Psyllid ID: psy17689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Secondary Structure (PSIPRED)
ccccccccccccccEEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccEEccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccEEEccccHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccHHHEEEcccHHHHHHHHHHHHHHHcccHHHcEccEEEccccccEEcHHHcEEccEEHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEEEcc
Coil and Loop (DISEMBL)
vlttndhssfkgvNVLTRLNYALSEGSRIVIVTAGvrqregesrlSLVERNVNIFKgiipnivkyspqctllivsnPVDILTYVSWKlsgfpknrvigsgtnlDSMRFRVLLAQklglspesvYGFIIgehgdssvpvwsgvnvagvnlrevnpaigtegdteefgKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Flexible Loop (DISEMBL)
vlttndhssfkgvNVLTRLnyalsegsrivivtagvrqregesrlslvernVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAigtegdteefgkLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Low Complexity Region (SEG)
VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Disordered region (IsUnstruct)
*********FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIST***
Disordered Region (DISOPRED)
VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Disordered Region (DISEMBL)
********SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Disordered Region (DISPRO)
VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
P13743	333	L-lactate dehydrogenase B	N/A	N/A	0.912	0.591	0.670	1e-79
P04642	332	L-lactate dehydrogenase A	yes	N/A	0.958	0.623	0.632	2e-79
P00337	333	L-lactate dehydrogenase B	yes	N/A	0.912	0.591	0.670	4e-79
Q9PW61	331	L-lactate dehydrogenase A	N/A	N/A	1.0	0.652	0.620	6e-79
O93538	331	L-lactate dehydrogenase A	N/A	N/A	1.0	0.652	0.615	6e-79
Q9XT87	332	L-lactate dehydrogenase A	yes	N/A	0.958	0.623	0.637	7e-79
O93544	331	L-lactate dehydrogenase A	N/A	N/A	1.0	0.652	0.620	7e-79
P79912	332	L-lactate dehydrogenase A	N/A	N/A	0.912	0.593	0.659	8e-79
O93540	331	L-lactate dehydrogenase A	N/A	N/A	1.0	0.652	0.615	9e-79
Q9YI05	334	L-lactate dehydrogenase B	N/A	N/A	0.958	0.619	0.632	1e-78

>sp|P13743|LDHB_ANAPL L-lactate dehydrogenase B chain OS=Anas platyrhynchos GN=LDHB PE=1 SV=2

 Score =  296 bits (757), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 172/197 (87%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA++  S+IV+VTAGVRQ+EGESRL+LV+RNV +FKGIIP IVKYSP CT+L+VSNPVD
Sbjct: 82  DYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVGVFKGIIPQIVKYSPNCTILVVSNPVD 141

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSCHGWILGEHGDSSVAVW 201

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+E+NPA+GT+ D+E + ++H  VV SAYE+IRLKGYT+WAIGLS+A L  
Sbjct: 202 SGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLKGYTNWAIGLSVAELCE 261

Query: 200 TLLNNTNKIHAISTLIQ 216
           T+L N  ++H++STL++
Sbjct: 262 TMLKNLCRVHSVSTLVK 278

In duck lens LDH-B is used as a crystallin: epsilon-crystallin.
Anas platyrhynchos (taxid: 8839)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 7

>sp|P04642|LDHA_RAT L-lactate dehydrogenase A chain OS=Rattus norvegicus GN=Ldha PE=1 SV=1

 Score =  295 bits (754), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 174/207 (84%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   +++  +Y+++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC
Sbjct: 72  LKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++G
Sbjct: 132 KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+A L  +++ N  ++H IST+I+
Sbjct: 252 IGLSVADLAESIMKNLRRVHPISTMIK 278

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P00337|LDHB_CHICK L-lactate dehydrogenase B chain OS=Gallus gallus GN=LDHB PE=1 SV=3

 Score =  293 bits (751), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 172/197 (87%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP CT+L+VSNPVD
Sbjct: 82  DYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCTILVVSNPVD 141

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSCHGWILGEHGDSSVAVW 201

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+E+NPA+GT+ D+E + ++H  VV SAYE+IRLKGYT+WAIGLS+A L  
Sbjct: 202 SGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLKGYTNWAIGLSVAELCE 261

Query: 200 TLLNNTNKIHAISTLIQ 216
           T+L N  ++H++STL++
Sbjct: 262 TMLKNLYRVHSVSTLVK 278

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9PW61|LDHA_DISEL L-lactate dehydrogenase A chain OS=Dissostichus eleginoides GN=ldha PE=2 SV=3

 Score =  293 bits (750), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 134/216 (62%), Positives = 175/216 (81%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V+     S F    ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIP
Sbjct: 62  VMDLQHGSLFLKTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIP 121

Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
           NIVKYSP C L++VSNPVDILTYV+WKLSGFP+NRVIGSGTNLDS RFR L+ +KL L P
Sbjct: 122 NIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRNRVIGSGTNLDSARFRHLIGEKLHLHP 181

Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
            S + +I+GEHGDSSVPVWSGVNVAGV+L+ +NP +GTEGD E +  +H +VV+ AYE+I
Sbjct: 182 SSCHAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVI 241

Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           +LKGYTSWAIG+S+A L  +++ N +K+H +STL+Q
Sbjct: 242 KLKGYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQ 277

Dissostichus eleginoides (taxid: 100907)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|O93538|LDHA_PARCR L-lactate dehydrogenase A chain OS=Parachaenichthys charcoti GN=ldha PE=2 SV=3

 Score =  293 bits (750), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 176/216 (81%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V+     S F    ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIP
Sbjct: 62  VMDLQHGSLFLKTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIP 121

Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
           NIVKYSP C L++VSNPVDILTYV+WKLSGFP++RVIGSGTNLDS RFR L+ +KL L P
Sbjct: 122 NIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHP 181

Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
            S + +I+GEHGDSSVPVWSGVNVAGV+L+++NP +GTEGD E +  +H +VV+ AYE+I
Sbjct: 182 SSCHAWIVGEHGDSSVPVWSGVNVAGVSLQDLNPQMGTEGDGENWKAIHKEVVDGAYEVI 241

Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           +LKGYTSWAIG+S+A L  +++ N +K+H +STL+Q
Sbjct: 242 KLKGYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQ 277

Parachaenichthys charcoti (taxid: 36187)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9XT87|LDHA_MONDO L-lactate dehydrogenase A chain OS=Monodelphis domestica GN=LDHA PE=2 SV=3

 Score =  293 bits (750), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 132/207 (63%), Positives = 173/207 (83%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   +++  +YA++  S++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVKYSP C
Sbjct: 72  LKTPKIVSSKDYAVTANSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LL+VSNPVDILTYV+WKLSGFPKNRVIGSG NLDS RFR L+ +KLG+   S +G+I+G
Sbjct: 132 KLLVVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGEKLGIHSSSCHGWILG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV+L+ ++PA+GT+ D+E++  +H  VV SAYE+I+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVSLKSLHPALGTDSDSEQWKDVHKQVVESAYEVIKLKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+A L  +++ N  ++H IST+I+
Sbjct: 252 IGLSVADLAESIMKNLRRVHPISTMIK 278

Monodelphis domestica (taxid: 13616)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|O93544|LDHA_DISMA L-lactate dehydrogenase A chain OS=Dissostichus mawsoni GN=ldha PE=2 SV=3

 Score =  293 bits (750), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 134/216 (62%), Positives = 175/216 (81%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V+     S F    ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIP
Sbjct: 62  VMDLQHGSLFLKTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIP 121

Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
           NIVKYSP C L++VSNPVDILTYV+WKLSGFP+NRVIGSGTNLDS RFR L+ +KL L P
Sbjct: 122 NIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRNRVIGSGTNLDSARFRHLIGEKLHLHP 181

Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
            S + +I+GEHGDSSVPVWSGVNVAGV+L+ +NP +GTEGD E +  +H +VV+ AYE+I
Sbjct: 182 SSCHAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVI 241

Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           +LKGYTSWAIG+S+A L  +++ N +K+H +STL+Q
Sbjct: 242 KLKGYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQ 277

Dissostichus mawsoni (taxid: 36200)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P79912|LDHA_SCEWO L-lactate dehydrogenase A chain OS=Sceloporus woodi GN=LDHA PE=2 SV=4

 Score =  293 bits (749), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 171/197 (86%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LL+VSNPVD
Sbjct: 82  DYAVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCKLLVVSNPVD 141

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WK+SGFPK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSVPVW
Sbjct: 142 ILTYVAWKISGFPKHRVIGSGCNLDSARFRHLMAEKLGIHPLSCHGWIVGEHGDSSVPVW 201

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+ ++P +GT+GD E + ++H  VV+SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 202 SGVNVAGVSLKGLHPDMGTDGDKENWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 261

Query: 200 TLLNNTNKIHAISTLIQ 216
           T++ N  ++H +ST+++
Sbjct: 262 TIMKNLRRVHPVSTMVK 278

Sceloporus woodi (taxid: 59726)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|O93540|LDHA_GOBGI L-lactate dehydrogenase A chain OS=Gobionotothen gibberifrons GN=ldha PE=2 SV=3

 Score =  293 bits (749), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 176/216 (81%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V+     S F    ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIP
Sbjct: 62  VMDLQHGSLFLKTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIP 121

Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
           NIVKYSP C L++VSNPVDILTYV+WKLSGFP++RVIGSGTNLDS RFR L+ +KL L P
Sbjct: 122 NIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHP 181

Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
            S + +I+GEHGDSSVPVWSGVNVAGV+L+ +NP +GTEGD E++  +H +VV+ AYE+I
Sbjct: 182 SSCHAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGEDWKAIHKEVVDGAYEVI 241

Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           +LKGYTSWAIG+S+A L  +++ N +K+H +STL+Q
Sbjct: 242 KLKGYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQ 277

Gobionotothen gibberifrons (taxid: 36202)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9YI05|LDHB_SQUAC L-lactate dehydrogenase B chain OS=Squalus acanthias GN=ldhb PE=2 SV=1

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 170/207 (82%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   ++   +Y ++  SR+V+VTAG RQ+EGESRL+LV+RNVNIFK IIP IVKYSP C
Sbjct: 73  LKTPKIMANKDYGITANSRVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPQIVKYSPNC 132

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
           T+++VSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+A+KLGL P S +G+++G
Sbjct: 133 TIIVVSNPVDILTYVTWKISGFPKNRVIGSGCNLDSARFRYLMAEKLGLHPSSCHGWVLG 192

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV L+++NP IGT  D E +  +H  VV SAYE+I+LKGYT+WA
Sbjct: 193 EHGDSSVPVWSGVNVAGVGLQQLNPDIGTAQDKENWKDVHKMVVESAYEVIKLKGYTNWA 252

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+A LT +++ N  ++H +ST+++
Sbjct: 253 IGLSVAELTESMVKNLKRVHPVSTMVK 279

Squalus acanthias (taxid: 7797)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
58385914	332	AGAP004880-PB [Anopheles gambiae str. PE	0.958	0.623	0.681	1e-81
170063026	331	l-lactate dehydrogenase [Culex quinquefa	0.953	0.622	0.669	5e-81
170058421	331	l-lactate dehydrogenase [Culex quinquefa	0.953	0.622	0.665	8e-81
157131170	331	l-lactate dehydrogenase [Aedes aegypti]	0.953	0.622	0.679	9e-81
312381230	479	hypothetical protein AND_06519 [Anophele	0.925	0.417	0.7	6e-80
330371803	332	lactate dehydrogenase [Litopenaeus vanna	0.958	0.623	0.666	1e-78
330371799	332	lactate dehydrogenase [Litopenaeus vanna	0.958	0.623	0.666	1e-78
330371801	332	lactate dehydrogenase [Litopenaeus vanna	0.958	0.623	0.666	1e-78
330371797	332	lactate dehydrogenase [Litopenaeus vanna	0.958	0.623	0.661	3e-78
126038	333	RecName: Full=L-lactate dehydrogenase B	0.912	0.591	0.670	5e-78

>gi|58385914|ref|XP_314306.2| AGAP004880-PB [Anopheles gambiae str. PEST] gi|158292996|ref|XP_001688555.1| AGAP004880-PC [Anopheles gambiae str. PEST] gi|158292998|ref|XP_001688556.1| AGAP004880-PA [Anopheles gambiae str. PEST] gi|55240259|gb|EAA09690.2| AGAP004880-PB [Anopheles gambiae str. PEST] gi|157016894|gb|EDO64032.1| AGAP004880-PC [Anopheles gambiae str. PEST] gi|157016895|gb|EDO64033.1| AGAP004880-PA [Anopheles gambiae str. PEST]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 174/207 (84%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K  +V    ++++S GSR++++TAGVRQ+EGESRL LV+RN +I KGIIP +V  SP C
Sbjct: 72  MKNAHVSAGTDFSVSAGSRLIVITAGVRQKEGESRLDLVQRNTDILKGIIPKLVAQSPDC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LL+VSNPVDILTYV+WKLSG PKNRVIGSGTNLDS RFR L++QKLG++P S +G+IIG
Sbjct: 132 ILLVVSNPVDILTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQKLGVAPTSCHGWIIG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV L E+NP+IGT+ DTE++G LH  VVNSAYE+IRLKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVRLAEINPSIGTDADTEKWGDLHHQVVNSAYEVIRLKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+ASL   +L NT  +HA+STL++
Sbjct: 252 IGLSVASLASAILRNTYNVHAVSTLVK 278

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063026|ref|XP_001866924.1| l-lactate dehydrogenase [Culex quinquefasciatus] gi|167880810|gb|EDS44193.1| l-lactate dehydrogenase [Culex quinquefasciatus]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 138/206 (66%), Positives = 175/206 (84%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   V    ++A+S GSR++++TAGVRQ+EGESRL+LV+RN +I KGIIP +V++SP C
Sbjct: 71  MKNAQVQASTDFAVSAGSRLIVITAGVRQKEGESRLNLVQRNCDILKGIIPKLVEHSPDC 130

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LL+VSNPVDI+TYV+WK+SG PKNRVIGSGTNLDS RFR L++Q+LG++P S +G+IIG
Sbjct: 131 ILLMVSNPVDIMTYVAWKISGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWIIG 190

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV L E+NP+IGT  D E++G+LH +VVNSAYE+I+LKGYTSWA
Sbjct: 191 EHGDSSVPVWSGVNVAGVRLAEINPSIGTADDDEKWGELHHEVVNSAYEVIKLKGYTSWA 250

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLI 215
           IGLS+ASL   LL NT  +HA+STL+
Sbjct: 251 IGLSVASLASALLRNTYNVHAVSTLV 276

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058421|ref|XP_001864915.1| l-lactate dehydrogenase [Culex quinquefasciatus] gi|167877547|gb|EDS40930.1| l-lactate dehydrogenase [Culex quinquefasciatus]

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 137/206 (66%), Positives = 175/206 (84%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   +    ++A+S GSR++++TAGVRQ+EGESRL+LV+RN +I KGIIP +V++SP C
Sbjct: 71  MKNAQIQASTDFAVSAGSRLIVITAGVRQKEGESRLNLVQRNCDILKGIIPKLVEHSPDC 130

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LL+VSNPVDI+TYV+WK+SG PKNRVIGSGTNLDS RFR L++Q+LG++P S +G+IIG
Sbjct: 131 ILLMVSNPVDIMTYVAWKISGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWIIG 190

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV L E+NP+IGT  D E++G+LH +VVNSAYE+I+LKGYTSWA
Sbjct: 191 EHGDSSVPVWSGVNVAGVRLAEINPSIGTADDDEKWGELHHEVVNSAYEVIKLKGYTSWA 250

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLI 215
           IGLS+ASL   LL NT  +HA+STL+
Sbjct: 251 IGLSVASLASALLRNTYNVHAVSTLV 276

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131170|ref|XP_001662150.1| l-lactate dehydrogenase [Aedes aegypti] gi|108871618|gb|EAT35843.1| AAEL012014-PA [Aedes aegypti]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 174/206 (84%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   +    ++A+S GSR++++TAGVRQ+EGESRL+LV+RN +I KGIIP +V+ SP C
Sbjct: 71  MKNAQINASTDFAVSAGSRLIVITAGVRQKEGESRLNLVQRNCDILKGIIPKLVELSPDC 130

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LL+VSNPVDILTYV+WKLSG PKNRVIGSGTNLDS RFR L++Q+LG++P S +G+IIG
Sbjct: 131 ILLVVSNPVDILTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWIIG 190

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV L E+NP+IGT  D E++G+LH +VVNSAYE+IRLKGYTSWA
Sbjct: 191 EHGDSSVPVWSGVNVAGVRLSELNPSIGTADDEEKWGELHYEVVNSAYEVIRLKGYTSWA 250

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLI 215
           IGLS+ASL   LL NT  +HA+STL+
Sbjct: 251 IGLSVASLASALLRNTYNVHAVSTLV 276

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381230|gb|EFR27023.1| hypothetical protein AND_06519 [Anopheles darlingi]

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/200 (70%), Positives = 168/200 (84%)

Query: 16  LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
           + ++      GSR++++TAGVRQ+EGESRL LV+RN +I KGIIP +V  SP C LL+VS
Sbjct: 191 MEKIRCQEDAGSRLIVITAGVRQKEGESRLDLVQRNTDILKGIIPKLVAQSPDCILLVVS 250

Query: 76  NPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
           NPVDILTYV+WKLSG PKNRVIGSGTNLDS RFR L++QKLG++P S +G+IIGEHGDSS
Sbjct: 251 NPVDILTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQKLGVAPTSCHGWIIGEHGDSS 310

Query: 136 VPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIA 195
           VPVWSGVNVAGV L E+NPAIGT  DTE++G LH +VVNSAYE+IRLKGYTSWAIGLS+A
Sbjct: 311 VPVWSGVNVAGVRLAEINPAIGTSDDTEKWGDLHHEVVNSAYEVIRLKGYTSWAIGLSVA 370

Query: 196 SLTYTLLNNTNKIHAISTLI 215
           SL   LL NT  +HA+STL+
Sbjct: 371 SLASALLRNTYNVHAVSTLV 390

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330371803|gb|AEC12822.1| lactate dehydrogenase [Litopenaeus vannamei]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/207 (66%), Positives = 170/207 (82%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            + V +    +YA++ GSR+ IVTAG RQREGESRLSLV+RNV+IFKG+IP +VK+SP C
Sbjct: 72  LRNVKIDANTDYAVTAGSRVCIVTAGARQREGESRLSLVQRNVDIFKGMIPQLVKHSPNC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WKLSG PK+ VIGSGTNLDS RFR  L+QKL ++P S +G+IIG
Sbjct: 132 ILLIVSNPVDILTYVAWKLSGLPKHHVIGSGTNLDSARFRFHLSQKLSVAPSSTHGWIIG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV LR++NP +GT  D E++ +LH DVVNSAYEII+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVRLRDLNPKVGTPEDPEKYDELHKDVVNSAYEIIKLKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+ASL  +++ N    +A+S  +Q
Sbjct: 252 IGLSVASLVSSIVKNMRACYAVSVAVQ 278

