Psyllid ID: psy17674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MERQIMEQKMKLKRQTSSMIQATDISGRGLRPLSSSSSREFYCYNGPLQFTRTQASTDTSDYGSGYPDRSSQDDEDDDDDDEDDIEQELSDISLHRGSHVISDPDEINSGSLPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccEEEEEEEEccccccccccccEEEEEEcccccccccEEccccccEEEEEEccccccccEEcccccccHHHHHHHHcccccccEEEEEcccccccccccEEEEcccccEEEEcccEEEEEEccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccEEEEEEEcccccccccccEEEEEEEcccccEccccccccccccEEEEEEcEcccccEcccccccccccHHHHHHccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MERQIMEQKMKLKRQTSSmiqatdisgrglrplsssssrefycyngplqftrtqastdtsdygsgypdrssqddeddddddedDIEQELSDIslhrgshvisdpdeinsgslpiemqgevvgnlerfvlepaaqkvsykcritrdrkgvdrglyptYFLHLERdygkkdtnvlgfkgprkmtvlipgmtqsyervsitpLEISETLIECWNSKNMDNIIELHnktptwnedtqSYVLNFHGRVTQASVKNfqiihdndpeyiVLQFgrtsedvftmdyryplcplqAFSIALSSfdsklace
Flexible Loop (DISEMBL)
MERQIMEQKMklkrqtssmiqatdisgrglrplssssSREFYCYNGPlqftrtqastdtsdygsgypdrssqddeddDDDDEDDIEQELsdislhrgshVISDPDEINSGSLPIEMQGEVVGNLERFVLepaaqkvsykcritrdrkgvdrgLYPTYFlhlerdygkkdtnvlgfkgprKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE
Low Complexity Region (SEG)
MERQIMEQKMKLKRQTSSMIQATDIsgrglrplsssssrEFYCYNGPLQFTRTQASTDTSDYGSGYPdrssqddeddddddeddieqelsdisLHRGSHVISDPDEINSGSLPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE
Disordered region (IsUnstruct)
****************************************FYCYNGPLQF******************************************************************QGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSF*******
Disordered Region (DISOPRED)
*ERQIM************************************************************************************************************************FVL**********************GLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLI*********************************IELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE
Disordered Region (DISEMBL)
*******************IQATDISGRGLRPLSSSSSREFYCYNGPLQFTRTQ*******************************EQELSDISLHRGSHVISDPDEINSGSLPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE
Disordered Region (DISPRO)
*********************************************************************************************************************GEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLAC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERQIMEQKMKLKRQTSSMIQATDISGRGLRPLSSSSSREFYCYNGPLQFTRTQASTDTSDYGSGYPDRSSQDDEDDDDDDEDDIEQELSDISLHRGSHVISDPDEINSGSLPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q7PZK5	447	Protein king tubby OS=Ano	yes	N/A	0.430	0.290	0.731	4e-60
P50607	506	Tubby protein homolog OS=	yes	N/A	0.443	0.264	0.761	7e-60
O88808	505	Tubby protein homolog OS=	yes	N/A	0.443	0.265	0.753	5e-59
P50586	505	Tubby protein OS=Mus musc	yes	N/A	0.443	0.265	0.753	5e-59
Q16KI5	410	Protein king tubby 1 OS=A	N/A	N/A	0.284	0.209	0.723	7e-59
Q16IR1	410	Protein king tubby 2 OS=A	N/A	N/A	0.284	0.209	0.723	1e-58
Q86PC9	460	Protein king tubby OS=Dro	yes	N/A	0.443	0.291	0.725	3e-58
B4I7J9	443	Protein king tubby OS=Dro	N/A	N/A	0.443	0.302	0.725	3e-58
B4QFM2	443	Protein king tubby OS=Dro	N/A	N/A	0.443	0.302	0.725	3e-58
B3NJY0	448	Protein king tubby OS=Dro	N/A	N/A	0.443	0.299	0.725	3e-58

>sp|Q7PZK5|TULP_ANOGA Protein king tubby OS=Anopheles gambiae GN=king-tubby PE=3 SV=4

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTN+LGFKGPR MTVL+PGMT+  +RV I+ ++  + L++CW SKNMDN++ELHNKTP W
Sbjct: 314 DTNILGFKGPRNMTVLLPGMTEDDQRVQISSVDDQQGLLDCWKSKNMDNVVELHNKTPIW 373

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRT++D+FTMD+RYPLC  QAF
Sbjct: 374 NDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTADDIFTMDFRYPLCAFQAF 433

Query: 289 SIALSSFDSKLACE 302
           +IALSSFD KLACE
Sbjct: 434 AIALSSFDGKLACE 447

Anopheles gambiae (taxid: 7165)

>sp|P50607|TUB_HUMAN Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1

 Score =  231 bits (588), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 116/134 (86%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERVSI P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 373 ETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVW 432

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 433 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 492

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 493 AIALSSFDSKLACE 506

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight (By similarity). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Homo sapiens (taxid: 9606)

>sp|O88808|TUB_RAT Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1

 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 115/134 (85%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERV I P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 372 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 431

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 432 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 491

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 492 AIALSSFDSKLACE 505

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight (By similarity). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Rattus norvegicus (taxid: 10116)

>sp|P50586|TUB_MOUSE Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1

 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 115/134 (85%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERV I P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 372 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 431

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 432 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 491

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 492 AIALSSFDSKLACE 505

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight. Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Mus musculus (taxid: 10090)

>sp|Q16KI5|TULP1_AEDAE Protein king tubby 1 OS=Aedes aegypti GN=king-tubby1 PE=3 SV=2

 Score =  227 bits (579), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 119/134 (88%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTN+LGFKGPR MTVL+PGMT+  +RV I+  +  + L++ W SKNMDN++ELHNKTP W
Sbjct: 277 DTNILGFKGPRNMTVLLPGMTEDDQRVKISSADSQQGLLDSWKSKNMDNVVELHNKTPIW 336

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N++TQSYVLNFHGRVTQASVKNFQ++HD+DP+YIV+QFGRTS+D+FTMD+RYPLC  QAF
Sbjct: 337 NDETQSYVLNFHGRVTQASVKNFQLVHDSDPDYIVMQFGRTSDDIFTMDFRYPLCAFQAF 396

Query: 289 SIALSSFDSKLACE 302
           +IALSSFD KLACE
Sbjct: 397 AIALSSFDGKLACE 410

Aedes aegypti (taxid: 7159)

>sp|Q16IR1|TULP2_AEDAE Protein king tubby 2 OS=Aedes aegypti GN=king-tubby2 PE=3 SV=1

 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 119/134 (88%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTN+LGFKGPR MTVL+PGMT+  +RV I+  +  + L++ W SKNMDN++ELHNKTP W
Sbjct: 277 DTNILGFKGPRNMTVLLPGMTEDDQRVKISSADGQQGLLDSWKSKNMDNVVELHNKTPIW 336

