---  496 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETFYILL------------NS---  496 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEe--ccccCCccceeeccCCccccceEEEEe------------cc---
Confidence            5678999999999999887  5789999999997  344566999999999999999999885            11   


Q ss_pred             CCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645        116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  151 (207)
Q Consensus       116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~  151 (207)
                       ....|.+++||.+....|..+|.++++|..+....
T Consensus       497 -~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~  531 (1227)
T COG5038         497 -FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNP  531 (1227)
T ss_pred             -cCCceeEEEEeccccCCcceeeeEEechHHhhhcc
Confidence             45689999999888899999999999998875443

>KOG1013|consensus

Probab=98.81  E-value=9.1e-09  Score=86.41  Aligned_cols=120  Identities=30%  Similarity=0.418  Sum_probs=100.6

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeecc
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFL  101 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~  101 (207)
                      .+.+...+++.|......+.|.+++|..|...+..+.+|||++..+.|+...  +.+|.+.+.+.+|.|++.|.|.    
T Consensus       217 E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~----  292 (362)
T KOG1013|consen  217 EERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD----  292 (362)
T ss_pred             hhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc----
Confidence            4557789999999999999999999999999999999999999999876654  6788889999999999999998    


Q ss_pred             cccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEE
Q psy17645        102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE  158 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~  158 (207)
                               .+..++....+.+.+||++.....+++|.....+..  .+.-+++|..
T Consensus       293 ---------i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r--r~~v~~h~gr  338 (362)
T KOG1013|consen  293 ---------IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR--RGEVHKHWGR  338 (362)
T ss_pred             ---------CCccchhcceEEEeecccCCCcCccCCCcccccccc--cchhhcCccc
Confidence                     455677889999999999988788999986665443  3444555544

>KOG1265|consensus

Probab=98.73  E-value=1.7e-08  Score=93.77  Aligned_cols=126  Identities=28%  Similarity=0.415  Sum_probs=97.6

Q ss_pred             cCCCCCcceeEeeeecccccCCCCCceeEEEEEC-cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE--CCCC--ceEE
Q psy17645          4 ILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDF-NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL--PDKK--KKFE   78 (207)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~-~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~--~~~~--~~~~   78 (207)
                      +.-||++++|+|||++||...-.++|...-..+- -++.+.|+|+.+.-|.++.    ...||.|.+.  |...  +.++
T Consensus       666 ~FEyNG~sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~r  741 (1189)
T KOG1265|consen  666 MFEYNGGSGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFR  741 (1189)
T ss_pred             heeecCCccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhh
Confidence            3569999999999999999999999965533332 5778999999999887764    5599999883  3322  4678


Q ss_pred             eeeec-CCCCCeEe-cEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645         79 TKVHR-KTLNPVFN-ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  151 (207)
Q Consensus        79 T~~~~-~t~~P~w~-e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~  151 (207)
                      |++.. ++++|.|+ |.|.|.-            +-+.++  ..|.|.||+.+.    .++|+-.+|++.+..|.
T Consensus       742 trt~~~n~~npvy~eepfvF~K------------VvLpeL--A~lRiavyeEgg----K~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  742 TRTVQGNSFNPVYEEEPFVFRK------------VVLPEL--ASLRIAVYEEGG----KFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             hccccCCCCCcccccCCcccce------------ecccch--hheeeeeeccCC----ceeeeeccchhcccCcc
Confidence            88876 78999999 5778853            222333  689999998875    79999999999886653

>KOG1011|consensus

Probab=98.69  E-value=1.3e-07  Score=85.73  Aligned_cols=130  Identities=25%  Similarity=0.328  Sum_probs=104.5

Q ss_pred             cCCCCCc--eeEEEEEC--cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE-C---CCCceEEeeeecCCCCCeEecEE
Q psy17645         23 DLPIFKP--EQTLEYDF--NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-P---DKKKKFETKVHRKTLNPVFNETF   94 (207)
Q Consensus        23 ~~~~~~~--~~~l~y~~--~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~-~---~~~~~~~T~~~~~t~~P~w~e~~   94 (207)
                      ..|+|+.  ++-+.-+|  ..+.++|.|+.|.+|.-.. .|.-.||+.+.+. |   +.++++.|+...++..|.|||+|
T Consensus      1104 edpvgevsvqvdlfthpgtgehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF 1182 (1283)
T KOG1011|consen 1104 EDPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETF 1182 (1283)
T ss_pred             CCCCceEEEEEEeecCCCCCcceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCcee
Confidence            5666765  55566666  4567899999999998764 6788999999874 3   34568999999999999999999


Q ss_pred             EEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645         95 VFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus        95 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      .|-+            .....+....+.+.|-|+...+.|..+|.+.+.|.++.......+|++|...-..
T Consensus      1183 ~f~L------------g~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm 1241 (1283)
T KOG1011|consen 1183 HFFL------------GNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM 1241 (1283)
T ss_pred             EEEe------------ccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccc
Confidence            9985            2223445678889999999888889999999999999888888899999775544

>KOG1328|consensus

Probab=98.68  E-value=3.9e-09  Score=96.26  Aligned_cols=125  Identities=27%  Similarity=0.483  Sum_probs=96.9

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc----------------------------eEEeeeecCCCCCeE
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK----------------------------KFETKVHRKTLNPVF   90 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~----------------------------~~~T~~~~~t~~P~w   90 (207)
                      ..-+.|.+.+|.+|..++.+|++|||+..-+.|...+                            .+-|++++.|++|.|
T Consensus       113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW  192 (1103)
T KOG1328|consen  113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW  192 (1103)
T ss_pred             cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence            4446677788999999999999999998876442110                            245788889999999


Q ss_pred             ecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC---------------------------------CC---C
Q psy17645         91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF---------------------------------SK---H  134 (207)
Q Consensus        91 ~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~---------------------------------~~---~  134 (207)
                      +|.|.|.+               +++....+.+.+||++--                                 +.   |
T Consensus       193 ~EkF~F~I---------------eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD  257 (1103)
T KOG1328|consen  193 SEKFQFTI---------------EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD  257 (1103)
T ss_pred             hhheeeeh---------------hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence            99999996               677888999999998621                                 12   7


Q ss_pred             ceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceee
Q psy17645        135 DQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKAL  186 (207)
Q Consensus       135 ~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~  186 (207)
                      +|+|...+||.++.. .+.++||.|++++..       +...|.+++.+.++
T Consensus       258 DFLGciNipl~EiP~-~Gld~WFkLepRS~~-------S~VqG~~~LklwLs  301 (1103)
T KOG1328|consen  258 DFLGCINIPLAEIPP-DGLDQWFKLEPRSDK-------SKVQGQVKLKLWLS  301 (1103)
T ss_pred             ccccccccchhcCCc-chHHHHhccCccccc-------ccccceEEEEEEEe
Confidence            899999999999954 578999999987665       34557777754544

>KOG1031|consensus

Probab=98.53  E-value=4.1e-07  Score=81.70  Aligned_cols=123  Identities=28%  Similarity=0.489  Sum_probs=97.6

Q ss_pred             CEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEe-cEEEEeeecccccceeccCcccCcCC
Q psy17645         40 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN-ETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~-e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      +.|-|.|..||+|+-++.. ...|.||.+.+   ....++|.+-.++++|.|| +.|.|.             +.-.++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~---~n~t~ktdvf~kslnp~wnsdwfkfe-------------vddadlq   66 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF---ANTTFKTDVFLKSLNPQWNSDWFKFE-------------VDDADLQ   66 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEe---cccceehhhhhhhcCCcccccceEEe-------------cChhhhc
Confidence            5788999999999988754 56899999998   5678999999999999999 788998             5556778


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccc----------cccceEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA----------QTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALY  187 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~----------~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~  187 (207)
                      ...+.+.+.|++..+-++-||.+.++++-+...          .-+..|+++.+.-.         +-.|||.|-+++-.
T Consensus        67 deplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih---------girgeinvivkvdl  137 (1169)
T KOG1031|consen   67 DEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH---------GIRGEINVIVKVDL  137 (1169)
T ss_pred             cCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc---------cccceeEEEEEEee
Confidence            899999999999999999999999998865322          23458999986433         33466665445443

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.50  E-value=1.7e-07  Score=64.69  Aligned_cols=102  Identities=25%  Similarity=0.403  Sum_probs=77.7

Q ss_pred             EEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         42 LSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      +++++++|++|.-...- .....|++--+--.+...++|+..+...+|.|.|+|.|.             +....+..-.
T Consensus         1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-------------i~l~qL~~V~   67 (103)
T cd08684           1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-------------IKLQNLQTVR   67 (103)
T ss_pred             CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-------------HHHhhccceE
Confidence            36889999998765433 335567776553234468899999999999999999998             4556677788


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                      |.|.|+.  ...+.+.+|.|.+.|.++. .+..++|.++
T Consensus        68 L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~  103 (103)
T cd08684          68 LVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLEI  103 (103)
T ss_pred             EEEEeec--cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence            9999988  4567789999999999873 3567788653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.44  E-value=1.1e-06  Score=62.96  Aligned_cols=85  Identities=21%  Similarity=0.344  Sum_probs=67.6

Q ss_pred             EEEEEEEeeCCCCCC---CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         42 LSVTVIQAEDLPALD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        42 L~V~I~~a~nL~~~~---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      |.|+|..++++....   ..+.+++|+.+.+  ++..+.+|+..   .+|.|+|.|.|++                + ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~kaRTr~s---rnd~WnE~F~i~V----------------d-k~   58 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVERARTKPS---RNDRWNEDFEIPV----------------E-KN   58 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEEEEeccCC---CCCcccceEEEEe----------------c-CC
Confidence            578899999998777   5688999999999  45567788774   7899999999984                2 45


Q ss_pred             ceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645        119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  149 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~  149 (207)
                      ..+.+.|||... ...--+|...+.++++..
T Consensus        59 nEiel~VyDk~~-~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          59 NEEEVIVYDKGG-DQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             cEEEEEEEeCCC-CeecceeeehhhHHHHHH
Confidence            799999999865 334568999999888643

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02352 phospholipase D epsilon

Probab=98.40  E-value=3.4e-06  Score=78.81  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=75.6

Q ss_pred             CCEEEEEEEEeeCCCCCC----C-CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645         39 ANSLSVTVIQAEDLPALD----M-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY  113 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~----~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~  113 (207)
                      .+.|.++|++|+-+...-    . ....+||+.+.+  .+.+..+|   .+..+|.|+|.|.+.+            -..
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~~------------ah~   71 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQILC------------AHP   71 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEEe------------eee
Confidence            578999999997332211    0 112399999999  46677788   4455999999999886            221


Q ss_pred             CcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccc-cceEEEccccCCC
Q psy17645        114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-IEEWRELQSVEGE  165 (207)
Q Consensus       114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-~~~w~~L~~~~~~  165 (207)
                         ....+.|.|.|     ...+||.+.+|..++..+.. ++.|+++....++
T Consensus        72 ---~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~  116 (758)
T PLN02352         72 ---LDSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK  116 (758)
T ss_pred             ---cCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC
Confidence               22478899987     24799999999999988866 8999999886655

>KOG2060|consensus

Probab=98.39  E-value=2.4e-07  Score=79.19  Aligned_cols=122  Identities=26%  Similarity=0.417  Sum_probs=98.4

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ++++++.+.-  ..+.+.|.|++|++|...... ..+.||++|++++.+.  .+.+|+...++.+|.+.+...|.     
T Consensus       257 mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-----  329 (405)
T KOG2060|consen  257 MGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-----  329 (405)
T ss_pred             cccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-----
Confidence            3556655543  578999999999999876543 3689999999986543  37789999999999998888887     


Q ss_pred             ccceeccCcccCcCCCceEEEEEE-ecCCCCCCceeEEEEEeceeecccc-ccceEEEccccCCC
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQSVEGE  165 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~-d~~~~~~~~~lG~~~v~L~~l~~~~-~~~~w~~L~~~~~~  165 (207)
                                 +.+..+.|.+.+| |+.++.++.|+|.+++-+.++.... ....||+|++....
T Consensus       330 -----------~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl  383 (405)
T KOG2060|consen  330 -----------QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL  383 (405)
T ss_pred             -----------cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence                       2336689999999 5788888999999999999998775 88899999976554

>KOG1013|consensus

Probab=98.34  E-value=6.8e-08  Score=81.26  Aligned_cols=112  Identities=33%  Similarity=0.461  Sum_probs=96.0

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      +...+.+.|+..+..+.++|.+|..|.+++..+..|||+...++|...  .+.+|++..++.||.|+|+..+..      
T Consensus        80 g~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~------  153 (362)
T KOG1013|consen   80 GALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEG------  153 (362)
T ss_pred             cchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecc------
Confidence            556788899999999999999999999999999999999999987544  478999999999999999887763      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  150 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~  150 (207)
                            +..++...+.+.+.+++.+.+.+++++|+..+++..+...
T Consensus       154 ------i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~  193 (362)
T KOG1013|consen  154 ------ITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPL  193 (362)
T ss_pred             ------cccchhhhhhhheeeccCcccccccCcccchhhhhccChh
Confidence                  4445556678889999999999999999999888777544

>KOG1326|consensus

Probab=98.27  E-value=4e-07  Score=85.71  Aligned_cols=127  Identities=23%  Similarity=0.227  Sum_probs=98.4

Q ss_pred             CCceeEEEEEC-cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEee-eccccc
Q psy17645         27 FKPEQTLEYDF-NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV-SFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~-~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~-~~~~~~  104 (207)
                      -.|.+++.++. ....+++.|.+|++|...+..+.+|||+.+.+   .++.+.|.++..|++|.|+++..|.- .+....
T Consensus       192 ~~p~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f---~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~  268 (1105)
T KOG1326|consen  192 SVPEFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEF---CGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEA  268 (1105)
T ss_pred             ccCceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhc---ccccceeEeecCcCCCCccceeeccceeecCcc
Confidence            34788888877 77789999999999999999999999999987   57899999999999999999998852 111111


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                             ..-......+.++++|.++.+.++|+|+......-+ ...+...|+++.+...
T Consensus       269 -------~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~-~~~p~lkw~p~~rg~~  320 (1105)
T KOG1326|consen  269 -------HLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVM-VQCPALKWVPTMRGAF  320 (1105)
T ss_pred             -------chhhcCCCeEEEEeehhhhhchHHhhcccccceEEE-ecCCccceEEeecccc
Confidence                   111113468899999999999999999866654433 3367778999886443

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.14  E-value=3e-06  Score=62.72  Aligned_cols=97  Identities=19%  Similarity=0.307  Sum_probs=68.5

Q ss_pred             CCcEEEEEEEC-CCCceEEeeeecCCCCCeEecEEEEeeecc-cccceeccCccc-CcCCCceEEEEEEecCCC------
Q psy17645         61 SDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKVSFL-NRSEVFEQGVPY-ADAMNKTLVFAIFDFDRF------  131 (207)
Q Consensus        61 ~dpyv~v~l~~-~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~~~~~~~~~~-~~~~~~~l~i~v~d~~~~------  131 (207)
                      .++|+.+.+.. .+....+|+++.+++.|.|+..+.|+++.+ .+.+ =+ ...+ +.+....+.++||+...-      
T Consensus        33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~-Ge-~~sLAElLe~~eiil~vwHr~~~s~~~~~  110 (143)
T cd08683          33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS-GE-AISLAELLESAEIILEVWHRNPKSAGDTI  110 (143)
T ss_pred             cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCC-Cc-cccHHHHhhcceEEeeeeecCCcccccee
Confidence            58999998643 345678999999999999999999987421 1111 00 0111 234668999999986532      


Q ss_pred             ----CCCceeEEEEEeceeeccc-cccceEEEc
Q psy17645        132 ----SKHDQIGEVKVALCQIDLA-QTIEEWREL  159 (207)
Q Consensus       132 ----~~~~~lG~~~v~L~~l~~~-~~~~~w~~L  159 (207)
                          .+|-.+|.+.+|+.++... .++..||++
T Consensus       111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683         111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                2445899999999997544 577899875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1326|consensus

Probab=98.06  E-value=4.1e-06  Score=79.10  Aligned_cols=92  Identities=33%  Similarity=0.491  Sum_probs=78.1

Q ss_pred             CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         37 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      +....++|++++|.+|.+.+..|.+|||+.+.+   +++  .-+...+.++++|+|++.|.+.++           +|  
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~l---Gk~~~~d~~~yip~tlnPVfgkmfel~~~-----------lp--  673 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLL---GKKRTLDRAHYIPNTLNPVFGKMFELECL-----------LP--  673 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeee---ccchhhhhhhcCcCCCCcHHHHHHHhhcc-----------cc--
Confidence            456678899999999999999999999999998   333  356677889999999999988751           44  


Q ss_pred             cCCCceEEEEEEecCCCCCCceeEEEEEecee
Q psy17645        115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ  146 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~  146 (207)
                        ....+.+.|||++..+.|+.+|+..++|.+
T Consensus       674 --~ek~l~v~vyd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  674 --FEKDLIVEVYDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             --hhhcceeEEEEeecccccchhhceehhhhh
Confidence              446889999999999999999999999876

>KOG3837|consensus

Probab=97.95  E-value=2.5e-06  Score=73.93  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=104.0

Q ss_pred             eEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC--CCCceEEeeeecCCCCCeEecEEEEeeec---ccccc
Q psy17645         31 QTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKVSF---LNRSE  105 (207)
Q Consensus        31 ~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~~P~w~e~~~f~~~~---~~~~~  105 (207)
                      +.+.-+.....|.+.|+++++++........|-|+++.+.-  +..++.+|.+++.+.+|.|+|.|-+.++.   .++..
T Consensus       358 v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~f  437 (523)
T KOG3837|consen  358 VAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREF  437 (523)
T ss_pred             hhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHH
Confidence            33444556778889999999888765444567899988742  23467899999999999999999988632   12211


Q ss_pred             eeccCcccCcCCCceEEEEEEecCCC-CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645        106 VFEQGVPYADAMNKTLVFAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK  184 (207)
Q Consensus       106 ~~~~~~~~~~~~~~~l~i~v~d~~~~-~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~  184 (207)
                        +     .......+.|++|+.+.+ .+|.++|.+.+.|.-|......+..++|.+..+.+++++       ++.|+++
T Consensus       438 --q-----R~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkL-------evKvRiR  503 (523)
T KOG3837|consen  438 --Q-----RRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKL-------EVKVRIR  503 (523)
T ss_pred             --H-----HHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCee-------EEEEEEe
Confidence              0     011357889999998654 667899999999999888888889999999888888877       6666443

>PLN02964 phosphatidylserine decarboxylase

Probab=97.32  E-value=0.00049  Score=63.96  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=80.8

Q ss_pred             eEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccC
Q psy17645         31 QTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQG  110 (207)
Q Consensus        31 ~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~  110 (207)
                      -.+..+.=.+...++++.|+       ....|+|..+..  .+.+.++|.+.+.|.+|+||+...|.+            
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~g~~~f~t~~~~~~~~p~~~~~~~~~~------------  103 (644)
T PLN02964         45 RAVSAEDFSGIALLTLVGAE-------MKFKDKWLACVS--FGEQTFRTETSDSTDKPVWNSEKKLLL------------  103 (644)
T ss_pred             cceecccccCeEEEEeehhh-------hccCCcEEEEEE--ecceeeeeccccccCCcccchhhceEe------------
Confidence            34555666788899998886       234688766654  377899999999999999999888874            


Q ss_pred             cccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccc--eEEEccccCC
Q psy17645        111 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE--EWRELQSVEG  164 (207)
Q Consensus       111 ~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~--~w~~L~~~~~  164 (207)
                      .+ .+  .....+.||+.++++.++++|.+.++|.++...+..+  .-|.+.++.+
T Consensus       104 ~~-~~--~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg  156 (644)
T PLN02964        104 EK-NG--PHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS  156 (644)
T ss_pred             cc-CC--cceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence            22 22  2456999999999999999999999988875553322  2245555444

>KOG1327|consensus

Probab=97.28  E-value=0.0015  Score=58.93  Aligned_cols=114  Identities=25%  Similarity=0.380  Sum_probs=80.5

Q ss_pred             CCCCCceeEEEEEC--cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEee
Q psy17645         24 LPIFKPEQTLEYDF--NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKV   98 (207)
Q Consensus        24 ~~~~~~~~~l~y~~--~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~   98 (207)
                      .+.+...+.+..+-  +......-..+|++|...+..+.+|||..+.-..+..   ..++|.+++++++|.|.+ |.+..
T Consensus       118 ~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~  196 (529)
T KOG1327|consen  118 KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISL  196 (529)
T ss_pred             ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccch
Confidence            44444444444443  3445555667789999999999999999886532222   367999999999999954 43332


Q ss_pred             ecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645         99 SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  149 (207)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~  149 (207)
                      .-+|.          .+ ....+.+.+||++..+.++++|++..++..+..
T Consensus       197 ~~l~~----------~~-~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  197 QSLCS----------KD-GNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             hhhcc----------cC-CCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            11111          11 357888999999998888999999999988754