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330371799|gb|AEC12820.1| lactate dehydrogenase [Litopenaeus vannamei] gi|385211790|gb|AFI47929.1| L-lactate dehydrogenase isoform 1 [Litopenaeus vannamei]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/207 (66%), Positives = 170/207 (82%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            + V +    +YA++ GSR+ IVTAG RQREGESRLSLV+RNV+IFKG+IP +VK+SP C
Sbjct: 72  LRNVKIDANTDYAVTAGSRVCIVTAGARQREGESRLSLVQRNVDIFKGMIPQLVKHSPNC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WKLSG PK+ VIGSGTNLDS RFR  L+QKL ++P S +G+IIG
Sbjct: 132 ILLIVSNPVDILTYVAWKLSGLPKHHVIGSGTNLDSARFRFHLSQKLSVAPSSTHGWIIG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV LR++NP +GT  D E++ +LH DVVNSAYEII+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVRLRDLNPKVGTPEDPEKYDELHKDVVNSAYEIIKLKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+ASL  +++ N    +A+S  +Q
Sbjct: 252 IGLSVASLVSSIVKNMRACYAVSVAVQ 278

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330371801|gb|AEC12821.1| lactate dehydrogenase [Litopenaeus vannamei]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/207 (66%), Positives = 170/207 (82%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            + V +    +YA++ GSR+ IVTAG RQREGESRLSLV+RNV+IFKG+IP +VK+SP C
Sbjct: 72  LRNVKIDANTDYAVTAGSRVCIVTAGARQREGESRLSLVQRNVDIFKGMIPQLVKHSPNC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WKLSG PK+ VIGSGTNLDS RFR  L+QKL ++P S +G+IIG
Sbjct: 132 ILLIVSNPVDILTYVAWKLSGLPKHHVIGSGTNLDSARFRFHLSQKLSVAPSSTHGWIIG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV LR++NP +GT  D E++ +LH DVVNSAYEII+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVRLRDLNPKVGTPEDPEKYDELHKDVVNSAYEIIKLKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+ASL  +++ N    +A+S  +Q
Sbjct: 252 IGLSVASLVSSIVKNMRACYAVSVAVQ 278

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330371797|gb|AEC12819.1| lactate dehydrogenase [Litopenaeus vannamei] gi|385211791|gb|AFI47930.1| L-lactate dehydrogenase isoform 2 [Litopenaeus vannamei]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/207 (66%), Positives = 169/207 (81%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            + V +    +YA++ GSR+ IVTAG RQREGESRLSLV+RNV+IFKG+IP +VK+SP C
Sbjct: 72  LRNVKIDANTDYAVTAGSRVCIVTAGARQREGESRLSLVQRNVDIFKGMIPQLVKHSPNC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WKLSG PK+ VIGSGTNLDS RFR  L+QKL ++P S +G+IIG
Sbjct: 132 ILLIVSNPVDILTYVAWKLSGLPKHHVIGSGTNLDSARFRFHLSQKLSVAPSSTHGWIIG 191

Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV LR++NP +GT  D E++ +LH DVVNSAYE+I++KGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVRLRDLNPKVGTPEDPEKYDELHKDVVNSAYEVIKMKGYTSWA 251

Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IG S A LT  +L N   ++A+ST +Q
Sbjct: 252 IGTSCAVLTRAILTNQRTVYAVSTSVQ 278

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126038|sp|P13743.2|LDHB_ANAPL RecName: Full=L-lactate dehydrogenase B chain; Short=LDH-B; AltName: Full=Epsilon-crystallin

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 172/197 (87%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA++  S+IV+VTAGVRQ+EGESRL+LV+RNV +FKGIIP IVKYSP CT+L+VSNPVD
Sbjct: 82  DYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVGVFKGIIPQIVKYSPNCTILVVSNPVD 141

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSCHGWILGEHGDSSVAVW 201

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+E+NPA+GT+ D+E + ++H  VV SAYE+IRLKGYT+WAIGLS+A L  
Sbjct: 202 SGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLKGYTNWAIGLSVAELCE 261

Query: 200 TLLNNTNKIHAISTLIQ 216
           T+L N  ++H++STL++
Sbjct: 262 TMLKNLCRVHSVSTLVK 278

Source: Anas platyrhynchos

Species: Anas platyrhynchos

Genus: Anas

Family: Anatidae

Order: Anseriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
ZFIN|ZDB-GENE-040718-176	388	ldhbb "lactate dehydrogenase B	0.736	0.409	0.647	4.6e-78
RGD|2996	332	Ldha "lactate dehydrogenase A"	0.972	0.632	0.627	5.3e-72
UNIPROTKB|P00337	333	LDHB "L-lactate dehydrogenase	0.912	0.591	0.670	1.1e-71
ZFIN|ZDB-GENE-991026-5	333	ldha "lactate dehydrogenase A4	0.972	0.630	0.622	4.8e-71
MGI|MGI:96759	332	Ldha "lactate dehydrogenase A"	0.972	0.632	0.622	7.7e-71
ZFIN|ZDB-GENE-991026-6	334	ldhba "lactate dehydrogenase B	0.972	0.628	0.627	7.7e-71
UNIPROTKB|P19858	332	LDHA "L-lactate dehydrogenase	0.935	0.608	0.643	9.9e-71
MGI|MGI:96763	334	Ldhb "lactate dehydrogenase B"	0.912	0.589	0.654	1.3e-70
RGD|2997	334	Ldhb "lactate dehydrogenase B"	0.912	0.589	0.654	1.3e-70
UNIPROTKB|E2RA64	279	LDHA "L-lactate dehydrogenase"	0.935	0.724	0.633	2.1e-70

ZFIN|ZDB-GENE-040718-176 ldhbb "lactate dehydrogenase Bb" [Danio rerio (taxid:7955)]

 Score = 579 (208.9 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
 Identities = 103/159 (64%), Positives = 134/159 (84%)

Query:    58 IIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 117
             IIP IVKYSP C L++VSNPVD+LTYV+WKLSG PK+RVIGSGTNLDS RFR L+A++LG
Sbjct:   175 IIPQIVKYSPNCILIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRYLMAERLG 234

Query:   118 LSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAY 177
             + P S  G+I+GEHGDSSVPVWSG NVAGV+L+++NP IG + D E + + H  VV+SAY
Sbjct:   235 IHPSSFNGWILGEHGDSSVPVWSGANVAGVSLQKLNPDIGKDTDRENWKETHKKVVDSAY 294

Query:   178 EIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             E+IRLKGYT+WAIGLS+A LT +++ N N++H +ST+++
Sbjct:   295 EVIRLKGYTNWAIGLSVADLTESIMKNLNRVHPVSTMVK 333

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|2996 Ldha "lactate dehydrogenase A" [Rattus norvegicus (taxid:10116)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 133/212 (62%), Positives = 176/212 (83%)

Query:     7 HSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
             H S   K   +++  +Y+++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VK
Sbjct:    67 HGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVK 126

Query:    65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
             YSPQC LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +
Sbjct:   127 YSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 186

Query:   125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
             G+++GEHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKG
Sbjct:   187 GWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKG 246

Query:   185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             YTSWAIGLS+A L  +++ N  ++H IST+I+
Sbjct:   247 YTSWAIGLSVADLAESIMKNLRRVHPISTMIK 278

GO:0001666 "response to hypoxia" evidence=IEP

GO:0004457 "lactate dehydrogenase activity" evidence=IDA

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0006089 "lactate metabolic process" evidence=IDA

GO:0006096 "glycolysis" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0019674 "NAD metabolic process" evidence=IDA

GO:0019900 "kinase binding" evidence=IPI

GO:0031668 "cellular response to extracellular stimulus" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0048569 "post-embryonic organ development" evidence=IEP

GO:0051287 "NAD binding" evidence=IDA

GO:0051591 "response to cAMP" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P00337 LDHB "L-lactate dehydrogenase B chain" [Gallus gallus (taxid:9031)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 132/197 (67%), Positives = 172/197 (87%)

Query:    20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
             +YA++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP CT+L+VSNPVD
Sbjct:    82 DYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCTILVVSNPVD 141

Query:    80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
             ILTYV+WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S +G+I+GEHGDSSV VW
Sbjct:   142 ILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSCHGWILGEHGDSSVAVW 201

Query:   140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
             SGVNVAGV+L+E+NPA+GT+ D+E + ++H  VV SAYE+IRLKGYT+WAIGLS+A L  
Sbjct:   202 SGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLKGYTNWAIGLSVAELCE 261

Query:   200 TLLNNTNKIHAISTLIQ 216
             T+L N  ++H++STL++
Sbjct:   262 TMLKNLYRVHSVSTLVK 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-991026-5 ldha "lactate dehydrogenase A4" [Danio rerio (taxid:7955)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 132/212 (62%), Positives = 174/212 (82%)

Query:     7 HSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
             H S   K   ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIPNI+K
Sbjct:    68 HGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIK 127

Query:    65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
             YSP C LL+VSNPVDILTYV+WKLSG P+NRVIGSGTNLDS RFR L+ +KLG+ P S +
Sbjct:   128 YSPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRYLMGEKLGIHPSSCH 187

Query:   125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
             G+++GEHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKG
Sbjct:   188 GWVVGEHGDSSVPVWSGVNVAGVSLQALNPDLGTDKDKEDWKSVHKMVVDSAYEVIKLKG 247

Query:   185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             YTSWAIG+S+A L  ++L N +K H +STL++
Sbjct:   248 YTSWAIGMSVADLCESILKNMHKCHPVSTLVK 279

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IDA

MGI|MGI:96759 Ldha "lactate dehydrogenase A" [Mus musculus (taxid:10090)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 132/212 (62%), Positives = 174/212 (82%)

Query:     7 HSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
             H S   K   +++  +Y ++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK
Sbjct:    67 HGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVK 126

Query:    65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
             YSP C LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+   S +
Sbjct:   127 YSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCH 186

Query:   125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
             G+++GEHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++ ++H  VV+SAYE+I+LKG
Sbjct:   187 GWVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKG 246

Query:   185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             YTSWAIGLS+A L  +++ N  ++H IST+I+
Sbjct:   247 YTSWAIGLSVADLAESIMKNLRRVHPISTMIK 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004457 "lactate dehydrogenase activity" evidence=ISO

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISO;IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006089 "lactate metabolic process" evidence=ISO

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019674 "NAD metabolic process" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0031668 "cellular response to extracellular stimulus" evidence=IDA

GO:0042802 "identical protein binding" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

ZFIN|ZDB-GENE-991026-6 ldhba "lactate dehydrogenase Ba" [Danio rerio (taxid:7955)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 133/212 (62%), Positives = 174/212 (82%)

Query:     7 HSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
             H S   K   ++   +Y+++  SRIV+VTAGVRQ+EGESRL+LV+RNVNIFK IIP IVK
Sbjct:    68 HGSLFLKTPKIVADKDYSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHIIPQIVK 127

Query:    65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
             YSP C L++VSNPVD+LTYV+WKLSG PK+RVIGSGTNLDS RFR ++A+KLG+   S  
Sbjct:   128 YSPDCILVVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRYIMAEKLGIHASSFN 187

Query:   125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
             G+I+GEHGD+SVPVWSG NVAGV+L+++NP IGT+ D E + + H  VV+SAYE+I+LKG
Sbjct:   188 GYILGEHGDTSVPVWSGANVAGVSLQKLNPDIGTDKDAENWKEAHKMVVDSAYEVIKLKG 247

Query:   185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             YT+WAIGLS+A LT TL+ N N++H +ST+++
Sbjct:   248 YTNWAIGLSVADLTETLVKNLNRVHPVSTMVK 279

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|P19858 LDHA "L-lactate dehydrogenase A chain" [Bos taurus (taxid:9913)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 130/202 (64%), Positives = 171/202 (84%)

Query:    15 VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIV 74
             +++  +Y ++  SR+VI+TAG RQ+EGESRL+LV+RNVNIFK IIPNIVKYSP C LL+V
Sbjct:    77 IVSGKDYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVV 136

Query:    75 SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
             SNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+I+GEHGDS
Sbjct:   137 SNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDS 196

Query:   135 SVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSI 194
             SVPVWSGVNVAGV+L+ ++P +GT+ D E++  +H  VV+SAYE+I+LKGYTSWAIGLS+
Sbjct:   197 SVPVWSGVNVAGVSLKNLHPELGTDADKEQWKAVHKQVVDSAYEVIKLKGYTSWAIGLSV 256

Query:   195 ASLTYTLLNNTNKIHAISTLIQ 216
             A L  +++ N  ++H IST+I+
Sbjct:   257 ADLAESIMKNLRRVHPISTMIK 278

GO:0031668 "cellular response to extracellular stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:96763 Ldhb "lactate dehydrogenase B" [Mus musculus (taxid:10090)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 129/197 (65%), Positives = 172/197 (87%)

Query:    20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
             +Y+++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP CT+++VSNPVD
Sbjct:    83 DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTIIVVSNPVD 142

Query:    80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
             ILTYV+WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VW
Sbjct:   143 ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVW 202

Query:   140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
             SGVNVAGV+L+E+NP +GT+ D+E + ++H  VV+SAYE+I+LKGYT+WAIGLS+A L  
Sbjct:   203 SGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKLKGYTNWAIGLSVADLIE 262

Query:   200 TLLNNTNKIHAISTLIQ 216
             ++L N ++IH +ST+++
Sbjct:   263 SMLKNLSRIHPVSTMVK 279

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004457 "lactate dehydrogenase activity" evidence=ISO

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006089 "lactate metabolic process" evidence=ISO

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019674 "NAD metabolic process" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

RGD|2997 Ldhb "lactate dehydrogenase B" [Rattus norvegicus (taxid:10116)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 129/197 (65%), Positives = 172/197 (87%)

Query:    20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
             +Y+++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP CT+++VSNPVD
Sbjct:    83 DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTIIVVSNPVD 142

Query:    80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
             ILTYV+WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VW
Sbjct:   143 ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVW 202

Query:   140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
             SGVNVAGV+L+E+NP +GT+ D+E + ++H  VV+SAYE+I+LKGYT+WAIGLS+A L  
Sbjct:   203 SGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKLKGYTNWAIGLSVADLIE 262

Query:   200 TLLNNTNKIHAISTLIQ 216
             ++L N ++IH +ST+++
Sbjct:   263 SMLKNLSRIHPVSTMVK 279

GO:0004457 "lactate dehydrogenase activity" evidence=IDA

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006089 "lactate metabolic process" evidence=IDA

GO:0006096 "glycolysis" evidence=IEA

GO:0019674 "NAD metabolic process" evidence=IDA

GO:0019900 "kinase binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E2RA64 LDHA "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 128/202 (63%), Positives = 172/202 (85%)

Query:    15 VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIV 74
             +++  +Y ++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPNIVKYSP C LL+V
Sbjct:    24 IVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVV 83

Query:    75 SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
             SNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDS
Sbjct:    84 SNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDS 143

Query:   135 SVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSI 194
             SVPVWSGVNVAGV+L+ ++P +GT+ D E++ ++H  VV+SAYE+I+LKGYTSWAIGLS+
Sbjct:   144 SVPVWSGVNVAGVSLKNLHPDLGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSV 203

Query:   195 ASLTYTLLNNTNKIHAISTLIQ 216
             A L  +++ N  ++H IST+I+
Sbjct:   204 ADLAESIMKNLRRVHPISTMIK 225

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9PVK5	LDHA_DANRE	1, ., 1, ., 1, ., 2, 7	0.6280	0.9583	0.6216	yes	N/A
P06151	LDHA_MOUSE	1, ., 1, ., 1, ., 2, 7	0.6280	0.9583	0.6234	yes	N/A
P19858	LDHA_BOVIN	1, ., 1, ., 1, ., 2, 7	0.6598	0.9120	0.5933	yes	N/A
P04642	LDHA_RAT	1, ., 1, ., 1, ., 2, 7	0.6328	0.9583	0.6234	yes	N/A
P00336	LDHB_PIG	1, ., 1, ., 1, ., 2, 7	0.6548	0.9120	0.5898	yes	N/A
P00337	LDHB_CHICK	1, ., 1, ., 1, ., 2, 7	0.6700	0.9120	0.5915	yes	N/A
P00339	LDHA_PIG	1, ., 1, ., 1, ., 2, 7	0.6548	0.9120	0.5933	yes	N/A
Q9XT87	LDHA_MONDO	1, ., 1, ., 1, ., 2, 7	0.6376	0.9583	0.6234	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
4th Layer	1.1.1.27	0.914
3rd Layer	1.1.1.37	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	1e-118
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	1e-94
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-94
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	2e-93
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-83
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	2e-82
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	3e-73
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	1e-70
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	2e-59
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	1e-55
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	1e-50
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	4e-44
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	3e-43
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	1e-36
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	2e-36
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-35
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	3e-34
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	1e-19
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	6e-13
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-10
cd00704	323	cd00704, MDH, Malate dehydrogenase	7e-10
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	5e-09
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	8e-09
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	4e-08
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	1e-07
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-07
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-07
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	4e-06
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	8e-05

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score =  338 bits (869), Expect = e-118
 Identities = 131/196 (66%), Positives = 169/196 (86%)

Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y+++  S++VIVTAG RQ EGESRL LV+RNV+IFKGIIP +VKYSP   LL+VSNPVDI
Sbjct: 66  YSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDI 125

Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +TYV+WKLSG PK+RVIGSG NLDS RFR L+A++LG++P SV+G+IIGEHGDSSVPVWS
Sbjct: 126 MTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEHGDSSVPVWS 185

Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
           GVNVAGV L+++NP IGT+ D E++ ++H  VV+SAYE+I+LKGYTSWAIGLS+A L   
Sbjct: 186 GVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDA 245

Query: 201 LLNNTNKIHAISTLIQ 216
           +L NT ++H++STL++
Sbjct: 246 ILRNTGRVHSVSTLVK 261

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score =  277 bits (712), Expect = 1e-94
 Identities = 96/197 (48%), Positives = 136/197 (69%), Gaps = 1/197 (0%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+  + + +V++TAG  Q+ GE+RL LV RNV I K I+P +VK       L+ +NPVD
Sbjct: 58  DYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD 117

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSGFPKNRVIGSGT LD+ R R LLA+KLG+ P+SV+ +IIGEHGDS VPVW
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVW 177

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   + GV L +   A GTE D  +  ++  +V ++AYEII  KG T + IG+++A +  
Sbjct: 178 SSATIGGVPLLDYLKAKGTETD-LDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVE 236

Query: 200 TLLNNTNKIHAISTLIQ 216
            +L++ N++  +S  + 
Sbjct: 237 AILHDENRVLPVSAYLD 253

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score =  277 bits (711), Expect = 3e-94
 Identities = 101/195 (51%), Positives = 137/195 (70%)

Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           YA  +G+ +V++TAG  Q+ GE+RL L++RNV IFK IIP I+KY+P   LL+V+NPVD+
Sbjct: 62  YADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDV 121

Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           LTYV++KLSG P NRVIGSGT LD+ RFR LL + LG+ P SV+ +IIGEHGDS V VWS
Sbjct: 122 LTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHGDSEVAVWS 181

Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
             N+ GV L E     G   D E   ++  +V N+AYEII  KG T +AIGL++A +   
Sbjct: 182 SANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIVEA 241

Query: 201 LLNNTNKIHAISTLI 215
           +L + N +  +S+L+
Sbjct: 242 ILRDENSVLTVSSLL 256

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score =  276 bits (708), Expect = 2e-93
 Identities = 112/204 (54%), Positives = 146/204 (71%)

Query: 13  VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLL 72
             +L   +YA++ GS + IVTAG RQ  GESRL+L++RNV +F+ IIP + KYSP   LL
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 73  IVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHG 132
           IVSNPVD+LTYV+WKLSGFP NRVIGSGTNLDS RFR L+A  L ++ + V  +I+GEHG
Sbjct: 152 IVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHG 211

Query: 133 DSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGL 192
           DSSV +WS V+V GV +           + E   ++H  VV+SAYE+I+LKGYTSWAIG 
Sbjct: 212 DSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSWAIGY 271