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N++TQSYVLNFHGRVTQASVKNFQ++HD+DP+YIV+QFGRTS+D+FTMD+RYPLC  QAF
Sbjct: 337 NDETQSYVLNFHGRVTQASVKNFQLVHDSDPDYIVMQFGRTSDDIFTMDFRYPLCAFQAF 396

Query: 289 SIALSSFDSKLACE 302
           +IALSSFD KLACE
Sbjct: 397 AIALSSFDGKLACE 410

Aedes aegypti (taxid: 7159)

>sp|Q86PC9|TULP_DROME Protein king tubby OS=Drosophila melanogaster GN=king-tubby PE=1 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 119/135 (88%), Gaps = 1/135 (0%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISET-LIECWNSKNMDNIIELHNKTPT 227
           DTN+LGFKGPR MTV++PGMT+  +RV I+  +  +  +++ W  KNMDNI+ELHNKTP 
Sbjct: 326 DTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDLWKMKNMDNIVELHNKTPV 385

Query: 228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
           WN++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRTSEDVFTMDYRYPLC +QA
Sbjct: 386 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQA 445

Query: 288 FSIALSSFDSKLACE 302
           F+IALSSFD K+ACE
Sbjct: 446 FAIALSSFDGKIACE 460

Drosophila melanogaster (taxid: 7227)

>sp|B4I7J9|TULP_DROSE Protein king tubby OS=Drosophila sechellia GN=king-tubby PE=3 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 119/135 (88%), Gaps = 1/135 (0%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISET-LIECWNSKNMDNIIELHNKTPT 227
           DTN+LGFKGPR MTV++PGMT+  +RV I+  +  +  +++ W  KNMDNI+ELHNKTP 
Sbjct: 309 DTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDLWKMKNMDNIVELHNKTPV 368

Query: 228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
           WN++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRTSEDVFTMDYRYPLC +QA
Sbjct: 369 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQA 428

Query: 288 FSIALSSFDSKLACE 302
           F+IALSSFD K+ACE
Sbjct: 429 FAIALSSFDGKIACE 443

Drosophila sechellia (taxid: 7238)

>sp|B4QFM2|TULP_DROSI Protein king tubby OS=Drosophila simulans GN=king-tubby PE=3 SV=1

 Score =  225 bits (573), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 119/135 (88%), Gaps = 1/135 (0%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISET-LIECWNSKNMDNIIELHNKTPT 227
           DTN+LGFKGPR MTV++PGMT+  +RV I+  +  +  +++ W  KNMDNI+ELHNKTP 
Sbjct: 309 DTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDLWKMKNMDNIVELHNKTPV 368

Query: 228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
           WN++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRTSEDVFTMDYRYPLC +QA
Sbjct: 369 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQA 428

Query: 288 FSIALSSFDSKLACE 302
           F+IALSSFD K+ACE
Sbjct: 429 FAIALSSFDGKIACE 443

Drosophila simulans (taxid: 7240)

>sp|B3NJY0|TULP_DROER Protein king tubby OS=Drosophila erecta GN=king-tubby PE=3 SV=1

 Score =  225 bits (573), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 119/135 (88%), Gaps = 1/135 (0%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISET-LIECWNSKNMDNIIELHNKTPT 227
           DTN+LGFKGPR MTV++PGMT+  +RV I+  +  +  +++ W  KNMDNI+ELHNKTP 
Sbjct: 314 DTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDLWKMKNMDNIVELHNKTPV 373

Query: 228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
           WN++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRTSEDVFTMDYRYPLC +QA
Sbjct: 374 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQA 433

Query: 288 FSIALSSFDSKLACE 302
           F+IALSSFD K+ACE
Sbjct: 434 FAIALSSFDGKIACE 448

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
392347662	437	PREDICTED: tubby-related protein 3-like	0.602	0.416	0.525	1e-67
270005704	400	hypothetical protein TcasGA2_TC007804 [T	0.321	0.242	0.798	4e-62
189236115	397	PREDICTED: similar to king tubby CG9398-	0.321	0.244	0.798	4e-62
345490346	395	PREDICTED: protein king tubby 1-like iso	0.370	0.283	0.791	1e-60
345490348	374	PREDICTED: protein king tubby 1-like iso	0.370	0.299	0.791	2e-60
326920036	506	PREDICTED: tubby protein homolog [Meleag	0.417	0.249	0.776	3e-60
350397500	415	PREDICTED: protein king tubby-like [Bomb	0.354	0.257	0.783	6e-60
66535389	415	PREDICTED: protein king tubby-like [Apis	0.354	0.257	0.783	6e-60
380019882	426	PREDICTED: LOW QUALITY PROTEIN: protein	0.354	0.251	0.783	6e-60
383855528	415	PREDICTED: protein king tubby-like [Mega	0.347	0.253	0.783	7e-60

>gi|392347662|ref|XP_001071995.2| PREDICTED: tubby-related protein 3-like [Rattus norvegicus]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/232 (52%), Positives = 153/232 (65%), Gaps = 50/232 (21%)

Query: 121 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK------------ 168
           V NLE F   PA + V+ KCR+TRD+KG+DRGL+PTY++HLE++  +K            
Sbjct: 206 VENLEDFAYSPAPRGVTVKCRVTRDKKGMDRGLFPTYYMHLEKEENRKIIMSVAFSPHTR 265

Query: 169 --------------------------------------DTNVLGFKGPRKMTVLIPGMTQ 190
                                                 +TNVLGFKGPRKM+V+IPGM  
Sbjct: 266 SNLMGTKFTVYDHGVNPVKAQGLVEKAHTRQELAAICYETNVLGFKGPRKMSVIIPGMNM 325

Query: 191 SYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKN 250
           ++ER+   P    E+L+  W +K+M+N+IELHNK P WN+DTQSYVLNFHGRVTQASVKN
Sbjct: 326 NHERIPFRPRNEHESLLSKWQNKSMENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKN 385

Query: 251 FQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDSKLACE 302
           FQI+H NDP+YIV+QFGR ++DVFT+DY YPLC LQAF+I LSSFDSKLACE
Sbjct: 386 FQIVHGNDPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 437

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270005704|gb|EFA02152.1| hypothetical protein TcasGA2_TC007804 [Tribolium castaneum]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 122/134 (91%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV++PGMT   +RV+I P + SE+LIECW SKNMDN+IELHNKTP W
Sbjct: 267 DTNVLGFKGPRKMTVILPGMTLDQQRVAIYPQDESESLIECWKSKNMDNLIELHNKTPVW 326