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.96  E-value=0.044  Score=42.32  Aligned_cols=92  Identities=14%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      ..++|+|..+.++...   ...+.|+.+.+..++..   ...|+.+.. .++.|||.+.|++            --.+-.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI------------~i~dLP   71 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDI------------YIPDLP   71 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEccc------------chhcCC
Confidence            3688999999988764   34688999887533221   223444443 5799999999985            111222


Q ss_pred             CCceEEEEEEecCCCC----CCceeEEEEEeceee
Q psy17645        117 MNKTLVFAIFDFDRFS----KHDQIGEVKVALCQI  147 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~----~~~~lG~~~v~L~~l  147 (207)
                      ....|+|.+|+.....    ....+|.+.++|-+.
T Consensus        72 r~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          72 RSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             hhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence            5679999999875321    224699999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.49  E-value=0.048  Score=47.22  Aligned_cols=107  Identities=18%  Similarity=0.313  Sum_probs=78.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL  121 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l  121 (207)
                      +.+.|.+|+|.+..   ..-...+...+   ++....|..+..+.+|.|+..+...+   +|..     +..-......|
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~---ng~~l~TDpv~~~~~p~f~teL~WE~---Dr~~-----l~~~r~~~tPi   67 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKF---NGESLETDPVPHTESPQFNTELAWEC---DRKA-----LKQHRLQRTPI   67 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEe---CCceeeecCCCCCCCceeecceeeec---cHHH-----HHHhhccCCce
Confidence            67899999998865   23455666776   56788899899999999998887763   1111     11122356889


Q ss_pred             EEEEEecC-CCCCCceeEEEEEeceee---ccc--cccceEEEcccc
Q psy17645        122 VFAIFDFD-RFSKHDQIGEVKVALCQI---DLA--QTIEEWRELQSV  162 (207)
Q Consensus       122 ~i~v~d~~-~~~~~~~lG~~~v~L~~l---~~~--~~~~~w~~L~~~  162 (207)
                      .+++|..+ .....+.+|.+.++|...   ..+  .....||.|..-
T Consensus        68 Kl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   68 KLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             EEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            99999887 446668999999999887   444  345589999875

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.35  E-value=0.045  Score=42.87  Aligned_cols=94  Identities=22%  Similarity=0.271  Sum_probs=63.4

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      ..++|+|..+.++..  .....+.|+.+.+...+.   ....|+.+.....+.|+|.+.|++            .-..-.
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I------------~i~dLP   73 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDI------------NVCDLP   73 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEccc------------chhcCC
Confidence            368899999999876  234577788887653222   134555555556799999999985            111222


Q ss_pred             CCceEEEEEEecCCCC----------------CCceeEEEEEeceee
Q psy17645        117 MNKTLVFAIFDFDRFS----------------KHDQIGEVKVALCQI  147 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~----------------~~~~lG~~~v~L~~l  147 (207)
                      ....|+|.+|+.....                ....+|.+.++|-+.
T Consensus        74 r~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          74 RMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             hhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            5678999999865322                135799988888764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.06  E-value=0.07  Score=40.79  Aligned_cols=95  Identities=19%  Similarity=0.192  Sum_probs=61.9

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      ..++|++....++... .....+.|+.+.+...+.   ....|.......++.|+|.+.|++.            -..-.
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~------------~~~LP   74 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDIL------------ISDLP   74 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccch------------hhcCC
Confidence            3567777777776542 134567888887753332   1334444444467999999999851            11222


Q ss_pred             CCceEEEEEEecCCCC--CCceeEEEEEeceee
Q psy17645        117 MNKTLVFAIFDFDRFS--KHDQIGEVKVALCQI  147 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~--~~~~lG~~~v~L~~l  147 (207)
                      ....|+|.+|+.....  .+..+|.+.++|-+.
T Consensus        75 ~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          75 REARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             hhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            4678999999976543  456899999998774

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.03  E-value=0.041  Score=42.49  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             CCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCC
Q psy17645         58 GGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH  134 (207)
Q Consensus        58 ~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~  134 (207)
                      ...++.|+.+.+..++.   ....|..+..+..+.|||.+.|++.            -.+-.....|+|.||+....++.
T Consensus        27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~------------i~dLP~~a~L~iti~~~~~~~~~   94 (159)
T cd08397          27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIK------------YSDLPRNSQLAITIWDVSGTGKA   94 (159)
T ss_pred             CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccc------------hhcCChhheEEEEEEEecCCCCc
Confidence            45678899988753332   1335556666677899999999851            11222467999999998765566


Q ss_pred             ceeEEEEEeceee
Q psy17645        135 DQIGEVKVALCQI  147 (207)
Q Consensus       135 ~~lG~~~v~L~~l  147 (207)
                      ..+|.+.++|-+.
T Consensus        95 ~~vg~~~~~lFd~  107 (159)
T cd08397          95 VPFGGTTLSLFNK  107 (159)
T ss_pred             eEEEEEEEeeECC
Confidence            7899999998764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.64  E-value=0.63  Score=34.66  Aligned_cols=110  Identities=23%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      ..++.+.|.+..+++.      .+..+.+.+...+..  ...|.... ....-.|++.|.+.+.+.-...       ...
T Consensus         6 kf~~~l~i~~l~~~p~------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k-------~~~   72 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKK-------SKE   72 (143)
T ss_pred             eEEEEEEEEEeECcCC------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCC-------CCc
Confidence            3457788888888775      233334433212222  34444433 4567899999999875333221       011


Q ss_pred             CCCceEEEEEEecCCCCCCceeEEEEEeceeeccc--cccceEEEccc
Q psy17645        116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS  161 (207)
Q Consensus       116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~--~~~~~w~~L~~  161 (207)
                      .....+.|.|+.....++...+|.+.++|++....  .....-+.|..
T Consensus        73 ~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~  120 (143)
T PF10358_consen   73 FQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK  120 (143)
T ss_pred             EeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc
Confidence            35578899999875333336899999999998764  33444555544

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.62  E-value=0.17  Score=38.98  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=69.0

Q ss_pred             CcCCEEEEEEEEeeCCCCCCCC--CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccce--eccCcc
Q psy17645         37 FNANSLSVTVIQAEDLPALDMG--GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEV--FEQGVP  112 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~~~--g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~--~~~~~~  112 (207)
                      +....|.+.|..++.....-..  +..+..+.+.+. -..++++|+.+..+.+|.|+|.|.|++....-...  ...-+ 
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll-   83 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL-   83 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhh-
Confidence            3466788999988865543321  455555666553 35689999999999999999999998521110000  00000 


Q ss_pred             cCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645        113 YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  149 (207)
Q Consensus       113 ~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~  149 (207)
                        . ....+.+.+-..+..+...++|.-.++...+..
T Consensus        84 --s-~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~  117 (156)
T PF15627_consen   84 --S-ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC  117 (156)
T ss_pred             --c-CCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence              0 235677777777766666788887777666533

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.28  E-value=0.14  Score=39.90  Aligned_cols=97  Identities=20%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeec----CCCCCeEecEEEEeeecccccceeccCc
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHR----KTLNPVFNETFVFKVSFLNRSEVFEQGV  111 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~----~t~~P~w~e~~~f~~~~~~~~~~~~~~~  111 (207)
                      ...+.|+|..+.+++..-.....+.|+.+.+...+..   ...|+...    ....+.|||.+.|++            .
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i------------~   74 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPI------------P   74 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECcc------------c
Confidence            3467888999999887654556889999987533221   22343221    233577999999985            1


Q ss_pred             ccCcCCCceEEEEEEecCCCC---------CCceeEEEEEeceee
Q psy17645        112 PYADAMNKTLVFAIFDFDRFS---------KHDQIGEVKVALCQI  147 (207)
Q Consensus       112 ~~~~~~~~~l~i~v~d~~~~~---------~~~~lG~~~v~L~~l  147 (207)
                      -..-.....|+|.+|+.....         .+..+|-+.++|-+.
T Consensus        75 i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          75 VCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             hhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            112225679999999876543         346899999998774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.15  E-value=1  Score=35.74  Aligned_cols=59  Identities=19%  Similarity=0.227  Sum_probs=46.4

Q ss_pred             ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCC-C-CceeEEEEEecee
Q psy17645         75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFS-K-HDQIGEVKVALCQ  146 (207)
Q Consensus        75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~-~-~~~lG~~~v~L~~  146 (207)
                      ..++|-+...+.+|.|+|++.+.             +|.+......|.|++++...-. . ...+|-+.+||.+
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~-------------lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLP-------------IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEe-------------cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            35788888888899999999998             7878778899999998754321 1 2569999999864

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.50  E-value=0.75  Score=34.52  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             EeeeecCC-CCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCC----ceeEEEEEeceee
Q psy17645         78 ETKVHRKT-LNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH----DQIGEVKVALCQI  147 (207)
Q Consensus        78 ~T~~~~~t-~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~----~~lG~~~v~L~~l  147 (207)
                      .|.....+ ..+.|+|.+.|++            .-..-.....|+|.||........    ..||-+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i------------~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPI------------PISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEE------------EGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeec------------ChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56655555 7999999999985            111223567899999998765544    6899999998775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.48  E-value=2.7  Score=33.09  Aligned_cols=76  Identities=11%  Similarity=0.036  Sum_probs=47.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      .++|+|..+.++.. +.......||.+.+...+.  ...+|.....+.++.|||.+.|++            .-.+-...
T Consensus        11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I------------~~~dLP~~   77 (178)
T cd08399          11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDI------------KIKDLPKG   77 (178)
T ss_pred             CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECcc------------ccccCChh
Confidence            67788887764332 2233345777776643221  123566666667799999999985            11122356


Q ss_pred             ceEEEEEEecC
Q psy17645        119 KTLVFAIFDFD  129 (207)
Q Consensus       119 ~~l~i~v~d~~  129 (207)
                      ..|+|.||+..
T Consensus        78 arLc~ti~~~~   88 (178)
T cd08399          78 ALLNLQIYCGK   88 (178)
T ss_pred             hEEEEEEEEEe
Confidence            79999999864

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=93.42  E-value=1.7  Score=34.67  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=45.3

Q ss_pred             ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC----CCCceeEEEEEece
Q psy17645         75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALC  145 (207)
Q Consensus        75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~----~~~~~lG~~~v~L~  145 (207)
                      ..++|-+.....+|.|+|++.+.             +|.+......|.|++++...-    .....+|-+.+||.
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~-------------lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVA-------------IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEe-------------cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            36778787778899999999998             787887889999999875421    11246899999986

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=92.82  E-value=0.87  Score=35.74  Aligned_cols=59  Identities=19%  Similarity=0.297  Sum_probs=37.7

Q ss_pred             ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCC-C--CceeEEEEEecee
Q psy17645         75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFS-K--HDQIGEVKVALCQ  146 (207)
Q Consensus        75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~-~--~~~lG~~~v~L~~  146 (207)
                      ..+.|.+...+..|.|+|++.+.             +|........|.|++++...-. .  ...+|-+.+||.+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~-------------LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQ-------------LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEE-------------E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEE-------------cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            35677777788899999999998             6777767889999999865322 1  1689999999987

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=92.67  E-value=1.1  Score=31.63  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=48.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeecCCCCCeEecEEEEeeecccccceeccCccc-CcCC
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY-ADAM  117 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~-~~~~  117 (207)
                      +.+.+....++.........+.|+.+.+..++..   ...|+.+.....+.|||...|++             .. +-..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i-------------~i~~LPr   79 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPI-------------QISDLPR   79 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccC-------------chhcCCh
Confidence            5566666666655443333588999987533321   23555555566789999999985             22 2224


Q ss_pred             CceEEEEEEecCC
Q psy17645        118 NKTLVFAIFDFDR  130 (207)
Q Consensus       118 ~~~l~i~v~d~~~  130 (207)
                      ...|+|.+|+...
T Consensus        80 ~a~L~~~i~~~~~   92 (100)
T smart00142       80 EARLCITIYEVKN   92 (100)
T ss_pred             hhEEEEEEEEeeC
Confidence            6789999998653

Outlier of C2 family.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=88.53  E-value=2.3  Score=33.25  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=41.5

Q ss_pred             EeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC-----CCCceeEEEEEecee
Q psy17645         78 ETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF-----SKHDQIGEVKVALCQ  146 (207)
Q Consensus        78 ~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~-----~~~~~lG~~~v~L~~  146 (207)
                      -+.++.....|.|++++.+.             +|........|.|++++...-     .....+|-+.+||.+
T Consensus        55 ~~sv~~~~k~p~f~deiKi~-------------LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYHKNPVFNDEIKIQ-------------LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcCCCCCCceeEEEe-------------cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            33444433899999999998             676655788999999986522     234689999999886

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=84.66  E-value=3.9  Score=28.72  Aligned_cols=64  Identities=17%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             CCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEE
Q psy17645         60 TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGE  139 (207)
Q Consensus        60 ~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~  139 (207)
                      ..+..+.+.+  ++.....|.-... .+..|++.|.+++             .    .+.++.|.|+-.|-   ..+.|-
T Consensus         8 ~~eV~avLkl--Dn~~VgqT~Wk~~-s~q~WDQ~Fti~L-------------d----RsRELEI~VywrD~---RslCav   64 (98)
T cd08687           8 CSEVSAVLKL--DNTVVGQTQWKPK-SNQAWDQSFTLEL-------------E----RSRELEIAVYWRDW---RSLCAV   64 (98)
T ss_pred             ccceEEEEEE--cCeEEeecccccc-ccccccceeEEEe-------------e----cccEEEEEEEEecc---hhhhhh
Confidence            4566677776  4556667766655 4789999999984             2    56799999987763   257788


Q ss_pred             EEEecee
Q psy17645        140 VKVALCQ  146 (207)
Q Consensus       140 ~~v~L~~  146 (207)
                      ..+.|.+
T Consensus        65 ~~lrLEd   71 (98)
T cd08687          65 KFLKLED   71 (98)
T ss_pred             eeeEhhh
Confidence            8888877

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=84.49  E-value=5.7  Score=31.47  Aligned_cols=59  Identities=15%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecC--CCC-------CCceeEEEEEece
Q psy17645         75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFD--RFS-------KHDQIGEVKVALC  145 (207)
Q Consensus        75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~--~~~-------~~~~lG~~~v~L~  145 (207)
                      ....|.+.-.+.+|.|.|++-+.             +|...-....|.|++++..  ...       ....+|-+.+||.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~-------------LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl  122 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIE-------------LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL  122 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEe-------------cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence            35677777788999999999888             7776667889999999864  111       1246899999987


Q ss_pred             e
Q psy17645        146 Q  146 (207)
Q Consensus       146 ~  146 (207)
                      .
T Consensus       123 ~  123 (185)
T cd08697         123 K  123 (185)
T ss_pred             c
Confidence            5

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=83.93  E-value=2.7  Score=30.25  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             CCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc-
Q psy17645         73 KKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-  151 (207)
Q Consensus        73 ~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~-  151 (207)
                      ....+.|.++. ..+|.++-+..|.+..+.        +-...+....+.++++.... ...+.+|.+++++..+.... 
T Consensus         9 dfEtq~Tpvv~-G~~p~y~fts~y~V~~d~--------~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~   78 (107)
T PF11618_consen    9 DFETQTTPVVR-GLNPFYDFTSQYKVTMDD--------LFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG   78 (107)
T ss_dssp             T---EE---EE-SSS----EEEEEEE--SH--------HHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S
T ss_pred             ceeeeccccee-CCCccceeEEEEEEEcCH--------HHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC
Confidence            45677787777 579999988888741000        00112356789999998763 34679999999999875433 


Q ss_pred             -ccceEEEccccCCCCceEEeecCCCCceeeecee
Q psy17645        152 -TIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKA  185 (207)
Q Consensus       152 -~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~  185 (207)
                       ....-..|.+..++         .-|.+.+.+++
T Consensus        79 ~~i~~~~~l~g~~~~---------~~g~l~y~~rl  104 (107)
T PF11618_consen   79 ERIHGSATLVGVSGE---------DFGTLEYWIRL  104 (107)
T ss_dssp             --EEEEEEE-BSSS----------TSEEEEEEEEE
T ss_pred             ceEEEEEEEeccCCC---------eEEEEEEEEEe
Confidence             24445555544433         23556655554

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=83.83  E-value=5.8  Score=31.25  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=44.5

Q ss_pred             ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCC------CCceeEEEEEecee
Q psy17645         75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFS------KHDQIGEVKVALCQ  146 (207)
Q Consensus        75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~------~~~~lG~~~v~L~~  146 (207)
                      ....|.+...+.+|.|.|.+-+.             +|...-....|.|++++..--.      ....+|-+.+||-.
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~-------------LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIK-------------LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEE-------------cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            35677777888999999999888             7776667789999999843211      12468988888864

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		6e-44
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		2e-43
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-43
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		9e-43
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		1e-42
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		3e-29
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-28
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-28
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		2e-21
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		2e-21
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		8e-15
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		9e-15
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		2e-14
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		4e-14
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		5e-14
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		8e-14
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		1e-13
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		5e-13
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		2e-12
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-12
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		1e-11
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		3e-11
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		9e-11
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		1e-10
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		2e-10
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		2e-10
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		4e-10
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		6e-10
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		7e-10
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		2e-09
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-09
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		4e-09
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		5e-08
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		6e-07
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		2e-05
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		4e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		2e-04
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		5e-04
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		6e-04

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 13/138 (9%)
Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 7   KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 67  PVFNEQFTFK-------------VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113
Query: 148 DLAQTIEEWRELQSVEGE 165
           D     EEWR+LQS E E
Sbjct: 114 DFGHVTEEWRDLQSAEKE 131

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 13/136 (9%)
Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 30  KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 90  PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
Query: 148 DLAQTIEEWRELQSVE 163
           D     EEWR+LQS E
Sbjct: 137 DFGHVTEEWRDLQSAE 152

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 13/136 (9%)
Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 5   KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 65  PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 111
Query: 148 DLAQTIEEWRELQSVE 163
           D     EEWR+LQS E
Sbjct: 112 DFGHVTEEWRDLQSAE 127

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 97/135 (71%), Gaps = 13/135 (9%)
Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 22  KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 82  PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Query: 148 DLAQTIEEWRELQSV 162
           D     EEWR+LQS 
Sbjct: 129 DFGHVTEEWRDLQSA 143

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 97/135 (71%), Gaps = 13/135 (9%)
Query: 28  KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
           K + +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 22  KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PVFNE F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +
Sbjct: 82  PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Query: 148 DLAQTIEEWRELQSV 162
           D     EEWR+LQS 
Sbjct: 129 DFGHVTEEWRDLQSA 143

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 12/136 (8%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           ++ Y+F  ++L+V +++A++LPA D  GTSDP+VK+YLLPDKK K ETKV RK LNP +N
Sbjct: 18  SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF+F            +G PY   + + L   + D+DRFS++D IGEV + L ++DL Q
Sbjct: 78  ETFLF------------EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ 125
Query: 152 TIEEWRELQSVEGEGG 167
               W++L+      G
Sbjct: 126 MQTFWKDLKPSGPSSG 141

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 28/166 (16%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
            L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 12  ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF F              VP A+   + L F+++DFDRFS+HD IG+V V    ++LA+
Sbjct: 72  ETFQF-------------SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAE 117
Query: 152 TIEE---WRELQSVEGEGGQVYYLDGPKGNLATGKKAL-YLPNVGV 193
              +   WR++     EGG        K +L     +L YLP  G+
Sbjct: 118 QPPDRPLWRDIL----EGGS------EKADLGELNFSLCYLPTAGL 153

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 28/166 (16%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
            L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 13  ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 72
Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF F              VP A+   + L F+++DFDRFS+HD IG+V V    ++LA+
Sbjct: 73  ETFQF-------------SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAE 118
Query: 152 TIEE---WRELQSVEGEGGQVYYLDGPKGNLATGKKAL-YLPNVGV 193
              +   WR++     EGG        K +L     +L YLP  G+
Sbjct: 119 QPPDRPLWRDIL----EGGS------EKADLGELNFSLCYLPTAGL 154

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 20/135 (14%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPA-LDMGGT------SDPYVKVYLLPDKKKKFETKVHRK 84
           + +YD   N L+V VI+A DLP  +   G+      S+PYVK+ LLPD+K   +T V RK
Sbjct: 18  STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 85  TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
           T  PVF E + F++ FL             +A  +TL+  + DFD+FS+H  IG+V V L
Sbjct: 78  TQKPVFEERYTFEIPFL-------------EAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
Query: 145 CQIDLAQTIEEWREL 159
           C++DL +    W+ L
Sbjct: 125 CEVDLVKGGHWWKAL 139

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 13/121 (10%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
           +LEY+F   +  V + +A  LPA+D    TSDPY+K+ +LP+KK K +T+V RKTL+P F
Sbjct: 14  SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           +ETF F             G+PY       L F I  FDRFS+ D IGEV + L  I+L+
Sbjct: 74  DETFTF------------YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 151 Q 151
           +
Sbjct: 122 E 122