Query: 193 SIASLTYTLLNNTNKIHAISTLIQ 216
           S+ASL  +LL +  +IH +S L +
Sbjct: 272 SVASLVRSLLRDQRRIHPVSVLAK 295

Length = 350

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score =  249 bits (639), Expect = 2e-83
 Identities = 91/197 (46%), Positives = 132/197 (67%), Gaps = 1/197 (0%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+  + + +V++TAG  Q+ GE+RL LVE+N+ IFK I+  ++        L+ SNPVD
Sbjct: 67  DYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD 126

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTY +WKLSGFPK RVIGSGT+LDS RFR +L++KL + P SV+ +IIGEHGD+  PVW
Sbjct: 127 ILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVW 186

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S  NVAGV L E         + E+  ++  +V ++AYEII  KG T + I +++A +T 
Sbjct: 187 SHANVAGVPLEEYLEENEQYDE-EDLDEIFENVRDAAYEIIEKKGATYYGIAMALARITK 245

Query: 200 TLLNNTNKIHAISTLIQ 216
            +LNN N +  +S  ++
Sbjct: 246 AILNNENAVLPVSAYLE 262

Length = 315

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  246 bits (631), Expect = 2e-82
 Identities = 90/197 (45%), Positives = 129/197 (65%), Gaps = 5/197 (2%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  + IV++TAG  ++ GE+RL L+ RN  I + +I N+ KY P   +L+VSNPVD
Sbjct: 60  DYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD 119

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+ KLSG PKNRVIGSGT LDS RFR LLA+KL + P+SV+ +++GEHGDS V  W
Sbjct: 120 ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHGDSQVVAW 179

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   V G+ L E+ P         +   +  +V  S YEIIRLKG T++ I  +IA +  
Sbjct: 180 STATVGGLPLEELAP-----FTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVK 234

Query: 200 TLLNNTNKIHAISTLIQ 216
           ++L +  ++  +S + +
Sbjct: 235 SILLDERRVLPVSAVQE 251

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score =  223 bits (572), Expect = 3e-73
 Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 2/186 (1%)

Query: 29  IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL 88
           IV++TAG  Q+ GE+RL L+E+N  I K I+P I         L+ SNPVD++TYV  KL
Sbjct: 71  IVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKL 130

Query: 89  SGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVN 148
           SG PKNRVIG+GT+LD+ R R  LA+KL + P SV+ +++GEHGDS    WS V V G  
Sbjct: 131 SGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTVTVGGKP 190

Query: 149 LREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKI 208
           L ++    G   +  +  ++  DV  + YEII  KG T + I  ++A +   +LN+ N I
Sbjct: 191 LLDL-LKEGKLSE-LDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDENAI 248

Query: 209 HAISTL 214
             +S  
Sbjct: 249 LPVSAY 254

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  217 bits (555), Expect = 1e-70
 Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 8/215 (3%)

Query: 6   DHSSF---KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNI 62
            H++      V +    +Y   +G+ IV++TAGV ++ G +RL L+E+N  I K I   I
Sbjct: 46  SHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAI 105

Query: 63  VKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 122
            KY+P   +L+V+NPVDILTY++ K SGFPKNRVIGSGT LDS RFR  LA+KLG+SP+ 
Sbjct: 106 AKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKD 165

Query: 123 VYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL 182
           V+ ++IGEHGD+ VP+WS   V G  L E+     TE D EE  +    V N+  EII  
Sbjct: 166 VHAYVIGEHGDTMVPLWSQATVGGKPLEELLKED-TEEDLEELIE---RVRNAGAEIIEA 221

Query: 183 KGY-TSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           KG  T +    ++A +   +L +  ++  +S  + 
Sbjct: 222 KGAGTYYGPAAALARMVEAILRDEKRVLPVSVYLD 256

Length = 313

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  188 bits (480), Expect = 2e-59
 Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y    GS +V++TAGV ++ G SR  L+  N  I K +   I KY+P   +++V+NPVD
Sbjct: 64  DYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD 123

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TYV+ K SGFPKNRVIG    LDS RFR  +A++L +S + V  F++G HGDS VP+ 
Sbjct: 124 AMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGHGDSMVPLV 183

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
               V G+ L ++          E+  ++         EI+ L   G   +A   SIA +
Sbjct: 184 RYSTVGGIPLEDLLSK-------EKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASIAEM 236

Query: 198 TYTLLNNTNKIHAISTLIQ 216
              +L +  ++   S  ++
Sbjct: 237 VEAILKDKKRVLPCSAYLE 255

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  178 bits (454), Expect = 1e-55
 Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 9/199 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y    GS +V++TAG+ ++ G SR  L+  N  I K +  NI KY+P   +++V+NP+D
Sbjct: 60  DYEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD 119

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TYV++K SGFP+NRVIG    LDS RFR  +A++LG+S + V   ++G HGD+ VP+ 
Sbjct: 120 VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGHGDTMVPLP 179

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS--WAIGLSIASL 197
               V G+ L E+          EE  ++     N   EI+ L    S  +A   +IA +
Sbjct: 180 RYSTVGGIPLTELITK-------EEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEM 232

Query: 198 TYTLLNNTNKIHAISTLIQ 216
              +L +  ++   S  ++
Sbjct: 233 VEAILKDKKRVLPCSAYLE 251

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score =  166 bits (422), Expect = 1e-50
 Identities = 68/198 (34%), Positives = 116/198 (58%), Gaps = 6/198 (3%)

Query: 20  NYALSEGSRIVIVTAG--VRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77
           +Y     + I+++TAG  +     + RL L + N  I + I+ NI K + +  +++++NP
Sbjct: 62  DYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121

Query: 78  VDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVP 137
           +DI  Y++     +P N+VIG+GT LD+ R R ++A K G+ P++V G+++GEHG  + P
Sbjct: 122 LDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHGSHAFP 181

Query: 138 VWSGVNVAGVNLREVNPAIGTEG-DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIAS 196
           VWS VN+AG+ L E+    G E  D +E  +   +VV +AY++   KG+T+  I  S + 
Sbjct: 182 VWSLVNIAGLPLDELEALFGKEPIDKDELLE---EVVQAAYDVFNRKGWTNAGIAKSASR 238

Query: 197 LTYTLLNNTNKIHAISTL 214
           L   +L +   I  + TL
Sbjct: 239 LIKAILLDERSILPVCTL 256

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  147 bits (374), Expect = 4e-44
 Identities = 66/125 (52%), Positives = 89/125 (71%), Gaps = 1/125 (0%)

Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y   + + +VI+TAGV ++ G  RL L++RNV I K I  NI KYSP   +++VSNPVDI
Sbjct: 65  YEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDI 124

Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +TY+ W+ SG PK +VIG GT LD +RFR +LA+KLG+ P+ V  +I+GEHG S VP WS
Sbjct: 125 ITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVYILGEHGGSQVPDWS 183

Query: 141 GVNVA 145
            V +A
Sbjct: 184 TVRIA 188

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  146 bits (371), Expect = 3e-43
 Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 5/191 (2%)

Query: 26  GSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVS 85
           GS IVI+TAGV ++EG SRL L ++N  I K     I +++P   +L+V+NPVD++TY +
Sbjct: 72  GSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA 131

Query: 86  WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVA 145
            K SGF KNRV G GT+LDS+RF+V +A+   +    V+  IIGEHGDS VP+ S  ++ 
Sbjct: 132 LKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEHGDSMVPLISSTSIG 191

Query: 146 GVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNT 205
           G+ ++        E    +  K+   V N+   II LKG + +    +I++L  T+ N+ 
Sbjct: 192 GIPIKRF-----PEYKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAISNLVRTIANDE 246

Query: 206 NKIHAISTLIQ 216
            +I  +ST ++
Sbjct: 247 RRILTVSTYLE 257

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  130 bits (328), Expect = 1e-36
 Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 11/214 (5%)

Query: 11  KGVNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKY 65
               V+   NY    GS +VIVTAG+ +R G+S     R  L+  N  I   +   I KY
Sbjct: 59  SNSKVIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY 118

Query: 66  SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
            P   +++++NP+D++  +  + SG PKN+V G    LDS R R  +A+KLG++P  V+ 
Sbjct: 119 CPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHA 178

Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +IG HGD  VP+   V V G+ L E +   + T+ + +E  +  T   N+  EI+ L G
Sbjct: 179 SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVE-RT--RNTGKEIVDLLG 235

Query: 185 YTS--WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             S  +A   +   +    L +  ++   S  ++
Sbjct: 236 TGSAYFAPAAAAIEMAEAYLKDKKRVLPCSAYLE 269

Length = 321

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  129 bits (325), Expect = 2e-36
 Identities = 57/136 (41%), Positives = 88/136 (64%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S IV++TAG+ ++ G SR  L+  N  I + +   I+++SP   +++VSNP+D
Sbjct: 63  NYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD 122

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TYV+W+ SGFPK RVIG    LDS RFR  +A +LG+S + V   ++G HGD+ VP+ 
Sbjct: 123 AMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVPLV 182

Query: 140 SGVNVAGVNLREVNPA 155
               VAG+ + ++  A
Sbjct: 183 RYSTVAGIPVADLISA 198

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  122 bits (308), Expect = 1e-35
 Identities = 41/79 (51%), Positives = 57/79 (72%)

Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y   + + +V++TAGV ++ G +RL L+ RN  IFK I+P I K +P   +L+VSNPVDI
Sbjct: 64  YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNPVDI 123

Query: 81  LTYVSWKLSGFPKNRVIGS 99
           LTY++WK+SG P  RVIGS
Sbjct: 124 LTYIAWKVSGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  124 bits (312), Expect = 3e-34
 Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 13  VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLL 72
           +N+L   NY   + S +V++TAGV+++E  +R  L+  N  I K +  ++ KY P   ++
Sbjct: 60  INILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVI 119

Query: 73  IVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHG 132
            V+NP+D +  V  + SG P N++ G    LDS RFR  LA+KLG+SP  V   +IG HG
Sbjct: 120 CVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHG 179

Query: 133 DSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWA 189
           D  VP+     V G+ L + V     TE +  E  K  T   N   EI++L  KG   +A
Sbjct: 180 DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIK-KTR--NMGGEIVKLLKKGSAFFA 236

Query: 190 IGLSIASLTYTLLNNTNKIHAIST 213
              +I ++    L +  ++   S 
Sbjct: 237 PAAAIVAMIEAYLKDEKRVLVCSV 260

Length = 319

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score = 82.0 bits (203), Expect = 1e-19
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTE 159
           T LD+ R R  LA+K G+ P SV  ++IGEH  +  P WS   V  + L   V   +  +
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENL--K 58

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLK-GYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
               E  +L   V N+ YE+I  K G T++++  + A +   +L  T  + ++  
Sbjct: 59  DTDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGTGGVLSVGV 113

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 19  LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78
           L  AL +G+ +V++ AGV ++ G +R  L   N  I + +   + K  P+  +LI+SNPV
Sbjct: 62  LKKAL-KGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 79  D----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GD 133
           +    I   V  K   +   R+ G  T LD +R    +A+ LGL P  V   +IG H G 
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGV-TTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGV 179

Query: 134 SSVPVWSGVNVA 145
           + +P+ S     
Sbjct: 180 TILPLLSQCQPP 191

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 22  ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81
               G+ +V++ AGV ++ G +R  L   N  I + ++  +   +P+  + IVSNPV+  
Sbjct: 72  KALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNST 131

Query: 82  TYVSW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS-V 136
             ++     K   +   ++ G  T LD +R R  +A+ LG++P  V   ++G H   + V
Sbjct: 132 VPIAAETLKKAGVYDPRKLFGV-TTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTIV 190

Query: 137 PVWSG 141
           P+ S 
Sbjct: 191 PLLSQ 195

Length = 321

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V+TT+   +FK V+V               I+     ++ G  R  L+ +N  IFK    
Sbjct: 65  VITTDPEEAFKDVDV--------------AILVGAFPRKPGMERADLLRKNAKIFKEQGE 110

Query: 61  NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            + K   P   +L+V NP +    ++ K +     +   + T LD  R +  +A+KLG+ 
Sbjct: 111 ALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAY 177
              V   II G H ++ VP  S   V G    E V   +  E   +EF K    V     
Sbjct: 171 VSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVK---TVQKRGA 227

Query: 178 EIIRLKGYTS 187
            II+ +G +S
Sbjct: 228 AIIKKRGASS 237

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           +G+ +VI+ AGV ++ G +R  L   N  I K +   + K+ P   + I+SNPV+    I
Sbjct: 85  KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPI 144

Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH 131
              V  K   +   ++ G  T LD +R    +A+K GL P  V   ++G H
Sbjct: 145 AAEVLKKAGVYDPKKLFGV-TTLDVVRANTFVAEKKGLDPADVDVPVVGGH 194

Length = 323

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           +G+ +V++ AGV ++ G +R  L   N  I K ++  + +  P+  +L+++NPV+    I
Sbjct: 66  KGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPI 125

Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   +  N++ G  T LD +R    +A+  G  P  V   +IG H G++ +P+ 
Sbjct: 126 AAEVLKKKGVYDPNKLFGV-TTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLI 184

Query: 140 SGVN 143
           S   
Sbjct: 185 SQCP 188

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%)

Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           EG+ +V+++AGV ++ G  R  L   N  I K ++  + K  P+  + I++NPV+    I
Sbjct: 68  EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAI 127

Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   + KN++ G  T LD +R    +A+  G  P  V   +IG H G + +P+ 
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186

Query: 140 SGVNVAGVNLRE 151
           S   V GV+  E
Sbjct: 187 S--QVPGVSFTE 196

Length = 312

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 29/195 (14%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V TT+   +FK V      + AL  G+          ++ G  R  L+ +N  IFK    
Sbjct: 68  VATTDPEEAFKDV------DAALLVGAF--------PRKPGMERADLLSKNGKIFKEQGK 113

Query: 61  NIVKY-SPQCTLLIVSNPVD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 115
            + K       +L+V NP +    I +  +  +   PKN    + T LD  R +  LA K
Sbjct: 114 ALNKVAKKDVKVLVVGNPANTNALIASKNAPDIP--PKN--FSAMTRLDHNRAKYQLAAK 169

Query: 116 LGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVN 174
            G+    V   II G H ++ VP ++   V G  ++EV        D    G+    V  
Sbjct: 170 AGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKD-----DKWLEGEFIPTVQQ 224

Query: 175 SAYEIIRLKGYTSWA 189
               +I  +G +S A
Sbjct: 225 RGAAVIEARGASSAA 239

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 19/190 (10%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V T +   +F  V+V               I+     ++EG  R  L+ +NV IFK    
Sbjct: 64  VPTHDPAVAFTDVDV--------------AILVGAFPRKEGMERRDLLSKNVKIFKEQGR 109

Query: 61  NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            + K     C +L+V NP +    V    +     +   + T LD  R    +A++ G+ 
Sbjct: 110 ALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVP 169

Query: 120 PESVYGFII-GEHGDSSVP-VWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAY 177
              V   II G H  +  P V       G   + V  AI  +   +  G+  T V     
Sbjct: 170 VSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLD--GEFITTVQQRGA 227

Query: 178 EIIRLKGYTS 187
            IIR +  +S
Sbjct: 228 AIIRARKLSS 237

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 28/196 (14%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           ++TT    +FK ++                 + A V  + GE R  L+ +N  IFK    
Sbjct: 49  IVTTKLEEAFKDID--------------CAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94

Query: 61  NIVKYS-PQCTLLIVSNPVDILTYVSW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQK 115
            + +Y+ P   +L++ NPV+    V+     KLS   +N    S   LD  R    +A K
Sbjct: 95  ALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLS--AEN--FSSLCMLDHNRAVSRIASK 150

Query: 116 LGLSPESVYGFII-GEHGDSSVPVWSGVNVA-GVNLREVNPAIGTEGDTEEFGKLHTDVV 173
           L +  + +Y  ++ G H +S V   +          ++V   +  +            + 
Sbjct: 151 LKVPVDHIYHVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELCRD---YPEPDFFEVIA 207

Query: 174 NSAYEIIRLKGYTSWA 189
             A++I+ ++G+TS A
Sbjct: 208 QRAWKILEMRGFTSAA 223

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V TT+   +FK V+V              ++V A  R +EG  R  L++ NV IFK    
Sbjct: 67  VATTDPEEAFKDVDV-------------AILVGAMPR-KEGMERKDLLKANVKIFKEQGE 112

Query: 61  NIVKY-SPQCTLLIVSNPVDILTYVSWKL-SGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 118
            + KY      +L+V NP +    +  K     PK     + T LD  R +  +A KLG+
Sbjct: 113 ALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPK-ENFTALTRLDHNRAKSQIALKLGV 171

Query: 119 SPESVYGFII-GEHGDSSVPVWSGVNVAGVNL 149
               V   II G H  +  P    VN A V L
Sbjct: 172 PVSDVKNVIIWGNHSSTQYP---DVNHATVEL 200

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 26/144 (18%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V TT+   + KGVN              I ++  G  ++EG  R  ++ +NV+I+K    
Sbjct: 47  VATTDVVEACKGVN--------------IAVMVGGFPRKEGMERKDVMSKNVSIYKSQAS 92

Query: 61  NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFP-----KNRVIGSGTNLDSMRFRVLLAQ 114
            + K+ +P C +L+V+NP +    +   L  F      KN  I   T LD  R    +++
Sbjct: 93  ALEKHAAPDCKVLVVANPANTNALI---LKEFAPSIPEKN--ITCLTRLDHNRALGQISE 147

Query: 115 KLGLSPESVYGFII-GEHGDSSVP 137
           +LG+    V   II G H  +  P
Sbjct: 148 RLGVPVSDVKNVIIWGNHSSTQYP 171

Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
KOG1495|consensus	332		100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
PLN00135	309	malate dehydrogenase	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PLN00106	323	malate dehydrogenase	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1494|consensus	345		100.0
KOG1496|consensus	332		100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.97
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.94
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.91
PRK15076	431	alpha-galactosidase; Provisional	99.89
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.89
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.82
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.81
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.44
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.35
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.46
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	90.03
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.96
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	85.84

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=3.9e-65  Score=447.01  Aligned_cols=211  Identities=42%  Similarity=0.697  Sum_probs=196.7

Q ss_pred             ccccCCCCCCC-ceEEEc-CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKG-VNVLTR-LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~-~~v~~~-~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd   79 (216)
                      ++++|++++.. ...+.. ++|++|+|||+||||||.||||||+|+||+..|++|++++++++++++|+++++|+|||+|
T Consensus        43 ~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD  122 (313)
T COG0039          43 LDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD  122 (313)
T ss_pred             cchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH
Confidence            56677766643 333333 5699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCC
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE  159 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~  159 (216)
                      +|||++|+.+|+|++||||+||.|||+||+++||++++++|++|++||+|||||||||+||+++|+|+|+.++++.    
T Consensus       123 ~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~----  198 (313)
T COG0039         123 ILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE----  198 (313)
T ss_pred             HHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhCCChhHceeeEeccCCCceEEeeeeeeECCEEHHHHhhc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999863    


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        160 GDTEEFGKLHTDVVNSAYEIIRLKGY-TSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       160 ~~~~~~~~l~~~v~~~g~~ii~~Kg~-t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      .++++++++.++||++|++|++.||+ |+||+|.|+++|+++|++|+++++|+|++++
T Consensus       199 ~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~~~~ail~d~~~vl~~s~~l~  256 (313)
T COG0039         199 DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALARMVEAILRDEKRVLPVSVYLD  256 (313)
T ss_pred             ccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHHHHHHHHcCCCceEEEEEeec
Confidence            24567899999999999999999988 9999999999999999999999999999985