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQI+HD+D EY+V+QFGR +ED FTMDYRYP+C LQAF
Sbjct: 327 NDDTQSYVLNFHGRVTQASVKNFQIVHDSDVEYVVMQFGRVAEDAFTMDYRYPMCALQAF 386

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 387 AIALSSFDSKLACE 400

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236115|ref|XP_974118.2| PREDICTED: similar to king tubby CG9398-PB [Tribolium castaneum]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 122/134 (91%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV++PGMT   +RV+I P + SE+LIECW SKNMDN+IELHNKTP W
Sbjct: 264 DTNVLGFKGPRKMTVILPGMTLDQQRVAIYPQDESESLIECWKSKNMDNLIELHNKTPVW 323

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQI+HD+D EY+V+QFGR +ED FTMDYRYP+C LQAF
Sbjct: 324 NDDTQSYVLNFHGRVTQASVKNFQIVHDSDVEYVVMQFGRVAEDAFTMDYRYPMCALQAF 383

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 384 AIALSSFDSKLACE 397

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490346|ref|XP_001606230.2| PREDICTED: protein king tubby 1-like isoform 1 [Nasonia vitripennis]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV+IPGMT   +RV I P + SETL+EC+ SKNMDN+IELHNKTP W
Sbjct: 262 DTNVLGFKGPRKMTVIIPGMTPDQKRVEICPRDESETLLECYKSKNMDNLIELHNKTPVW 321

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQ++HD D +Y+V+QFGR +EDVFTMDYR+PLC LQAF
Sbjct: 322 NDDTQSYVLNFHGRVTQASVKNFQVVHDTDVDYVVMQFGRVAEDVFTMDYRFPLCALQAF 381

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 382 AIALSSFDSKLACE 395

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490348|ref|XP_003426356.1| PREDICTED: protein king tubby 1-like isoform 2 [Nasonia vitripennis]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV+IPGMT   +RV I P + SETL+EC+ SKNMDN+IELHNKTP W
Sbjct: 241 DTNVLGFKGPRKMTVIIPGMTPDQKRVEICPRDESETLLECYKSKNMDNLIELHNKTPVW 300

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQ++HD D +Y+V+QFGR +EDVFTMDYR+PLC LQAF
Sbjct: 301 NDDTQSYVLNFHGRVTQASVKNFQVVHDTDVDYVVMQFGRVAEDVFTMDYRFPLCALQAF 360

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 361 AIALSSFDSKLACE 374

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326920036|ref|XP_003206282.1| PREDICTED: tubby protein homolog [Meleagris gallopavo]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 118/134 (88%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V+IPGM   +ERVSI P    ETL+  W +KN +++IELHNKTP W
Sbjct: 373 ETNVLGFKGPRKMSVIIPGMNMDHERVSIRPRNEHETLLARWQNKNTESVIELHNKTPVW 432

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIV+QFGR +EDVFTMDY YP+C LQAF
Sbjct: 433 NDDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVMQFGRVAEDVFTMDYNYPMCALQAF 492

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 493 AIALSSFDSKLACE 506

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350397500|ref|XP_003484896.1| PREDICTED: protein king tubby-like [Bombus impatiens]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV+IPGMT   +RV I P + SETL+E W +KNMDN+IELHNKTP W
Sbjct: 282 DTNVLGFKGPRKMTVIIPGMTSDQKRVEICPRDESETLLERWKTKNMDNLIELHNKTPVW 341

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQ++HD+D +Y+V+QFGR +EDVFTMDYR+PLC LQAF
Sbjct: 342 NDDTQSYVLNFHGRVTQASVKNFQVVHDSDVDYVVMQFGRVAEDVFTMDYRFPLCTLQAF 401

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 402 AIALSSFDSKLACE 415

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66535389|ref|XP_395938.2| PREDICTED: protein king tubby-like [Apis mellifera]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV+IPGMT   +RV I P + SETL+E W +KNMDN+IELHNKTP W
Sbjct: 282 DTNVLGFKGPRKMTVIIPGMTSDQKRVEICPRDESETLLERWKTKNMDNLIELHNKTPVW 341

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQ++HD+D +Y+V+QFGR +EDVFTMDYR+PLC LQAF
Sbjct: 342 NDDTQSYVLNFHGRVTQASVKNFQVVHDSDVDYVVMQFGRVAEDVFTMDYRFPLCTLQAF 401

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 402 AIALSSFDSKLACE 415

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019882|ref|XP_003693830.1| PREDICTED: LOW QUALITY PROTEIN: protein king tubby-like [Apis florea]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV+IPGMT   +RV I P + SETL+E W +KNMDN+IELHNKTP W
Sbjct: 293 DTNVLGFKGPRKMTVIIPGMTSDQKRVEICPRDESETLLERWKTKNMDNLIELHNKTPVW 352

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQ++HD+D +Y+V+QFGR +EDVFTMDYR+PLC LQAF
Sbjct: 353 NDDTQSYVLNFHGRVTQASVKNFQVVHDSDVDYVVMQFGRVAEDVFTMDYRFPLCTLQAF 412

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 413 AIALSSFDSKLACE 426

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855528|ref|XP_003703262.1| PREDICTED: protein king tubby-like [Megachile rotundata]

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 121/134 (90%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           DTNVLGFKGPRKMTV+IPGMT   +RV I P + SETL+E W +KNMDN+IELHNKTP W
Sbjct: 282 DTNVLGFKGPRKMTVIIPGMTSDQKRVEICPRDESETLLERWKTKNMDNLIELHNKTPVW 341

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQ++HD+D +Y+V+QFGR +EDVFTMDYR+PLC LQAF
Sbjct: 342 NDDTQSYVLNFHGRVTQASVKNFQVVHDSDVDYVVMQFGRVAEDVFTMDYRFPLCTLQAF 401

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 402 AIALSSFDSKLACE 415

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
UNIPROTKB|Q7PZK5	447	king-tubby "Protein king tubby	0.443	0.299	0.731	5.8e-84
UNIPROTKB|Q16KI5	410	king-tubby1 "Protein king tubb	0.443	0.326	0.723	9.4e-82
UNIPROTKB|Q16IR1	410	king-tubby2 "Protein king tubb	0.443	0.326	0.723	1.5e-81
UNIPROTKB|B0XFQ9	427	king-tubby1 "Protein king tubb	0.443	0.313	0.711	6.5e-81
UNIPROTKB|B0WI30	422	king-tubby2 "Protein king tubb	0.443	0.317	0.711	2.2e-80
UNIPROTKB|F1N7S0	478	TULP3 "Uncharacterized protein	0.443	0.280	0.716	7.6e-71
MGI|MGI:1329045	460	Tulp3 "tubby-like protein 3" [	0.443	0.291	0.708	2e-70
RGD|1585259	451	Tulp3 "tubby-like protein 3" [	0.443	0.297	0.708	2e-70
MGI|MGI:109571	543	Tulp1 "tubby like protein 1" [	0.443	0.246	0.686	4.2e-63
UNIPROTKB|B3MDU3	449	king-tubby "Protein king tubby	0.443	0.298	0.725	3.7e-62