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 30  EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLN 87
           E +L YD + ++L  T+I+A+ L  +D  G +DPYVK++LLP   K  K  TK  R T N
Sbjct: 19  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PV+NET  +             G+   D   KTL  ++ D D+F  ++ IGE + +L ++
Sbjct: 79  PVWNETLQY------------HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
Query: 148 DLAQ 151
              Q
Sbjct: 127 KANQ 130

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 30  EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLN 87
           E +L YD + ++L  T+I+A+ L  +D  G +DPYVK++LLP   K  K  TK  R T N
Sbjct: 17  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 88  PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           PV+NET  +             G+   D   KTL  ++ D D+F  ++ IGE + +L ++
Sbjct: 77  PVWNETLQY------------HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
Query: 148 DLAQ 151
              Q
Sbjct: 125 KANQ 128

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+   K+  K +T   ++ LNP+
Sbjct: 8   SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI 67
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE+F F              +P       T++  + D D+ S++D IG  K+ L     
Sbjct: 68  FNESFAF-------------DIPTEKLRETTIIITVMDKDKLSRNDVIG--KIYLSWKSG 112
Query: 150 AQTIEEWREL 159
              ++ W+++
Sbjct: 113 PGEVKHWKDM 122

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 27/144 (18%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
           +L Y      L V +I+   L A+D  G SDP+VK++L PD  KK K +T++ +KTLNP 
Sbjct: 7   SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL----- 144
           FNE F + +              ++D   K+L  +++D+D    +D IG  ++ +     
Sbjct: 67  FNEEFFYDIK-------------HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 113
Query: 145 -------CQIDLAQTIEEWRELQS 161
                  C  +  + IE W +LQ+
Sbjct: 114 RLKHWYECLKNKDKKIERWHQLQN 137

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 27/144 (18%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
           +L Y      L V +I+   L A+D  G SDP+VK++L PD  KK K +T++ +KTLNP 
Sbjct: 29  SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL----- 144
           FNE F +              + ++D   K+L  +++D+D    +D IG  ++ +     
Sbjct: 89  FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135
Query: 145 -------CQIDLAQTIEEWRELQS 161
                  C  +  + IE W +LQ+
Sbjct: 136 RLKHWYECLKNKDKKIERWHQLQN 159

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 27/144 (18%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
           +L Y      L V +I+   L A D  G SDP+VK++L PD  KK K +T++ +KTLNP 
Sbjct: 29  SLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPE 88
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL----- 144
           FNE F +              + ++D   K+L  +++D+D    +D IG  ++ +     
Sbjct: 89  FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135
Query: 145 -------CQIDLAQTIEEWRELQS 161
                  C  +  + IE W +LQ+
Sbjct: 136 RLKHWYECLKNKDKKIERWHQLQN 159

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 30  EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFE 78
           E  L+ +++  +L + ++QA +L   D  G SDP+VKVYLLP + +           K  
Sbjct: 8   EIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRR 67
Query: 79  TKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIG 138
           TK  +K+LNP +N+T ++K             +     M KTL   ++D+DRFS +D +G
Sbjct: 68  TKYVQKSLNPEWNQTVIYK------------SISMEQLMKKTLEVTVWDYDRFSSNDFLG 115
Query: 139 EVKVALCQIDLAQTIEEWRELQ 160
           EV + L           W  L+
Sbjct: 116 EVLIDLSSTSHLDNTPRWYPLK 137

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 18/144 (12%)
Query: 25  PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH-- 82
           P+ + + T+ +    N L V V    +L A    G SDPYV++YLLPDK++    K H  
Sbjct: 9   PLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVS 67
Query: 83  RKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEV 140
           +KTLNPVF+++F F VS               +   +TL  A+ +   F   D+  +G+V
Sbjct: 68  KKTLNPVFDQSFDFSVSL-------------PEVQRRTLDVAVKNSGGFLSKDKGLLGKV 114
Query: 141 KVALCQIDLAQTIEEWRELQSVEG 164
            VAL   +LA+   +W +L    G
Sbjct: 115 LVALASEELAKGWTQWYDLTEDSG 138

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 18/130 (13%)
Query: 39  ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVF 96
           A+ + VTV +A +L  +D  G SDPYVK+ L+PD +   K +T+  + TLNPV+NETFVF
Sbjct: 19  ADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
Query: 97  KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
            +                  + + L   ++D+DR S++D +G +   + ++ L   ++ W
Sbjct: 79  NLK--------------PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDGW 123
Query: 157 -RELQSVEGE 165
            + L   EGE
Sbjct: 124 YKLLNQEEGE 133

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 19/147 (12%)
Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
           L+ +     L VTV  A++L  +D  G SDPYVK+ L+PD K   K +TK  R TLNP +
Sbjct: 10  LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQW 69
Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NE+F FK+   ++              ++ L   I+D+DR +++D +G +   + ++ + 
Sbjct: 70  NESFTFKLKPSDK--------------DRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MK 114
Query: 151 QTIEEWRELQSVEGEGGQVYYLDGPKG 177
                W +L  +  E G+ Y +  P+G
Sbjct: 115 MPASGWYKL--LNQEEGEYYNVPIPEG 139

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
           L+ +     L VTV  A++L  +D  G SDPYVK+ L+PD K   K +TK  R TLNP +
Sbjct: 9   LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQW 68
Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NE+F FK+   ++              ++ L   I+D+DR +++D +G +   + ++   
Sbjct: 69  NESFTFKLKPSDK--------------DRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 114
Query: 151 QTIEEWRELQSVEGE 165
                ++ L   EGE
Sbjct: 115 PASGWYKLLNQEEGE 129

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS 99
           L VTV  A++L   D  G SDPYVK+ L+PD K   K +TK  R TLNP +NE+F FK+ 
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
             ++              ++ L   I+D+DR +++D  G +   + ++        ++ L
Sbjct: 80  PSDK--------------DRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKLL 125
Query: 160 QSVEGE 165
              EGE
Sbjct: 126 NQEEGE 131

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 15/111 (13%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y    N+L+V V++A  LP  D+ G SDPYVKV L   KK+  K +T V + T N V
Sbjct: 22  SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
           FNE FVF +   +  E+             ++ F + D +R S+++ IG +
Sbjct: 82  FNELFVFDIPCESLEEI-------------SVEFLVLDSERGSRNEVIGRL 119

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ +  + KK +T + + TLNP 
Sbjct: 17  SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
           +NE+F F+             VP+       +V  + D+D+  K+D IG+V V 
Sbjct: 77  YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 117

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ +  + KK +T + + TLNP 
Sbjct: 9   SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 68
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
           +NE+F F+             VP+       +V  + D+D+  K+D IG+V V 
Sbjct: 69  YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ +  + KK +T + + TLNP 
Sbjct: 10  SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 69
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
           +NE+F F+             VP+       +V  + D+D+  K+D IG+V V 
Sbjct: 70  YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKK--KFETKVHRKTLNP 88
           +L+Y+    SL V V +   L   D     S+PYVK YLLPDK +  K +T + R T+NP
Sbjct: 15  SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74
Query: 89  VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
           +++ET  ++             +P +    +TL F+++   RF ++  +GE ++ +    
Sbjct: 75  LYDETLRYE-------------IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121
Query: 149 LAQTIEEWRELQ---SVEGEG 166
           L + ++    L    S E EG
Sbjct: 122 LDKKLDHCLPLHGKISAESEG 142

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 17/133 (12%)
Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVF 90
           L +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P +
Sbjct: 14  LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 73
Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQID 148
           N+TF++  S ++R E  E          + L   ++D  R  + +   +GE+ + L +  
Sbjct: 74  NQTFIY--SPVHRREFRE----------RMLEITLWDQARVREEESEFLGEILIEL-ETA 120
Query: 149 LAQTIEEWRELQS 161
           L      W +LQ+
Sbjct: 121 LLDDEPHWYKLQT 133

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVF 90
           L +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P +
Sbjct: 11  LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 70
Query: 91  NETFVFKVSFLNRSEVFEQ 109
           N+TF++  S ++R E  E+
Sbjct: 71  NQTFIY--SPVHRREFRER 87

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYL-LPDKKKKF---ETKVHRKTLNPVFNETFVFK 97
           L V V+   DL   D+ G SDPYVK+ L + D+ ++    +TK  +KTLNP +NE F F+
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 98  VSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
           V                +  N  L+F +FD +R ++ D +G+V V L  +
Sbjct: 83  V----------------NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS 99
           L V V  A++L  +D  G SDPYVK+ L+PD K   K +TK  + +LNP +NETF F++ 
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
             ++              ++ L   I+D+D  S++D +G +   + ++  A     ++ L
Sbjct: 234 ESDK--------------DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLL 279
Query: 160 QSVEGE 165
              EGE
Sbjct: 280 SQEEGE 285

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS 99
           L V V  A++L  +D  G SDPYVK+ L+PD K   K +TK  + +LNP +NETF F++ 
Sbjct: 33  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
             ++              ++ L   I+D+D  S++D +G +   + ++  A     ++ L
Sbjct: 93  ESDK--------------DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLL 138
Query: 160 QSVEGE 165
              EGE
Sbjct: 139 SQEEGE 144

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 90
           L   +   +L + V+  +DL   D G   +PYVK YLLPD  K  K +TK+ RKT NP F
Sbjct: 13  LSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTF 71
Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NE  V+             G        + L  ++   +   ++  +G + + L   +L+
Sbjct: 72  NEMLVY------------SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119
Query: 151 QTIEEWRELQSV 162
           +   +W +L + 
Sbjct: 120 KETVKWYQLTAA 131

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYL---LPDKKKKFETKVHRKTLNPV 89
           LE + N+  + V VI    L   D+ G SDPYV+V L   +       +TK  +K+LNP 
Sbjct: 13  LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
           +NE  +F+V                      L+F +FD +R ++ D +G+V V L
Sbjct: 73  WNEEILFRVH----------------PQQHRLLFEVFDENRLTRDDFLGQVDVPL 111

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYL---LPDKKKKFETKVHRKTLNPVFNETFVFKV 98
           + V VI    L   D+ G SDPYV+V L   +       +TK  +K+LNP +NE  +F+V
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 99  SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
                                 ++F +FD +R ++ D +G+V V L
Sbjct: 70  L----------------PQRHRILFEVFDENRLTRDDFLGQVDVPL 99

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV 98
          +S+TV+ A+ L A D  G+SDPYV V +   KK+   TK     LNPV+ E F F+ 
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHFEC 72

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V VI+A +L A    G S+PY ++ +     + + T+  + TLNP +N    F   F 
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWN----FNCQFF 441
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
            +           D     L   +FD D+FS  D +G  ++ + +I   Q
Sbjct: 442 IK-----------DLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQ 480

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 40  NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVF 96
             L V VI+A  L        T  PYVKVYLL +     K +T++ RKTL+P++ ++ VF
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 97  KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
             S            P    +    V    D+ R       G  ++ L ++DL+  +  W
Sbjct: 90  DES------------PQGKVLQ---VIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGW 134
Query: 157 REL 159
            +L
Sbjct: 135 YKL 137

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V V++A DL A D  G SDP+  + L  D+    +T    K LNP +N+ F F     
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTF----- 66
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
                     P  D ++  L   +FD D     D +G+V + L  I   Q
Sbjct: 67  ----------PIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-59
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-59
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-59
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-55
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	7e-55
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	7e-55
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-54
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-54
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-53
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-33
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	8e-52
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-51
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-51
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-51
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-50
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-33
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-50
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	6e-50
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	5e-49
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-48
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-45
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-44
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-42
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-41
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-41
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-40
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-39
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	6e-39
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-38
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-36
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	9e-35
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	6e-33
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-31
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-25
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-24
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-23
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	7e-23
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-13
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	7e-11
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-09
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	4e-08
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	2e-04

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  181 bits (462), Expect = 3e-59
 Identities = 84/132 (63%), Positives = 96/132 (72%), Gaps = 13/132 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 34  SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +D   
Sbjct: 94  EQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 140

Query: 152 TIEEWRELQSVE 163
             EEWR+LQS E
Sbjct: 141 VTEEWRDLQSAE 152

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  181 bits (460), Expect = 5e-59
 Identities = 83/130 (63%), Positives = 95/130 (73%), Gaps = 13/130 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 26  SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +D   
Sbjct: 86  EQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132

Query: 152 TIEEWRELQS 161
             EEWR+LQS
Sbjct: 133 VTEEWRDLQS 142

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  180 bits (458), Expect = 9e-59
 Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 12/136 (8%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           ++ Y+F  ++L+V +++A++LPA D  GTSDP+VK+YLLPDKK K ETKV RK LNP +N
Sbjct: 18  SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF+F+            G PY   + + L   + D+DRFS++D IGEV + L ++DL Q
Sbjct: 78  ETFLFE------------GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ 125

Query: 152 TIEEWRELQSVEGEGG 167
               W++L+      G
Sbjct: 126 MQTFWKDLKPSGPSSG 141

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  171 bits (434), Expect = 5e-55
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 20/136 (14%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPAL-------DMGGTSDPYVKVYLLPDKKKKFETKVHRK 84
           + +YD   N L+V VI+A DLP              S+PYVK+ LLPD+K   +T V RK
Sbjct: 18  STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77

Query: 85  TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
           T  PVF E + F+             +P+ +A  +TL+  + DFD+FS+H  IG+V V L
Sbjct: 78  TQKPVFEERYTFE-------------IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124

Query: 145 CQIDLAQTIEEWRELQ 160
           C++DL +    W+ L 
Sbjct: 125 CEVDLVKGGHWWKALI 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  170 bits (433), Expect = 7e-55
 Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 14/133 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L YD + ++L  T+I+A+ L  +D  G +DPYVK++LLP   K  K  TK  R T NPV
Sbjct: 21  SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NET  +             G+   D   KTL  ++ D D+F  ++ IGE + +L ++  
Sbjct: 81  WNETLQYH------------GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128

Query: 150 AQTIEEWRELQSV 162
            Q       L+ V
Sbjct: 129 NQRKNFNICLERV 141

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  170 bits (432), Expect = 7e-55
 Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 14/132 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
           +LEY+F   +  V + +A  LPA+D    TSDPY+K+ +LP+KK K +T+V RKTL+P F
Sbjct: 14  SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           +ETF F             G+PY       L F I  FDRFS+ D IGEV + L  I+L+
Sbjct: 74  DETFTF------------YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121

Query: 151 Q-TIEEWRELQS 161
           +  +   RE+ S
Sbjct: 122 EGKMLMNREIIS 133

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  169 bits (429), Expect = 2e-54
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVF 90
            L+YD     L VT ++A      +  G  D YV+  +       + +T + ++ L+  +
Sbjct: 18  CLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
            E  V  +                +    TL   +   DRFS+H   GE+++ L    + 
Sbjct: 75  EEGLVLPL-------------AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121

Query: 151 QTIEEWRELQSVEGEGG 167
               +W EL++     G
Sbjct: 122 LGAAQWGELKTSGPSSG 138

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  168 bits (427), Expect = 6e-54
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 16/132 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 88
           +L+Y+    SL V V +   L   D     S+PYVK YLLPDK +  K +T + R T+NP
Sbjct: 15  SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74

Query: 89  VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
           +++ET  +++             P +    +TL F+++   RF ++  +GE ++ +    
Sbjct: 75  LYDETLRYEI-------------PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121

Query: 149 LAQTIEEWRELQ 160
           L + ++    L 
Sbjct: 122 LDKKLDHCLPLH 133

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  169 bits (431), Expect = 8e-53
 Identities = 85/134 (63%), Positives = 97/134 (72%), Gaps = 13/134 (9%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 11  SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 70

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +D   
Sbjct: 71  EQFTFK-------------VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117

Query: 152 TIEEWRELQSVEGE 165
             EEWR+LQS E E
Sbjct: 118 VTEEWRDLQSAEKE 131

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  119 bits (301), Expect = 2e-33
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 17/130 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K  KK +T + + TLNP 
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NE+F F+             VP+       +V  + D+D+  K+D IG+V V       
Sbjct: 202 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 248

Query: 150 AQTIEEWREL 159
                 W ++
Sbjct: 249 EL--RHWSDM 256

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  162 bits (413), Expect = 8e-52
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 25/143 (17%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFETK 80
            + YD    +L + ++QA +L   D  G SDP+VKVYLLP + +           K  TK
Sbjct: 12  QINYDLG--NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTK 69

Query: 81  VHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
             +K+LNP +N+T ++K             +     M KTL   ++D+DRFS +D +GEV
Sbjct: 70  YVQKSLNPEWNQTVIYK------------SISMEQLMKKTLEVTVWDYDRFSSNDFLGEV 117

Query: 141 KVALCQIDLAQTIEEWRELQSVE 163
            + L           W  L+   
Sbjct: 118 LIDLSSTSHLDNTPRWYPLKEQT 140

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  161 bits (410), Expect = 2e-51
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 90
           L   +   +L + V+  +DL   D G   +PYVK YLLPD  K  K +TK+ RKT NP F
Sbjct: 13  LSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTF 71

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NE  V+             G        + L  ++   +   ++  +G + + L   +L+
Sbjct: 72  NEMLVYS------------GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119

Query: 151 QTIEEWRELQS 161
           +   +W +L +
Sbjct: 120 KETVKWYQLTA 130

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  161 bits (409), Expect = 2e-51
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 18/137 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           T+ +    N L V V    +L A    G SDPYV++YLLPDK++  + +T V +KTLNPV
Sbjct: 16  TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPV 74

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQI 147
           F+++F F              V   +   +TL  A+ +   F   D+  +G+V VAL   
Sbjct: 75  FDQSFDFS-------------VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

Query: 148 DLAQTIEEWRELQSVEG 164
           +LA+   +W +L    G
Sbjct: 122 ELAKGWTQWYDLTEDSG 138

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  160 bits (408), Expect = 4e-51
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPV 89
            L +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P 
Sbjct: 13  KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 72

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQI 147
           +N+TF++              V   +   + L   ++D  R  +   + +GE+ + L   
Sbjct: 73  WNQTFIYS------------PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120

Query: 148 DLAQTIEEWRELQS 161
            L      W +LQ+
Sbjct: 121 LLDD-EPHWYKLQT 133

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  164 bits (417), Expect = 1e-50
 Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 15/143 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
            L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 12  ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV--ALCQIDL 149
           ETF F              VP A+   + L F+++DFDRFS+HD IG+V +   L   + 
Sbjct: 72  ETFQFS-------------VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 118

Query: 150 AQTIEEWRELQSVEGEGGQVYYL 172
                 WR++     E   +  L
Sbjct: 119 PPDRPLWRDILEGGSEKADLGEL 141

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  119 bits (300), Expect = 4e-33
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 16/129 (12%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
           L Y   A  L+VT+I+A +L A+D+ G SDPYVK  L+ + +  KK +T + + TLNP +
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NE  VF              V      N  L  A+ D+D    ++ IG  +V     D  
Sbjct: 205 NEALVFD-------------VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-P 250

Query: 151 QTIEEWREL 159
              E W E+
Sbjct: 251 HGREHWAEM 259

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  158 bits (401), Expect = 3e-50
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPV 89
            L +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P 
Sbjct: 10  KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 69

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQI 147
           +N+TF++              V   +   + L   ++D  R  +   + +GE+ + L   
Sbjct: 70  WNQTFIYS------------PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117

Query: 148 DLAQTIEEWRELQ 160
            L      W +LQ
Sbjct: 118 LLDD-EPHWYKLQ 129

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  158 bits (402), Expect = 6e-50
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNP 88
            L+YD      ++ +IQ  +L AL         ++V +LP  +     F T+    +   
Sbjct: 35  ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTL 94

Query: 89  VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
           VFNE F                + Y     KTL   +   DR    + +G  +++L ++ 
Sbjct: 95  VFNEVFWVS-------------MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141

Query: 149 LAQTI-EEWRELQS 161
            +      W  L S
Sbjct: 142 RSGERSTRWYNLLS 155

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  154 bits (390), Expect = 2e-48
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 17/133 (12%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 90
           ++   +   L V V  A++L  +D  G SDPYVK+ L+PD K   K +TK  + +LNP +
Sbjct: 24  IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEW 83

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           NETF F+             +  +D  ++ L   I+D+D  S++D +G +   + ++  A
Sbjct: 84  NETFRFQ-------------LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129

Query: 151 QTIEEWRELQSVE 163
              + W +L S E
Sbjct: 130 GV-DGWFKLLSQE 141

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  148 bits (374), Expect = 1e-45
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 20/135 (14%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +  +     L V VI+A  L        T  PYVKVYLL +     K +T++ RKTL+P+
Sbjct: 23  IGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPL 82

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQID 148
           + ++ VF  S                   K L   ++ D+ R      +G  ++ L ++D
Sbjct: 83  YQQSLVFDESP----------------QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126

Query: 149 LAQTIEEWRELQSVE 163
           L+  +  W +L    
Sbjct: 127 LSSMVIGWYKLFPPS 141

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  144 bits (366), Expect = 1e-44
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 20/139 (14%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
            L  D     L + +I+ + L +    GT DPYVK+ L+P+  +    +T+      +P 
Sbjct: 19  RLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI- 147
           F+E F F V                +   K L+  +++    S+    IG +   +  + 
Sbjct: 78  FHEHFFFPVQE--------------EDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL 123