>KOG1495|consensus

Probab=100.00  E-value=8.5e-65  Score=430.62  Aligned_cols=214  Identities=62%  Similarity=1.060  Sum_probs=208.1

Q ss_pred             cccCC----CCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689          3 TTNDH----SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV   78 (216)
Q Consensus         3 ~~~d~----~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv   78 (216)
                      |++|+    +|+..++++.++||...+|+++||||||..++||++|++++++|+.|||.+.+++.+|+|+++++++||||
T Consensus        61 E~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV  140 (332)
T KOG1495|consen   61 EMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV  140 (332)
T ss_pred             hhhhhccccccccCCceEecCcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch
Confidence            45666    48899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689         79 DILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT  158 (216)
Q Consensus        79 d~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~  158 (216)
                      |+|||+.||.||||++||||+||.|||+|||++++++||++|+++++||+||||||.||.||.+.|+|.++.++.++.++
T Consensus       141 DilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t  220 (332)
T KOG1495|consen  141 DILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGT  220 (332)
T ss_pred             HHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeeccCCccceecccccccceEHhHhChhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +.+++.|+++.++|.+++|+||+.||+|+|++|.++++++++|++|+++++||||.++
T Consensus       221 ~~d~e~w~eihK~v~~sayeviklKGyTswaIglsva~l~~ail~n~~~i~~Vst~~k  278 (332)
T KOG1495|consen  221 DYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNLRRIHPVSTMVK  278 (332)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcCceeeeeeccc
Confidence            8999999999999999999999999999999999999999999999999999998764

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1e-62  Score=433.98  Aligned_cols=213  Identities=32%  Similarity=0.583  Sum_probs=195.0

Q ss_pred             ccccCC-CCCCC-ceEEEcCCccccCCccEEEEcCCCCCCCCcC--HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689          2 LTTNDH-SSFKG-VNVLTRLNYALSEGSRIVIVTAGVRQREGES--RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP   77 (216)
Q Consensus         2 ~~~~d~-~~~~~-~~v~~~~~~~~~~daDivvitag~~~k~g~~--r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP   77 (216)
                      ++++|+ +|... ...+.++||++++|||+||||||.||||||+  |+|++..|++|++++++++++++|++++|++|||
T Consensus        42 ~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP  121 (307)
T cd05290          42 LDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP  121 (307)
T ss_pred             HHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            345664 45432 3344578999999999999999999999999  7999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689         78 VDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIG  157 (216)
Q Consensus        78 vd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~  157 (216)
                      +|+|||++++.||||++||||+||.|||+||++++|+++|++|++|++||||||||||||+||+++|+|+|+.++++..+
T Consensus       122 vDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~  201 (307)
T cd05290         122 LDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFG  201 (307)
T ss_pred             HHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHHhCCCcccEEEEEEecCCCceEEeeeeeEECCEEHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875321


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                        .++++++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus       202 --~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~~ii~ail~d~~~v~~vsv~~~  258 (307)
T cd05290         202 --KEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSASRLIKAILLDERSILPVCTLLS  258 (307)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHHHHHHHHHhCCCeEEEEEEeeC
Confidence              134467899999999999999999999999999999999999999999999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.9e-61  Score=424.68  Aligned_cols=214  Identities=44%  Similarity=0.762  Sum_probs=197.0

Q ss_pred             ccccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          2 LTTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         2 ~~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      ++++|+.++. ....+.+++|++++||||||||||.||+|||+|+|++..|++|++++++++++++|++++|++|||+|+
T Consensus        39 ~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~  118 (299)
T TIGR01771        39 MDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDI  118 (299)
T ss_pred             HHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            4677777554 333555788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      ||+++++.+|||++||||+||.|||+|+++++|++++++|++|+++||||||+||||+||+++|+|+|+.+++++.+ ..
T Consensus       119 ~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~-~~  197 (299)
T TIGR01771       119 LTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKG-TE  197 (299)
T ss_pred             HHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcCeEEEEEEecCCCceeeceeeeEECCEEHHHHhhhcc-cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999865321 01


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++.+++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus       198 ~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ail~d~~~v~~~s~~~~  253 (299)
T TIGR01771       198 TDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLPVSAYLD  253 (299)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence            23457899999999999999999999999999999999999999999999999874

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=4.3e-61  Score=424.63  Aligned_cols=215  Identities=62%  Similarity=1.054  Sum_probs=200.6

Q ss_pred             ccccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          2 LTTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         2 ~~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      ++++|++ |+....+..++||++++||||||||+|.|++|||+|+|++.+|++|++++++.|++++|++++|++|||+|+
T Consensus        46 ~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~  125 (312)
T cd05293          46 MDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDI  125 (312)
T ss_pred             HHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHH
Confidence            4667776 554456777799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      |||++++.+|||++||||+||.||++|+++++|+++++++++|+++||||||+||||+||+++|+|+|+.++++..++..
T Consensus       126 ~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l~v~~~~v~~~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~  205 (312)
T cd05293         126 MTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDK  205 (312)
T ss_pred             HHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHhCCChhhEEEEEeecCCCCccccceeceECCEEHHHHhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975443334


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|+|++++
T Consensus       206 ~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ii~ail~d~~~~~~vsv~~~  261 (312)
T cd05293         206 DPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHSVSTLVK  261 (312)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHcCCCeEEEEEEEeC
Confidence            45668999999999999999999999999999999999999999999999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=2.5e-60  Score=424.98  Aligned_cols=215  Identities=53%  Similarity=0.877  Sum_probs=199.3

Q ss_pred             ccccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          2 LTTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         2 ~~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      ++++|++ |.....+..++||++++||||||||||.|++|||+|+|++.+|++|+++++++|++++|++++|++|||+|+
T Consensus        80 ~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv  159 (350)
T PLN02602         80 LDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDV  159 (350)
T ss_pred             HHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHH
Confidence            4677776 443445555579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      ||+++++.+|||++||||+||.||++|+++++|+++|+++++|+++|||||||+|||+||+++|+|+|+.++++.....+
T Consensus       160 ~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~  239 (350)
T PLN02602        160 LTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAY  239 (350)
T ss_pred             HHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecCCCceEeeeeeeeECCEEHHHHhhccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876432335


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus       240 ~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~~~v~~vsv~~~  295 (350)
T PLN02602        240 EKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAK  295 (350)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            56678999999999999999999999999999999999999999999999999863

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=6.1e-60  Score=416.28  Aligned_cols=210  Identities=20%  Similarity=0.254  Sum_probs=191.9

Q ss_pred             ccccCCCCCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd   79 (216)
                      ++++|++++..+.+..++| |++++||||||||||.|++|||+|+|++..|++|+++++++|+++ +|+++++++|||+|
T Consensus        33 ~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvD  112 (309)
T PLN00135         33 MELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPAN  112 (309)
T ss_pred             HHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHH
Confidence            5677887554345554566 999999999999999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCce-eEEEEccCCCCcccceeeeeE----CCeeccccCc
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV-YGFIIGEHGDSSVPVWSGVNV----AGVNLREVNP  154 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v-~~~v~G~HGds~vp~~S~~~v----~g~~l~~~~~  154 (216)
                      +|||++++.+|+|++|+||+||.|||+|||++||++++++|++| +++||||||++|||+||+++|    +|+|+.+++.
T Consensus       113 v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~  192 (309)
T PLN00135        113 TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVA  192 (309)
T ss_pred             HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCCceeeccccceEecCCCCcCHHHHhC
Confidence            99999999999999999999999999999999999999999999 689999999999999999999    9999999853


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHc--CCCceEEEEeeeC
Q psy17689        155 AIGTEGDTEEFGKLHTDVVNSAYEIIRL-KGYTSWAIGLSIASLTYTLLN--NTNKIHAISTLIQ  216 (216)
Q Consensus       155 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~-Kg~t~~~~a~a~~~ii~ail~--~~~~ilpvS~~l~  216 (216)
                      +     .+.++++|.++++++|++|+++ ||+|+||+|.++++++++|++  |+++++|||++++
T Consensus       193 ~-----~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vsv~~~  252 (309)
T PLN00135        193 D-----DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSD  252 (309)
T ss_pred             c-----hhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEEEEec
Confidence            1     1113688999999999999997 789999999999999999999  7799999999864

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=2.5e-58  Score=407.54  Aligned_cols=214  Identities=43%  Similarity=0.739  Sum_probs=198.2

Q ss_pred             ccccCCCCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          2 LTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      ++++|+........+.+++|++++|||+||||||.|++|||+|+|++..|++|++++++.+++++|+++++++|||+|+|
T Consensus        49 ~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~  128 (315)
T PRK00066         49 MDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDIL  128 (315)
T ss_pred             HHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHH
Confidence            46677763323334457899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCC
Q psy17689         82 TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD  161 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~  161 (216)
                      |+++++.+|||++||||+||.|||+|+++++|+++|++|++|+++||||||+||+|+||+++|+|+|+.+++.+. ..++
T Consensus       129 ~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~-~~~~  207 (315)
T PRK00066        129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEEN-EQYD  207 (315)
T ss_pred             HHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHHhCCCcccEEEEEEecCCCcceecceeceECCEEHHHHhhhc-cCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987542 2366


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       162 ~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++++.++++++|++|++.||+|+||+|.++++++++|++|++.++|+|++++
T Consensus       208 ~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~~~~i~~ail~~~~~v~~~sv~~~  262 (315)
T PRK00066        208 EEDLDEIFENVRDAAYEIIEKKGATYYGIAMALARITKAILNNENAVLPVSAYLE  262 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence            6788999999999999999999999999999999999999999999999999864

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2e-58  Score=416.20  Aligned_cols=210  Identities=20%  Similarity=0.193  Sum_probs=193.7

Q ss_pred             ccccCCCCCCCceE-EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v-~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd   79 (216)
                      ++++|++++....+ +.+++|++++|||+||||||.||+|||+|+|++..|++|++++++.|++++ |++++||+|||+|
T Consensus        95 ~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD  174 (387)
T TIGR01757        95 MELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN  174 (387)
T ss_pred             HHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence            57888885543344 357899999999999999999999999999999999999999999999986 9999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCcee-EEEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY-GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT  158 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~-~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~  158 (216)
                      +|||++++.+|+||+||||+||.|||+|||++||+++++++++|+ ++||||||+||||+||+++|+|+|+.+++++.  
T Consensus       175 v~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V~G~pl~~~~~~~--  252 (387)
T TIGR01757       175 TNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEVIKDT--  252 (387)
T ss_pred             HHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEECCEEhHHhcccc--
Confidence            999999999999999999999999999999999999999999995 88999999999999999999999999986421  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHH--cCCCceEEEEeeeC
Q psy17689        159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLL--NNTNKIHAISTLIQ  216 (216)
Q Consensus       159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~-~~a~a~~~ii~ail--~~~~~ilpvS~~l~  216 (216)
                         +..+++|.++++++|++|++.||+|+| ++|.++++++++|+  +|+++++|||++++
T Consensus       253 ---~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~  310 (387)
T TIGR01757       253 ---KWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTD  310 (387)
T ss_pred             ---cchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeC
Confidence               113678999999999999999999998 99999999999999  99999999999874

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=4.9e-58  Score=404.00  Aligned_cols=212  Identities=39%  Similarity=0.624  Sum_probs=195.1

Q ss_pred             cccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          3 TTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         3 ~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++|+.++. ....+.+++|+++++||+||+|+|.|++|||+|+|++.+|++|++++++++++++|++++|++|||+|+|
T Consensus        44 dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~  123 (306)
T cd05291          44 DLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVI  123 (306)
T ss_pred             hHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHH
Confidence            344554332 2333446789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCC
Q psy17689         82 TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD  161 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~  161 (216)
                      |+++++.+|||++||||+||.||++|+++++|+++++++++|+++||||||++|||+||+++|+|+|+.+++.+.  .+.
T Consensus       124 ~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~--~~~  201 (306)
T cd05291         124 TYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEG--KLS  201 (306)
T ss_pred             HHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHCCCcccceEEEEecCCCceeecceeeEEcCEEHHHHhhcc--ccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987542  244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       162 ~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++++.++++++|++|+++||+|+||+|.|+++++++|++|+++++|||++++
T Consensus       202 ~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~  256 (306)
T cd05291         202 ELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDENAILPVSAYLD  256 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHcCCCEEEEEEEEec
Confidence            6678999999999999999999999999999999999999999999999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=3.8e-58  Score=405.66  Aligned_cols=208  Identities=18%  Similarity=0.235  Sum_probs=187.6

Q ss_pred             ccccCCCCCCCceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd   79 (216)
                      ++++|++|+.....+.++|| ++++||||||||||.||+|||+|+|++..|++|+++++++|++++| ++++|++|||+|
T Consensus        35 ~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvD  114 (313)
T TIGR01756        35 MELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVN  114 (313)
T ss_pred             HHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchH
Confidence            56788885544334556787 5899999999999999999999999999999999999999999995 588999999999


Q ss_pred             HHHHHH-HHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeE--CCeeccccCcc
Q psy17689         80 ILTYVS-WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNV--AGVNLREVNPA  155 (216)
Q Consensus        80 ~~t~~~-~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v--~g~~l~~~~~~  155 (216)
                      +|||++ ++.+|||++ +||+||.|||+||+++||++++++|++|+++ ||||||++|||+||+++|  +|+|+..+. .
T Consensus       115 v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~-~  192 (313)
T TIGR01756       115 TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKNGKHQKVFD-E  192 (313)
T ss_pred             HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCCceeecccccEEecCCeehhHhh-h
Confidence            999999 699999999 9999999999999999999999999999876 999999999999999999  999976651 1


Q ss_pred             CCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHc--CCCceEEEEeee
Q psy17689        156 IGTEGDT-EEFGKLHTDVVNSAYEIIRLKGYTSWAIG-LSIASLTYTLLN--NTNKIHAISTLI  215 (216)
Q Consensus       156 ~~~~~~~-~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a-~a~~~ii~ail~--~~~~ilpvS~~l  215 (216)
                          +++ ..++++.++++++|++|+++||+|+||+| .++++++++|++  |+++++|||+++
T Consensus       193 ----~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvsv~l  252 (313)
T TIGR01756       193 ----LCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMGIPV  252 (313)
T ss_pred             ----cCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence                122 24689999999999999999999999988 599999999999  777999999987

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=4.4e-58  Score=406.93  Aligned_cols=209  Identities=21%  Similarity=0.235  Sum_probs=189.8

Q ss_pred             ccccCCCCCCCc-eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGV-NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~-~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd   79 (216)
                      ++++|++++... ..+.+++|++++|||+||||||.|+||||+|+|++..|++|+++++++|++++| +++++++|||+|
T Consensus        54 ~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD  133 (323)
T TIGR01759        54 MELEDCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN  133 (323)
T ss_pred             HHHhhccccccCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence            456677644322 234468899999999999999999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689         80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIG  157 (216)
Q Consensus        80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~  157 (216)
                      +|||++++.+ |||++||||+ |.|||+|||++||+++|++|++|++ +||||||++|||+||+++|+|+|+.+++.+  
T Consensus       134 v~t~v~~k~s~g~p~~rViG~-t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~--  210 (323)
T TIGR01759       134 TNALIASKNAPDIPPKNFSAM-TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKD--  210 (323)
T ss_pred             HHHHHHHHHcCCCCHHHEEEe-eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcc--
Confidence            9999999999 9999999998 9999999999999999999999976 599999999999999999999999998642  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689        158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNNT--NKIHAISTLIQ  216 (216)
Q Consensus       158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~-~a~a~~~ii~ail~~~--~~ilpvS~~l~  216 (216)
                         +..++++|.++++++|++|+++||+|+|+ +|.++++++++|++|+  ++++|||++++
T Consensus       211 ---~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~  269 (323)
T TIGR01759       211 ---DKWLEGEFIPTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSD  269 (323)
T ss_pred             ---hhhHHHHHHHHHHhhHHHHHhccCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeC
Confidence               11236899999999999999999999995 7799999999999998  99999999874

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=3.6e-58  Score=420.17  Aligned_cols=210  Identities=19%  Similarity=0.189  Sum_probs=194.2

Q ss_pred             ccccCCCCCCCceE-EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHh-hCCCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK-YSPQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v-~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~-~~p~~iiivvtNPvd   79 (216)
                      ++++|++++....+ +.+++|++++||||||||||.||+|||+|+|++..|++|+++++++|++ ++|++++||+|||+|
T Consensus       151 mDL~daa~~~~~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD  230 (444)
T PLN00112        151 MELEDSLYPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN  230 (444)
T ss_pred             HHHHHhhhhhcCceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH
Confidence            67889886543444 3678999999999999999999999999999999999999999999999 599999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT  158 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~  158 (216)
                      +|||++++.+|++++||||+||.|||+||+++||+++|+++++|++ +||||||+||||+||+++|+|+|+.+++++.  
T Consensus       231 v~t~v~~k~sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~--  308 (444)
T PLN00112        231 TNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDH--  308 (444)
T ss_pred             HHHHHHHHHcCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccc--
Confidence            9999999999999999999999999999999999999999999966 8999999999999999999999999986421  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHH--cCCCceEEEEeeeC
Q psy17689        159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLL--NNTNKIHAISTLIQ  216 (216)
Q Consensus       159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~-~~a~a~~~ii~ail--~~~~~ilpvS~~l~  216 (216)
                         +..+++|.++++++|++|+++||+|+| ++|.++++++++|+  +|+++++|||++++
T Consensus       309 ---~~~~~ei~~~v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~  366 (444)
T PLN00112        309 ---KWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTD  366 (444)
T ss_pred             ---cchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeC
Confidence               113688999999999999999999998 99999999999999  99999999999874

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=6.6e-58  Score=406.23  Aligned_cols=209  Identities=17%  Similarity=0.183  Sum_probs=190.7

Q ss_pred             ccccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd   79 (216)
                      ++++|++++. ....+.+++|++++||||||||||.|+||||+|+|++..|++|+++++++|++|+ |++++|++|||+|
T Consensus        55 ~Dl~~~~~~~~~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD  134 (326)
T PRK05442         55 MELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN  134 (326)
T ss_pred             hhhhhhhhhhcCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence            5677876442 2223457889999999999999999999999999999999999999999999987 8999999999999


Q ss_pred             HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689         80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIG  157 (216)
Q Consensus        80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~  157 (216)
                      +|||++++.+ |||++||||+ |.|||+||+++||++++++|++|+++ ||||||++|||+||+++|+|+|+.+++.+  
T Consensus       135 v~t~v~~k~s~g~p~~rViG~-t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~--  211 (326)
T PRK05442        135 TNALIAMKNAPDLPAENFTAM-TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVIND--  211 (326)
T ss_pred             HHHHHHHHHcCCCCHHHEEee-eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccc--
Confidence            9999999999 9999999999 99999999999999999999999997 59999999999999999999999998631  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHH-HHHHHHHHHcC--CCceEEEEeeeC
Q psy17689        158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLS-IASLTYTLLNN--TNKIHAISTLIQ  216 (216)
Q Consensus       158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a-~~~ii~ail~~--~~~ilpvS~~l~  216 (216)
                         .+.++++|.++++++|++|+++||+|+|++|.+ +++++++|++|  +++++|||++++
T Consensus       212 ---~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~  270 (326)
T PRK05442        212 ---QAWLEDTFIPTVQKRGAAIIEARGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSD  270 (326)
T ss_pred             ---hhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence               011367899999999999999999999999999 59999999999  899999999864