UNIPROTKB|Q7PZK5 king-tubby "Protein king tubby" [Anopheles gambiae (taxid:7165)]

 Score = 575 (207.5 bits), Expect = 5.8e-84, Sum P(3) = 5.8e-84
 Identities = 98/134 (73%), Positives = 121/134 (90%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             DTN+LGFKGPR MTVL+PGMT+  +RV I+ ++  + L++CW SKNMDN++ELHNKTP W
Sbjct:   314 DTNILGFKGPRNMTVLLPGMTEDDQRVQISSVDDQQGLLDCWKSKNMDNVVELHNKTPIW 373

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             N++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRT++D+FTMD+RYPLC  QAF
Sbjct:   374 NDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTADDIFTMDFRYPLCAFQAF 433

Query:   289 SIALSSFDSKLACE 302
             +IALSSFD KLACE
Sbjct:   434 AIALSSFDGKLACE 447

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q16KI5 king-tubby1 "Protein king tubby 1" [Aedes aegypti (taxid:7159)]

 Score = 564 (203.6 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
 Identities = 97/134 (72%), Positives = 119/134 (88%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             DTN+LGFKGPR MTVL+PGMT+  +RV I+  +  + L++ W SKNMDN++ELHNKTP W
Sbjct:   277 DTNILGFKGPRNMTVLLPGMTEDDQRVKISSADSQQGLLDSWKSKNMDNVVELHNKTPIW 336

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             N++TQSYVLNFHGRVTQASVKNFQ++HD+DP+YIV+QFGRTS+D+FTMD+RYPLC  QAF
Sbjct:   337 NDETQSYVLNFHGRVTQASVKNFQLVHDSDPDYIVMQFGRTSDDIFTMDFRYPLCAFQAF 396

Query:   289 SIALSSFDSKLACE 302
             +IALSSFD KLACE
Sbjct:   397 AIALSSFDGKLACE 410

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q16IR1 king-tubby2 "Protein king tubby 2" [Aedes aegypti (taxid:7159)]

 Score = 562 (202.9 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
 Identities = 97/134 (72%), Positives = 119/134 (88%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             DTN+LGFKGPR MTVL+PGMT+  +RV I+  +  + L++ W SKNMDN++ELHNKTP W
Sbjct:   277 DTNILGFKGPRNMTVLLPGMTEDDQRVKISSADGQQGLLDSWKSKNMDNVVELHNKTPIW 336

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             N++TQSYVLNFHGRVTQASVKNFQ++HD+DP+YIV+QFGRTS+D+FTMD+RYPLC  QAF
Sbjct:   337 NDETQSYVLNFHGRVTQASVKNFQLVHDSDPDYIVMQFGRTSDDIFTMDFRYPLCAFQAF 396

Query:   289 SIALSSFDSKLACE 302
             +IALSSFD KLACE
Sbjct:   397 AIALSSFDGKLACE 410

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|B0XFQ9 king-tubby1 "Protein king tubby 1" [Culex quinquefasciatus (taxid:7176)]

 Score = 548 (198.0 bits), Expect = 6.5e-81, Sum P(3) = 6.5e-81
 Identities = 96/135 (71%), Positives = 118/135 (87%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEI-SETLIECWNSKNMDNIIELHNKTPT 227
             DTN+LGFKGPR MTVL+PGMT+  +RV I   +   + L++ W SK+MDN++ELHNKTP 
Sbjct:   293 DTNILGFKGPRNMTVLLPGMTEDDQRVKINSSDSHGQGLLDSWKSKHMDNVVELHNKTPI 352

Query:   228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
             WN++TQSYVLNFHGRVTQASVKNFQ++HD+DP+YIV+QFGRTS+D+FTMD+RYPLC  QA
Sbjct:   353 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPDYIVMQFGRTSDDIFTMDFRYPLCAFQA 412

Query:   288 FSIALSSFDSKLACE 302
             F+IALSSFD KLACE
Sbjct:   413 FAIALSSFDGKLACE 427

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|B0WI30 king-tubby2 "Protein king tubby 2" [Culex quinquefasciatus (taxid:7176)]

 Score = 548 (198.0 bits), Expect = 2.2e-80, Sum P(3) = 2.2e-80
 Identities = 96/135 (71%), Positives = 118/135 (87%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEI-SETLIECWNSKNMDNIIELHNKTPT 227
             DTN+LGFKGPR MTVL+PGMT+  +RV I   +   + L++ W SK+MDN++ELHNKTP 
Sbjct:   288 DTNILGFKGPRNMTVLLPGMTEDDQRVKINSSDSHGQGLLDSWKSKHMDNVVELHNKTPI 347

Query:   228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
             WN++TQSYVLNFHGRVTQASVKNFQ++HD+DP+YIV+QFGRTS+D+FTMD+RYPLC  QA
Sbjct:   348 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPDYIVMQFGRTSDDIFTMDFRYPLCAFQA 407

Query:   288 FSIALSSFDSKLACE 302
             F+IALSSFD KLACE
Sbjct:   408 FAIALSSFDGKLACE 422

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|F1N7S0 TULP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 547 (197.6 bits), Expect = 7.6e-71, Sum P(3) = 7.6e-71
 Identities = 96/134 (71%), Positives = 116/134 (86%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             +TNVLGFKGPRKM+V+IPGM  ++ER+   P    E+L+  W +K M+N+IELHNK+P W
Sbjct:   345 ETNVLGFKGPRKMSVIIPGMNMNHERIPFQPRNDHESLLSKWQNKAMENLIELHNKSPVW 404

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             N+DTQSYVLNFHGRVTQASVKNFQI+HDNDP+YIV+QFGR ++DVFT+DY YPLC LQAF
Sbjct:   405 NDDTQSYVLNFHGRVTQASVKNFQIVHDNDPDYIVMQFGRVADDVFTLDYNYPLCALQAF 464

Query:   289 SIALSSFDSKLACE 302
             +I LSSFDSKLACE
Sbjct:   465 AIGLSSFDSKLACE 478

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0060434 "bronchus morphogenesis" evidence=IEA

GO:0048702 "embryonic neurocranium morphogenesis" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0021953 "central nervous system neuron differentiation" evidence=IEA

GO:0021914 "negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

MGI|MGI:1329045 Tulp3 "tubby-like protein 3" [Mus musculus (taxid:10090)]

 Score = 542 (195.9 bits), Expect = 2.0e-70, Sum P(3) = 2.0e-70
 Identities = 95/134 (70%), Positives = 115/134 (85%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             +TNVLGFKGPRKM+V+IPGM  ++ER+   P    E+L+  W +K+M+N+IELHNK P W
Sbjct:   327 ETNVLGFKGPRKMSVIIPGMNMNHERIPFRPRNEHESLLSKWQNKSMENLIELHNKAPVW 386