Query: 148 DLAQTIEEWRELQSVEGEG 166
              + I  W  L   E  G
Sbjct: 124 TPDKEISGWYYLLG-EHLG 141

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  139 bits (352), Expect = 2e-42
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 17/136 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y      L V +I+   L A+D  G SDP+VK++L PD  K  K +T++ +KTLNP 
Sbjct: 29  SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE F +              + ++D   K+L  +++D+D    +D IG  ++ +     
Sbjct: 89  FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135

Query: 150 AQTIEEWRELQSVEGE 165
               + W E    + +
Sbjct: 136 RL--KHWYECLKNKDK 149

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  137 bits (346), Expect = 1e-41
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 19/130 (14%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPV 89
           LE + N+  + V VI    L   D+ G SDPYV+V L           +TK  +K+LNP 
Sbjct: 13  LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NE  +F+V                      L+F +FD +R ++ D +G+V V L  +  
Sbjct: 73  WNEEILFRV----------------HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPT 116

Query: 150 AQTIEEWREL 159
                E    
Sbjct: 117 ENPRLERPYT 126

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  136 bits (344), Expect = 2e-41
 Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 17/130 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+   K+  K +T   ++ LNP+
Sbjct: 8   SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI 67

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE+F F              +P       T++  + D D+ S++D IG++ ++      
Sbjct: 68  FNESFAFD-------------IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPG 114

Query: 150 AQTIEEWREL 159
               + W+++
Sbjct: 115 EV--KHWKDM 122

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  134 bits (340), Expect = 1e-40
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y    N+L+V V++A  LP  D+ G SDPYVKV L   KK+  K +T V + T N V
Sbjct: 22  SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE FVF              +P       ++ F + D +R S+++ IG + +       
Sbjct: 82  FNELFVFD-------------IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGS 128

Query: 150 AQTIEEWRELQS 161
                 W+E+  
Sbjct: 129 GG--GHWKEICD 138

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  131 bits (330), Expect = 5e-39
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 19/128 (14%)

Query: 35  YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFN 91
           ++ +   + V VI    L   D+ G SDPYV+V L           +TK  +K+LNP +N
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E  +F+V                      ++F +FD +R ++ D +G+V V L  +    
Sbjct: 63  EEILFRV----------------LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTEN 106

Query: 152 TIEEWREL 159
              E    
Sbjct: 107 PRMERPYT 114

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  130 bits (329), Expect = 6e-39
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 17/130 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K  KK +T + + TLNP 
Sbjct: 17  SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NE+F F+             VP+       +V  + D+D+  K+D IG+V V       
Sbjct: 77  YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123

Query: 150 AQTIEEWREL 159
                 W ++
Sbjct: 124 EL--RHWSDM 131

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  128 bits (324), Expect = 2e-38
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 16/131 (12%)

Query: 38  NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 97
           ++  L V V  A ++P    G   DP V V    +KKK   TK     LNPV+NE   F 
Sbjct: 5   SSGMLRVIVESASNIPKTKFG-KPDPIVSVIFKDEKKK---TKKVDNELNPVWNEILEFD 60

Query: 98  VSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR 157
           +                   + +L   + DF+   ++  IG   VAL  +   Q+     
Sbjct: 61  LR------------GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY 108

Query: 158 ELQSVEGEGGQ 168
           +L S+  E GQ
Sbjct: 109 KLISLLNEKGQ 119

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  123 bits (311), Expect = 1e-36
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 19/129 (14%)

Query: 38  NANSLSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 94
           +++  +V V++A  +      DM  T DPYV++++      +  T+     +NPV+NETF
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 95  VFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 154
            F +                      L   + D + +   + +G     +  + + +  E
Sbjct: 61  EFILD---------------PNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKE 104

Query: 155 EWRELQSVE 163
                  V 
Sbjct: 105 VPFIFNQVT 113

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  118 bits (299), Expect = 9e-35
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V ++ A+ L   D     DPYV++      +K            P +NETF+F VS  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSEG 69

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQ 160
                              L   IFD D  ++ D +GE  + L  + +  +I      + 
Sbjct: 70  TT----------------ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113

Query: 161 SVEGEGGQVY 170
             E   G+++
Sbjct: 114 KDEEYKGEIW 123

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  114 bits (287), Expect = 6e-33
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 21/125 (16%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V V++A DL A D  G SDP+  + L  D+ +   T    K LNP +N+ F F +   
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQ---THTVYKNLNPEWNKVFTFPI--- 68

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161
                          ++  L   +FD D     D +G+V + L  I   Q       L++
Sbjct: 69  -------------KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKN 113

Query: 162 VEGEG 166
            + E 
Sbjct: 114 KDLEQ 118

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  109 bits (274), Expect = 5e-31
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 22/123 (17%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           + +TV+ A++L   D     DP+ K+ +    +    T   + TL+P +N+ +   V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH-STDTVKNTLDPKWNQHYDLYVGK- 64

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ---IGEVKVALCQI-DLAQTIEEWR 157
                             ++  ++++  +  K      +G V++    I  L  T  +  
Sbjct: 65  ----------------TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRL 108

Query: 158 ELQ 160
           +L 
Sbjct: 109 DLC 111

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 97.3 bits (242), Expect = 7e-26
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 29/144 (20%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L +TVI A+            PYV+V +    KK   T+    T +P + +     V+  
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKK---TEKCNNTNSPKWKQPLTVIVT-- 92

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI---DLAQTIEEWRE 158
                              L F ++          +G   + + +    +  +  E    
Sbjct: 93  ---------------PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137

Query: 159 LQSVEGEGGQV------YYLDGPK 176
           LQ    +            LDG +
Sbjct: 138 LQLGGDKEPTETIGDLSICLDGLQ 161

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 94.5 bits (235), Expect = 5e-25
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 16/128 (12%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           +S+TV+ A+ L A D  G+SDPYV V +    K K  TK     LNPV+ E F F+    
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHNS 75

Query: 102 NRS---EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 158
           +      V +         +  +   +    +    D +G+  + +    L+  ++ W  
Sbjct: 76  SDRIKVRVLD--------EDDDIKSRVKQRFKRESDDFLGQTIIEV--RTLSGEMDVWYN 125

Query: 159 LQSVEGEG 166
           L     + 
Sbjct: 126 LDKRTDKS 133

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 92.7 bits (230), Expect = 3e-24
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 33/134 (24%)

Query: 41  SLSVTVIQAEDLPALDMGG----------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
            L V + +A  L                   DPY+ V +  D+ +  +T   +KT  P +
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKPTY 87

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI--- 147
           NE F   V+                     L  A+F          +    +   ++   
Sbjct: 88  NEEFCANVTD-----------------GGHLELAVFHETPLGYDHFVANCTLQFQELLRT 130

Query: 148 -DLAQTIEEWRELQ 160
              + T E W +L+
Sbjct: 131 TGASDTFEGWVDLE 144

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 96.5 bits (239), Expect = 2e-23
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 19/118 (16%)

Query: 42  LSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV 98
            +V V++A  +      DM  T DPYV++++      +  T+     +NPV+NETF F +
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79

Query: 99  SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
                                 L   + D +     + +G     +  + + +  E  
Sbjct: 80  ---------------DPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVP 121

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 88.4 bits (219), Expect = 7e-23
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 33/138 (23%)

Query: 41  SLSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 89
            L + + +A  L                    DPY+ + +  D  +  +T   +KT +P 
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPA 64

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-- 147
           +++ FV  V                      +  A+F        D +    +   ++  
Sbjct: 65  WHDEFVTDVCNGR-----------------KIELAVFHDAPIGYDDFVANCTIQFEELLQ 107

Query: 148 DLAQTIEEWRELQSVEGE 165
           + ++  E+W +L+  EG+
Sbjct: 108 NGSRHFEDWIDLE-PEGK 124

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 66.6 bits (161), Expect = 4e-13
 Identities = 28/168 (16%), Positives = 45/168 (26%), Gaps = 22/168 (13%)

Query: 40  NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL---NPVFNETFVF 96
           N L + +I+A +LP          Y ++ L  D      T    ++       + E F F
Sbjct: 11  NVLKLWIIEARELPP-----KKRYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63

Query: 97  KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
                         +P   A+   L        +  K   +G V V +  +      E+W
Sbjct: 64  NN------------LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111

Query: 157 RELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITI 204
             +    G GG      G  G    G                      
Sbjct: 112 YPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 64.5 bits (156), Expect = 1e-12
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 29/130 (22%)

Query: 43  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN 102
            V+  +AE L        +D Y+KV+      ++F T V     NP + +   F+   L+
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFF---GGQEFRTGVVWNNNNPRWTDKMDFENVLLS 452

Query: 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWRELQS 161
                             L   ++D D     D +G      C     +   E   EL  
Sbjct: 453 --------------TGGPLRVQVWDADYGWDDDLLGS-----CDRSPHSGFHEVTCELNH 493

Query: 162 VEGEGGQVYY 171
                G+V +
Sbjct: 494 -----GRVKF 498

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 56.9 bits (137), Expect = 7e-11
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V V +A+   A +     + YV + +     K   T +  +   P + + F+F++   
Sbjct: 7   LCVGVKKAKFDGAQE---KFNTYVTLKV--QNVKS--TTIAVRGSQPSWEQDFMFEI--- 56

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWREL 159
                        + ++  L   +++         +G V + L  I  +  +   EW  L
Sbjct: 57  -------------NRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL 102

Query: 160 QS-VEGEGGQVYYLDGPKG 177
            S       ++     P  
Sbjct: 103 DSQAIMADSEICGTKDPTF 121

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV-FNETFVFKVS 99
           +L V +    +L      G +D   KV     + + F ++V     +   F+ETF + V+
Sbjct: 22  ALIVHLKTVSELR-----GRADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWPVA 73

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
                         +   N+ L   IF++ +   +  IG  ++ L ++
Sbjct: 74  -------------SSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 27/141 (19%)

Query: 40  NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
           + L V V +A+   A +     + YV + +     +   T +  +   P + + F+F++ 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKV--QNVES--TTIAVRGSQPSWEQDFMFEI- 65

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWR 157
                          + ++  L   +++         +G V + L  I  +  +   EW 
Sbjct: 66  ---------------NRLDLGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWL 109

Query: 158 ELQS-VEGEGGQVYYLDGPKG 177
            L S       ++     P  
Sbjct: 110 TLDSQAIMADSEICGTKDPTF 130

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 21/141 (14%)

Query: 13  YLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTS--DPYVKVYL 69
           Y+L    L      F      +   +    L V +I  + LP ++    S  DP V V +
Sbjct: 469 YVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEI 528

Query: 70  L---PDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIF 126
                D   +    +     NP ++  F F+V+  + +                + F + 
Sbjct: 529 HGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLA---------------LVRFMVE 573

Query: 127 DFDRFSKHDQIGEVKVALCQI 147
           D+D  SK+D IG+  +    +
Sbjct: 574 DYDSSSKNDFIGQSTIPWNSL 594

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 13  YLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL- 70
           YLL  + +      F P   +  D   AN+L V VI  + L           YV+V +  
Sbjct: 697 YLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLS----DRKVGIYVEVDMFG 752

Query: 71  --PDKKKKFETK-VHRKTLNPVFNET-FVFK 97
              D ++K+ T+     + NPV++E  F F 
Sbjct: 753 LPVDTRRKYRTRTSQGNSFNPVWDEEPFDFP 783

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.9
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.9
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.89
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.88
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.88
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.88
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.88
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.87
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.87
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.87
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.87
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.87
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.87
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.87
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.86
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.86
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.86
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.86
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.85
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.85
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.83
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.83
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.82
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.81
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.81
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.81
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.81
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.8
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.8
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.79
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.78
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.76
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.76
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.74
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.74
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.72
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.7
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.63
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.57
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.53
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.52
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.51
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.51
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.51
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.5
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.49
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.42
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.36
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.57
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.5
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.91
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.13
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	90.12
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	87.74
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	86.88

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=1.5e-22  Score=153.96  Aligned_cols=127  Identities=66%  Similarity=1.063  Sum_probs=113.7

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ....|++++++.|++..+.|.|+|++|++|+..+..+.+||||++.+.+++.+.++|++++++.+|.|+|+|.|.     
T Consensus        25 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-----   99 (152)
T 1rsy_A           25 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-----   99 (152)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-----
T ss_pred             CCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEe-----
Confidence            445589999999999999999999999999999888999999999998766778999999999999999999998     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                              ++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.+.
T Consensus       100 --------v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          100 --------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             --------CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             --------ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence                    4444445689999999999999999999999999999888888999999864

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=152.31  Aligned_cols=129  Identities=44%  Similarity=0.829  Sum_probs=115.2

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      ...|++++++.|.+..+.|+|+|++|++|+..+..+.+||||++.+.+++.+.++|++++++.+|.|+|+|.|.+     
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~-----   84 (141)
T 2d8k_A           10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG-----   84 (141)
T ss_dssp             CCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECS-----
T ss_pred             ceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECc-----
Confidence            346899999999999999999999999999998889999999999987667789999999999999999999984     


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                             ++.+++....|.|+|||++.++++++||++.++|.++..+....+|++|.+...
T Consensus        85 -------~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  138 (141)
T 2d8k_A           85 -------FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP  138 (141)
T ss_dssp             -------CCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred             -------cCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence                   444444567999999999999999999999999999988888889999987654

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.89  E-value=2e-22  Score=151.52  Aligned_cols=125  Identities=67%  Similarity=1.073  Sum_probs=113.5

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      ...|+.++++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+++.+.++|++++++.+|.|+|+|.|.      
T Consensus        18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~------   91 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK------   91 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEEC------
T ss_pred             cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEe------
Confidence            34588999999999999999999999999998888899999999998777789999999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                             ++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.+
T Consensus        92 -------v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           92 -------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             -------CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             -------ecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence                   444455568999999999999999999999999999988888999999975

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.88  E-value=4.9e-22  Score=150.39  Aligned_cols=129  Identities=29%  Similarity=0.506  Sum_probs=112.2

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      ...|++.+++.|.+..+.|.|+|++|++|+..+ ..+.+||||++.+.+...  .+++|++++++.+|.|+|+|.|.   
T Consensus         7 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~---   83 (148)
T 3fdw_A            7 FVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE---   83 (148)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEE---
T ss_pred             ccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEE---
Confidence            345889999999999999999999999999887 578899999999987654  48899999999999999999998   


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                                ++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.++...
T Consensus        84 ----------v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           84 ----------IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             ----------CCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             ----------eChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence                      5555555678999999999999999999999999999877788899999986554

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=6.1e-22  Score=148.66  Aligned_cols=128  Identities=36%  Similarity=0.568  Sum_probs=111.0

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecc
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFL  101 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~  101 (207)
                      ...|++++++.|.+..+.|.|+|++|++|+..+..+ +||||++.+.+++.  ..++|++++++.+|.|+|+|.|.    
T Consensus         8 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~----   82 (142)
T 2dmg_A            8 SPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS----   82 (142)
T ss_dssp             CSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEEC----
T ss_pred             CCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEE----
Confidence            445889999999999999999999999999998888 99999999987554  68899999999999999999998    


Q ss_pred             cccceeccCcccCcCCCceEEEEEEecCCCCC--CceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~--~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                               ++..++....|.|+|||++.++.  +++||++.++|.++..+....+|++|.+..+.
T Consensus        83 ---------v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~~  139 (142)
T 2dmg_A           83 ---------VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGP  139 (142)
T ss_dssp             ---------CCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCSC
T ss_pred             ---------ecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCCC
Confidence                     44344445699999999998753  57999999999998877788899999986554

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=155.62  Aligned_cols=125  Identities=23%  Similarity=0.338  Sum_probs=109.0

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC---CceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      ...|..++++.|++..+.|+|.|++|+||+..+..|.+||||++.+.+..   ..+++|++++++.+|.|||+|.|.   
T Consensus        27 ~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~---  103 (155)
T 2z0u_A           27 VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS---  103 (155)
T ss_dssp             -CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEE---
T ss_pred             CCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEE---
Confidence            34588999999999999999999999999999989999999999998632   247999999999999999999999   


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeec-cccccceEEEccc
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-LAQTIEEWRELQS  161 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~-~~~~~~~w~~L~~  161 (207)
                                ++..++....|.|+|||++.++++++||++.++|.++. .+....+|++|++
T Consensus       104 ----------v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          104 ----------MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             ----------CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ----------cCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence                      44444455789999999999999999999999999985 3567789999863

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=1.4e-21  Score=146.44  Aligned_cols=128  Identities=23%  Similarity=0.329  Sum_probs=111.2

Q ss_pred             ccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECC-CCceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         22 TDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        22 ~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      +....|+.++++.|+...+.|.|+|++|++   .+..+.+||||++.+.+. +...++|++++++.+|.|+|+|.|.   
T Consensus         8 s~~~~G~l~~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~---   81 (138)
T 1wfm_A            8 SWNQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP---   81 (138)
T ss_dssp             CCSSCCEEEEEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE---
T ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEE---
Confidence            345569999999999999999999999994   566789999999999764 3347899999999999999999999   


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                                ++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.+..+.
T Consensus        82 ----------v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~~  136 (138)
T 1wfm_A           82 ----------LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS  136 (138)
T ss_dssp             ----------CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSCC
T ss_pred             ----------ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCCcC
Confidence                      5555666789999999999999999999999999999777788899999976543

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=2.7e-21  Score=142.62  Aligned_cols=122  Identities=33%  Similarity=0.538  Sum_probs=103.1

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      .|...+++.|++..+.|.|+|++|++|+..+..+.+|||+++.+.+++  ...++|++++++.+|.|+|+|.|.+     
T Consensus         4 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~-----   78 (129)
T 2bwq_A            4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP-----   78 (129)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECS-----
T ss_pred             eEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEcc-----
Confidence            488899999999999999999999999999888999999999997654  4689999999999999999999984     


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCC--CceeEEEEEeceeeccccccceEEEcc
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~--~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                             .+..++....|.|+|||++.+++  +++||++.++|.++.... ..+||+|+
T Consensus        79 -------~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           79 -------VHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             -------CCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             -------CCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence                   44444556799999999999886  899999999999986544 78999984

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=147.84  Aligned_cols=129  Identities=40%  Similarity=0.690  Sum_probs=110.7

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCC-CC------CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEE
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPAL-DM------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV   95 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~-~~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~   95 (207)
                      ....|.+++++.|.+..+.|.|+|++|++|+.. +.      .+.+||||++.+.++..+.++|++++++.+|.|+|+|.
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~   88 (147)
T 2enp_A            9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYT   88 (147)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCE
T ss_pred             CCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEE
Confidence            345688999999999999999999999999984 32      35899999999987666789999999999999999999


Q ss_pred             EeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645         96 FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus        96 f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                      |.             ++..++....|.|+|||++.++++++||++.++|.++..+.....|+.|.+...
T Consensus        89 f~-------------v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  144 (147)
T 2enp_A           89 FE-------------IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP  144 (147)
T ss_dssp             EC-------------CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCC
T ss_pred             EE-------------eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCCC
Confidence            98             443343446899999999999999999999999999977777789999987543

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.87  E-value=4.8e-21  Score=142.90  Aligned_cols=124  Identities=27%  Similarity=0.488  Sum_probs=106.6

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      +...+.+.|+...+.|.|+|++|++|+. +..+.+||||++.+.+++  ...++|++++++.+|.|||+|.|..      
T Consensus         7 ~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~------   79 (134)
T 2b3r_A            7 GSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG------   79 (134)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEES------
T ss_pred             ccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECC------
Confidence            4567888999999999999999999997 668899999999997653  4688999999999999999999982      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                            ++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.+.+
T Consensus        80 ------v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           80 ------YSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             ------CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             ------cCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence                  33334456799999999999999999999999999998888889999998643

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=2.2e-21  Score=145.10  Aligned_cols=129  Identities=31%  Similarity=0.502  Sum_probs=111.9

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      ....|.+.+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.++.  ...++|++++++.+|.|+|+|.|.+  
T Consensus         4 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~--   81 (141)
T 1v27_A            4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP--   81 (141)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECS--
T ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEcc--
Confidence            456689999999999999999999999999999988999999999986543  4688999999999999999999984  


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCC--CceeEEEEEeceeeccccccceEEEccccCC
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~--~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                                ++..++....|.|+|||++.++.  +++||++.++|.++... ...+|++|.+...
T Consensus        82 ----------~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~-~~~~W~~L~~~~~  136 (141)
T 1v27_A           82 ----------VHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD-DEPHWYKLQTHDS  136 (141)
T ss_dssp             ----------CCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS-SEEEEEECBCCSS
T ss_pred             ----------CCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCC-CCCceEECccccc
Confidence                      44455566899999999999886  89999999999998654 4789999987544

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=8.4e-21  Score=141.86  Aligned_cols=128  Identities=42%  Similarity=0.658  Sum_probs=110.8