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=3.5e-57  Score=397.80  Aligned_cols=210  Identities=44%  Similarity=0.747  Sum_probs=196.3

Q ss_pred             ccccCCCCC-CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          2 LTTNDHSSF-KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         2 ~~~~d~~~~-~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      ++++|+... ...++..++||++++|||+||+|+|.|++|||+|++++.+|++|+++++++|++++|++++|++|||+|+
T Consensus        41 ~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~  120 (300)
T cd00300          41 LDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI  120 (300)
T ss_pred             HhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHH
Confidence            356666654 3345565678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      ||+++++.+|||++||||+||.|||+|+++++|+++++++++|+++|+||||++|||+||+++|+|+|+.+++++     
T Consensus       121 ~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~v~g~p~~~~~~~-----  195 (300)
T cd00300         121 LTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF-----  195 (300)
T ss_pred             HHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEEEeccCCceeeeeeeeEECCEEHHHhhcc-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998752     


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++++|.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus       196 ~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~  251 (300)
T cd00300         196 TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKSILLDERRVLPVSAVQE  251 (300)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence            34568999999999999999999999999999999999999999999999999864

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=6.7e-57  Score=397.33  Aligned_cols=203  Identities=50%  Similarity=0.820  Sum_probs=193.3

Q ss_pred             eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCC
Q psy17689         14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPK   93 (216)
Q Consensus        14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~   93 (216)
                      ..+.++||++++|||+||+|+|.|++||++|++++..|+++++++++.+++++|+|+++++|||+|+||+++++.+|||+
T Consensus        55 ~~i~~~d~~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~  134 (308)
T cd05292          55 VRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPP  134 (308)
T ss_pred             eEEeeCCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCH
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHH
Q psy17689         94 NRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVV  173 (216)
Q Consensus        94 ~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~  173 (216)
                      +||||+||.|||+|+++++|+++++++++|+++||||||++|||+||+++|+|+|+.++++..+.++++++++++.++++
T Consensus       135 ~~viG~gt~LDs~R~~~~la~~~~v~~~~v~~~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~  214 (308)
T cd05292         135 NRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVR  214 (308)
T ss_pred             HHeecccchhhHHHHHHHHHHHhCCCccceeceeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998765434466677899999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        174 NSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       174 ~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++|++|+++||+|+||+|.++++|+++|++|+++++|||++++
T Consensus       215 ~~g~~ii~~kg~t~~~~a~a~~~i~~ail~~~~~v~~~s~~~~  257 (308)
T cd05292         215 NAAYEIIERKGATYYAIGLALARIVEAILRDENSVLTVSSLLD  257 (308)
T ss_pred             HHHHHHHHcCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEEc
Confidence            9999999999999999999999999999999999999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.1e-56  Score=396.39  Aligned_cols=210  Identities=25%  Similarity=0.293  Sum_probs=190.4

Q ss_pred             ccccCCCCC--CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCch
Q psy17689          2 LTTNDHSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPV   78 (216)
Q Consensus         2 ~~~~d~~~~--~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPv   78 (216)
                      ++++|++++  ... .+.+++|++++|||+||+|||.|++|||+|+|++..|++|+++++++|++++ |++++|++|||+
T Consensus        51 ~Dl~d~~~~~~~~~-~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv  129 (323)
T cd00704          51 MELQDCAFPLLKGV-VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA  129 (323)
T ss_pred             eehhhhcccccCCc-EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence            567777533  333 3446789999999999999999999999999999999999999999999995 999999999999


Q ss_pred             hHHHHHHHHhcC-CCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccC
Q psy17689         79 DILTYVSWKLSG-FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAI  156 (216)
Q Consensus        79 d~~t~~~~~~sg-~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~  156 (216)
                      |+|||++++.+| ||++||||+ |.|||+|||++||++++++|++|++ +||||||++|+|+||+++|+|+|+.++.+. 
T Consensus       130 D~~t~~~~k~sg~~p~~~vig~-t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~-  207 (323)
T cd00704         130 NTNALIALKNAPNLPPKNFTAL-TRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD-  207 (323)
T ss_pred             HHHHHHHHHHcCCCCHHHEEEe-eHHHHHHHHHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc-
Confidence            999999999999 599999999 9999999999999999999999965 799999999999999999999999988653 


Q ss_pred             CCCCCHH-HHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHcCCC--ceEEEEeeeC
Q psy17689        157 GTEGDTE-EFGKLHTDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNNTN--KIHAISTLIQ  216 (216)
Q Consensus       157 ~~~~~~~-~~~~l~~~v~~~g~~ii~~Kg~t~~~-~a~a~~~ii~ail~~~~--~ilpvS~~l~  216 (216)
                        .++++ ..++|.++++++|++|+++||+|+|+ +|.++++++++|++|++  +++|||++++
T Consensus       208 --~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~  269 (323)
T cd00704         208 --LLDEEWLNDEFVKTVQKRGAAIIKKRGASSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSP  269 (323)
T ss_pred             --ccChHHHHHHHHHHHHhhHHHHHhccCcchhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeC
Confidence              12333 35789999999999999999999997 69999999999999999  9999999874

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3.6e-56  Score=392.29  Aligned_cols=197  Identities=33%  Similarity=0.572  Sum_probs=188.6

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++..++||++++|||+||||+|.|++||++|+|++..|++++++++++|++++|++++|++|||+|+||+++++.+|||
T Consensus        56 ~~i~~t~d~~~~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~  135 (305)
T TIGR01763        56 TKVTGTNNYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFP  135 (305)
T ss_pred             cEEEecCCHHHhCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcC
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||||+||.|||+||++++|++|++++++|+++|||||||||||+||+++|+|+|+.+++.       +++++++.+++
T Consensus       136 ~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v~GeHg~s~~~~wS~~~i~g~~~~~~~~-------~~~~~~l~~~v  208 (305)
T TIGR01763       136 KERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVPLVRYSTVAGIPVADLIS-------AERIAEIVERT  208 (305)
T ss_pred             HHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeEEecCCCcEEeeeeeeEECCEEHHHhcC-------HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999853       34588999999


Q ss_pred             HHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|++.  ||+|+||+|.++++|+++|++|+++++|||++++
T Consensus       209 ~~~g~~ii~~~~kg~t~~~~a~~~~~i~~ai~~~~~~v~~~s~~~~  254 (305)
T TIGR01763       209 RKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPCAAYLD  254 (305)
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEec
Confidence            9999999997  7799999999999999999999999999999874

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=6.4e-56  Score=393.42  Aligned_cols=210  Identities=20%  Similarity=0.216  Sum_probs=190.7

Q ss_pred             ccccCCCCCCCceEEEc-CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTR-LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~-~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd   79 (216)
                      ++++|++++....++.+ ++|++++|||+||+|||.|+++|++|++++..|++|+++++++|++++ |++++|++|||+|
T Consensus        50 ~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD  129 (324)
T TIGR01758        50 MELMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN  129 (324)
T ss_pred             eehhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence            56778875444445544 459999999999999999999999999999999999999999999995 9999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeEC-C---eeccccCc
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVA-G---VNLREVNP  154 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~-g---~~l~~~~~  154 (216)
                      +|||++++.+|++|++|||+||.|||+|||++||++++++|++|++ +||||||++|||+||+++|+ |   +|+.+++.
T Consensus       130 v~t~v~~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~  209 (324)
T TIGR01758       130 TNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIK  209 (324)
T ss_pred             HHHHHHHHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhc
Confidence            9999999999888888999999999999999999999999999975 89999999999999999999 9   99999864


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHH--cCCCceEEEEeeeC
Q psy17689        155 AIGTEGDTEEFGKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLL--NNTNKIHAISTLIQ  216 (216)
Q Consensus       155 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail--~~~~~ilpvS~~l~  216 (216)
                      +     +..+++++.++++++|++|++.|| +|+||+|.++++++++|+  .|+++++|||++++
T Consensus       210 ~-----~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~  269 (324)
T TIGR01758       210 D-----DAYLDGEFITTVQQRGAAIIRARKLSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSD  269 (324)
T ss_pred             c-----hhhHHHHHHHHHHhCHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecC
Confidence            2     112367899999999999999765 999999999999999999  89999999999874

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=3.7e-54  Score=381.81  Aligned_cols=202  Identities=32%  Similarity=0.499  Sum_probs=192.1

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCc-----CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHH
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWK   87 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~-----~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~   87 (216)
                      .++..++||++++|||+||+|+|.|++||+     +|++++..|++++++++++|++++|++++|++|||+|++++.+++
T Consensus        61 ~~I~~~~d~~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~  140 (321)
T PTZ00082         61 SKVIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQE  140 (321)
T ss_pred             eEEEECCCHHHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH
Confidence            466677999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHH
Q psy17689         88 LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGK  167 (216)
Q Consensus        88 ~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~  167 (216)
                      .+|+|++||||+||.||++|+++++|+++++++++|+++|+||||+||||+||+++|+|+|+.+++++.  .++++++++
T Consensus       141 ~sg~p~~rviGlgt~lds~R~~~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~--~~~~~~~~~  218 (321)
T PTZ00082        141 HSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYVTVGGIPLSEFIKKG--LITQEEIDE  218 (321)
T ss_pred             hcCCChhhEEEecCcccHHHHHHHHHHHhCCCcccceeeEEecCCCceEecceeeEECCEEHHHhhhcc--cCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999997641  255677899


Q ss_pred             HHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        168 LHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       168 l~~~v~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +.++++++|++|++.  ||+|+||+|.++++|+++|++|+++++|||++++
T Consensus       219 i~~~~~~~g~~i~~~~gkg~t~~~ia~a~~~i~~ail~d~~~v~~vs~~~~  269 (321)
T PTZ00082        219 IVERTRNTGKEIVDLLGTGSAYFAPAAAAIEMAEAYLKDKKRVLPCSAYLE  269 (321)
T ss_pred             HHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence            999999999999995  6899999999999999999999999999999874

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=2e-54  Score=383.59  Aligned_cols=209  Identities=18%  Similarity=0.194  Sum_probs=189.3

Q ss_pred             ccccCCCCCCC-ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKG-VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~-~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd   79 (216)
                      ++++|++++.. ...+.+++|++++|||+||||||.|++|||+|+|++..|++|+++++++|++++ |++++|++|||+|
T Consensus        53 ~Dl~~~~~~~~~~~~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD  132 (322)
T cd01338          53 MELEDCAFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN  132 (322)
T ss_pred             hhhhhccccccCceEEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence            56777764422 223447889999999999999999999999999999999999999999999999 5999999999999


Q ss_pred             HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689         80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIG  157 (216)
Q Consensus        80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~  157 (216)
                      +|||++++.+ |||++||||+ |.||++||++++|+++|+++++|+++ ||||||++++|+||+++++|+|+.+++.+  
T Consensus       133 ~~t~~~~k~sg~~p~~~ViG~-t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~--  209 (322)
T cd01338         133 TNALIAMKNAPDIPPDNFTAM-TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVIND--  209 (322)
T ss_pred             HHHHHHHHHcCCCChHheEEe-hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcCh--
Confidence            9999999999 5999999999 99999999999999999999999995 79999999999999999999999887531  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689        158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIG-LSIASLTYTLLNNT--NKIHAISTLIQ  216 (216)
Q Consensus       158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a-~a~~~ii~ail~~~--~~ilpvS~~l~  216 (216)
                         .+.++++|.++++++|++|+++||+|+|++| .++++++++|++|+  ++++|||++++
T Consensus       210 ---~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~  268 (322)
T cd01338         210 ---RAWLEDEFIPTVQKRGAAIIKARGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSD  268 (322)
T ss_pred             ---HhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence               0113679999999999999999999999999 59999999999999  59999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=4.4e-54  Score=379.59  Aligned_cols=199  Identities=37%  Similarity=0.598  Sum_probs=189.2

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++..++||++++|||+||+|+|.|++||++|.+++..|+++++++++.|++++|++++||++||+|++|+++++.+|||
T Consensus        59 ~~i~~~~d~~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~  138 (309)
T cd05294          59 AEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFD  138 (309)
T ss_pred             cEEEECCCHHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCC
Confidence            35556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||||+||.|||+|++++||+++++++++|+++|+|||||||||+||+++|+|+|+.++.+     .++++++++.+++
T Consensus       139 ~~~viG~gt~LDs~R~~~~la~~l~v~~~~v~~~viGeHg~s~~~~~S~~~i~g~~~~~~~~-----~~~~~~~~i~~~v  213 (309)
T cd05294         139 KNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETV  213 (309)
T ss_pred             HHHEeeccchHHHHHHHHHHHHHHCcChHHeEEEEEecCCCceEeeeeecEECCEEHHHhhc-----ccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999853     1245678999999


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|++.||+|+||+|.++++++++|++|++.++|||++++
T Consensus       214 ~~~g~~i~~~kg~t~~~~a~~~~~ii~ail~~~~~v~~vsv~~~  257 (309)
T cd05294         214 KNAGQNIISLKGGSEYGPASAISNLVRTIANDERRILTVSTYLE  257 (309)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHHCCCCeEEEEEEEEC
Confidence            99999999999999999999999999999999999999999864

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=2.6e-54  Score=380.67  Aligned_cols=196  Identities=24%  Similarity=0.351  Sum_probs=175.8

Q ss_pred             ccccCCCCCCCceEEEc-CC---ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689          2 LTTNDHSSFKGVNVLTR-LN---YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP   77 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~-~~---~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP   77 (216)
                      ++++|+..  ...+..+ ++   |++++|||+||||||.||+|||+|+||+..|++|+++++++|++++|++++|++|||
T Consensus        42 lDL~~~~~--~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          42 ADLSHINT--PAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             hHhHhCCC--cceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            45566652  2455543 44   899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHH----HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC-CCCcccceeeeeECCeecccc
Q psy17689         78 VDIL----TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREV  152 (216)
Q Consensus        78 vd~~----t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~  152 (216)
                      +|+|    +|++++.+|||++||||+|+ |||+||++++|+++|+++++|+++||||| ||||||+||++.+.    .+ 
T Consensus       120 vDv~~~i~t~~~~~~s~~p~~rviG~~~-LDs~R~~~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~----~~-  193 (310)
T cd01337         120 VNSTVPIAAEVLKKAGVYDPKRLFGVTT-LDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPP----FT-  193 (310)
T ss_pred             hhhHHHHHHHHHHHhcCCCHHHEEeeec-hHHHHHHHHHHHHhCcCHHHEEEEEEecCCCCceeccccccccc----cc-
Confidence            9998    99999999999999999965 99999999999999999999999999999 89999999999652    22 


Q ss_pred             CccCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHHcC---CCceEEEE
Q psy17689        153 NPAIGTEGDTEEFGKLHTDVVNSAYEIIRL---KGYTSWAIGLSIASLTYTLLNN---TNKIHAIS  212 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---Kg~t~~~~a~a~~~ii~ail~~---~~~ilpvS  212 (216)
                             ++++++++|.++++++|++|+++   ||+|+||+|.++++|+++|++|   ++.++|+|
T Consensus       194 -------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s  252 (310)
T cd01337         194 -------FDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECA  252 (310)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence                   23456889999999999999997   4999999999999999999955   77888888

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-53  Score=377.95  Aligned_cols=202  Identities=32%  Similarity=0.490  Sum_probs=191.9

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++..++||++++|||+||+++|.|++|||+|+|++..|+++++++++.|+++||++++|++|||+|++|+++++.+++|
T Consensus        60 ~~i~~~~d~~~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p  139 (319)
T PTZ00117         60 INILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIP  139 (319)
T ss_pred             eEEEeCCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCC
Confidence            45566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||+|+||.||++|+++++|++++++|++|+++|+||||++|||+||+++|+|+|+.+++++  ..+++++++++.+++
T Consensus       140 ~~rviG~gt~lds~R~~~~la~~l~v~~~~v~~~viGeHg~~~v~~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v  217 (319)
T PTZ00117        140 SNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHGDLMVPLPRYCTVNGIPLSDFVKK--GAITEKEINEIIKKT  217 (319)
T ss_pred             cccEEEecchHHHHHHHHHHHHHhCCCcccceEEEeecCCCcEEeceeeceECCEEHHHHhhc--cccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998754  225667789999999


Q ss_pred             HHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|+++  ||+|+||+|.++++++++|++|+++++|||++++
T Consensus       218 ~~~g~~ii~~~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~  263 (319)
T PTZ00117        218 RNMGGEIVKLLKKGSAFFAPAAAIVAMIEAYLKDEKRVLVCSVYLN  263 (319)
T ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEEEEec
Confidence            9999999997  8999999999999999999999999999999864

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=8e-54  Score=378.00  Aligned_cols=198  Identities=21%  Similarity=0.334  Sum_probs=176.7

Q ss_pred             ccccCCCCCCCceEEE-cC-C--ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689          2 LTTNDHSSFKGVNVLT-RL-N--YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP   77 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~-~~-~--~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP   77 (216)
                      ++++|..  ....+.. ++ +  |++++|||+||+|||.|++|||+|+|++..|++|+++++++|++++|++++|++|||
T Consensus        41 ~DL~~~~--~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        41 ADLSHIP--TAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             chhhcCC--cCceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            3445544  2345554 33 3  899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhH----HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCC-CcccceeeeeECCeecccc
Q psy17689         78 VDI----LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD-SSVPVWSGVNVAGVNLREV  152 (216)
Q Consensus        78 vd~----~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGd-s~vp~~S~~~v~g~~l~~~  152 (216)
                      +|+    ||+++++.+|||++||||+|+ |||+||+++||++++++|++|+++||||||+ ||||+||++++  .++   
T Consensus       119 vDv~~~i~t~~~~~~sg~p~~rViG~g~-LDsaR~r~~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~--~~~---  192 (312)
T TIGR01772       119 VNSTVPIAAEVLKKKGVYDPNKLFGVTT-LDIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPG--KVL---  192 (312)
T ss_pred             hhhHHHHHHHHHHHhcCCChHHEEeeec-chHHHHHHHHHHHhCCCHHHeEEEEEEecCCCccccccccccc--cCC---
Confidence            998    999999999999999999976 9999999999999999999999999999986 99999999984  221   


Q ss_pred             CccCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHH---cCCCceEEEEeee
Q psy17689        153 NPAIGTEGDTEEFGKLHTDVVNSAYEIIRL---KGYTSWAIGLSIASLTYTLL---NNTNKIHAISTLI  215 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---Kg~t~~~~a~a~~~ii~ail---~~~~~ilpvS~~l  215 (216)
                             ++++++++|.++|+++|++|+++   ||+|+||+|.|+++|+++|+   +|+++++|+| ++
T Consensus       193 -------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~  253 (312)
T TIGR01772       193 -------FTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECA-YV  253 (312)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEE-EE
Confidence                   23456889999999999999997   68999999999999999999   5899999966 65

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=4.9e-53  Score=386.53  Aligned_cols=207  Identities=15%  Similarity=0.143  Sum_probs=187.3

Q ss_pred             CccccCCCCCCCc-eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC--CeEEEEEcCc
Q psy17689          1 VLTTNDHSSFKGV-NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP--QCTLLIVSNP   77 (216)
Q Consensus         1 ~~~~~d~~~~~~~-~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p--~~iiivvtNP   77 (216)
                      ++|++|++|+... ..+.+++|++++|||+||+|+|.||+|||+|+|++..|++|+++++++|++++|  ++++|++|||
T Consensus       173 amDL~D~a~pll~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNP  252 (452)
T cd05295         173 VMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTF  252 (452)
T ss_pred             HHHHHHhHHhhcCCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCc
Confidence            3688999977543 345578899999999999999999999999999999999999999999999999  9999999999