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             N+DTQSYVLNFHGRVTQASVKNFQI+H NDP+YIV+QFGR ++DVFT+DY YPLC LQAF
Sbjct:   387 NDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDYIVMQFGRVADDVFTLDYNYPLCALQAF 446

Query:   289 SIALSSFDSKLACE 302
             +I LSSFDSKLACE
Sbjct:   447 AIGLSSFDSKLACE 460

GO:0001701 "in utero embryonic development" evidence=IGI;IMP

GO:0001843 "neural tube closure" evidence=IMP

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=ISO

GO:0008589 "regulation of smoothened signaling pathway" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IMP

GO:0021914 "negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0021953 "central nervous system neuron differentiation" evidence=IMP

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0035085 "cilium axoneme" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=ISO

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISO;IMP

GO:0048702 "embryonic neurocranium morphogenesis" evidence=IMP

GO:0060173 "limb development" evidence=IGI;IMP

GO:0060434 "bronchus morphogenesis" evidence=IMP

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IMP

GO:0072372 "primary cilium" evidence=ISO

RGD|1585259 Tulp3 "tubby-like protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 542 (195.9 bits), Expect = 2.0e-70, Sum P(3) = 2.0e-70
 Identities = 95/134 (70%), Positives = 115/134 (85%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             +TNVLGFKGPRKM+V+IPGM  ++ER+   P    E+L+  W +K+M+N+IELHNK P W
Sbjct:   318 ETNVLGFKGPRKMSVIIPGMNMNHERIPFRPRNEHESLLSKWQNKSMENLIELHNKAPVW 377

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             N+DTQSYVLNFHGRVTQASVKNFQI+H NDP+YIV+QFGR ++DVFT+DY YPLC LQAF
Sbjct:   378 NDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDYIVMQFGRVADDVFTLDYNYPLCALQAF 437

Query:   289 SIALSSFDSKLACE 302
             +I LSSFDSKLACE
Sbjct:   438 AIGLSSFDSKLACE 451

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001843 "neural tube closure" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0007420 "brain development" evidence=ISO

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=ISO

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISO

GO:0021904 "dorsal/ventral neural tube patterning" evidence=ISO

GO:0021914 "negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning" evidence=ISO

GO:0021915 "neural tube development" evidence=ISO

GO:0021953 "central nervous system neuron differentiation" evidence=ISO

GO:0031076 "embryonic camera-type eye development" evidence=ISO

GO:0035085 "cilium axoneme" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=ISO

GO:0042733 "embryonic digit morphogenesis" evidence=ISO

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISO

GO:0048702 "embryonic neurocranium morphogenesis" evidence=ISO

GO:0060173 "limb development" evidence=ISO

GO:0060434 "bronchus morphogenesis" evidence=ISO

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0030991 "intraflagellar transport particle A" evidence=ISO

MGI|MGI:109571 Tulp1 "tubby like protein 1" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 92/134 (68%), Positives = 110/134 (82%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
             +TNVLGF+GPR+MTV+IPGM    ERV I P   S+ L+  W +K ++++IELHNK P W
Sbjct:   410 ETNVLGFRGPRRMTVIIPGMNSDNERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPIW 469

Query:   229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
             NED+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct:   470 NEDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 529

Query:   289 SIALSSFDSKLACE 302
             +IALSSFD KLACE
Sbjct:   530 AIALSSFDGKLACE 543

GO:0001750 "photoreceptor outer segment" evidence=IDA

GO:0001917 "photoreceptor inner segment" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016358 "dendrite development" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IMP

GO:0042995 "cell projection" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0050766 "positive regulation of phagocytosis" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0051015 "actin filament binding" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=IMP

UNIPROTKB|B3MDU3 king-tubby "Protein king tubby" [Drosophila ananassae (taxid:7217)]

 Score = 559 (201.8 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
 Identities = 98/135 (72%), Positives = 119/135 (88%)

Query:   169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISET-LIECWNSKNMDNIIELHNKTPT 227
             DTN+LGFKGPR MTV++PGMT+  +RV I+  +  +  +++ W  KNMDNI+ELHNKTP 
Sbjct:   315 DTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDLWKMKNMDNIVELHNKTPV 374

Query:   228 WNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287
             WN++TQSYVLNFHGRVTQASVKNFQ++HD+DPEYIV+QFGRTSEDVFTMDYRYPLC +QA
Sbjct:   375 WNDETQSYVLNFHGRVTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQA 434

Query:   288 FSIALSSFDSKLACE 302
             F+IALSSFD K+ACE
Sbjct:   435 FAIALSSFDGKIACE 449

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86PC9	TULP_DROME	No assigned EC number	0.7259	0.4437	0.2913	yes	N/A
P50586	TUB_MOUSE	No assigned EC number	0.7537	0.4437	0.2653	yes	N/A
O88808	TUB_RAT	No assigned EC number	0.7537	0.4437	0.2653	yes	N/A
Q28X18	TULP_DROPS	No assigned EC number	0.7259	0.4437	0.3004	yes	N/A
P50607	TUB_HUMAN	No assigned EC number	0.7611	0.4437	0.2648	yes	N/A
Q7PZK5	TULP_ANOGA	No assigned EC number	0.7313	0.4304	0.2908	yes	N/A
Q09306	TUB1_CAEEL	No assigned EC number	0.5971	0.4437	0.3145	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
pfam01167	243	pfam01167, Tub, Tub family	1e-79
pfam01167	243	pfam01167, Tub, Tub family	1e-12

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  241 bits (617), Expect = 1e-79
 Identities = 85/128 (66%), Positives = 106/128 (82%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGF+GPRKMTV++PG+  S+ERV I PL   E+L+  W +KN ++++ LHNK P W
Sbjct: 116 ETNVLGFRGPRKMTVIMPGIPSSHERVPIQPLNDQESLLSRWQNKNKESLLVLHNKAPRW 175

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+  QSYVLNFHGRVTQASVKNFQI+H +DP+YIVLQFGR ++D+FTMDYRYPL   QAF
Sbjct: 176 NDQLQSYVLNFHGRVTQASVKNFQIVHASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAF 235

Query: 289 SIALSSFD 296
           +I LSSFD
Sbjct: 236 AICLSSFD 243

Length = 243

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 23/38 (60%), Positives = 31/38 (81%)

Query: 131 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK 168
           PA +  + +CRITRD+ G+D GL+PTY+LHLER+ GKK
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKK 38

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG2502|consensus	355		100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503|consensus	565		99.81
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	98.17

>KOG2502|consensus

Probab=100.00  E-value=1.4e-73  Score=544.67  Aligned_cols=180  Identities=57%  Similarity=0.985  Sum_probs=174.2