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      ..|...+++.|.+..+.|.|+|++|++|+..+.. +.+||||++.+.+++.+.++|++++++.+|.|+|+|.|..     
T Consensus         7 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~-----   81 (138)
T 1ugk_A            7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG-----   81 (138)
T ss_dssp             CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEEC-----
T ss_pred             ccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcC-----
Confidence            4588999999999999999999999999999874 8899999999987666899999999999999999999952     


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccccc-ceEEEccccCC
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWRELQSVEG  164 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~-~~w~~L~~~~~  164 (207)
                             ++..++....|.|+|||++.++++++||++.++|.++..+... ..|++|.+.+.
T Consensus        82 -------v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           82 -------IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS  136 (138)
T ss_dssp             -------CCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSS
T ss_pred             -------cCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCC
Confidence                   4545555679999999999999999999999999999776444 46799986544

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.87  E-value=4.8e-21  Score=145.83  Aligned_cols=127  Identities=24%  Similarity=0.347  Sum_probs=107.4

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      ..+.|+.++++.|++..+.|.|+|++|++|+..+ .+.+||||++.+.+..  ...++|++++++.+|.|+|+|.|.   
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~---   85 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP---   85 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEE---
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEe---
Confidence            3455899999999999999999999999999988 6899999999997643  458899999999999999999998   


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCC-CceeEEEEEeceeecc-ccccceEEEccccCC
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSK-HDQIGEVKVALCQIDL-AQTIEEWRELQSVEG  164 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~-~~~lG~~~v~L~~l~~-~~~~~~w~~L~~~~~  164 (207)
                                ++..++. ..|.|+|||.+.+++ +++||++.++|.++.. +....+|+.|.+...
T Consensus        86 ----------v~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           86 ----------VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             ----------CCGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred             ----------cccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence                      4434433 459999999998876 8999999999999974 678889999987544

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.87  E-value=1.2e-21  Score=145.88  Aligned_cols=131  Identities=32%  Similarity=0.578  Sum_probs=113.0

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      .|+..+++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+.+.  ..++|++++++.+|.|+|+|.|.      
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~------   75 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD------   75 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEE------
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEE------
Confidence            4788999999999999999999999999998889999999999975433  47899999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                             ++..++....|.|+|||++.++++++||++.++|.++  +....+|++|...+++....||
T Consensus        76 -------v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~--~~~~~~W~~l~~~~~~~~~~Wh  134 (138)
T 3n5a_A           76 -------IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG--PGEVKHWKDMIARPRQPVAQWH  134 (138)
T ss_dssp             -------CCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC--HHHHHHHHHHHHSTTCCEEEEE
T ss_pred             -------CChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC--ChHHHHHHHHHhCCCCeEEEEe
Confidence                   4545555678999999999999999999999999874  3456788888887777777775

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.86  E-value=1.6e-21  Score=148.21  Aligned_cols=132  Identities=32%  Similarity=0.452  Sum_probs=109.2

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ..|+..+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+++..  +++|++++++.+|.|+|+|.|.     
T Consensus        15 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-----   89 (153)
T 1w15_A           15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-----   89 (153)
T ss_dssp             -CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-----
T ss_pred             cccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEE-----
Confidence            458899999999999999999999999999988899999999999764443  7799999999999999999999     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                              ++..++....|.|+|||++.++++++||++.++|.+  .+....+|++|...+++....|+
T Consensus        90 --------v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~~~~Wh  148 (153)
T 1w15_A           90 --------IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQIAKWH  148 (153)
T ss_dssp             --------CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCCEEEEE
T ss_pred             --------CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCeeeecc
Confidence                    454555567899999999999999999999999988  45567789999887777777775

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=2.2e-20  Score=155.13  Aligned_cols=127  Identities=67%  Similarity=1.077  Sum_probs=114.9

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      ..|..++++.|++..+.|.|+|++|++|+..+..+.+||||++.+.+.+.+.++|+++.++.+|.|+|+|.|.       
T Consensus         4 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~-------   76 (284)
T 2r83_A            4 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-------   76 (284)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEEC-------
T ss_pred             ceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEE-------
Confidence            4688999999999999999999999999999888999999999998766678999999999999999999998       


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                            ++..++....|.|+|||.+.++++++||++.++|.++..+....+|++|.+..+
T Consensus        77 ------v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  130 (284)
T 2r83_A           77 ------VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK  130 (284)
T ss_dssp             ------CCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS
T ss_pred             ------echHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc
Confidence                  555555668999999999999999999999999999988888899999987543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.86  E-value=2.8e-21  Score=148.96  Aligned_cols=136  Identities=29%  Similarity=0.461  Sum_probs=113.9

Q ss_pred             cccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEee
Q psy17645         21 LTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKV   98 (207)
Q Consensus        21 ~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~   98 (207)
                      ......|.+.+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+..  ...++|++++++.+|.|+|+|.|. 
T Consensus        18 ~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-   96 (166)
T 2cm5_A           18 GDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-   96 (166)
T ss_dssp             --CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-
T ss_pred             CCcCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEE-
Confidence            34455689999999999999999999999999999888999999999997643  368899999999999999999999 


Q ss_pred             ecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645         99 SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                                  ++..++....|.|+|||++.++++++||++.++|.++.  ....+|++|...++.....|+
T Consensus        97 ------------v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~~~~~Wh  155 (166)
T 2cm5_A           97 ------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKKIERWH  155 (166)
T ss_dssp             ------------CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTCCEEEEE
T ss_pred             ------------cchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCCCCcceEee
Confidence                        44444456799999999999999999999999998853  355678887776666666665

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.86  E-value=1.7e-20  Score=143.50  Aligned_cols=127  Identities=35%  Similarity=0.603  Sum_probs=106.1

Q ss_pred             ccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeee
Q psy17645         22 TDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS   99 (207)
Q Consensus        22 ~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~   99 (207)
                      .....|++++++.|.+..+.|.|+|++|+||+..+..+.+||||++.+.+.+.  ..++|++++++.+|.|+|+|.|.  
T Consensus         7 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~--   84 (159)
T 1tjx_A            7 ILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE--   84 (159)
T ss_dssp             GGGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE--
T ss_pred             CcCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEE--
Confidence            34456999999999999999999999999999999889999999999975433  47899999999999999999998  


Q ss_pred             cccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeec------------cccccceEEEccc
Q psy17645        100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID------------LAQTIEEWRELQS  161 (207)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~------------~~~~~~~w~~L~~  161 (207)
                                 ++..++....|.|+|||++.++++++||++.+++..+.            .+....+||.|.+
T Consensus        85 -----------v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A           85 -----------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             -----------CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             -----------cCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence                       44444455789999999999999999999999998642            2234556666654

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.85  E-value=1.4e-20  Score=141.18  Aligned_cols=127  Identities=35%  Similarity=0.496  Sum_probs=109.8

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeecc
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFL  101 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~  101 (207)
                      ...|..++++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+..  ...++|++++++.+|.|+|+|.|..   
T Consensus        13 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~---   89 (142)
T 2chd_A           13 TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG---   89 (142)
T ss_dssp             -CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEES---
T ss_pred             CccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcc---
Confidence            34588999999999999999999999999999988999999999997643  3689999999999999999999973   


Q ss_pred             cccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                               ++..++....|.|+|||++.++++++||++.++|.++..+.....|+.|..+
T Consensus        90 ---------~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           90 ---------ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             ---------CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             ---------cCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence                     3333333468999999999999999999999999999888888889888753

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=4.2e-21  Score=143.99  Aligned_cols=125  Identities=35%  Similarity=0.589  Sum_probs=107.9

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC-----------ceEEeeeecCCCCCeEecE
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK-----------KKFETKVHRKTLNPVFNET   93 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~-----------~~~~T~~~~~t~~P~w~e~   93 (207)
                      -.|++++++.|+  .+.|.|+|++|++|+..+..|.+||||++.+.+...           ..++|++++++.+|.|||.
T Consensus         5 ~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~   82 (142)
T 1rh8_A            5 ITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT   82 (142)
T ss_dssp             CCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred             cceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCE
Confidence            358899999998  789999999999999999889999999999965432           3578999999999999999


Q ss_pred             EEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645         94 FVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus        94 ~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                      |.|..            ++.+++....|.|+|||++.++++++||++.++|.++..+....+||+|.+..
T Consensus        83 f~f~~------------v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           83 VIYKS------------ISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEECS------------CCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEECC------------cCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            99973            44444456799999999999999999999999999998777888999998654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.83  E-value=2e-19  Score=139.47  Aligned_cols=125  Identities=28%  Similarity=0.448  Sum_probs=107.0

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFL  101 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~-~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~  101 (207)
                      ..|+.++++.|  ..+.|.|+|++|++|+..+. .+.+||||++.+.+...  ..++|++++++.+|.|||+|.|.+   
T Consensus        17 ~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v---   91 (171)
T 2q3x_A           17 AMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE---   91 (171)
T ss_dssp             CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS---
T ss_pred             CccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe---
Confidence            34888999999  68999999999999999885 68999999999975433  378999999999999999999983   


Q ss_pred             cccceeccCcccCcCCCceEEEEEE-ecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCc
Q psy17645        102 NRSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG  167 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~i~v~-d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~  167 (207)
                                +.   ....|.|+|| |++.++++++||++.++|.++..+....+|++|.+......
T Consensus        92 ----------~~---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~~~  145 (171)
T 2q3x_A           92 ----------SP---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVD  145 (171)
T ss_dssp             ----------CC---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGGGSS
T ss_pred             ----------cC---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccccCC
Confidence                      32   3478999999 99999999999999999999987888899999998766443

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.82  E-value=4.4e-19  Score=134.58  Aligned_cols=128  Identities=33%  Similarity=0.476  Sum_probs=98.5

Q ss_pred             CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645         37 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY  113 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~  113 (207)
                      ...+.|+|+|++|++|+..+..+.+||||++.+.+...   ..++|++++++.+|.|+|+|.|.+             ..
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-------------~~   83 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV-------------HP   83 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEE-------------CT
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEe-------------cC
Confidence            46788999999999999998889999999999974332   578999999999999999999995             21


Q ss_pred             CcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccccc------ceEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645        114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI------EEWRELQSVEGEGGQVYYLDGPKGNLATGKKALY  187 (207)
Q Consensus       114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~------~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~  187 (207)
                         ....|.|+|||++.++++++||++.++|.++..+...      .+|+.|.+....       ....|+|.+  ++.|
T Consensus        84 ---~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~-------~~~~G~i~l--~l~~  151 (153)
T 3b7y_A           84 ---QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK-------SRVKGYLRL--KMTY  151 (153)
T ss_dssp             ---TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTT-------CCCCSEEEE--EEEE
T ss_pred             ---CCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCC-------CCcceEEEE--EEEE
Confidence               3468999999999999999999999999998766543      489999865422       234699998  5556


Q ss_pred             ec
Q psy17645        188 LP  189 (207)
Q Consensus       188 ~~  189 (207)
                      .|
T Consensus       152 ~P  153 (153)
T 3b7y_A          152 LP  153 (153)
T ss_dssp             CC
T ss_pred             eC
Confidence            55

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=9.1e-20  Score=135.37  Aligned_cols=128  Identities=28%  Similarity=0.389  Sum_probs=106.4

Q ss_pred             EEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCc
Q psy17645         32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGV  111 (207)
Q Consensus        32 ~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~  111 (207)
                      ++.|....+.|+|+|++|++|+..+..|.+||||++.+.   .+.++|++++++.+|.|+|+|.|.+             
T Consensus         5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~-------------   68 (133)
T 2ep6_A            5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPI-------------   68 (133)
T ss_dssp             CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEE-------------
T ss_pred             cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEe-------------
Confidence            345667889999999999999999888999999999983   4678999999999999999999995             


Q ss_pred             ccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645        112 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALY  187 (207)
Q Consensus       112 ~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~  187 (207)
                      .  + ....|.|+|||++.++++++||++.++|.++..+  ..+|++|......       ....|+|.+.+++.|
T Consensus        69 ~--~-~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~--~~~w~~L~~~~~~-------~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           69 K--D-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG--QPNCYVLKNKDLE-------QAFKGVIYLEMDLIY  132 (133)
T ss_dssp             S--C-TTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS--CCEECCCBCSCTT-------SCCSSEEEEEEEEEE
T ss_pred             c--C-CCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCC--CceEEEeecCCCC-------CccceEEEEEEEEEe
Confidence            2  1 2468999999999988899999999999998654  3589999865443       235689999776554

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=130.35  Aligned_cols=126  Identities=26%  Similarity=0.358  Sum_probs=103.0

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc-C
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD-A  116 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~-~  116 (207)
                      ..+.|.|+|++|++|+..+. +.+||||++.+.   .+.++|++++++.+|.|+|.|.|.+             .... .
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v-------------~~~~~~   67 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDL-------------RGIPLD   67 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEEC-------------SSCCCC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEe-------------cccccC
Confidence            57899999999999999987 999999999983   4679999999999999999999984             3211 1


Q ss_pred             CCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEE---ccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645        117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE---LQSVEGEGGQVYYLDGPKGNLATGKKALYLPN  190 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~---L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~  190 (207)
                      ....|.|+|||++.++++++||++.++|.++..+.....|+.   |.+..+.  .      ..|+|.+  ++.|.|.
T Consensus        68 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~--~------~~G~l~l--~~~~~p~  134 (140)
T 2dmh_A           68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ--D------TGATIDL--VIGYDPP  134 (140)
T ss_dssp             TTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC--E------EEEEEEE--EEEECCC
T ss_pred             CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC--C------CCCEEEE--EEEEECC
Confidence            457999999999999999999999999999988888889998   5443322  1      2388888  5557664

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=8.6e-19  Score=132.59  Aligned_cols=120  Identities=33%  Similarity=0.517  Sum_probs=102.6

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      .|..++++.|  ..+.|.|+|++|++|+..+..+.+||||++.+.++.  ...++|++++++.+|.|+|+|.|.+     
T Consensus        19 ~G~l~~~l~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-----   91 (149)
T 1a25_A           19 RGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL-----   91 (149)
T ss_dssp             TCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEEC-----
T ss_pred             ceEEEEEEEe--cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEe-----
Confidence            4777888887  478999999999999999888999999999997643  4588999999999999999999994     


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                              ...+. ...|.|+|||++.++++++||++.++|.++..+ ...+||+|.+.
T Consensus        92 --------~~~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~  140 (149)
T 1a25_A           92 --------KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  140 (149)
T ss_dssp             --------CSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             --------ccccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence                    32222 358999999999998999999999999998665 57899999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.81  E-value=8e-19  Score=147.01  Aligned_cols=127  Identities=50%  Similarity=0.843  Sum_probs=109.1

Q ss_pred             CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      ...|..++++.|++..+.|.|+|++|++|+..+..+.+||||++.+.+++.+.++|++++++.+|.|+|+|.|.      
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~------   77 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS------   77 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE------
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEE------
Confidence            45689999999999999999999999999999988999999999987767788999999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEe-ceeec-cccccceEEEccccC
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA-LCQID-LAQTIEEWRELQSVE  163 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~-L~~l~-~~~~~~~w~~L~~~~  163 (207)
                             ++..++....|.|+|||++.++++++||++.++ +.++. .......|+.|....
T Consensus        78 -------v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~  132 (296)
T 1dqv_A           78 -------VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG  132 (296)
T ss_dssp             -------CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS
T ss_pred             -------ecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccc
Confidence                   454555567899999999999999999999996 43432 234567899998644

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.80  E-value=2.7e-18  Score=133.48  Aligned_cols=129  Identities=32%  Similarity=0.480  Sum_probs=97.6

Q ss_pred             CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645         37 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY  113 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~  113 (207)
                      ...+.|+|+|++|++|+..+..+.+||||++.+.....   ..++|++++++.+|.|+|.|.|.+             ..
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v-------------~~   71 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV-------------LP   71 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEE-------------CT
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEE-------------cC
Confidence            35788999999999999998889999999999964332   578999999999999999999995             21


Q ss_pred             CcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccccc-c-----eEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645        114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-E-----EWRELQSVEGEGGQVYYLDGPKGNLATGKKALY  187 (207)
Q Consensus       114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~-~-----~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~  187 (207)
                         ....|.|+|||++.++++++||++.++|.++..+... .     +|+.|......       ....|+|.+  .+.|
T Consensus        72 ---~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~-------~~~~G~l~l--~l~~  139 (176)
T 3m7f_B           72 ---QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK-------SRVKGYLRL--KMTY  139 (176)
T ss_dssp             ---TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTT-------CCCCSEEEE--EEEE
T ss_pred             ---CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCC-------CccCEEEEE--EEEE
Confidence               3368999999999999999999999999998766433 2     79999875443       125699999  5568


Q ss_pred             ecc
Q psy17645        188 LPN  190 (207)
Q Consensus       188 ~~~  190 (207)
                      .|.
T Consensus       140 ~p~  142 (176)
T 3m7f_B          140 LPK  142 (176)
T ss_dssp             CC-
T ss_pred             EeC
Confidence            887

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=6.7e-19  Score=146.14  Aligned_cols=125  Identities=33%  Similarity=0.547  Sum_probs=107.4

Q ss_pred             cceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCC
Q psy17645         10 KSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLN   87 (207)
Q Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~   87 (207)
                      ..||.|.+.........|...+++.|.+..+.|.|.|++|++|+..+..+.+||||++.+.+++.  .+++|++++++.+
T Consensus       120 ~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~n  199 (284)
T 2r83_A          120 EEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLN  199 (284)
T ss_dssp             EEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSS
T ss_pred             eeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCC
Confidence            56899887654444556889999999999999999999999999998889999999999875443  4689999999999


Q ss_pred             CeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceee
Q psy17645         88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  147 (207)
Q Consensus        88 P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l  147 (207)
                      |.|+|+|.|.             ++..++....|.|+|||++.++++++||++.+++..+
T Consensus       200 P~wne~f~f~-------------v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          200 PYYNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             CEEEEEEEEE-------------CCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             CEEceeEEEe-------------CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence            9999999998             5555555678999999999999999999999999764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.80  E-value=4.2e-18  Score=128.43  Aligned_cols=119  Identities=27%  Similarity=0.419  Sum_probs=99.1

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..+.|+|+|++|++|+..+..+.+||||.+.+   +.+.++|+++.++.+|.|+|.|.|.+             ..   .
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~~~~~t~nP~Wne~f~f~v-------------~~---~   75 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFEC-------------HN---S   75 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCCSCSSCEEEEEEEEEE-------------CS---T
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE---CCEEEECCccCCCCCCCcccEEEEEe-------------cC---C
Confidence            36889999999999999998899999999998   45788999999999999999999985             21   2


Q ss_pred             CceEEEEEEecCCC-----------CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645        118 NKTLVFAIFDFDRF-----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK  184 (207)
Q Consensus       118 ~~~l~i~v~d~~~~-----------~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~  184 (207)
                      ...|.|+|||++..           +.+++||++.++|.++  .....+|++|......       ....|+|.+.+.
T Consensus        76 ~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~-------~~~~G~i~l~l~  144 (148)
T 3kwu_A           76 SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDK-------SAVSGAIRLHIS  144 (148)
T ss_dssp             TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTT-------CCCCCEEEEEEE
T ss_pred             CCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCC-------CCCceEEEEEEE
Confidence            36899999999985           7899999999999998  3456799999865443       124588888444

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=1e-18  Score=128.20  Aligned_cols=107  Identities=21%  Similarity=0.388  Sum_probs=92.0

Q ss_pred             CCEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         39 ANSLSVTVIQAEDLPAL---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~---~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      .+.|.|+|++|++|+..   +..+.+||||++.+.+.....++|++++++.+|.|+|+|.|.+             ..  
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-------------~~--   66 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-------------DP--   66 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEE-------------CT--
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEe-------------cC--
Confidence            57899999999999984   4468899999999865445789999999999999999999994             21  


Q ss_pred             CCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                      .....|.|+|||++.++ +++||++.++|.++..+.....|++|.+
T Consensus        67 ~~~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T 1rlw_A           67 NQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  111 (126)
T ss_dssp             TSCCEEEEEEEECCSSC-CEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred             CCCCEEEEEEEECCCCC-CceeEEEEEEHHHccCCCcEEEEEEcCC
Confidence            13578999999999874 8899999999999988888889999975

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.78  E-value=1.2e-18  Score=133.62  Aligned_cols=106  Identities=23%  Similarity=0.314  Sum_probs=89.7

Q ss_pred             CcCCEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645         37 FNANSLSVTVIQAEDLPALDM----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEV  106 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~~----------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~  106 (207)
                      ...+.|+|+|++|++|+..+.          .+.+||||++.+  .+.+..+|++++++.+|.|||+|.|.+        
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l--~~~~~~kT~v~~ktlnP~WNE~F~f~v--------   95 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKPTYNEEFCANV--------   95 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEEE--------
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE--CCEeeEEeeecCCCCCCccCcEEEEEc--------
Confidence            356789999999999998762          367999999998  344567999999999999999999984        