Q ss_pred             hhHHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECC---------
Q psy17689         78 VDILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAG---------  146 (216)
Q Consensus        78 vd~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g---------  146 (216)
                      +|+||+++++.+ |||++||||+|| |||+||+++||+++|+++++|+. +||||||+||||+||+++|+|         
T Consensus       253 vD~~t~i~~k~apgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~  331 (452)
T cd05295         253 LNLKTSILIKYAPSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPP  331 (452)
T ss_pred             HHHHHHHHHHHcCCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEccccccccccc
Confidence            999999999999 999999999988 77999999999999999999965 899999999999999999987         


Q ss_pred             ---eeccccCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689        147 ---VNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNT--NKIHAISTLIQ  216 (216)
Q Consensus       147 ---~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~--~~ilpvS~~l~  216 (216)
                         +|+.+++.+     .+-..+++.+.++++++   ++||+|+||+|.|+++++++|++|+  ++++|||++++
T Consensus       332 ~~~~pl~e~i~d-----~~w~~~~~~~~v~~rg~---~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sd  398 (452)
T cd05295         332 NYSRPVLELVHD-----SKWINGEFVATLKSLSS---SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISE  398 (452)
T ss_pred             ccCccHHHHhcc-----hhhhHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeec
Confidence               999888531     01123678999999999   7899999999999999999999997  69999999874

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=2.1e-52  Score=371.13  Aligned_cols=209  Identities=21%  Similarity=0.251  Sum_probs=186.1

Q ss_pred             ccccCCCCCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd   79 (216)
                      ++++|++++....+...++ |++++|||+||+|||.|+++|++|.+++..|++|++++++.|++++ |++++|++|||+|
T Consensus        53 ~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD  132 (325)
T cd01336          53 MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN  132 (325)
T ss_pred             eehhhccccccCCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence            4566665333334444566 5889999999999999999999999999999999999999999996 8999999999999


Q ss_pred             HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeEC----CeeccccC
Q psy17689         80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVA----GVNLREVN  153 (216)
Q Consensus        80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~----g~~l~~~~  153 (216)
                      +|||++++.+ ++|+++ ||+||.||++||++++|++++++|++|+++ ||||||+||||+||+++|+    |+|+.+++
T Consensus       133 ~~t~~~~k~~~~~~~~~-ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~  211 (325)
T cd01336         133 TNALILLKYAPSIPKEN-FTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAV  211 (325)
T ss_pred             HHHHHHHHHcCCCCHHH-EEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHh
Confidence            9999999995 787777 999999999999999999999999999876 9999999999999999999    99999986


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHcC--CCceEEEEeeeC
Q psy17689        154 PAIGTEGDTEEFGKLHTDVVNSAYEIIRL-KGYTSWAIGLSIASLTYTLLNN--TNKIHAISTLIQ  216 (216)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~v~~~g~~ii~~-Kg~t~~~~a~a~~~ii~ail~~--~~~ilpvS~~l~  216 (216)
                      ++.     ...+++|.++++++|++|+++ ||+|+||+|.++++++++|++|  +++++|||++++
T Consensus       212 ~~~-----~~~~~~i~~~v~~~g~~Ii~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~  272 (325)
T cd01336         212 KDD-----AWLNGEFISTVQKRGAAVIKARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSD  272 (325)
T ss_pred             ccc-----chhHHHHHHHHHhhHHHHHHccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecC
Confidence            421     113688999999999999996 6799999999999999999998  499999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.6e-51  Score=361.54  Aligned_cols=197  Identities=36%  Similarity=0.610  Sum_probs=188.0

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++..++||++++|||+||+++|.|++||++|++++..|++++++++++|.+++|++++|++|||+|++|+++++.+|+|
T Consensus        53 ~~I~~t~d~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~  132 (300)
T cd01339          53 TKVTGTNDYEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFP  132 (300)
T ss_pred             eEEEEcCCHHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCC
Confidence            45666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      |+||||+||.||++|+++++|++|++++++|+++|+||||++++|+||+++|+|+|+.+++.       +++++++.+++
T Consensus       133 ~~rviGlgt~lds~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-------~~~~~~~~~~v  205 (300)
T cd01339         133 RNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERT  205 (300)
T ss_pred             HHHEEEecchHHHHHHHHHHHHHhCCCccceEEEEEeCCCCcceecceecEECCEEHHHhcC-------hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998853       34589999999


Q ss_pred             HHHHHHHHHhh--CCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRLK--GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~K--g~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|++.|  |+|+||+|.++++|+++|++|++.++|||++++
T Consensus       206 ~~~~~~ii~~k~~g~t~~~~a~~~~~i~~ail~~~~~i~~~s~~~~  251 (300)
T cd01339         206 RNGGAEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPCSAYLE  251 (300)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence            99999999976  999999999999999999999999999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-50  Score=358.53  Aligned_cols=187  Identities=24%  Similarity=0.412  Sum_probs=172.6

Q ss_pred             ceEEEcCC----ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHH--
Q psy17689         13 VNVLTRLN----YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW--   86 (216)
Q Consensus        13 ~~v~~~~~----~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~--   86 (216)
                      ..+..++|    |++++|||+||+|+|.|++||++|++++..|+++++++++++++++|+++++++|||+|+|+++++  
T Consensus        59 ~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~  138 (321)
T PTZ00325         59 AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAET  138 (321)
T ss_pred             ceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhh
Confidence            34544444    889999999999999999999999999999999999999999999999999999999999999995  


Q ss_pred             --HhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCC-CcccceeeeeECCeeccccCccCCCCCCHH
Q psy17689         87 --KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD-SSVPVWSGVNVAGVNLREVNPAIGTEGDTE  163 (216)
Q Consensus        87 --~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGd-s~vp~~S~~~v~g~~l~~~~~~~~~~~~~~  163 (216)
                        +.+|+||+||||+|+ |||+||+++||+++|++|++|++|||||||| ||||+||++   |+|+           +++
T Consensus       139 ~~~~sg~p~~~viG~g~-LDs~R~r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~---g~~l-----------~~~  203 (321)
T PTZ00325        139 LKKAGVYDPRKLFGVTT-LDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQT---GLSL-----------PEE  203 (321)
T ss_pred             hhhccCCChhheeechh-HHHHHHHHHHHHHhCcChhheEEEEEeecCCcccccchhcc---CCCC-----------CHH
Confidence              899999999999985 9999999999999999999999999999999 899999998   7664           235


Q ss_pred             HHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHcC---CCceEEEEeee
Q psy17689        164 EFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNN---TNKIHAISTLI  215 (216)
Q Consensus       164 ~~~~l~~~v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~~---~~~ilpvS~~l  215 (216)
                      +++++.++++++||+|++.|   |+|+||||.++++|+++|++|   +++++||| ++
T Consensus       204 ~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~  260 (321)
T PTZ00325        204 QVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FV  260 (321)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EE
Confidence            68899999999999999976   799999999999999999965   99999996 54

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=3.1e-50  Score=353.78  Aligned_cols=197  Identities=36%  Similarity=0.592  Sum_probs=187.7

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++..++||++++|||+||+++|.|++||++|++++.+|+++++++++.+++++|++++|++|||+|+||+++++.+|+|
T Consensus        57 ~~i~~~~d~~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~  136 (307)
T PRK06223         57 TKITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFP  136 (307)
T ss_pred             cEEEeCCCHHHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCC
Confidence            45556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||||+||.|||+||+++||++++++|++|+++|+||||++++|+||+++|+|.|+.+++       +++.+++|.+++
T Consensus       137 ~~~viG~gt~lds~r~~~~la~~l~v~~~~v~~~viGehg~s~~p~~S~~~v~g~~~~~~~-------~~~~~~~l~~~v  209 (307)
T PRK06223        137 KNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLEDLL-------SKEKLDEIVERT  209 (307)
T ss_pred             cccEEEeCCCcHHHHHHHHHHHHhCcChhhCcccEEcCCCCcceEchhhCEECCEEHHHhC-------ChHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999873       234578999999


Q ss_pred             HHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|++.  ||++.|++|.++++++++|++|++.++|||++++
T Consensus       210 ~~~~~~ii~~~~kg~t~~~~A~~~~~ii~ail~~~~~~~~~~v~~~  255 (307)
T PRK06223        210 RKGGAEIVGLLKTGSAYYAPAASIAEMVEAILKDKKRVLPCSAYLE  255 (307)
T ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence            9999999997  8999999999999999999999999999999864

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-50  Score=355.48  Aligned_cols=183  Identities=26%  Similarity=0.449  Sum_probs=171.3

Q ss_pred             cCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHH----HhcCCC
Q psy17689         18 RLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW----KLSGFP   92 (216)
Q Consensus        18 ~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~----~~sg~~   92 (216)
                      .+| |++++|+|+||+|+|.|++||++|++++..|++++++++++|++++|+++++++|||+|+||++++    +.+|||
T Consensus        60 ~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p  139 (312)
T PRK05086         60 GEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYD  139 (312)
T ss_pred             CCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCC
Confidence            346 688999999999999999999999999999999999999999999999999999999999999988    999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCC-CcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD-SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGd-s~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      ++||||+|+ |||+|+++++|+++|++|++|+++||||||+ ||||+||++  +|+|+.           +++++++.++
T Consensus       140 ~~rvig~~~-Lds~R~~~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~--~g~~l~-----------~~~~~~i~~~  205 (312)
T PRK05086        140 KNKLFGVTT-LDVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSFT-----------EQEVADLTKR  205 (312)
T ss_pred             HHHEEeeec-HHHHHHHHHHHHHhCCChhheEEEEEEecCCCceecccccc--CCccCC-----------HHHHHHHHHH
Confidence            999999975 9999999999999999999999999999976 999999999  887762           3458899999


Q ss_pred             HHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHc---CCCceEEEEeee
Q psy17689        172 VVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLN---NTNKIHAISTLI  215 (216)
Q Consensus       172 v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~---~~~~ilpvS~~l  215 (216)
                      ++++|++|+++|   |+|+||+|.++++++++|++   |+++++|+| ++
T Consensus       206 v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~  254 (312)
T PRK05086        206 IQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA-YV  254 (312)
T ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EE
Confidence            999999999988   89999999999999999995   489999976 54

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.4e-49  Score=352.29  Aligned_cols=198  Identities=24%  Similarity=0.319  Sum_probs=176.3

Q ss_pred             ccccCCCCCCCceEEE-cCC---ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689          2 LTTNDHSSFKGVNVLT-RLN---YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP   77 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~-~~~---~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP   77 (216)
                      ++++|+...  ..+.. +++   |++++|||+||+|||.|++||++|+|++..|++|++++++++++++|+++++++|||
T Consensus        60 ~Dl~~~~~~--~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP  137 (323)
T PLN00106         60 ADVSHINTP--AQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP  137 (323)
T ss_pred             chhhhCCcC--ceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            345555553  23332 345   778999999999999999999999999999999999999999999999999999999


Q ss_pred             hh----HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCC-CCcccceeeeeECCeecccc
Q psy17689         78 VD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHG-DSSVPVWSGVNVAGVNLREV  152 (216)
Q Consensus        78 vd----~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HG-ds~vp~~S~~~v~g~~l~~~  152 (216)
                      +|    +|+|++++.+||||+||||+|+ ||++||++++|+++|+++.+|+++|+|||| +||||+||++++.    .+ 
T Consensus       138 vD~~~~i~t~~~~~~s~~p~~~viG~~~-LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~----~~-  211 (323)
T PLN00106        138 VNSTVPIAAEVLKKAGVYDPKKLFGVTT-LDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPK----VS-  211 (323)
T ss_pred             ccccHHHHHHHHHHcCCCCcceEEEEec-chHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceec----cc-
Confidence            99    9999999999999999999975 999999999999999999999999999995 5999999999642    22 


Q ss_pred             CccCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHHcC---CCceEEEEee
Q psy17689        153 NPAIGTEGDTEEFGKLHTDVVNSAYEIIRL---KGYTSWAIGLSIASLTYTLLNN---TNKIHAISTL  214 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---Kg~t~~~~a~a~~~ii~ail~~---~~~ilpvS~~  214 (216)
                             ++++++++|.++++++|++|++.   ||+|+||+|.++++|+++|++|   +++++|||.+
T Consensus       212 -------~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s~~  272 (323)
T PLN00106        212 -------FTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYV  272 (323)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEEEE
Confidence                   33566899999999999999997   6899999999999999999995   7799999943

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.4e-42  Score=299.58  Aligned_cols=167  Identities=46%  Similarity=0.742  Sum_probs=154.8

Q ss_pred             cccCCCCCC-CceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          3 TTNDHSSFK-GVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         3 ~~~d~~~~~-~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      +++|+.... ..++..++| |++++|||+||+|+|.|++||++|.+++.+|++++++++++++++||++++|++|||+|+
T Consensus        45 dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~  124 (263)
T cd00650          45 DLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDI  124 (263)
T ss_pred             HHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence            344554443 456677777 788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      +|+++++.+|+|++||||+|| ||++|+++++|+++++++++|+++|||+||++|+|+||+++                 
T Consensus       125 ~t~~~~~~sg~~~~kviG~~~-ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~~-----------------  186 (263)
T cd00650         125 ITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVYILGEHGGSQVPDWSTVR-----------------  186 (263)
T ss_pred             HHHHHHHHhCCCchhEEEeec-chHHHHHHHHHHHhCCCccceEEEEEEcCCCceEeccccch-----------------
Confidence            999999999999999999999 99999999999999999999999999999999999999753                 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                                                   +|.++++++++|++|++.++|+|++++
T Consensus       187 -----------------------------~a~~~~~ii~ai~~~~~~~~~v~v~~~  213 (263)
T cd00650         187 -----------------------------IATSIADLIRSLLNDEGEILPVGVRNN  213 (263)
T ss_pred             -----------------------------HHHHHHHHHHHHHcCCCEEEEEEEEeC
Confidence                                         999999999999999999999999863

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1494|consensus

Probab=100.00  E-value=5.8e-38  Score=268.05  Aligned_cols=196  Identities=26%  Similarity=0.379  Sum_probs=170.9

Q ss_pred             cCCCCCCCceE-EEcC---Ccc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689          5 NDHSSFKGVNV-LTRL---NYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD   79 (216)
Q Consensus         5 ~d~~~~~~~~v-~~~~---~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd   79 (216)
                      .|+++.+++.. .+..   +.+ .+++||+|||.||+||||||+|+||+..|+.|+++++..+.++||++++.++||||+
T Consensus        70 aDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVN  149 (345)
T KOG1494|consen   70 ADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVN  149 (345)
T ss_pred             ccccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCccc
Confidence            46666654444 3332   223 399999999999999999999999999999999999999999999999999999999


Q ss_pred             ----HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCC-CceeEEEEccC-CCCcccceeeeeECCeeccccC
Q psy17689         80 ----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREVN  153 (216)
Q Consensus        80 ----~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~-~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~~  153 (216)
                          +.++++++..-|+|+|+||. |.||..|+++++++.++++| ++++.+|+|+| |.|.+|++|++.    |..   
T Consensus       150 stVPIaaevlKk~G~ydpkklfGV-TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~----p~~---  221 (345)
T KOG1494|consen  150 STVPIAAEVLKKAGVYDPKKLFGV-TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCK----PPF---  221 (345)
T ss_pred             ccchHHHHHHHHcCCCCccceece-ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCC----Ccc---
Confidence                56788888889999999999 99999999999999999999 55999999999 899999999976    211   


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHcC---CCceEEEEe
Q psy17689        154 PAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNN---TNKIHAIST  213 (216)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~~---~~~ilpvS~  213 (216)
                           .+++++++.|+.++|.+|.||+++|   |+.++++|+|.+++..++++.   +..+.-||.
T Consensus       222 -----~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecaf  282 (345)
T KOG1494|consen  222 -----RFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAF  282 (345)
T ss_pred             -----cCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeE
Confidence                 2568899999999999999999987   789999999999999999874   456777764

>KOG1496|consensus

Probab=100.00  E-value=1.8e-37  Score=260.47  Aligned_cols=204  Identities=21%  Similarity=0.281  Sum_probs=182.4

Q ss_pred             ccccCCCCCCCceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd   79 (216)
                      .|+|||+|+....++.++|..+ |+|.|+.|+..+.||++||+|.|++..|++|+++.+.++.+| +|+.+++|++||++
T Consensus        55 mELqD~a~PlL~~Vvattd~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaN  134 (332)
T KOG1496|consen   55 MELQDCALPLLKGVVATTDEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPAN  134 (332)
T ss_pred             HHHHhhhhhHHHhhhcccChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccc
Confidence            5899999999999999888775 999999999999999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECC----eeccccC
Q psy17689         80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAG----VNLREVN  153 (216)
Q Consensus        80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g----~~l~~~~  153 (216)
                      +++.++.++. .+|.+++-.+ |.||++|+..+||.++|++.++|+++ |||||+.||+|+.-+++|++    +|+.+.+
T Consensus       135 TNali~~k~ApsIP~kNfs~l-TRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v  213 (332)
T KOG1496|consen  135 TNALILKKFAPSIPEKNFSAL-TRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAV  213 (332)
T ss_pred             cchhHHhhhCCCCchhcchhh-hhhchhhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHh
Confidence            9999998854 7998886544 99999999999999999999999997 99999999999999999975    7777775


Q ss_pred             ccCCCCCCHHHH--HHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcCCC--ceEEEEe
Q psy17689        154 PAIGTEGDTEEF--GKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLLNNTN--KIHAIST  213 (216)
Q Consensus       154 ~~~~~~~~~~~~--~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail~~~~--~ilpvS~  213 (216)
                      .       ++.|  .++++.||++|..+|+.++ ++.++.|.|+|+.++.++....  ......+
T Consensus       214 ~-------d~~wL~g~Fi~tVQkRGaavi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV  271 (332)
T KOG1496|consen  214 K-------DDAWLQGEFIETVQKRGAAVIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGV  271 (332)
T ss_pred             c-------cchhhccchhhHHHhcchHhhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEee
Confidence            4       4555  6899999999999999987 4557999999999999998643  4444433

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.97  E-value=1.8e-31  Score=217.43  Aligned_cols=115  Identities=41%  Similarity=0.651  Sum_probs=107.8

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII  180 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii  180 (216)
                      |.|||+||+++||+++|++|++++++||||||++|||+||+++++|+|+.++.+.. ..++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~-~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPS-GKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGEEETTEEHHHHHHTT-TSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCcceeeeeecccccccccccccccc-cchhHHhhhccccccEeccceee
Confidence            78999999999999999999999999999999999999999999999998876542 23678888999999999999999


Q ss_pred             Hhh-CCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        181 RLK-GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       181 ~~K-g~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++| |+|+||+|.|+++++++|++|++.++|+|++++
T Consensus        80 ~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~  116 (174)
T PF02866_consen   80 KAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLD  116 (174)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEE
T ss_pred             eeccccCcCCHHHHHHHHHHHHhhcccccccceeccc
Confidence            999 999999999999999999999999999999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.94  E-value=1.1e-27  Score=189.23  Aligned_cols=97  Identities=42%  Similarity=0.675  Sum_probs=87.3