Q ss_pred             hhhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce----------------------------------
Q psy17674        123 NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK----------------------------------  168 (302)
Q Consensus       123 ~l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk----------------------------------  168 (302)
                      +++.||++|+|+|.++||+|+|||+||++||||.||+||+.++++|                                  
T Consensus       101 ~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvG  180 (355)
T KOG2502|consen  101 TFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVG  180 (355)
T ss_pred             chhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceee
Confidence            8999999999999999999999999999999999999998755332                                  


Q ss_pred             ---------------------------------------eeeecCCCCCceEEEEecCcCCC--CceeeeccCCchhhHH
Q psy17674        169 ---------------------------------------DTNVLGFKGPRKMTVLIPGMTQS--YERVSITPLEISETLI  207 (302)
Q Consensus       169 ---------------------------------------e~NVlg~kGPRkM~viIP~~~~~--~~r~~~~P~~e~~sLl  207 (302)
                                                             |+||||++|||+|+|++||+...  ++++..+|..++.+++
T Consensus       181 klRSN~lGTKFtVyD~g~~~~r~~~~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~~~~~v~~q~~~~~~~~l  260 (355)
T KOG2502|consen  181 KLRSNLLGTKFTVYDNGVNPSRRFNKVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSAPGGRVPVQPENDHPSLL  260 (355)
T ss_pred             eeecccccceEEEecCCCCcccccccCCcccceeeEEEEeeccccccCCceeEEeccCCCCCCCCCcccccccccccchh
Confidence                                                   89999999999999999999988  8899999999999999


Q ss_pred             HHhhcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHH
Q psy17674        208 ECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA  287 (302)
Q Consensus       208 ~~~~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQA  287 (302)
                      .+|++++++.+++|+||+|+||+++||||||||||||+||||||||||..++++||||||||++|+|||||+||||+|||
T Consensus       261 ~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~~p~~iiLQFGrV~kD~FTmDYrYPlSa~QA  340 (355)
T KOG2502|consen  261 FRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHALDPEYIILQFGRVGKDVFTMDYRYPLSAFQA  340 (355)
T ss_pred             hhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccCCCCEEEEEeeeeccceeeecccCccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccccccC
Q psy17674        288 FSIALSSFDSKLACE  302 (302)
Q Consensus       288 FaIaLSSfd~KlaCe  302 (302)
                      |||||||||+|||||
T Consensus       341 FaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  341 FAICLSSFDTKLACE  355 (355)
T ss_pred             HHHHHHhccccccCC
Confidence            999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=2e-60  Score=437.62  Aligned_cols=166  Identities=58%  Similarity=0.993  Sum_probs=138.3

Q ss_pred             cCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce------------------------------------------
Q psy17674        131 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK------------------------------------------  168 (302)
Q Consensus       131 P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk------------------------------------------  168 (302)
                      |||+|++|||+|+|||+|++++|||.|||||+.++|++                                          
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT   80 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT   80 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence            89999999999999999999999999999999777653                                          


Q ss_pred             ---------------------------------eeeecCCCCCceEEEEecCcCCCCc----eeeeccCC-chhhHHHHh
Q psy17674        169 ---------------------------------DTNVLGFKGPRKMTVLIPGMTQSYE----RVSITPLE-ISETLIECW  210 (302)
Q Consensus       169 ---------------------------------e~NVlg~kGPRkM~viIP~~~~~~~----r~~~~P~~-e~~sLl~~~  210 (302)
                                                       ++||||++|||+|+|+||++..++.    ++.+.|.+ +.++++.++
T Consensus        81 ~F~iyD~g~~~~~~~~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~p~~~~~~~~~~~~  160 (246)
T PF01167_consen   81 EFTIYDNGPNPKKSKSISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQPLNQEKDSLLSRF  160 (246)
T ss_dssp             EEEEEESSB-CCCSTCCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B-----SS-CCCSHHHHH
T ss_pred             EEEEECCCCCCccccccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeeeccccccccccccc
Confidence                                             8999999999999999999998876    67778876 677899999


Q ss_pred             hcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHHHHH
Q psy17674        211 NSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSI  290 (302)
Q Consensus       211 ~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaI  290 (302)
                      .+...+++++|+||+|+||+++++|+|||+|||++|||||||||+++++++||||||||++|+|+|||+|||||+|||||
T Consensus       161 ~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i  240 (246)
T PF01167_consen  161 QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPSDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAI  240 (246)
T ss_dssp             HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTTBTTSESEEEEEEETTEEEEEEETT-BHHHHHHH
T ss_pred             cccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccCCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHH
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCc
Q psy17674        291 ALSSFD  296 (302)
Q Consensus       291 aLSSfd  296 (302)
                      ||||||
T Consensus       241 ~lssfd  246 (246)
T PF01167_consen  241 ALSSFD  246 (246)
T ss_dssp             HHHHHH
T ss_pred             HHhcCC
Confidence            999997

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503|consensus

Probab=99.81  E-value=7.1e-21  Score=189.34  Aligned_cols=78  Identities=46%  Similarity=0.738  Sum_probs=72.1

Q ss_pred             ceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHHHHHHHHcCc
Q psy17674        217 NIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFD  296 (302)
Q Consensus       217 ~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaIaLSSfd  296 (302)
                      .+.++.||+|.|||.++-|+|||.||||+.|.|||||-...   ..|||||||+.+.|++||+||||+.||||+||++.-
T Consensus       485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~g---kQvmqFgRidg~aytldfqypfSa~QaFavalanvt  561 (565)
T KOG2503|consen  485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELFG---KQVMQFGRIDGPAYTLDFQYPFSAGQAFAVALANVT  561 (565)
T ss_pred             eEEEeecCCccccccceEEEeccCCccchhhhccceEeecc---hhhheeccccCCcccCCCCCchHHHHHHHHHHhhhh
Confidence            45699999999999999999999999999999999997764   479999999999999999999999999999999864


Q ss_pred             c
Q psy17674        297 S  297 (302)
Q Consensus       297 ~  297 (302)
                      -
T Consensus       562 q  562 (565)
T KOG2503|consen  562 Q  562 (565)
T ss_pred             h
Confidence            3

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=98.17  E-value=8.3e-06  Score=79.78  Aligned_cols=108  Identities=22%  Similarity=0.372  Sum_probs=77.2