Q ss_pred             eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc----cccceEEEccc
Q psy17645        107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA----QTIEEWRELQS  161 (207)
Q Consensus       107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~----~~~~~w~~L~~  161 (207)
                           +    ....|.|+|||.+.++++++||++.++|.++..+    ...+.|++|.+
T Consensus        96 -----~----~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A           96 -----T----DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             -----E----EECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS
T ss_pred             -----C----CCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC
Confidence                 2    1258999999999999999999999999998755    56789999964

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.76  E-value=3.1e-18  Score=127.29  Aligned_cols=122  Identities=24%  Similarity=0.343  Sum_probs=99.9

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      ..+.|+|+|++|++|+..+..+.+||||++.+.   .+.++|++++ ++.+|.|+|+|.|.+             .  + 
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v-------------~--~-   68 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTV-------------S--E-   68 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEE-------------E--S-
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEE-------------C--C-
Confidence            457899999999999999888999999999983   3568999998 899999999999995             2  1 


Q ss_pred             CCceEEEEEEecCCCCCCceeEEEEEeceee-ccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645        117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-DLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN  190 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l-~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~  190 (207)
                      ....|.|+|||++.++++++||++.++|.++ ..+.....|++|. ..+   .      ..|+|.+  .+.|.|.
T Consensus        69 ~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~------~~G~i~l--~l~~~p~  131 (136)
T 1wfj_A           69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---E------YKGEIWV--ALSFKPS  131 (136)
T ss_dssp             SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---E------EEEEEEE--EEEEEEC
T ss_pred             CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---c------cCEEEEE--EEEEEeC
Confidence            4579999999999999999999999999998 4445567899998 211   1      2388888  4456664

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.76  E-value=1.7e-17  Score=122.92  Aligned_cols=122  Identities=19%  Similarity=0.300  Sum_probs=96.8

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN  118 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~  118 (207)
                      ...|+|+|++|++|...+..|.+|||+++.+.+. .+.++|+++.++.+|.|+|+|.|.+             ..    .
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v-------------~~----~   65 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYV-------------GK----T   65 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEE-------------ET----T
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEe-------------CC----C
Confidence            3579999999999999998899999999998432 4789999999999999999999984             21    1


Q ss_pred             ceEEEEEEecCCCCC---CceeEEEEEeceee-ccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645        119 KTLVFAIFDFDRFSK---HDQIGEVKVALCQI-DLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK  183 (207)
Q Consensus       119 ~~l~i~v~d~~~~~~---~~~lG~~~v~L~~l-~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~  183 (207)
                      ..|.|+|||++.+++   +++||++.+++.++ .......+|++|........     ....|+|.+.+
T Consensus        66 ~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~-----~~~~G~i~v~l  129 (132)
T 3pyc_A           66 DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDT-----DAVRGQIVVSL  129 (132)
T ss_dssp             CCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCC-----CCCCSEEEEEE
T ss_pred             CEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCC-----CceeEEEEEEE
Confidence            359999999998876   78999999999987 33445568999986432211     13468888844

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.74  E-value=1.1e-17  Score=124.68  Aligned_cols=104  Identities=19%  Similarity=0.360  Sum_probs=86.4

Q ss_pred             CCEEEEEEEEeeCCCCCCCCC-----------CCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccccccee
Q psy17645         39 ANSLSVTVIQAEDLPALDMGG-----------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVF  107 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g-----------~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~  107 (207)
                      .+.|+|+|++|++|+..+..+           .+||||++.+  .+....+|+++.++.+|.|||+|.|.+         
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l--~~~~~~~T~~~~~t~nP~WnE~f~f~v---------   73 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTDV---------   73 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEEE---------
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEE--CCeEeeeeeEECCCcCCccCCEEEEEe---------
Confidence            578999999999999876433           3999999998  344557899999999999999999984         


Q ss_pred             ccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc--ccceEEEccc
Q psy17645        108 EQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQS  161 (207)
Q Consensus       108 ~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~--~~~~w~~L~~  161 (207)
                          +  +  ...|.|+|||++.++++++||++.++|.++..+.  ..+.|++|.+
T Consensus        74 ----~--~--~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~  121 (136)
T 1gmi_A           74 ----C--N--GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             ----E--E--ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             ----c--C--CCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC
Confidence                2  1  1689999999999999999999999999987643  3478998863

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.74  E-value=1.5e-18  Score=145.44  Aligned_cols=149  Identities=29%  Similarity=0.404  Sum_probs=118.5

Q ss_pred             CCcceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCC
Q psy17645          8 SKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKT   85 (207)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t   85 (207)
                      ....||.|.+... .....|...+++.|.+..+.|.|.|++|++|+..+..|.+||||++.+.+++.  .+++|++++++
T Consensus       121 ~~~~w~~L~~~~~-~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t  199 (296)
T 1dqv_A          121 DRPLWRDILEGGS-EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT  199 (296)
T ss_dssp             SCCCCEECBCCSS-CCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSC
T ss_pred             cceeeeccccccc-cccccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCC
Confidence            3456898877532 23445889999999999999999999999999998889999999999875443  57899999999


Q ss_pred             CCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645         86 LNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus        86 ~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                      .+|.|||.|.|.             ++..++....|.|+|||++.++++++||++.+++.++.. ....+|+++...+++
T Consensus       200 ~nP~wne~f~f~-------------v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~  265 (296)
T 1dqv_A          200 LNPTYNEALVFD-------------VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRK  265 (296)
T ss_dssp             SSCEEEECCCCC-------------CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSS
T ss_pred             CCCeECceEEEE-------------cCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCC
Confidence            999999999998             454455556899999999999999999999999987532 134566666655555


Q ss_pred             CceEEe
Q psy17645        166 GGQVYY  171 (207)
Q Consensus       166 ~~~~~~  171 (207)
                      ....|+
T Consensus       266 ~~~~w~  271 (296)
T 1dqv_A          266 PVEHWH  271 (296)
T ss_dssp             CSCSCC
T ss_pred             ceeEee
Confidence            555554

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.72  E-value=8.2e-17  Score=147.41  Aligned_cols=141  Identities=23%  Similarity=0.302  Sum_probs=111.9

Q ss_pred             CCCcceeEeeeecccccCCCCCceeEEE-EECcCCEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEECC--CCceEEeee
Q psy17645          7 YSKKSFYLLNLKVLLTDLPIFKPEQTLE-YDFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPD--KKKKFETKV   81 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~-y~~~~~~L~V~I~~a~nL~~~~~--~g~~dpyv~v~l~~~--~~~~~~T~~   81 (207)
                      .|++.+|+|||+.++.....++|..... .....+.|+|+|++|++|+..+.  .+.+||||++.+...  ...+++|++
T Consensus       463 ~ng~~GYvlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkv  542 (624)
T 1djx_A          463 DNGGCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV  542 (624)
T ss_dssp             SGGGCSEEECCGGGGCTTCCCCTTSCCSSTTCCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCC
T ss_pred             cCCCCccEECCHHHcCCCCCcCcccccccCCccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeeccc
Confidence            3789999999999998766666642111 01246789999999999998873  688999999999532  336889999


Q ss_pred             ecCC-CCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645         82 HRKT-LNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus        82 ~~~t-~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                      ++++ .+|.|||+|.|.+             ...++  ..|.|.|||++.++++++||++.++|..+..+   -+|++|.
T Consensus       543 i~~ng~NP~WnE~f~F~v-------------~~~el--~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~  604 (624)
T 1djx_A          543 ITNNGFNPRWDMEFEFEV-------------TVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLL  604 (624)
T ss_dssp             CTTCSSSCEEEEEEEEEE-------------SCGGG--CEEEEEEEECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEE
T ss_pred             ccCCCCCCccCceEEEEE-------------ecCCC--CEEEEEEEEcCCCCCCceeEEEEEEHHHcCCC---cEEEeCC
Confidence            9987 9999999999985             32232  68999999999999999999999999998655   3589998


Q ss_pred             ccCCC
Q psy17645        161 SVEGE  165 (207)
Q Consensus       161 ~~~~~  165 (207)
                      +..++
T Consensus       605 d~~g~  609 (624)
T 1djx_A          605 SKNGD  609 (624)
T ss_dssp             CTTSC
T ss_pred             CCCcC
Confidence            76554

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.70  E-value=2.3e-16  Score=122.61  Aligned_cols=123  Identities=16%  Similarity=0.138  Sum_probs=95.3

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   .+.++|++++++.+|.|+|+|.|.+             .    .
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v-------------~----~   93 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIV-------------T----P   93 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEE-------------C----T
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEe-------------C----C
Confidence            567899999999999944445559999999983   3889999999999999999999984             2    2


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeecccc-----ccceEEEccccCCCCceEEeecCCCCceeeeceeeeec
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-----TIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLP  189 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~-----~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~  189 (207)
                      ...|.|+|||++.++.+++||++.++|.++..+.     ....|++|..... ..      ...|+|.+  .+.+++
T Consensus        94 ~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~------~~~G~L~v--~l~~l~  161 (173)
T 2nq3_A           94 VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PT------ETIGDLSI--CLDGLQ  161 (173)
T ss_dssp             TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TT------SEEEEEEE--EEESEE
T ss_pred             CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CC------cccEEEEE--EEeeee
Confidence            5789999999999999999999999999885432     2257999987522 11      12378877  444443

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.63  E-value=3.7e-15  Score=132.94  Aligned_cols=120  Identities=28%  Similarity=0.455  Sum_probs=100.2

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..+.|.|+|++|++|+..+..|.+||||++.+   +...++|+++.++.+|.|+|+|.|.+             .  ...
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~---~~~~~~T~~~~~t~nP~w~e~f~f~~-------------~--~~~  446 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWNFNCQFFI-------------K--DLY  446 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCSSCSSCEEEEEEEEEE-------------S--CTT
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEE---CCeeccCCccCCCCCCccCceEEEEe-------------c--CCC
Confidence            45689999999999999998999999999998   45789999999999999999999985             2  224


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccccc----cceEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT----IEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALY  187 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~----~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~  187 (207)
                      ...|.|+|||++.++++++||++.++|.++..+..    ...|+.|...            ..|+|.+.+.+..
T Consensus       447 ~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------------~~G~i~l~~~l~l  508 (510)
T 3jzy_A          447 QDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------------PTGEVWVRFDLQL  508 (510)
T ss_dssp             TCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------------SSCEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------------CCceEEEEEEEEE
Confidence            46899999999999999999999999999876543    6789998754            2377777666544

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.57  E-value=2e-14  Score=106.60  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=70.2

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      .+.|.|+|.+|+++..   .+.+||||++..     +..+|+++. ++.+|.|||.|.|.+             +.   .
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~v-------------~~---~   59 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKV-----QNVKSTTIAVRGSQPSWEQDFMFEI-------------NR---L   59 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEEE-------------CC---C
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEEe-----cCEEEeEecCCCCCceECCEEEEEE-------------eC---C
Confidence            4679999999998852   678999999982     334555554 689999999999995             21   3


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  150 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~  150 (207)
                      ...|.|+|||++ +.+|++||++.++|.++...
T Consensus        60 ~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           60 DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             SSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBC
T ss_pred             CCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhc
Confidence            357999999999 88999999999999998543

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.53  E-value=1.5e-14  Score=134.15  Aligned_cols=109  Identities=22%  Similarity=0.394  Sum_probs=95.3

Q ss_pred             cCCEEEEEEEEeeCCCC---CCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         38 NANSLSVTVIQAEDLPA---LDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~---~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      ..+.|.|+|++|++|+.   .+..|.+||||++.+.+....+++|++++++.+|.|||+|.|.+             .  
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v-------------~--   80 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-------------D--   80 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEE-------------C--
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEe-------------c--
Confidence            57899999999999998   66678999999999865445789999999999999999999995             2  


Q ss_pred             cCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                      ......|.|+|||++.++ +++||++.++|.++..+....+|+.|.+.
T Consensus        81 ~~~~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           81 PNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             TTSCCBCEEEEEECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCCCEEEEEEEECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            123468999999999988 99999999999999888888999999864

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.52  E-value=9.3e-14  Score=103.71  Aligned_cols=121  Identities=21%  Similarity=0.271  Sum_probs=98.2

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      ..-|+|.|.+|.+|+     |.+||++++.+   .+.+++|++++ ++.+|.|||.|.|++             ......
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~F---Rg~k~kTkvi~~~~~npvfnE~F~wpl-------------~~~ld~   78 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWPV-------------ASSIDR   78 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEE---TTEEEECCCEEEECSCEEEEEEEEEEE-------------SSCCCT
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEE---eccceeeEEeccCCCCceEcceEEecC-------------CCCCCC
Confidence            456999999999998     47899999999   56899999998 699999999999995             324457


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN  190 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~  190 (207)
                      +..|.|.|+|++++.++++||.+.++|.++........+-.|.+......        .++|.+  .+.|.|.
T Consensus        79 ~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~--------~a~I~l--~l~Y~pp  141 (144)
T 3l9b_A           79 NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAII--------KTSLSM--EVRYQAA  141 (144)
T ss_dssp             TCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEE--------EEEEEE--EEEEEET
T ss_pred             CCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCcc--------ccEEEE--EEEecCC
Confidence            78999999999999999999999999999987776767777776555421        134555  5557764

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.51  E-value=1.8e-13  Score=123.21  Aligned_cols=99  Identities=25%  Similarity=0.298  Sum_probs=83.6

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.|.|+|++|++|+. +..|.+||||++.+.   .+.++|++++++++|.|+|+|.|.+            ....  ...
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~------------~~~~--~~~  455 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFEN------------VLLS--TGG  455 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEE------------EETT--TCC
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEE------------ecCC--CCC
Confidence            579999999999998 888999999999983   4679999999999999999999984            2111  356


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                      .|.|+|||+|....|++||++.++|..   + ....|+.|.
T Consensus       456 ~L~~~V~D~D~~~~dD~LG~~~~~L~~---g-~~~~~~~l~  492 (540)
T 3nsj_A          456 PLRVQVWDADYGWDDDLLGSCDRSPHS---G-FHEVTCELN  492 (540)
T ss_dssp             CEEEEEEECCSSSCCEEEEEEEECCCS---E-EEEEEEECS
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEeeC---C-cEEEEEEcC
Confidence            899999999999999999999999873   2 356788764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.51  E-value=1.1e-13  Score=130.41  Aligned_cols=134  Identities=25%  Similarity=0.348  Sum_probs=99.5

Q ss_pred             CCCcceeEeeeecccccCCCCCceeEEEEE-CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC--CC-CceEEeeee
Q psy17645          7 YSKKSFYLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DK-KKKFETKVH   82 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~-~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~--~~-~~~~~T~~~   82 (207)
                      .|++.+|+|||+.++.....++|...-... .....|.|+|++|++|+..    .+||||++.+..  .+ ..+++|+++
T Consensus       691 ~nG~cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi  766 (885)
T 3ohm_B          691 YNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTS  766 (885)
T ss_dssp             TGGGCSEEECCGGGTCTTCCCCTTCSSCCTTCCCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCC
T ss_pred             cCCceeeeecCHHHcCCCcCcCCCcCcccCcccceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEe
Confidence            489999999999999877677764211100 1234799999999999853    589999999963  22 235799998


Q ss_pred             cC-CCCCeEec-EEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645         83 RK-TLNPVFNE-TFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus        83 ~~-t~~P~w~e-~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                      .+ +++|.||| +|.|..            +...+  ...|.|.|||++    ++++|++.+||..+..|   -++.+|.
T Consensus       767 ~~NglNPvWnEe~F~F~~------------V~~pe--la~Lrf~V~D~d----ddfiG~~~lpL~~L~~G---yR~vpL~  825 (885)
T 3ohm_B          767 QGNSFNPVWDEEPFDFPK------------VVLPT--LASLRIAAFEEG----GKFVGHRILPVSAIRSG---YHYVCLR  825 (885)
T ss_dssp             SSCSSSCBCCCCCEEEEE------------ESCGG--GCEEEEEEEETT----TEEEEEEEEETTTCCCE---EEEEEEE
T ss_pred             eCCCcCCeeccceeEEee------------EEcCC--cCEEEEEEEcCC----ccEEeeEEEEHHHcCCC---ceEEEec
Confidence            75 69999999 699982            22223  258999999987    68999999999998655   2356776


Q ss_pred             ccCCC
Q psy17645        161 SVEGE  165 (207)
Q Consensus       161 ~~~~~  165 (207)
                      +..++
T Consensus       826 ~~~g~  830 (885)
T 3ohm_B          826 NEANQ  830 (885)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence            65554

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.51  E-value=9e-14  Score=130.31  Aligned_cols=133  Identities=26%  Similarity=0.382  Sum_probs=99.6

Q ss_pred             CCCcceeEeeeecccccCCCCCceeEEEEE-CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC--CC-CceEEee-e
Q psy17645          7 YSKKSFYLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DK-KKKFETK-V   81 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~-~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~--~~-~~~~~T~-~   81 (207)
                      .|++.+|+|||+.++.....++|.-.-..+ ...+.|.|.|++|++|+.    +.+||||++.+..  .+ .++++|+ +
T Consensus       644 ~nG~cGYVlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~v  719 (799)
T 2zkm_X          644 FNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLS  719 (799)
T ss_dssp             TGGGCSEEECCGGGTCTTSCCCTTSCCTTTTTTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCC
T ss_pred             ccCCCCceECCHHHhCCCccCCCcccccccceeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeeccc
Confidence            589999999999999876666664111101 135589999999999985    3689999999953  22 2468999 7


Q ss_pred             ec-CCCCCeEec-EEEE-eeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEE
Q psy17645         82 HR-KTLNPVFNE-TFVF-KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE  158 (207)
Q Consensus        82 ~~-~t~~P~w~e-~~~f-~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~  158 (207)
                      +. ++.+|.||| .|.| .+             ...++  ..|.|.|||++    ++++|++.+||..+..|   -+|.+
T Consensus       720 v~~n~~NPvWnEe~f~F~~v-------------~~~el--~~Lr~~V~D~d----~d~iG~~~ipl~~L~~G---~r~v~  777 (799)
T 2zkm_X          720 PSTNSINPVWKEEPFVFEKI-------------LMPEL--ASLRVAVMEEG----NKFLGHRIIPINALNSG---YHHLC  777 (799)
T ss_dssp             SSSCCSSCBCCCCCEEEEEE-------------SSGGG--CEEEEEEEETT----TEEEEEEEEEGGGBCCE---EEEEE
T ss_pred             ccCCCCCCeeecceEEEEEE-------------ccCCc--cEEEEEEEEeC----CCccceEeeehhhcCCC---cEEEe
Confidence            76 569999999 7999 63             33333  48999999987    68999999999998654   35777


Q ss_pred             ccccCCC
Q psy17645        159 LQSVEGE  165 (207)
Q Consensus       159 L~~~~~~  165 (207)
                      |.+..++
T Consensus       778 L~~~~g~  784 (799)
T 2zkm_X          778 LHSESNM  784 (799)
T ss_dssp             EECTTCC
T ss_pred             ccCCCCC
Confidence            7754443

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.50  E-value=1.5e-13  Score=128.60  Aligned_cols=134  Identities=25%  Similarity=0.312  Sum_probs=100.5

Q ss_pred             CCCcceeEeeeecccccCCCCCceeEEEEE-CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECC--CC--ceEEeee
Q psy17645          7 YSKKSFYLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KK--KKFETKV   81 (207)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~-~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~--~~--~~~~T~~   81 (207)
                      .|++.+|+|||+.++.....++|......+ .....|.|+|++|++|+..    .+||||++.+...  +.  ++++|++
T Consensus       616 ~nG~cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkv  691 (816)
T 3qr0_A          616 YNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKI  691 (816)
T ss_dssp             TTTTCSEEECCHHHHCTTCCCCTTCCSCCTTSCCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCC
T ss_pred             cCCceeeeecChHhcCCCcccCCCCCCCcCCccceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEE
Confidence            489999999999999876667764211111 1246799999999999853    5899999999632  22  5679999


Q ss_pred             ecC-CCCCeEecE-EEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645         82 HRK-TLNPVFNET-FVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  159 (207)
Q Consensus        82 ~~~-t~~P~w~e~-~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L  159 (207)
                      +.+ ++||.|||. |.|..            +...++  ..|.|.|||++    ++++|++.++|..+..|.   ++.+|
T Consensus       692 v~~nglNPvWNE~~F~F~~------------v~~pel--a~Lrf~V~D~d----ddfiG~~~ipL~~L~~Gy---R~vpL  750 (816)
T 3qr0_A          692 IENNGMDPYYDEKVFVFKK------------VVLPDL--AVVRIIVSEEN----GKFIGHRVMPLDGIKPGY---RHVPL  750 (816)
T ss_dssp             BCSCSSCCBCCCCCEEEEE------------ESCGGG--CEEEEEEEETT----SCEEEEEEEESTTCCCEE---EEEEE
T ss_pred             ecCCCCCCeEcCceeEEcc------------ccCCCc--cEEEEEEEecC----CCeeeEEEEEHHHcCCcc---eEEEE
Confidence            875 699999997 99972            222232  58999999985    689999999999987652   46777