Q ss_pred             ccccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          2 LTTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         2 ~~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      ++++|++++. .+..+.+++|++++|||+||+|+|.|++||++|++++..|++|++++++++++++|+++++++|||+|+
T Consensus        44 ~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~  123 (141)
T PF00056_consen   44 LDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDV  123 (141)
T ss_dssp             HHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHH
T ss_pred             hhhhhhhhhcccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHH
Confidence            4556665443 344556689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEe
Q psy17689         81 LTYVSWKLSGFPKNRVIG   98 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG   98 (216)
                      ||+++++.+||||+||||
T Consensus       124 ~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen  124 MTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             HHHHHHHHHTSSGGGEEE
T ss_pred             HHHHHHHhhCcCcccCcC
Confidence            999999999999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.91  E-value=6.2e-24  Score=194.84  Aligned_cols=132  Identities=20%  Similarity=0.181  Sum_probs=117.7

Q ss_pred             CceEEEcCCccc-cCCccEEEEcCCC------------CCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeE
Q psy17689         12 GVNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCT   70 (216)
Q Consensus        12 ~~~v~~~~~~~~-~~daDivvitag~------------~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~i   70 (216)
                      ..++..|+|.++ ++|||+||.+..+            |.|.|.        -......+|+++++++++.|+++||+|+
T Consensus        59 ~~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~  138 (425)
T cd05197          59 DIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAW  138 (425)
T ss_pred             CeEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcE
Confidence            457888999885 9999999998643            223321        2578889999999999999999999999


Q ss_pred             EEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeec
Q psy17689         71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNL  149 (216)
Q Consensus        71 iivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l  149 (216)
                      +|++|||+|+||+++++.+  |++||||+|+.  +.|+++.+|+.+|+++++|+++++| |||    ++||+++++|+|+
T Consensus       139 lin~TNP~di~t~a~~~~~--p~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~~~~G~~l  210 (425)
T cd05197         139 YLNFTNPAGEVTEAVRRYV--PPEKAVGLCNV--PIGVMEIVAKLLGESEEKVDWQYAGLNHG----IWLNRVRYNGGDV  210 (425)
T ss_pred             EEecCChHHHHHHHHHHhC--CCCcEEEECCC--HHHHHHHHHHHhCCCHHHeEEEEEeccCe----EeeEeEEECCeec
Confidence            9999999999999999985  88999999888  9999999999999999999999999 997    9999999999997


Q ss_pred             cc
Q psy17689        150 RE  151 (216)
Q Consensus       150 ~~  151 (216)
                      ..
T Consensus       211 ~p  212 (425)
T cd05197         211 TP  212 (425)
T ss_pred             HH
Confidence            73

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.89  E-value=2e-23  Score=191.87  Aligned_cols=129  Identities=19%  Similarity=0.265  Sum_probs=117.0

Q ss_pred             CceEEEcCC-ccccCCccEEEEcCCCC-CCCC--------------cCHHHH--------HHHhHHHHHHHHHHHHhhCC
Q psy17689         12 GVNVLTRLN-YALSEGSRIVIVTAGVR-QREG--------------ESRLSL--------VERNVNIFKGIIPNIVKYSP   67 (216)
Q Consensus        12 ~~~v~~~~~-~~~~~daDivvitag~~-~k~g--------------~~r~dl--------l~~N~~i~~~i~~~i~~~~p   67 (216)
                      ..++..++| +++++|||+||++++++ ++++              ++|.+.        +.+|+++++++++.|+++||
T Consensus        60 ~~~i~~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p  139 (431)
T PRK15076         60 SAKITATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCP  139 (431)
T ss_pred             CeEEEEECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCC
Confidence            456777889 57799999999999997 5667              677788        99999999999999999999


Q ss_pred             CeEEEEEcCchhHHHHHHHHhcCCCCCCEEeec-cchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeEC
Q psy17689         68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG-TNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVA  145 (216)
Q Consensus        68 ~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~G-t~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~  145 (216)
                      +|++|++|||+|++|+.++   ++|+.||||+| +.+|+.   +.+|+.+|+++++|++++.| ||    +.++.+.+.+
T Consensus       140 ~a~iin~tNP~divt~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH----~~W~~~~~~~  209 (431)
T PRK15076        140 DALLLNYVNPMAMNTWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINH----MAWYLELERK  209 (431)
T ss_pred             CeEEEEcCChHHHHHHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecc----hhhheeeeEC
Confidence            9999999999999999998   77889999999 999986   77999999999999999999 99    7799999998


Q ss_pred             Ceecc
Q psy17689        146 GVNLR  150 (216)
Q Consensus       146 g~~l~  150 (216)
                      |+++.
T Consensus       210 G~D~~  214 (431)
T PRK15076        210 GEDLY  214 (431)
T ss_pred             CcchH
Confidence            87754

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.89  E-value=7.5e-23  Score=187.41  Aligned_cols=131  Identities=21%  Similarity=0.284  Sum_probs=119.2

Q ss_pred             CceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHH--------------------HHHhHHHHHHHHHHHHhhCCCeE
Q psy17689         12 GVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSL--------------------VERNVNIFKGIIPNIVKYSPQCT   70 (216)
Q Consensus        12 ~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~~p~~i   70 (216)
                      ..+++.|+|+++ ++|||+||+++++++.++++|++.                    ..+|+++++++++.|+++||+|+
T Consensus        60 ~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~  139 (419)
T cd05296          60 PIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAW  139 (419)
T ss_pred             CeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeE
Confidence            457888999886 999999999999988888877774                    78899999999999999999999


Q ss_pred             EEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeec
Q psy17689         71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNL  149 (216)
Q Consensus        71 iivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l  149 (216)
                      +|++|||+|++|+++++.+   ++||||+|+.  +.|+++++|+.+|+++++++.+|+| ||    +-++.+++.+|+++
T Consensus       140 lin~TNP~~ivt~a~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~~v~GlNH----~~w~~~~~~~G~D~  210 (419)
T cd05296         140 LINFTNPAGIVTEAVLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFIDYAGLNH----LGWLRRVLLDGEDV  210 (419)
T ss_pred             EEEecCHHHHHHHHHHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceEEEEeccc----ceeeeeeeECCccc
Confidence            9999999999999999987   7899999655  4899999999999999999999999 99    77999999999876


Q ss_pred             cc
Q psy17689        150 RE  151 (216)
Q Consensus       150 ~~  151 (216)
                      ..
T Consensus       211 ~p  212 (419)
T cd05296         211 LP  212 (419)
T ss_pred             HH
Confidence            53

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.82  E-value=5.4e-19  Score=162.69  Aligned_cols=132  Identities=20%  Similarity=0.290  Sum_probs=112.5

Q ss_pred             CceEEEcCCccc-cCCccEEEEcCCC------------CCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeE
Q psy17689         12 GVNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCT   70 (216)
Q Consensus        12 ~~~v~~~~~~~~-~~daDivvitag~------------~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~i   70 (216)
                      ..++..|+|.++ ++|||+||.+..+            |.|.|.        --.....+|+++++++++.|+++||+|+
T Consensus        59 ~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~  138 (437)
T cd05298          59 EIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAW  138 (437)
T ss_pred             CeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeE
Confidence            457888999875 9999999998643            223222        2577899999999999999999999999


Q ss_pred             EEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeEC-Cee
Q psy17689         71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVA-GVN  148 (216)
Q Consensus        71 iivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~-g~~  148 (216)
                      +|++|||+|++|+.+++.  +|+.||||+ |.--. -++..+|+.+|+++++++..+.| ||    +.++.+.+.. |++
T Consensus       139 lin~tNP~~~vt~~~~~~--~~~~kviGl-C~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~~G~D  210 (437)
T cd05298         139 ILNYSNPAAIVAEALRRL--FPNARILNI-CDMPI-AIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGED  210 (437)
T ss_pred             EEEecCcHHHHHHHHHHH--CCCCCEEEE-CCcHH-HHHHHHHHHhCCCHHHceEEEEeecc----hhhhhheEECCCCc
Confidence            999999999999999988  888999999 55443 37888999999999999999999 99    7799999998 877


Q ss_pred             ccc
Q psy17689        149 LRE  151 (216)
Q Consensus       149 l~~  151 (216)
                      +..
T Consensus       211 ~~p  213 (437)
T cd05298         211 LLP  213 (437)
T ss_pred             hHH
Confidence            653

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.81  E-value=1.9e-19  Score=165.33  Aligned_cols=130  Identities=22%  Similarity=0.240  Sum_probs=117.4

Q ss_pred             CceEEEcCCcc-ccCCccEEEEcCCCCCCCCcCH----------------------HHHHHHhHHHHHHHHHHHHhhCCC
Q psy17689         12 GVNVLTRLNYA-LSEGSRIVIVTAGVRQREGESR----------------------LSLVERNVNIFKGIIPNIVKYSPQ   68 (216)
Q Consensus        12 ~~~v~~~~~~~-~~~daDivvitag~~~k~g~~r----------------------~dll~~N~~i~~~i~~~i~~~~p~   68 (216)
                      ..++..++|++ +++|||+||++++.+..++++|                      .....+|+++++++++.+.++||+
T Consensus        59 ~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~  138 (423)
T cd05297          59 PLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPD  138 (423)
T ss_pred             CeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCC
Confidence            35667788965 6999999999999877777766                      678889999999999999999999


Q ss_pred             eEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCe
Q psy17689         69 CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGV  147 (216)
Q Consensus        69 ~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~  147 (216)
                      ++++++|||+|+||+.+++.++   .|+||+|+.  +.|+++.+|+.+++++++|+++++| ||    +.+|.+.+.+|+
T Consensus       139 a~~i~~tNPv~i~t~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~~~~GlNH----~~w~~~~~~~G~  209 (423)
T cd05297         139 AWLLNYANPMAELTWALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDYQVAGINH----MAWLLKFEYNGE  209 (423)
T ss_pred             CEEEEcCChHHHHHHHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEEEEEeecc----HhhhhhheECCc
Confidence            9999999999999999999988   699999767  8899999999999999999999999 99    779999999888


Q ss_pred             ecc
Q psy17689        148 NLR  150 (216)
Q Consensus       148 ~l~  150 (216)
                      ++.
T Consensus       210 d~~  212 (423)
T cd05297         210 DLY  212 (423)
T ss_pred             chH
Confidence            765

linked to 3D####ucture

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.44  E-value=4.9e-13  Score=122.17  Aligned_cols=130  Identities=25%  Similarity=0.297  Sum_probs=107.8

Q ss_pred             ceEEEcCCccc-cCCccEEEEcCCC------------CCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeEE
Q psy17689         13 VNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCTL   71 (216)
Q Consensus        13 ~~v~~~~~~~~-~~daDivvitag~------------~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~ii   71 (216)
                      .++..++|.++ ++|||+|+.+..+            |.|.|-        .-.....++++++-+|++.|.++||+|++
T Consensus        63 ~kv~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~  142 (442)
T COG1486          63 VKVEATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWM  142 (442)
T ss_pred             eEEEEecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceE
Confidence            56778888875 9999999998642            444332        24677889999999999999999999999


Q ss_pred             EEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCC-CceeEEEEc-cCCCCcccceeeeeECCeec
Q psy17689         72 LIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVYGFIIG-EHGDSSVPVWSGVNVAGVNL  149 (216)
Q Consensus        72 ivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~-~~v~~~v~G-~HGds~vp~~S~~~v~g~~l  149 (216)
                      ++.|||+.++|+.+.+.++  .-|++|+ |.-. .-....+|+.|++++ ++++.-+.| ||    +.+|..++.+|+++
T Consensus       143 lNytNP~~~vTeAv~r~~~--~~K~VGl-Ch~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH----~~w~~~~~~~G~d~  214 (442)
T COG1486         143 LNYTNPAAIVTEAVRRLYP--KIKIVGL-CHGP-IGIAMELAEVLGLEPREDLRYRVAGLNH----MVWILRVRDDGEDL  214 (442)
T ss_pred             EeccChHHHHHHHHHHhCC--CCcEEee-CCch-HHHHHHHHHHhCCCchhceeEEEeechh----hhhhhHhhhcCccc
Confidence            9999999999999999865  3489999 4443 346888999999975 999999999 99    77999999888664


Q ss_pred             c
Q psy17689        150 R  150 (216)
Q Consensus       150 ~  150 (216)
                      .
T Consensus       215 ~  215 (442)
T COG1486         215 Y  215 (442)
T ss_pred             h
Confidence            3

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.35  E-value=1e-11  Score=102.13  Aligned_cols=104  Identities=23%  Similarity=0.255  Sum_probs=81.7

Q ss_pred             CCceEEEcCCccc-cCCccEEEEcCCC------------CCCCCcC----------HHHHHHHhHHHHHHHHHHHHhhCC
Q psy17689         11 KGVNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGES----------RLSLVERNVNIFKGIIPNIVKYSP   67 (216)
Q Consensus        11 ~~~~v~~~~~~~~-~~daDivvitag~------------~~k~g~~----------r~dll~~N~~i~~~i~~~i~~~~p   67 (216)
                      ...++..++|.++ ++|||+||.+..+            |.|.|..          -.....++++++.++++.|+++||
T Consensus        57 ~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~P  136 (183)
T PF02056_consen   57 ADLKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCP  136 (183)
T ss_dssp             TSSEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            3567888999886 9999999999753            5554432          578899999999999999999999


Q ss_pred             CeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCC
Q psy17689         68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL  118 (216)
Q Consensus        68 ~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v  118 (216)
                      +|+++++|||+.++|+.+.+..+  .-|++|+ |.-- .-+...+|+.||.
T Consensus       137 dAw~iNytNP~~~vt~a~~r~~~--~~k~vGl-Ch~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  137 DAWLINYTNPMGIVTEALSRYTP--KIKVVGL-CHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             TSEEEE-SSSHHHHHHHHHHHST--TSEEEEE--SHH-HHHHHHHHHHHT-
T ss_pred             CcEEEeccChHHHHHHHHHHhCC--CCCEEEE-CCCH-HHHHHHHHHHhCc
Confidence            99999999999999999998864  3589999 5544 3467778998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.46  E-value=1  Score=41.55  Aligned_cols=68  Identities=13%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             ceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCC-eEEEE-EcCchhHHHHHHH
Q psy17689         13 VNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLI-VSNPVDILTYVSW   86 (216)
Q Consensus        13 ~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~-~iiiv-vtNPvd~~t~~~~   86 (216)
                      .+...|+||++ ++++|+++|+.|-|.++.- -     .+...+...++.|.++.+. .++++ -|=|+..-..+-+
T Consensus        62 gRl~fTtd~~~a~~~adv~fIavgTP~~~dg-~-----aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~  132 (414)
T COG1004          62 GRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-S-----ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA  132 (414)
T ss_pred             CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCC-C-----ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence            34778999996 9999999999999987632 1     2456777777888887655 33332 2456665444433

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=90.03  E-value=3.1  Score=32.32  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh-HHHHHHHHhcCCCCCCEEeecc
Q psy17689         24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD-ILTYVSWKLSGFPKNRVIGSGT  101 (216)
Q Consensus        24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd-~~t~~~~~~sg~~~~~viG~Gt  101 (216)
                      =.++|+|++++-            .....+.++++++.+++.++ +..+++-+|+.+ -..  .++..|++  ++|+.||
T Consensus        51 e~~adii~iSsl------------~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~--~l~~~Gvd--~~~~~gt  114 (132)
T TIGR00640        51 EADVHVVGVSSL------------AGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFD--ELKEMGVA--EIFGPGT  114 (132)
T ss_pred             HcCCCEEEEcCc------------hhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHH--HHHHCCCC--EEECCCC
Confidence            358899988753            23456778999999999876 445555555443 333  35667874  8999999


Q ss_pred             chhH
Q psy17689        102 NLDS  105 (216)
Q Consensus       102 ~lds  105 (216)
                      .+..
T Consensus       115 ~~~~  118 (132)
T TIGR00640       115 PIPE  118 (132)
T ss_pred             CHHH
Confidence            8876

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.96  E-value=0.99  Score=39.04  Aligned_cols=69  Identities=20%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .+..++|++++++||+||++.-    +          +..+-.++...+.+++ |++++  +||=..+-...+.+..+.|
T Consensus        70 ~l~~~~~~~~~~~aDlVi~av~----e----------~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~~~~  133 (282)
T PRK05808         70 RITGTTDLDDLKDADLVIEAAT----E----------NMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAATKRP  133 (282)
T ss_pred             CeEEeCCHHHhccCCeeeeccc----c----------cHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhhCCC
Confidence            4555778888999999999862    1          2333345555566775 56655  4554444333444444433


Q ss_pred             CCCEEee
Q psy17689         93 KNRVIGS   99 (216)
Q Consensus        93 ~~~viG~   99 (216)
                       .|++|+
T Consensus       134 -~r~ig~  139 (282)
T PRK05808        134 -DKVIGM  139 (282)
T ss_pred             -cceEEe
Confidence             456554

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=85.84  E-value=6.2  Score=32.80  Aligned_cols=47  Identities=9%  Similarity=0.024  Sum_probs=28.2

Q ss_pred             cCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689         18 RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus        18 ~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      +++.+.++++|+||++.-.                ..+.++.+.+...-.+.++|-++||.+.
T Consensus        60 ~~~~ea~~~aDvVilavp~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        60 ADNAEAAKRADVVILAVPW----------------DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             eChHHHHhcCCEEEEECCH----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            4445669999999998631                1122223333333234688899999753

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		2e-80
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		2e-80
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		2e-79
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		2e-78
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		9e-78
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		1e-77
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		1e-77
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-77
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-77
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		3e-77
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		1e-76
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		7e-71
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		7e-71
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		6e-66
3ldh_A	330	A Comparison Of The Structures Of Apo Dogfish M4 La		3e-48
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		9e-47
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		3e-46
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-46
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		1e-45
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		2e-45
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		4e-45
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		5e-45
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		2e-44
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		3e-44
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		9e-44
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		4e-42
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		2e-41
1ldb_A	317	Structure Determination And Refinement Of Bacillus		2e-41
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		3e-41
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		4e-41
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		2e-40
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		3e-40
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		3e-34
2i6t_A	303	Orthorhombic Structure Of The Ldh Domain Of Human U		1e-30
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-27
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		2e-27
1guz_A	310	Structural Basis For Thermophilic Protein Stability		2e-27
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		6e-25
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		6e-25
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		7e-25
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		7e-25
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		7e-25
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		8e-25
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		9e-25
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		9e-25
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		1e-24
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		2e-24
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		3e-23
1guy_A	309	Structural Basis For Thermophilic Protein Stability		3e-23
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		5e-23
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		8e-23
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-22
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		1e-21
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		1e-21
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		3e-21
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		4e-21
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		6e-21
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		1e-20
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		1e-20
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		2e-20
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		2e-20
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-20
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		2e-20
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		3e-20
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-20
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-20
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		4e-20
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-19
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		3e-18
1hyh_A	309	Crystal Structure Of L-2-hydroxyisocaproate Dehydro		1e-16
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		9e-12
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		4e-11
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		2e-10
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		2e-09
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		6e-09
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		6e-09
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		2e-08
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-07
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		2e-07
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		5e-05
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		5e-05

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 174/207 (84%)
Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   +++  +Y+++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC
Sbjct: 72  LKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQC 131
Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++G
Sbjct: 132 KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 191
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWA 251
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+A L  +++ N  ++H IST+I+
Sbjct: 252 IGLSVADLAESIMKNLRRVHPISTMIK 278