Q ss_pred             CCCCCceEEEEecCcCCCCceeeeccCCc---hhhHHHHhhcCC------CC---ceeEeecCCCcccCCCCcEEeecCC
Q psy17674        174 GFKGPRKMTVLIPGMTQSYERVSITPLEI---SETLIECWNSKN------MD---NIIELHNKTPTWNEDTQSYVLNFHG  241 (302)
Q Consensus       174 g~kGPRkM~viIP~~~~~~~r~~~~P~~e---~~sLl~~~~~~~------~d---~~i~L~nK~P~wne~~~sy~LnF~G  241 (302)
                      ...++..++||||+..- +     -|..+   ..+||+||+++.      +|   .+.+|.|..-.          +-..
T Consensus       224 ~~~~~~s~tVvlP~G~H-g-----~P~~g~~~PS~LI~RWrSGG~CDCGGWDmgC~L~VL~n~~~~----------~~~~  287 (346)
T PF12043_consen  224 SNSSSCSTTVVLPSGVH-G-----LPNTGNGGPSSLIDRWRSGGSCDCGGWDMGCPLRVLSNQSQN----------SKKS  287 (346)
T ss_pred             CCCCCccEEEEecCCcc-C-----CCCCCCCCChHHHHHhhhCCCcCCCCcccCCCeEEeCCCCcc----------cccc
Confidence            34577899999997631 1     13333   578999999874      23   46677764422          1224


Q ss_pred             ccccccccceEEEeCCC-CCcEEEEEeeccCCeEEEEecCCCCHHHHHHHHHHcCcc
Q psy17674        242 RVTQASVKNFQIIHDND-PEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDS  297 (302)
Q Consensus       242 RVt~aSVKNFQLv~~~d-~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaIaLSSfd~  297 (302)
                      +.+.+.-+=|.|..... .+.-+|-+--|.++.|.++|+-.||+||||+||+|-+++
T Consensus       288 ~~~~~~~~~feLf~QG~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~  344 (346)
T PF12043_consen  288 SSSKESSHPFELFVQGSKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS  344 (346)
T ss_pred             ccccccCCceeeeecccccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence            45555667788876543 223799999999999999999999999999999987664

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		3e-59
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		9e-59
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		2e-58
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		4e-54
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		1e-50

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 116/134 (86%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERVSI P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 140 ETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVW 199
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 200 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 259
Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 260 AIALSSFDSKLACE 273

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  223 bits (568), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 115/134 (85%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERV I P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 132 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 191
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 192 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251
Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 252 AIALSSFDSKLACE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 115/134 (85%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERV I P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 132 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 191
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DT+SYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 192 NDDTESYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251
Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 252 AIALSSFDSKLACE 265

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  208 bits (529), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 111/134 (82%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGF+GPR+MTV+IPGM+   ERV I P   S+ L+  W +K ++++IELHNK P W
Sbjct: 143 ETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVW 202
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+D+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct: 203 NDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 262
Query: 289 SIALSSFDSKLACE 302
           +IALSSFD KLACE
Sbjct: 263 AIALSSFDGKLACE 276

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 106/128 (82%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGF+GPR+MTV+IPGM+   ERV I P   S+ L+  W +K ++++IELHNK P W
Sbjct: 119 ETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVW 178
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+D+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct: 179 NDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 238
Query: 289 SIALSSFD 296
           +IALSSFD
Sbjct: 239 AIALSSFD 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	2e-61
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	1e-08
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	5e-58
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  195 bits (496), Expect = 2e-61
 Identities = 91/134 (67%), Positives = 111/134 (82%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGF+GPR+MTV+IPGM+   ERV I P   S+ L+  W +K ++++IELHNK P W
Sbjct: 143 ETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVW 202

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+D+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct: 203 NDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 262

Query: 289 SIALSSFDSKLACE 302
           +IALSSFD KLACE
Sbjct: 263 AIALSSFDGKLACE 276

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 123 NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 164
               FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL+ +
Sbjct: 24  EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE 65

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  185 bits (471), Expect = 5e-58
 Identities = 86/128 (67%), Positives = 106/128 (82%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGF+GPR+MTV+IPGM+   ERV I P   S+ L+  W +K ++++IELHNK P W
Sbjct: 119 ETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVW 178

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+D+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct: 179 NDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 238

Query: 289 SIALSSFD 296
           +IALSSFD
Sbjct: 239 AIALSSFD 246

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 126 RFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTV 183
            FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL+ +   K   +L  +  ++   
Sbjct: 3   EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE---KKVFLLAGRKRKRSKT 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 51/283 (18%), Positives = 88/283 (31%), Gaps = 76/283 (26%)

Query: 57  TDTSDYGSGYPDRSSQDDEDD--DDDDEDDIEQELSDI-SLHRGSHVISDPDEINSGSLP 113
            +T ++   Y D      ED   D+ D  D++     I S     H+I   D ++     
Sbjct: 9   FETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 114 IEM----QGEVVGNLERFV---LEP----AAQKVSYKCRI----------TRDRKGVDRG 152
                  Q E+V   ++FV   L          +  + R            RDR   D  
Sbjct: 68  FWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 153 LYPTYFL-----------HLERDYGKKDTNVL--GFKGPRKMTVLIPGMTQSYERVSITP 199
           ++  Y +            L     +   NVL  G  G  K T +   +  SY+      
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMD 181

Query: 200 LEISETLIECW----NSKNMDNIIE-----LHNKTPTWN---EDTQSYVLNFHGRVTQAS 247
            +I       W    N  + + ++E     L+   P W    + + +  L  H    QA 
Sbjct: 182 FKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAE 233

Query: 248 VKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSI 290
           ++        +   +VL       +V             AF++
Sbjct: 234 LRRLLKSKPYENCLLVL------LNVQNAKA------WNAFNL 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=2e-72  Score=524.28  Aligned_cols=188  Identities=61%  Similarity=1.089  Sum_probs=151.8

Q ss_pred             cccccccchhhhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce-------------------------
Q psy17674        114 IEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK-------------------------  168 (302)
Q Consensus       114 ~~~~~~~~~~l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk-------------------------  168 (302)
                      ..+.++++ ||++||++|+|+|++|||+|+|||+|+++|+||+|||||+.+++++                         
T Consensus        16 ~~~~~~~~-~~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~~~fLLaarK~k~~~ts~YiIS~d~~dls   94 (276)
T 2fim_A           16 ENLYFQSM-EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLS   94 (276)
T ss_dssp             ----------CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECSSSCEEEEEEEECTTCSSCEEEEESCTTC--
T ss_pred             CccccCHH-HHHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeCCCCEEEEEEEeccCCCCceEEEEecchhcc
Confidence            56778888 9999999999999999999999999999999999999998655432                         


Q ss_pred             ------------------------------------------------eeeecCCCCCceEEEEecCcCCCCceeeeccC
Q psy17674        169 ------------------------------------------------DTNVLGFKGPRKMTVLIPGMTQSYERVSITPL  200 (302)
Q Consensus       169 ------------------------------------------------e~NVlg~kGPRkM~viIP~~~~~~~r~~~~P~  200 (302)
                                                                      |+||||++|||+|+|+||++..+++++.++|.
T Consensus        95 r~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~~~~~~~~~~p~  174 (276)
T 2fim_A           95 RGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPR  174 (276)
T ss_dssp             ----CEEEEEEECSSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC---------CCEEEEEECBCTTSCBCCCCCS
T ss_pred             cCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEecccCC
Confidence                                                            88999999999999999999999999999999