Q ss_pred             cccCCC
Q psy17645        160 QSVEGE  165 (207)
Q Consensus       160 ~~~~~~  165 (207)
                      .+..++
T Consensus       751 ~~~~g~  756 (816)
T 3qr0_A          751 RNESNR  756 (816)
T ss_dssp             ECTTSC
T ss_pred             eCCCCC
Confidence            765554

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.49  E-value=1.5e-13  Score=106.14  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=70.7

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      .+.|.|+|.+|+++.   ..+.+||||++..     +..+|+++. ++.+|.|||+|.|.+             .  + .
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~v-------------~--~-~   68 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLKV-----QNVESTTIAVRGSQPSWEQDFMFEI-------------N--R-L   68 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEEC-------------C--C-T
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEEe-----cceEEEEecCCCCCCCCCCEEEEEe-------------e--C-C
Confidence            468999999999884   2678999999982     345666655 689999999999994             3  1 3


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  150 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~  150 (207)
                      ...|.|+|||++ +..|++||++.++|.++...
T Consensus        69 ~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           69 DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             TSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBC
T ss_pred             CCEEEEEEEECC-CCCCceEEEEEEEHHHhccc
Confidence            357999999999 88899999999999998543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.42  E-value=1e-12  Score=121.37  Aligned_cols=118  Identities=33%  Similarity=0.570  Sum_probs=100.3

Q ss_pred             eeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccccee
Q psy17645         30 EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVF  107 (207)
Q Consensus        30 ~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~  107 (207)
                      .+.+.+....+.|.|.+.+|++|...+..|.+|||+++.+.+..  ..+++|++++.+.+|.|+|+|.|.+         
T Consensus       162 ~i~~~~~~~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~---------  232 (674)
T 3pfq_A          162 RIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL---------  232 (674)
T ss_dssp             EEEEEEEECSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEEC---------
T ss_pred             cccccceeccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeec---------
Confidence            45566666789999999999999999999999999999997654  3578999999999999999999984         


Q ss_pred             ccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        108 EQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       108 ~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                          ...+ ....+.++|||++..++++++|.+.+++.++... ...+|+.|...
T Consensus       233 ----~~~~-~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls~  281 (674)
T 3pfq_A          233 ----KESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  281 (674)
T ss_dssp             ----CSTT-TTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBCT
T ss_pred             ----ccCC-ccceeeeEEeecccccccccccccccchhhhccC-Ccccceeeccc
Confidence                3233 3457999999999999999999999999998654 46899999764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.36  E-value=5.4e-14  Score=125.32  Aligned_cols=102  Identities=21%  Similarity=0.312  Sum_probs=14.0

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCC---CCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKT---LNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t---~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      .+.|+|+|++|++|+..+     ||||++.+.  +....+|++++++   .+|.|||+|.|.+            .+.  
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~~------------~~~--   68 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFNN------------LPA--   68 (483)
T ss_dssp             EECC----------------------------------------------------CCEECC------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEec------------CCC--
Confidence            467999999999998875     999999983  3446799999998   9999999999985            331  


Q ss_pred             CCCceEEEEEEec-C---CCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645        116 AMNKTLVFAIFDF-D---RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus       116 ~~~~~l~i~v~d~-~---~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                        ...+.++|||. +   ..+++++||++.+++.++..+....+|++|....
T Consensus        69 --~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~  118 (483)
T 3bxj_A           69 --VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPT  118 (483)
T ss_dssp             ----------------------------------------CCEECC------
T ss_pred             --ccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCC
Confidence              36889999994 4   3678899999999999998888889999997543

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.57  E-value=6.8e-07  Score=64.86  Aligned_cols=100  Identities=17%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEe-eeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFET-KVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T-~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      ..-|||.+.++.--..+......|||+.+.+.  ...   ..+| .+.+.|..|.|++.|...+             .  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vd--E~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V-------------~--   67 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMK--EALSTERGKTLVQKKPTMYPEWKSTFDAHI-------------Y--   67 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEE--EEEEETTEEEEECCSCCBCCCTTCEEEEEC-------------C--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEee--eeEEcccceeecccCCCCCcCccceEEeee-------------e--
Confidence            34477777555422222223568999999883  111   2244 6677899999999998884             2  


Q ss_pred             cCCCceEEEEEEecCCCCCCceeEEEEEeceeecc-----ccccceEEEccc
Q psy17645        115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQS  161 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~-----~~~~~~w~~L~~  161 (207)
                        ....|.+.|++...    +|++.|.+++.++..     +...+.|.+|.+
T Consensus        68 --~Gr~l~i~Vfh~a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP  113 (126)
T 1yrk_A           68 --EGRVIQIVLMRAAE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP  113 (126)
T ss_dssp             --TTCEEEEEEEEETT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred             --CCEEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence              56799999997765    899999999999863     334568999986

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.50  E-value=9.8e-07  Score=64.87  Aligned_cols=98  Identities=18%  Similarity=0.259  Sum_probs=70.6

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCc---eEEe-eeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         41 SLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKK---KFET-KVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~---~~~T-~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      -|||.+.+..--+.+. .....|||+.+.+.  ...   ..+| .+.+.|..|.|++.|...+             .   
T Consensus        11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~Vd--E~~~te~gqtl~~KkkT~~P~Wne~Fd~~V-------------~---   72 (138)
T 2enj_A           11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVK--EYVESENGQMYIQKKPTMYPPWDSTFDAHI-------------N---   72 (138)
T ss_dssp             CEEEEEEEEECCCCCCSCCCCCCCEEEEEEE--EEEEETTEEEEEEEEEEECCCSSSEEEECC-------------C---
T ss_pred             ceEEEeeccccCCCCCcccccCCceEEEEee--eeeeccCceeecccCCCCCccccceEeeeE-------------E---
Confidence            4677776554333221 13468999999883  221   2566 6667799999999998884             2   


Q ss_pred             CCCceEEEEEEecCCCCCCceeEEEEEeceeecc-----ccccceEEEccc
Q psy17645        116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQS  161 (207)
Q Consensus       116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~-----~~~~~~w~~L~~  161 (207)
                       ....|.|.|++...    +|++.|.+++.+|..     +...+.|.+|.+
T Consensus        73 -~Gr~l~i~Vfh~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP  118 (138)
T 2enj_A           73 -KGRVMQIIVKGKNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP  118 (138)
T ss_dssp             -SSCEEEEEEECSSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS
T ss_pred             -CCeEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence             55799999996654    899999999999863     345578999986

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.91  E-value=0.85  Score=35.97  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC----CCCceeEEEEEecee
Q psy17645         76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALCQ  146 (207)
Q Consensus        76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~----~~~~~lG~~~v~L~~  146 (207)
                      .++|.+...+.+|.|+|++.+.             +|.+......|.|++++...-    ..+..+|-+.+||..
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~-------------LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVA-------------IPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEE-------------ECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEe-------------eChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            5677777788999999999998             787878889999999875421    122468999999865

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.13  E-value=1.3  Score=42.17  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      -...+.|+|..+.++...   ...+.||.+.+..++.   ....|..+....+|.|||.+.|++.            -.+
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~------------i~d  279 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDIS------------VCD  279 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEE------------GGG
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccc------------ccc
Confidence            345799999999988654   3567898888753332   2345555555678999999999851            112


Q ss_pred             cCCCceEEEEEEecCCC--C----------CCceeEEEEEeceee
Q psy17645        115 DAMNKTLVFAIFDFDRF--S----------KHDQIGEVKVALCQI  147 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~--~----------~~~~lG~~~v~L~~l  147 (207)
                      -+....|+|.+|+...-  +          .+..+|-+.++|-+.
T Consensus       280 LPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          280 LPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             CCTTCEEEEEEEEEC----------------CEEEEEEEEESBCT
T ss_pred             CCcccEEEEEEEEecCCccCccccccccccccceEEEEeeeEECC
Confidence            23567999999986321  1          234889999988764

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=90.12  E-value=1.4  Score=32.80  Aligned_cols=117  Identities=15%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             CcCCEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         37 FNANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        37 ~~~~~L~V~I~~a~nL~~~~--~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      +..+.+.++|.++.- .+..  ..+..+|...+.+.--+...+.|.+.. ..+|.++-+..|.+..++-..        .
T Consensus        15 ~gEnlfEihi~~~~~-~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl--------~   84 (156)
T 2yrb_A           15 RGENLFEIHINKVTF-SSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFL--------Q   84 (156)
T ss_dssp             SSCEEEEEEEEEECC-CHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHH--------H
T ss_pred             CCCcEEEEEEeEEEE-cHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHH--------H
Confidence            356678888888752 2111  123457777777654566788888877 578999988888741111000        1


Q ss_pred             cCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccc-cceEEEccccCC
Q psy17645        115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-IEEWRELQSVEG  164 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-~~~w~~L~~~~~  164 (207)
                      .+....+.++++.... ..-+.+|.++++|..+...+. ...-..|.+..+
T Consensus        85 yL~~~~l~lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g  134 (156)
T 2yrb_A           85 YIQKNTITLEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG  134 (156)
T ss_dssp             HHHHCCEEEEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS
T ss_pred             HHhcCCEEEEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC
Confidence            1245688899988753 445789999999999764433 445556665444

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=87.74  E-value=5.9  Score=38.34  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      -...++|+|..+.++.... ....+.||.+.+.-++..   ...|+.+. ..++.|||.+.|++            .-..
T Consensus       353 ~~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i------------~i~d  418 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDI------------YIPD  418 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEE------------EGGG
T ss_pred             CCCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecC------------cccc
Confidence            3457899999998876432 335678999988643332   33444444 34677999999986            1112


Q ss_pred             cCCCceEEEEEEecCCC----CCCceeEEEEEeceee
Q psy17645        115 DAMNKTLVFAIFDFDRF----SKHDQIGEVKVALCQI  147 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~----~~~~~lG~~~v~L~~l  147 (207)
                      -+....|+|.||+....    ..+..+|-+.++|-+.
T Consensus       419 LPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          419 LPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCTTCEEEEEECCCCCCC-------CCEEEEEESBCT
T ss_pred             CChhcEEEEEEEEecCccCcccccceeEEeeeeeEcc
Confidence            23568999999986542    1234799999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-35
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-32
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	9e-32
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-29
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-27
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	6e-27
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-26
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-26
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-26
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	9e-26
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-25
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	7e-22
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	6e-20
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-17
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	5e-16
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-14
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-13
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	3e-12
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-11
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-10

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (301), Expect = 2e-35
 Identities = 83/130 (63%), Positives = 95/130 (73%), Gaps = 13/130 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
           +L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 26  SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           E F FK             VPY++   KTLV A++DFDRFSKHD IGE KV +  +D   
Sbjct: 86  EQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132

Query: 152 TIEEWRELQS 161
             EEWR+LQS
Sbjct: 133 VTEEWRDLQS 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-32
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNPV 89
            L +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K    TK  +KTL P 
Sbjct: 6   KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQI 147
           +N+TF++              V   +   + L   ++D  R  +   + +GE+ + L   
Sbjct: 66  WNQTFIYSP------------VHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113

Query: 148 DLAQTIEEWRELQ 160
            L      W +LQ
Sbjct: 114 LLDDE-PHWYKLQ 125

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 9e-32
 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 14/132 (10%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
           +LEY+F   +  V + +A  LPA+D    TSDPY+K+ +LP+KK K +T+V RKTL+P F
Sbjct: 14  SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           +ETF F              +PY       L F I  FDRFS+ D IGEV + L  I+L+
Sbjct: 74  DETFTFYG------------IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121

Query: 151 Q-TIEEWRELQS 161
           +  +   RE+ S
Sbjct: 122 EGKMLMNREIIS 133

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 1e-29
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
           +L Y    N+L+V V++A  LP  D+ G SDPYVKV L   KK+  K +T V + T N V
Sbjct: 7   SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 66

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE FVF              +P       ++ F + D +R S+++ IG + +       
Sbjct: 67  FNELFVFD-------------IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT--AE 111

Query: 150 AQTIEEWRELQS 161
                 W+E+  
Sbjct: 112 GSGGGHWKEICD 123

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.6 bits (245), Expect = 3e-27
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 18/137 (13%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNPV 89
            ++   +   L V V  A++L  +D  G SDPYVK+ L+PD K +   +TK  + +LNP 
Sbjct: 7   YIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 66

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NETF F++                   ++ L   I+D+D  S++D +G +   + ++  
Sbjct: 67  WNETFRFQLKE--------------SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112

Query: 150 AQTIEEWRELQSV-EGE 165
           A  ++ W +L S  EGE
Sbjct: 113 AG-VDGWFKLLSQEEGE 128

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.0 bits (243), Expect = 6e-27
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 17/136 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPV 89
           +L Y      L V +I+   L A+D  G SDP+VK++L PD   K K +T++ +KTLNP 
Sbjct: 7   SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           FNE F +              + ++D   K+L  +++D+D    +D IG  ++ +     
Sbjct: 67  FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AK 111

Query: 150 AQTIEEWRELQSVEGE 165
            + ++ W E    + +
Sbjct: 112 GERLKHWYECLKNKDK 127

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 4e-26
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVF 90
            L+YD     L VT ++A      +  G  D YV+  +       + +T + ++ L+  +
Sbjct: 18  CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
            E  V  +                +    TL   +   DRFS+H   GE+++ L    + 
Sbjct: 75  EEGLVLPL-------------AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121

Query: 151 QTIEEWRELQSVEGEGG 167
               +W EL++     G
Sbjct: 122 LGAAQWGELKTSGPSSG 138

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.7 bits (237), Expect = 6e-26
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 23/140 (16%)

Query: 33  LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK-----------KKKFETKV 81
           L+ +++  +L + ++QA +L   D  G SDP+VKVYLLP +           + K  TK 
Sbjct: 11  LQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY 70

Query: 82  HRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 141
            +K+LNP +N+T ++K             +     M KTL   ++D+DRFS +D +GEV 
Sbjct: 71  VQKSLNPEWNQTVIYKS------------ISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118

Query: 142 VALCQIDLAQTIEEWRELQS 161
           + L           W  L+ 
Sbjct: 119 IDLSSTSHLDNTPRWYPLKE 138

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.0 bits (238), Expect = 6e-26
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 27/146 (18%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKF--ETKVHRKTLNPV 89
           +L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K+    +T + + TLNP 
Sbjct: 17  SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NE+F F+             VP+       +V  + D+D+  K+D IG+V V       
Sbjct: 77  YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123

Query: 150 A------------QTIEEWRELQSVE 163
                        + I +W  LQ  E
Sbjct: 124 ELRHWSDMLANPRRPIAQWHTLQVEE 149

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.6 bits (234), Expect = 9e-26
 Identities = 62/132 (46%), Positives = 82/132 (62%), Gaps = 15/132 (11%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
            L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 10  ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 69

Query: 92  ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
           ETF F              VP A+   + L F+++DFDRFS+HD IG+V +        Q
Sbjct: 70  ETFQFS-------------VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 116

Query: 152 TIEE--WRELQS 161
             +   WR++  
Sbjct: 117 PPDRPLWRDILE 128

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.7 bits (232), Expect = 3e-25
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 32  TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
           +L Y   A  L+VT+I+A +L A+D+ G SDPYVK  L+ + +  KK +T + + TLNP 
Sbjct: 12  SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPT 71

Query: 90  FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
           +NE  VF              V      N  L  A+ D+D    ++ IG  +V     D 
Sbjct: 72  YNEALVFD-------------VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP 118

Query: 150 AQTIEEWRELQS 161
               E W E+ +
Sbjct: 119 -HGREHWAEMLA 129

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 7e-22
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 19/127 (14%)

Query: 39  ANSLSVTVIQAEDLP---ALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV 95
           ++  +V V++A  +      DM  T DPYV++++      +  T+     +NPV+NETF 
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61

Query: 96  FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155
           F                        L   + D +     + +G     +  + + +  E 
Sbjct: 62  F---------------ILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEV 105

Query: 156 WRELQSV 162
                 V
Sbjct: 106 PFIFNQV 112

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.8 bits (196), Expect = 6e-20
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 19/131 (14%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V ++ A+ L   D     DPYV++      +K            P +NETF+F VS  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSEG 69

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE-EWRELQ 160
                 +                IFD D  ++ D +GE  + L  + +  +I      + 
Sbjct: 70  TTELKAK----------------IFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113

Query: 161 SVEGEGGQVYY 171
             E   G+++ 
Sbjct: 114 KDEEYKGEIWV 124

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.6 bits (180), Expect = 1e-17
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 23/129 (17%)

Query: 42  LSVTVIQAEDLPALDM--GGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFNETFVF 96
           L V +I  + LP ++       DP V V +     D   +    +     NP ++  F F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 97  KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
           +V+                     + F + D+D  SK+D IG+  +    +   +     
Sbjct: 66  EVTV---------------PDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL---KQGYRH 107

Query: 157 RELQSVEGE 165
             L S  G+
Sbjct: 108 VHLLSKNGD 116

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 5e-16
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 21/125 (16%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V V++A DL A D  G SDP+  +        + +T    K LNP +N+ F F +  +
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLE---LGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 64

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161
           +                      +FD D     D +G+V + L  I   Q       L++
Sbjct: 65  HDVLEVT----------------VFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKN 106

Query: 162 VEGEG 166
            + E 
Sbjct: 107 KDLEQ 111

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 63.4 bits (153), Expect = 9e-14
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 32/132 (24%)

Query: 42  LSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
           L + + +A  L                    DPY+ +    D  +  +T   +KT +P +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN--VDDSRIGQTATKQKTNSPAW 65

Query: 91  NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
           ++ FV  V                    + +  A+F        D +    +   ++   
Sbjct: 66  HDEFVTDVC-----------------NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQN 108

Query: 151 --QTIEEWRELQ 160
             +  E+W +L+
Sbjct: 109 GSRHFEDWIDLE 120

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 4e-13
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 20/106 (18%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L +TVI A+            PYV+V +    KK    +    T +P + +     V+  
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKT---EKCNNTNSPKWKQPLTVIVT-- 62

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
                              L F ++          +G   + + + 
Sbjct: 63  ---------------PVSKLHFRVWSHQTLKSDVLLGTAALDIYET 93

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 3e-12
 Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 20/122 (16%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNETFVFKVS 99
           L ++    E          S P+  V +       +       + T+ P +  TF   + 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHD-QIGEVKVALCQIDLAQTIEEWRE 158
                              + +   +         +  +G   +A          E W +
Sbjct: 65  -----------------EGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLD 107

Query: 159 LQ 160
           LQ
Sbjct: 108 LQ 109

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 41  SLSVTVIQAEDLPALDMGGTSDPYVKVYLL-----PDKKKKFETKVHRKTLNPVFNETFV 95
           +LS+TVI  + L           YV+V L      P ++ + +      ++NPV+ E   
Sbjct: 2   TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 96  FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155
                                   +L  A+ +      +  +G   + +  ++       
Sbjct: 58  V-------------FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLC 100

Query: 156 WRELQS 161
                +
Sbjct: 101 LHSESN 106

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (128), Expect = 3e-10
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 27/132 (20%)

Query: 42  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
           L V V +A+   A +     + YV    L  +  K  T    +   P + + F+F+++ L
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVT---LKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56

Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWREL 159
           +     E                +++         +G V + L  I  +  +   EW  L
Sbjct: 57  DLGLTVE----------------VWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL 99

Query: 160 QS-VEGEGGQVY 170
            S       ++ 
Sbjct: 100 DSQAIMADSEIC 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.91
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.9
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.88
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.87
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.87
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.87
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.87
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.86
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.84
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.84
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.79
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.75
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.72
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.69
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.67
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.64
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.39
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.33
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.64

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.3e-23  Score=156.89  Aligned_cols=129  Identities=65%  Similarity=1.035  Sum_probs=113.8

Q ss_pred             ccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeee
Q psy17645         20 LLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS   99 (207)
Q Consensus        20 ~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~   99 (207)
                      .......|++++++.|++..++|+|+|++|+||+..+..+.+||||++.+.+.+.+..+|++++++.+|.|+|.|.|.  
T Consensus        14 ~~~~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~--   91 (143)
T d1rsya_          14 PKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK--   91 (143)
T ss_dssp             ----CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC--
T ss_pred             CCchhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEE--
Confidence            334455689999999999999999999999999999888999999999998877788999999999999999999998  


Q ss_pred             cccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645        100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  161 (207)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~  161 (207)
                                 ++..++....|.|.|||++.++++++||++.++|.++..+....+|++|..
T Consensus        92 -----------i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          92 -----------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             -----------CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             -----------EEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence                       444555667899999999999999999999999999988888899999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.1e-23  Score=152.38  Aligned_cols=127  Identities=49%  Similarity=0.795  Sum_probs=109.5

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      .+|+|+..+++.|++..++|.|.|++|+||+..+..+.+||||++.+.+++.++++|++++++.+|.|+|+|.|.     
T Consensus         1 ~~p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-----   75 (130)
T d1dqva1           1 GAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-----   75 (130)
T ss_dssp             CCSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-----
T ss_pred             CCCcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEE-----
Confidence            368899999999999999999999999999999888999999999997767778999999999999999999998     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc--cccceEEEcccc
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQSV  162 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~--~~~~~w~~L~~~  162 (207)
                              ++..++....|.|+|||++.++++++||++.+++......  .....|++|.+.
T Consensus        76 --------v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          76 --------VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             --------CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             --------EchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence                    5555666678999999999999999999999986432222  344579999863

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-21  Score=142.68  Aligned_cols=121  Identities=32%  Similarity=0.540  Sum_probs=101.0

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |++++++.|++..++|.|+|++|+||+..+..+.+||||++.+.|+..  ..++|++++++.+|.|+|+|.|..      
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~------   74 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP------   74 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECS------
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEee------
Confidence            567899999999999999999999999998899999999999987543  468999999999999999999974      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCC--CCCceeEEEEEeceeeccccccceEEEcc
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ  160 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~--~~~~~lG~~~v~L~~l~~~~~~~~w~~L~  160 (207)
                            ++..++....|.|+|||.+.+  .++++||++.++|.++.... ..+||+|.
T Consensus        75 ------~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          75 ------VHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             ------CCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ------eChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence                  555666778999999999875  34569999999999986543 46899984

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=4.1e-22  Score=147.13  Aligned_cols=131  Identities=30%  Similarity=0.497  Sum_probs=113.0

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      .|+++++++|++..+.|.|.|.+|+||+..+..+.+||||++.+.++..  .+++|++++++.+|.|+|.|.|.      
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~------   74 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD------   74 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE------
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEE------
Confidence            3788999999999999999999999999988889999999999976543  46799999999999999999999      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                             ++..++....|.|.+|+++.+.++++||++.+++.++.  ....+|++|.+.++.....|+
T Consensus        75 -------v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~~v~~Wh  133 (137)
T d2cm5a1          75 -------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKKIERWH  133 (137)
T ss_dssp             -------CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTCCEEEEE
T ss_pred             -------eEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhhCCCCeeeEce
Confidence                   56566677899999999999999999999999998753  445689998887777677775

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-21  Score=143.36  Aligned_cols=127  Identities=23%  Similarity=0.324  Sum_probs=110.9

Q ss_pred             ccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC-ceEEeeeecCCCCCeEecEEEEeeec
Q psy17645         22 TDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK-KKFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        22 ~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      ++...++.++++.|+...+.|.|+|++|+||+.   .+.+||||++.+.+... ..++|+++.++.+|.|+|.|.|.   
T Consensus         8 s~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~---   81 (138)
T d1wfma_           8 SWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP---   81 (138)
T ss_dssp             CCSSCCEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE---
T ss_pred             CCCcCCEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEE---
Confidence            355568889999999999999999999999954   56789999999976543 46789999999999999999999   


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  164 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~  164 (207)
                                ++..++....|.|.|||++.++++++||++.++|.++.......+|++|.+...
T Consensus        82 ----------v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~  135 (138)
T d1wfma_          82 ----------LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP  135 (138)
T ss_dssp             ----------CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred             ----------eeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence                      555667788999999999999999999999999999988888899999987544

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-21  Score=142.58  Aligned_cols=129  Identities=42%  Similarity=0.673  Sum_probs=110.4

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCC-CCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecc
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL  101 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g-~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~  101 (207)
                      ....|+.++++.|++..+.|+|+|++|+||+..+..+ .+||||++.+.+...++++|++++++.+|.|+|+|.|..   
T Consensus         5 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~---   81 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG---   81 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEEC---
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEee---
Confidence            5667999999999999999999999999999887655 479999999988777889999999999999999999964   


Q ss_pred             cccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc-ccceEEEccccC
Q psy17645        102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQSVE  163 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~-~~~~w~~L~~~~  163 (207)
                               ++..++....|.|.|||++.++++++||++.++|.++...+ ....|..+...+
T Consensus        82 ---------~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~p  135 (138)
T d1ugka_          82 ---------IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             ---------CCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             ---------eCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCCC
Confidence                     56566667899999999999999999999999999986443 445677765443

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=7.7e-22  Score=146.22  Aligned_cols=131  Identities=32%  Similarity=0.454  Sum_probs=104.7

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR  103 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~  103 (207)
                      .|+.+++++|++..++|.|.|++|+||+..+..+.+||||++.+.+.+.  .+++|++++.+.+|.|+|+|.|.      
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~------   74 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD------   74 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE------
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEE------
Confidence            3778999999999999999999999999998888999999999876544  35689999999999999999998      


Q ss_pred             cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                             ++..++....|.|.|||++.++++++||++.+++...  +....+|+++...+++....||
T Consensus        75 -------v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~--~~~~~hW~~ll~~~~k~i~~Wh  133 (138)
T d1w15a_          75 -------IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRRQIAKWH  133 (138)
T ss_dssp             -------CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHHSTTCCEEEEE
T ss_pred             -------ecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC--CchHHHHHHHHhCCCCeeeECe
Confidence                   6666777788999999999999999999999999764  2334567777665555555664

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=6.1e-22  Score=147.06  Aligned_cols=124  Identities=35%  Similarity=0.610  Sum_probs=108.0

Q ss_pred             CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc-----------eEEeeeecCCCCCeEecEE
Q psy17645         26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFETKVHRKTLNPVFNETF   94 (207)
Q Consensus        26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~-----------~~~T~~~~~t~~P~w~e~~   94 (207)
                      .|++++++.|+  .+.|.|+|++|+||+..+..|.+||||++.+.+....           +++|++++++.+|.|+|.|
T Consensus         6 ~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T d1rh8a_           6 TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             CCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             ceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEE
Confidence            48899999996  6899999999999999998999999999998654322           3578888999999999999


Q ss_pred             EEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645         95 VFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  163 (207)
Q Consensus        95 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~  163 (207)
                      .|..            ++..++....|.|.|||++.++++++||++.++|.++..+....+||+|.+.+
T Consensus        84 ~f~~------------~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          84 IYKS------------ISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EECS------------CCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEee------------ecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            9984            55556677899999999999999999999999999998888889999998754

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.7e-20  Score=135.93  Aligned_cols=119  Identities=33%  Similarity=0.525  Sum_probs=99.3

Q ss_pred             CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645         27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS  104 (207)
Q Consensus        27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~  104 (207)
                      |...+++.|  ..+.|.|+|++|+||+..+..|.+||||++.+.+..  ..+++|+++.++.+|.|+|.|.|.+      
T Consensus         4 G~i~l~~~~--~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v------   75 (132)
T d1a25a_           4 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL------   75 (132)
T ss_dssp             CEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEEC------
T ss_pred             cEEEEEEEe--cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEe------
Confidence            455555555  689999999999999999989999999999997643  3578999999999999999999984      


Q ss_pred             ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                             +..+ ....|.|.|||++.++++++||++.++|.++..+ ..++|++|.+.
T Consensus        76 -------~~~~-~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~  124 (132)
T d1a25a_          76 -------KESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  124 (132)
T ss_dssp             -------CSGG-GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             -------Eccc-cCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCC
Confidence                   3222 2357999999999999999999999999998644 57899999864

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=9e-21  Score=143.41  Aligned_cols=110  Identities=35%  Similarity=0.642  Sum_probs=98.2

Q ss_pred             CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645         25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLN  102 (207)
Q Consensus        25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~  102 (207)
                      ..|+.++++.|++..++|.|.|.+|+||+..+..+.+||||++.+.+.+..  .++|++++++.+|.|||+|.|.     
T Consensus        10 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~-----   84 (157)
T d1uowa_          10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-----   84 (157)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-----
T ss_pred             eeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE-----
Confidence            358899999999999999999999999999888899999999999765543  5689999999999999999998     


Q ss_pred             ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceee
Q psy17645        103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  147 (207)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l  147 (207)
                              ++..++....|.|.||+++.++++++||++.+++...
T Consensus        85 --------v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          85 --------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             --------CCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             --------ecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence                    5656666789999999999999999999999999764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=5.6e-22  Score=148.07  Aligned_cols=135  Identities=31%  Similarity=0.478  Sum_probs=114.9

Q ss_pred             cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeec
Q psy17645         23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSF  100 (207)
Q Consensus        23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~  100 (207)
                      ....|++++++.|++..+.|.|.|++|+||+..+..+.+||||++.+.+.+..  +++|++++.+.+|.|+|.|.|.   
T Consensus         3 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~---   79 (145)
T d1dqva2           3 KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD---   79 (145)
T ss_dssp             CSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC---
T ss_pred             cCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEE---
Confidence            35679999999999999999999999999998888899999999999765443  6789999999999999999998   


Q ss_pred             ccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645        101 LNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY  171 (207)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~  171 (207)
                                ++..++....|.|.+|+++.++++++||++.+++..+. .....+|++|...+++....||
T Consensus        80 ----------v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~p~~~i~~Wh  139 (145)
T d1dqva2          80 ----------VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEMLANPRKPVEHWH  139 (145)
T ss_dssp             ----------CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC-HHHHHHHHTSSSSSSSCSCSCC
T ss_pred             ----------EehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC-chhhHHHHHHHhCCCCeeeEeE
Confidence                      55566677889999999999999999999999998763 3345789888877776666664

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.5e-20  Score=133.96  Aligned_cols=122  Identities=30%  Similarity=0.458  Sum_probs=101.2

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM  117 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~  117 (207)
                      +-|.|+|+|++|++|+..+..|.+||||++.+   +.++++|+++.++.+|.|+|.|.|.+             +  + .
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~---~~~~~~T~~~~~t~nP~wne~f~f~v-------------~--~-~   64 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLEL---GNDRLQTHTVYKNLNPEWNKVFTFPI-------------K--D-I   64 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE---TTEEEECCCCSSCSSCCCCEEEEEEE-------------S--C-T
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc---CCeEEEEEeeCCceeEEEEEEEEEEE-------------e--c-c
Confidence            45789999999999999998999999999998   45788999999999999999999995             2  2 2


Q ss_pred             CceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645        118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALY  187 (207)
Q Consensus       118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~  187 (207)
                      ...|.|+|||++.++++++||++.++|.++..+.  .+|+.|.....+       ....|+|.+.+++.|
T Consensus        65 ~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~-------~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          65 HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE-------QAFKGVIYLEMDLIY  125 (126)
T ss_dssp             TCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT-------SCCSSEEEEEEEEEE
T ss_pred             CceeEEEEEEccCCcCcceEEEEEEEHHHCCCCC--ceEEEccccCCC-------CceeEEEEEEEEEEE
Confidence            3689999999999898999999999999986543  579888654433       234589998777654

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.9e-19  Score=129.82  Aligned_cols=108  Identities=21%  Similarity=0.388  Sum_probs=91.5

Q ss_pred             CCEEEEEEEEeeCCCCCC---CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645         39 ANSLSVTVIQAEDLPALD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD  115 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~  115 (207)
                      .++|+|+|++|+||+...   ..+.+||||++.+.+...++++|+++.++.+|.|+|.|.|.+               ..
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i---------------~~   66 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL---------------DP   66 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEE---------------CT
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecc---------------cC
Confidence            578999999999998653   247899999999865555788999999999999999999985               23


Q ss_pred             CCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645        116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  162 (207)
Q Consensus       116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~  162 (207)
                      .....|.|+|||.+.. .+++||++.++|.++..+...+.|+.|.+.
T Consensus        67 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~  112 (126)
T d1rlwa_          67 NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV  112 (126)
T ss_dssp             TSCCEEEEEEEECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTT
T ss_pred             cccCcEEEEEEECCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCC
Confidence            3456899999999875 578999999999999888888999999653

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=2.4e-18  Score=126.61  Aligned_cols=124  Identities=24%  Similarity=0.340  Sum_probs=97.9

Q ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645         38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA  116 (207)
Q Consensus        38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~  116 (207)
                      +.+.|+|+|++|++|+..+..+.+||||++.+   +.+..+|+++. .+.+|.|+|.|.|.+             .  + 
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~---~~~~~~t~~~~~~~~nP~Wne~f~f~v-------------~--~-   68 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC---RTQDQKSNVAEGMGTTPEWNETFIFTV-------------S--E-   68 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEES---SSCEEECCCCTTCCSSCEEEEEEEEEE-------------E--S-
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEE---eeeeEEEEEEecCCCcEEEeeEEEEEE-------------c--C-
Confidence            45789999999999999988899999999998   34677788876 688999999999985             2  1 


Q ss_pred             CCceEEEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEccccCCCCceEEeecCCCCceeeeceeeeeccee
Q psy17645        117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVG  192 (207)
Q Consensus       117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~~  192 (207)
                      ....|.|+|||++.+++|++||++.++|.++... .....|+.|.....          ..|+|.+  .+.|.|...
T Consensus        69 ~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~----------~~G~i~l--~l~~~p~~p  133 (136)
T d1wfja_          69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE----------YKGEIWV--ALSFKPSGP  133 (136)
T ss_dssp             SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTE----------EEEEEEE--EEEEEECCS
T ss_pred             ccceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCc----------cCEEEEE--EEEEEeCCC
Confidence            3356999999999999999999999999987443 34467998864221          2378888  555777544

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.72  E-value=3.7e-17  Score=120.47  Aligned_cols=104  Identities=19%  Similarity=0.339  Sum_probs=86.8

Q ss_pred             CCEEEEEEEEeeCCCCCC-----------CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccccccee
Q psy17645         39 ANSLSVTVIQAEDLPALD-----------MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVF  107 (207)
Q Consensus        39 ~~~L~V~I~~a~nL~~~~-----------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~  107 (207)
                      .+.|+|+|++|++|++.+           ..+..||||.+.+  ++....+|+++.++.+|.|+|.|.|.+         
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l--~~~~~~~T~~~~~t~~P~Wne~f~f~v---------   73 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTDV---------   73 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEEE---------
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe--CCCcCcEeeEEcCCCCccCccEEEEEE---------
Confidence            578999999999998642           4577899999999  344567899999999999999999984         


Q ss_pred             ccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc--ccceEEEccc
Q psy17645        108 EQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQS  161 (207)
Q Consensus       108 ~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~--~~~~w~~L~~  161 (207)
                          +    ....|.|+|||.+.+++|++||.+.++|.++....  ....|++|.+
T Consensus        74 ----~----~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p  121 (136)
T d1gmia_          74 ----C----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             ----E----EECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             ----e----cCCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC
Confidence                3    23689999999999999999999999999986553  3568999963

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=7e-16  Score=112.66  Aligned_cols=108  Identities=25%  Similarity=0.354  Sum_probs=83.4

Q ss_pred             CEEEEEEEEeeCCCCC--CCCCCCCcEEEEEEEC--CCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645         40 NSLSVTVIQAEDLPAL--DMGGTSDPYVKVYLLP--DKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~--~~~g~~dpyv~v~l~~--~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      ..|+|+|++|++|+..  +..+.+||||++.+.+  ...++++|++++ ++.+|.|+|+|.|.+            .. .
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~------------~~-~   70 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV------------TV-P   70 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEE------------SC-G
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEE------------Ec-c
Confidence            3699999999999754  3467799999999864  234678898876 457999999999985            22 2


Q ss_pred             cCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                        ....|.|+|||++..+++++||++.++|..+..+   .+|++|.+..++
T Consensus        71 --~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~  116 (131)
T d1qasa2          71 --DLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGD  116 (131)
T ss_dssp             --GGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSC
T ss_pred             --hhceEEEEEEEecCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcC
Confidence              2357999999999999999999999999988544   468888765554

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.9e-16  Score=113.10  Aligned_cols=89  Identities=18%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      ++|.|+|++|+++...+..+.+||||.+.+   +.+.++|+++.++.+|.|||.|.|.+             .    ...
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~~-------------~----~~~   65 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTV---DGQSKKTEKCNNTNSPKWKQPLTVIV-------------T----PVS   65 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEE---TTEEEECCCCSSCSSCEEEEEEEEEE-------------C----TTC
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEE---CCeEEeeEEEEecccEEEcceEEEEE-------------E----ecc
Confidence            679999999999998888888999999998   45788999999999999999999985             2    235


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQID  148 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~  148 (207)
                      .|.|+|||++.+++|++||++.++|.++.
T Consensus        66 ~l~~~V~d~d~~~~d~~iG~~~i~L~~l~   94 (133)
T d2nq3a1          66 KLHFRVWSHQTLKSDVLLGTAALDIYETL   94 (133)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEHHHHH
T ss_pred             eeEEEEEEccCCCCCceEEEEEEEHHHhh
Confidence            89999999999999999999999998874

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.3e-15  Score=109.69  Aligned_cols=119  Identities=19%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT  120 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~  120 (207)
                      .|.|+|.+|++|...+   ..||||.+.+   +..+.+|.+++. .+|.|+|.|.|.+             .  + ....
T Consensus         3 ~L~V~v~~a~~l~~~~---~~dpYv~l~~---~~~k~~T~~~k~-~nP~Wne~f~f~v-------------~--~-~~~~   59 (128)
T d2cjta1           3 LLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVKSTTIAVRG-SQPSWEQDFMFEI-------------N--R-LDLG   59 (128)
T ss_dssp             EEEEEEEEEECSSCGG---GCEEEEEEEE---TTEEEECCCEES-SSCEEEEEEEEEE-------------C--C-CSSE
T ss_pred             EEEEEEEEEECCCCCC---CcCeEEEEEe---CCEEEEEEEecC-CCCeEEEEEEEee-------------c--c-ccce
Confidence            5899999999999865   5799999998   456788888765 5999999999995             2  2 2368


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeceeeccc--cccceEEEccccCCCCceEEe--ecCCCCceeeec
Q psy17645        121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQSVEGEGGQVYY--LDGPKGNLATGK  183 (207)
Q Consensus       121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~--~~~~~w~~L~~~~~~~~~~~~--l~~~~g~i~~~~  183 (207)
                      |.|+|||.+.. .|++||++.++|.++..+  ....+|+.|........++..  .....+.+.+.+
T Consensus        60 L~v~V~d~~~~-~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~  125 (128)
T d2cjta1          60 LTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDA  125 (128)
T ss_dssp             EEEEEEECCSS-CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEE
T ss_pred             EEEEEEeCCCc-CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEE
Confidence            99999999876 589999999999998543  345689999875544444433  244555665533

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=2.3e-12  Score=92.83  Aligned_cols=106  Identities=16%  Similarity=0.252  Sum_probs=78.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645         42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK  119 (207)
Q Consensus        42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~  119 (207)
                      +.|.+..+..+  ....+.+||||.+.+.+..  .+.++|+++++|.+|.|||+|.|.+             .    ...
T Consensus         7 ~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v-------------~----~~~   67 (123)
T d1bdya_           7 ISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-------------Y----EGR   67 (123)
T ss_dssp             EEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEEC-------------C----TTC
T ss_pred             EEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEE-------------c----ccc
Confidence            34444444444  3447889999999995422  2356788999999999999999984             2    236


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeceeecc-----ccccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645        120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK  184 (207)
Q Consensus       120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~-----~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~  184 (207)
                      .+.|.|||.+    ++++|.+.+++..+..     +...+.|++|.+              .|+|.+.++
T Consensus        68 ~l~i~V~d~d----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~--------------~Gkl~l~v~  119 (123)
T d1bdya_          68 VIQIVLMRAA----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP--------------QAKVLMCVQ  119 (123)
T ss_dssp             EEEEEEEEET----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--------------SCEEEEEEE
T ss_pred             EEEEEEEEcc----ccccCccEEehhheeeccccCCCcccEEEeCCC--------------CEEEEEEEE
Confidence            8999999976    5899999999988743     345668999952              377887555

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1e-11  Score=89.22  Aligned_cols=100  Identities=26%  Similarity=0.407  Sum_probs=72.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC---CCCceEEeee--ecCCCCCeEecE-EEEeeecccccceeccCcccC
Q psy17645         41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKV--HRKTLNPVFNET-FVFKVSFLNRSEVFEQGVPYA  114 (207)
Q Consensus        41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~---~~~~~~~T~~--~~~t~~P~w~e~-~~f~~~~~~~~~~~~~~~~~~  114 (207)
                      .|.|+|+.|++|+..    ..||||++.+..   +..++.+|++  ..++.+|.|||. +.|..            ....
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~------------~~~~   65 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK------------ILMP   65 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEE------------ESSG
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEe------------cCCC
Confidence            589999999999765    489999999853   2234444544  467899999975 44432            2222


Q ss_pred             cCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645        115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  165 (207)
Q Consensus       115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~  165 (207)
                        ....|.|.|||++    ++++|++.+||+.+..|   -+|.+|.+..++
T Consensus        66 --~l~~L~f~V~D~d----~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~  107 (122)
T d2zkmx2          66 --ELASLRVAVMEEG----NKFLGHRIIPINALNSG---YHHLCLHSESNM  107 (122)
T ss_dssp             --GGCEEEEEEEETT----TEEEEEEEEEGGGBCCE---EEEEEEECTTCC
T ss_pred             --cccEEEEEEECCC----CCEEEEEEEEcccCcCC---ceEEEccCCCcC
Confidence              3358999999975    68999999999988655   466777765544