Q ss_pred             CchhhHHHHhhcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecC
Q psy17674        201 EISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRY  280 (302)
Q Consensus       201 ~e~~sLl~~~~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~y  280 (302)
                      ++.++|+.+|++++.+++++|+||+|+||+++++|||||+||||+|||||||||+++|+++||||||||++|+|+|||+|
T Consensus       175 ~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~d~~~ivlQFGKv~~d~FtmD~~y  254 (276)
T 2fim_A          175 NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY  254 (276)
T ss_dssp             STTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEECTTCTTSCSEEEEEEETTEEEEEECT
T ss_pred             CcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEeecCCCeEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHcCccccccC
Q psy17674        281 PLCPLQAFSIALSSFDSKLACE  302 (302)
Q Consensus       281 PlS~lQAFaIaLSSfd~KlaCe  302 (302)
                      ||||||||||||||||+|||||
T Consensus       255 PlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          255 PLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             TCCHHHHHHHHHHTCC------
T ss_pred             CCCHHHHHHHHHHhcccccccC
Confidence            9999999999999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=1.6e-68  Score=490.80  Aligned_cols=173  Identities=63%  Similarity=1.140  Sum_probs=157.4

Q ss_pred             hhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce-----------------------------------
Q psy17674        124 LERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK-----------------------------------  168 (302)
Q Consensus       124 l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk-----------------------------------  168 (302)
                      |++||++|+|+|++|||+|+|||+|+++|+||+||||++.+++++                                   
T Consensus         1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKL   80 (246)
T 3c5n_A            1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKL   80 (246)
T ss_dssp             CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEESSSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEE
T ss_pred             ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeCCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEE
Confidence            689999999999999999999999999999999999998654332                                   


Q ss_pred             --------------------------------------eeeecCCCCCceEEEEecCcCCCCceeeeccCCchhhHHHHh
Q psy17674        169 --------------------------------------DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECW  210 (302)
Q Consensus       169 --------------------------------------e~NVlg~kGPRkM~viIP~~~~~~~r~~~~P~~e~~sLl~~~  210 (302)
                                                            |+||||++|||+|+|+||++..+++++.++|.++.++++.+|
T Consensus        81 rsNf~Gt~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~~~~~~~~~~p~~~~~~~~~~~  160 (246)
T 3c5n_A           81 RSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRW  160 (246)
T ss_dssp             EECSSSSEEEEECSCBCGGGCTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBCTTSCBCCCCCSSTTSSHHHHH
T ss_pred             EEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEeeccCCCccccchhhh
Confidence                                                  889999999999999999999999999999999999999999


Q ss_pred             hcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHHHHH
Q psy17674        211 NSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSI  290 (302)
Q Consensus       211 ~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaI  290 (302)
                      ++++.+++++|+||+|+||+++++|||||+||||+|||||||||+++|+++||||||||++|+|+|||+|||||||||||
T Consensus       161 ~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI  240 (246)
T 3c5n_A          161 QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAI  240 (246)
T ss_dssp             HHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEBTTBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHH
T ss_pred             hccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCc
Q psy17674        291 ALSSFD  296 (302)
Q Consensus       291 aLSSfd  296 (302)
                      ||||||
T Consensus       241 ~LsSfD  246 (246)
T 3c5n_A          241 ALSSFD  246 (246)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	2e-65
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	2e-12

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  204 bits (519), Expect = 2e-65
 Identities = 101/134 (75%), Positives = 115/134 (85%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERV I P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 132 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 191

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 192 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 252 AIALSSFDSKLACE 265

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 121 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK 168
           V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK
Sbjct: 7   VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKK 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-67  Score=482.13  Aligned_cols=187  Identities=71%  Similarity=1.194  Sum_probs=180.5

Q ss_pred             ccccccchhhhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce--------------------------
Q psy17674        115 EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK--------------------------  168 (302)
Q Consensus       115 ~~~~~~~~~l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk--------------------------  168 (302)
                      .+.++|+ ||++||++|+|+|++|||+|+|||+|+++++||+|||||+.++|+.                          
T Consensus         2 ~~~~~~~-~~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~   80 (265)
T d1c8za_           2 SVDIEVQ-DLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDL   80 (265)
T ss_dssp             CCCCCCC-SHHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTTSCEEEEEEEEEEESSSSEEEEEESCHHHH
T ss_pred             Ccccchh-hHHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCCCceeEEEEEeeecCCCcceEEEEccHHHh
Confidence            3567888 9999999999999999999999999999999999999998776652                          


Q ss_pred             ---------------------------------------------------eeeecCCCCCceEEEEecCcCCCCceeee
Q psy17674        169 ---------------------------------------------------DTNVLGFKGPRKMTVLIPGMTQSYERVSI  197 (302)
Q Consensus       169 ---------------------------------------------------e~NVlg~kGPRkM~viIP~~~~~~~r~~~  197 (302)
                                                                         |+||||++|||+|+|+||++..++++..+
T Consensus        81 sr~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~~~~~~  160 (265)
T d1c8za_          81 SRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCI  160 (265)
T ss_dssp             TTTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTTGGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTSCBCCC
T ss_pred             cccccceeEEeeccccCCEEEEecCCCCcccccccccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcccccccc
Confidence                                                               89999999999999999999999999999


Q ss_pred             ccCCchhhHHHHhhcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEE
Q psy17674        198 TPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMD  277 (302)
Q Consensus       198 ~P~~e~~sLl~~~~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lD  277 (302)
                      +|.++.++++.+|++++.+.+++|+||+|+||+++++|+|||+|||++|||||||||++++++.+|||||||++++|+||
T Consensus       161 ~p~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~SvKNFql~~~~~~~~~~lqfgKv~~~~f~~d  240 (265)
T d1c8za_         161 RPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMD  240 (265)
T ss_dssp             CCSSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECBTTEEEEECTTCTTSCSEEEEEEETTEEEEE
T ss_pred             CCCCcchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEeccccceEEEEeCCCCCEEEEEEEEccCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHHcCccccccC
Q psy17674        278 YRYPLCPLQAFSIALSSFDSKLACE  302 (302)
Q Consensus       278 f~yPlS~lQAFaIaLSSfd~KlaCe  302 (302)
                      |+|||||+|||||||||||+|||||
T Consensus       241 ~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         241 YNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             ECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             ecCCCCHHHHHHHHHHHhccccccC
Confidence            9999999999999999999999998