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 174/207 (84%)
Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   +++  +Y+++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC
Sbjct: 71  LKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQC 130
Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++G
Sbjct: 131 KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 190
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKGYTSWA
Sbjct: 191 EHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWA 250
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IGLS+A L  +++ N  ++H IST+I+
Sbjct: 251 IGLSVADLAESIMKNLRRVHPISTMIK 277

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 175/216 (81%)
Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           V+     S F    ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIP
Sbjct: 62  VMDLQHGSLFLKTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIP 121
Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
           NIVKYSP C L++VSNPVDILTYV+WKLSGFP++RVIGSGTNLDS RFR L+ +KL L P
Sbjct: 122 NIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHP 181
Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
            S + +I+GEHGDSSVPVWSGVNVAGV+L+ +NP +GTEGD E +  +H +VV+ AYE+I
Sbjct: 182 SSCHAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVI 241
Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           +LKGYTSWAIG+S+A L  +++ N +K+H +STL+Q
Sbjct: 242 KLKGYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQ 277

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score =  288 bits (736), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 168/197 (85%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y ++  SR+V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVKYSP C LL+VSNPVD
Sbjct: 82  DYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD 141
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+I+GEHGDSSVPVW
Sbjct: 142 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+ ++P +GT+ D E +  +H +VV+SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 202 SGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLKGYTSWAIGLSVADLAE 261
Query: 200 TLLNNTNKIHAISTLIQ 216
           +++ N  ++H IST+I+
Sbjct: 262 SIMKNLRRVHPISTMIK 278

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score =  285 bits (730), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 128/197 (64%), Positives = 170/197 (86%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C +++VSNPVD
Sbjct: 82  DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD 141
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+E+NP +GT+ D+E + ++H  VV SAYE+I+LKGYT+WAIGLS+A L  
Sbjct: 202 SGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE 261
Query: 200 TLLNNTNKIHAISTLIQ 216
           ++L N ++IH +ST+++
Sbjct: 262 SMLKNLSRIHPVSTMVK 278

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score =  285 bits (730), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 128/197 (64%), Positives = 170/197 (86%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C +++VSNPVD
Sbjct: 82  DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD 141
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+E+NP +GT+ D+E + ++H  VV SAYE+I+LKGYT+WAIGLS+A L  
Sbjct: 202 SGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE 261
Query: 200 TLLNNTNKIHAISTLIQ 216
           ++L N ++IH +ST+++
Sbjct: 262 SMLKNLSRIHPVSTMVK 278

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 169/207 (81%)
Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            K   ++   +Y+++  S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIPNI+KYSP C
Sbjct: 72  LKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNC 131
Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            LL+VSNPVDILTYV+WKLSG P+NRVIGSGTNLDS RFR L+ +KLG+ P + +G++IG
Sbjct: 132 ILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIG 191
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDSSVPVWSGVNVAGV L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLKGYTSWA 251
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
           IG+S A L  ++L N  K H +STL++
Sbjct: 252 IGMSAADLCQSILKNLRKCHPVSTLVK 278

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 168/197 (85%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y ++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LLIVSNPVD
Sbjct: 81  DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD 140
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SG+NVAGV+L+ ++P +GT+ D E++ ++H  VV SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 201 SGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
           +++ N  ++H +ST+I+
Sbjct: 261 SIMKNLRRVHPVSTMIK 277

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 168/197 (85%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y ++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LLIVSNPVD
Sbjct: 81  DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD 140
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SG+NVAGV+L+ ++P +GT+ D E++ ++H  VV SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 201 SGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
           +++ N  ++H +ST+I+
Sbjct: 261 SIMKNLRRVHPVSTMIK 277

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score =  284 bits (726), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 169/197 (85%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LL+VSNPVD
Sbjct: 81  DYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVD 140
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+   S +G+I+GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SG+NVAGV+L+ ++P +GT+ D E++ ++H  VV+SAYE+I+LKGYT+WAIGLS+A L  
Sbjct: 201 SGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
           +++ N  ++H IST+++
Sbjct: 261 SIMKNLRRVHPISTMLK 277

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 168/197 (85%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C +++VSNPVD
Sbjct: 83  DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD 142
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WKLSG PK+RVIGSG NLDS RFR L+ +KLG+ P S +G+I+GEHGDSSV VW
Sbjct: 143 ILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSVAVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV L+++NP +GT+ D+E + ++H  VV SAYE+I+LKGYT+WAIGLS+A L  
Sbjct: 203 SGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE 262
Query: 200 TLLNNTNKIHAISTLIQ 216
           ++L N ++IH +ST++Q
Sbjct: 263 SMLKNLSRIHPVSTMVQ 279

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score =  263 bits (671), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 160/197 (81%), Gaps = 3/197 (1%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C +L+VSNPVD
Sbjct: 83  DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVD 142
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           +LTYV+WKLSG P +R+IGSG NLDS RFR L+ ++LG+   S +G++IGEHGDS   VW
Sbjct: 143 VLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SG+NVA + L   +P  GT  D +++ KLH DVV+SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 203 SGMNVASIKL---HPLDGTNKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE 259
Query: 200 TLLNNTNKIHAISTLIQ 216
           T++ N  ++H +ST+++
Sbjct: 260 TIMKNLCRVHPVSTMVK 276

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score =  263 bits (671), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 160/197 (81%), Gaps = 3/197 (1%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C +L+VSNPVD
Sbjct: 82  DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVD 141
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           +LTYV+WKLSG P +R+IGSG NLDS RFR L+ ++LG+   S +G++IGEHGDS   VW
Sbjct: 142 VLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SG+NVA + L   +P  GT  D +++ KLH DVV+SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 202 SGMNVASIKL---HPLDGTNKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE 258
Query: 200 TLLNNTNKIHAISTLIQ 216
           T++ N  ++H +ST+++
Sbjct: 259 TIMKNLCRVHPVSTMVK 275

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score =  246 bits (628), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 106/197 (53%), Positives = 152/197 (77%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y +S  S++VI+TAG R   G++RL L++RNV I K I+P +++ SP C +++V+NPVD
Sbjct: 81  DYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD 140
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV WK+SGFP  RVIGSG NLDS RFR L+ +KLG++P S +G+++GEHGDSSVP+W
Sbjct: 141 ILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV L+ +NPAIGT+ + + +  +H  VV   YE++ +KGYTSWAIGLS+  L  
Sbjct: 201 SGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLAR 260
Query: 200 TLLNNTNKIHAISTLIQ 216
           ++L N  ++H ++TL++
Sbjct: 261 SILKNLKRVHPVTTLVK 277

>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate Dehydrogenase And Its Ternary Complexes Length = 330

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 133/214 (62%), Gaps = 38/214 (17%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C   +      
Sbjct: 83  DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT 142
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
                 WKLSG P +R+IGSG NLDS RFR L+ ++LG+    V G++IG+HGDS   VW
Sbjct: 143 DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQHGDSVPSVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGL------- 192
           SG+  A                     KLH DVV+SAYE+I+LKGYTSWAIGL       
Sbjct: 203 SGMWDA---------------------KLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241
Query: 193 ----------SIASLTYTLLNNTNKIHAISTLIQ 216
                     S+A L  T++ +  ++H +ST+++
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVK 275

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 125/199 (62%), Gaps = 7/199 (3%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y   + + IV + AG  Q+ GE+RL LVE+N+ IFKGI+  ++        L+ +NPVDI
Sbjct: 68  YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDI 127
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           LTY +WK SG PK RVIGSGT LDS RFR +L++  G +P++V+  IIGEHGD+ +PVWS
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEHGDTELPVWS 187
Query: 141 GVNVAGV---NLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
             NV GV    L E N A       EE  ++  DV N+AY II  KG T + + +S+A +
Sbjct: 188 HANVGGVPVSELVEKNDAY----KQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARI 243
Query: 198 TYTLLNNTNKIHAISTLIQ 216
           T  +L+N N I  +ST + 
Sbjct: 244 TKAILHNENSILTVSTYLD 262

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 136/195 (69%), Gaps = 1/195 (0%)
Query: 23  LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT 82
           +   + +V++TAG RQ+ G+SRL LV   VNI K I+PN+VK +P    ++++NPVDI T
Sbjct: 72  ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIAT 131
Query: 83  YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGV 142
           +V+ KL+G P+N++ GSGTNLDS R R L+AQ+ G++ ++V+ +I GEHGDS VP+W   
Sbjct: 132 HVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESA 191
Query: 143 NVAGVNLREVNPAIGTEG-DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTL 201
            + GV + +  P  G +  D ++  ++H +V N+AY+II  KG T++AIG+S   +   +
Sbjct: 192 TIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAV 251
Query: 202 LNNTNKIHAISTLIQ 216
           L++TN+I  +S++++
Sbjct: 252 LHDTNRILPVSSMLK 266

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 124/199 (62%), Gaps = 7/199 (3%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y   + + IV + AG  Q+ GE+RL LVE+N+ IFKGI+  ++        L+ +NPVDI
Sbjct: 68  YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDI 127
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           LTY +WK SG PK RVIGSGT LDS RFR +L++  G +P++V   IIGEHGD+ +PVWS
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPVWS 187
Query: 141 GVNVAGV---NLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
             NV GV    L E N A       EE  ++  DV N+AY II  KG T + + +S+A +
Sbjct: 188 HANVGGVPVSELVEKNDAY----KQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARI 243
Query: 198 TYTLLNNTNKIHAISTLIQ 216
           T  +L+N N I  +ST + 
Sbjct: 244 TKAILHNENSILTVSTYLD 262

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 125/195 (64%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y   EG+R V++ AGV QR GE+RL L++RN  +F  ++P +++ +P+  LL+ +NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++T V+++LSG P  RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   V GV L E   A G     E+  ++   V  +AY II  KG T + IG  +A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
            +L +   ++ +S  
Sbjct: 241 AILTDEKGVYTVSAF 255

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 125/195 (64%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y   EG+R V++ AGV QR GE+RL L++RN  +F  ++P +++ +P+  LL+ +NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++T V+++LSG P  RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   V GV L E   A G     E+  ++   V  +AY II  KG T + IG  +A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
            +L +   ++ +S  
Sbjct: 241 AILTDEKGVYTVSAF 255

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 124/195 (63%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y   EG+R V++ AGV QR GE+RL L++RN  +F  ++P +++ +P+  LL+ +NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++T V++ LSG P  RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   V GV L E   A G     E+  ++   V  +AY II  KG T + IG  +A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
            +L +   ++ +S  
Sbjct: 241 AILTDEKGVYTVSAF 255

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 124/195 (63%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y   EG+R V++ AGV QR GE+RL L++RN  +F  ++P +++ +P+  LL+ +NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           + T V+++LSG P  RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   V GV L E   A G     E+  ++   V  +AY II  KG T + IG  +A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
            +L +   ++ +S  
Sbjct: 241 AILTDEKGVYTVSAF 255

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 128/199 (64%), Gaps = 7/199 (3%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y+ ++ + +V++TAG  Q+ GE+RL LV +N+ I K I+  IV        L+ +NPVDI
Sbjct: 71  YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI 130
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           LTY +WKLSGFPKNRV+GSGT+LD+ RFR  +A+ + +   SV+ +I+GEHGD+  PVWS
Sbjct: 131 LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTEFPVWS 190
Query: 141 GVNVAGVNLRE---VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
             N+ GV + E    +P I      ++  K+  DV N AYEII+LKG T + I  ++A +
Sbjct: 191 HANIGGVTIAEWVKAHPEIK----EDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARI 246
Query: 198 TYTLLNNTNKIHAISTLIQ 216
           +  +LN+ N +  +S  + 
Sbjct: 247 SKAILNDENAVLPLSVYMD 265

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 129/199 (64%), Gaps = 7/199 (3%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y+ ++ + +V++TAG  Q+ GE+RL LV +N+ I K I+  IV        L+ +NPVDI
Sbjct: 71  YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI 130
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           LTY +WKLSGFPKNRV+GSGT+LD+ RFR  +A+ + +   SV+ +I+GEHGD+  PVWS
Sbjct: 131 LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWS 190
Query: 141 GVNVAGVNLRE---VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
             N+ GV + E    +P I      ++  K+  DV ++AYEII+LKG T + I  ++A +
Sbjct: 191 HANIGGVTIAEWVKAHPEIK----EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI 246
Query: 198 TYTLLNNTNKIHAISTLIQ 216
           +  +LN+ N +  +S  + 
Sbjct: 247 SKAILNDENAVLPLSVYMD 265

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 129/199 (64%), Gaps = 7/199 (3%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y+ ++ + +V++TAG  ++ GE+RL LV +N+ I K I+  IV        L+ +NPVDI
Sbjct: 70  YSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVDI 129
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           LTY +WKLSGFPKNRV+GSGT+LD+ RFR  +A+ + +   SV+ +I+GEHGD+  PVWS
Sbjct: 130 LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWS 189
Query: 141 GVNVAGVNLRE---VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
             N+ GV + E    +P I      ++  K+  DV ++AYEII+LKG T + I  ++A +
Sbjct: 190 HANIGGVTIAEWVKAHPEIK----EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI 245
Query: 198 TYTLLNNTNKIHAISTLIQ 216
           +  +LN+ N +  +S  + 
Sbjct: 246 SKAILNDENAVLPLSVYMD 264

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 130/206 (63%)
Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
           F G   L   +Y+  +   +++VTAG  ++ GE+RL L ++NV I K +  NI+KY    
Sbjct: 58  FMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
            +L+VSNPVDI+TY+  K SG P  +VIGSGT LDS+RFR LL++KLG+  ++V+G+IIG
Sbjct: 118 VILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
           EHGDS +P+WS  ++AG N+ E           E+  K+  DV  +   II+ KG T + 
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYG 237
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLI 215
           I +SI ++  TLL N N I  + T+I
Sbjct: 238 IAVSINTIVETLLKNQNTIRTVGTVI 263

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 1/197 (0%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y     + +V++ AG  Q+ GE+RL LV++N+ IF+ I+ +++    Q   L+ +NPVD
Sbjct: 68  DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTY +WK SG P  RVIGSGT LD+ RFR LL +   ++P++V+ +IIGEHGD+ +PVW
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   +  + +R++  + G E   ++  ++  +V ++AY+II  KG T + I + +A +T 
Sbjct: 188 SQAYIGVMPIRKLVESKGEEA-QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 200 TLLNNTNKIHAISTLIQ 216
            +L+N N I  +S  + 
Sbjct: 247 AILHNENAILTVSAYLD 263

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 1/197 (0%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y     + +V++ AG  Q+ GE+RL LV++N+ IF+ I+ +++    Q   L+ +NPVD
Sbjct: 68  DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTY +WK SG P  RVIGSGT LD+ RFR LL +   ++P++V+ +IIGEHGD+ +PVW
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   +  + +R++  + G E   ++  ++  +V ++AY+II  KG T + I + +A +T 
Sbjct: 188 SQAYIGVMPIRKLVESKGEEA-QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 200 TLLNNTNKIHAISTLIQ 216
            +L+N N I  +S  + 
Sbjct: 247 AILHNENAILTVSAYLD 263

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 122/197 (61%), Gaps = 1/197 (0%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA  +GS +VIV AGV Q+ GE+RL L+ RN  + K I  N+ KY+P   +++V+NPVD
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           +LTY   K SG    +V GSGT LD+ R R L+AQ  G SP SV+ ++IGEHGDS VPVW
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SG  + G+ L+ +   +  + D++           +AYEII  KG T +AI L++A +  
Sbjct: 181 SGAMIGGIPLQNMC-QVCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 200 TLLNNTNKIHAISTLIQ 216
           ++  +  ++  +S  ++
Sbjct: 240 SIFFDEKRVLTLSVYLE 256

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 8/200 (4%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
            Y+    + +V++ AG RQ+ GE+RL LV +N+ IFK I+  ++        L+ +NPVD
Sbjct: 68  EYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD 127
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           IL Y +WK SG PK RVIGSGT LDS RFR+LL++   ++P SV   IIGEHGD+ +PVW
Sbjct: 128 ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLR---EVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIAS 196
           S  N+AG  L+   E  P    EG   +  ++     ++AY+II+ KG T + + + +A 
Sbjct: 188 SHANIAGQPLKTLLEQRP----EGKA-QIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 197 LTYTLLNNTNKIHAISTLIQ 216
           +T  +  N + +  +S L++
Sbjct: 243 ITEAIFRNEDAVLTVSALLE 262

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 2/208 (0%)
Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
            L   D  +F     +    Y+  + + +V++TAG  Q+ GESRL LV +N+NI   I+ 
Sbjct: 47  ALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVK 106
Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
            +V        L+ +NPVDILTY +WK SGFPK RVIGSGT+LDS R RV L ++  + P
Sbjct: 107 PVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDP 166
Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
            SV  +I+GEHGDS    +S   +    +R+V    G   D  +  KL   V N AY+II
Sbjct: 167 RSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDD--DLAKLEDGVRNKAYDII 224
Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKI 208
            LKG T + IG ++  ++  +L + N +
Sbjct: 225 NLKGATFYGIGTALMRISKAILRDENAV 252

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 121/200 (60%), Gaps = 8/200 (4%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
            Y+    + +V++ AG  Q+ GE+RL LV +N+ IFK I+  ++        L+ +NPVD
Sbjct: 68  EYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD 127
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           IL Y +WK SG PK RVIGSGT LDS RFR+LL++   ++P SV   IIGEHGD+ +PVW
Sbjct: 128 ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLR---EVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIAS 196
           S  N+AG  L+   E  P    EG   +  ++     ++AY+II+ KG T + + + +A 
Sbjct: 188 SHANIAGQPLKTLLEQRP----EGKA-QIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 197 LTYTLLNNTNKIHAISTLIQ 216
           +T  +  N + +  +S L++
Sbjct: 243 ITEAIFRNEDAVLTVSALLE 262

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Query: 27  SRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW 86
           +++VI+TAG  Q+ GESRL L+E+N +IF+ ++P I + +P   LL+ SNPVD+LT ++ 
Sbjct: 68  AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLAT 127
Query: 87  KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAG 146
           +L+  P   VIGSGT LDS RFR L+AQ  G+     +G+++GEHGDS V  WS   VAG
Sbjct: 128 QLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSAMVAG 185
Query: 147 VNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTN 206
           + + +   A     + +   K+     N+A  II  K  T + IG ++A +T  +L +  
Sbjct: 186 MPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITEAVLRDRR 245
Query: 207 KIHAIST 213
            +  +S 
Sbjct: 246 AVLTVSA 252

>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A Length = 303

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 25/214 (11%)
Query: 4   TNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
           T D   F   NV    + + S  S++VI T        +S L +V+ NV++F+ ++P + 
Sbjct: 55  TMDLEIFNLPNVEISKDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALG 113
Query: 64  KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
            YS    LL+ S PV+I+TYV+WKLS FP NRVIG G NLDS R + ++   L       
Sbjct: 114 HYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGK 173
Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVV---NSAYEII 180
             ++IGE G+  V  WSG                     +E    HT  V   N A E++
Sbjct: 174 EVWVIGEQGEDKVLTWSG---------------------QEEVVSHTSQVQLSNRAMELL 212
Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTL 214
           R+KG  SW++GLS+A +  +++NN  K+H++S L
Sbjct: 213 RVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSAL 246

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Query: 14  NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLI 73
           N++   +YA +  S +V++TAG+ ++ G SR  LV  N  I K I  +I K+SP   +++
Sbjct: 66  NIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 74  VSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
           ++NPVD +TY  +K +GFPK RVIG    LD+ RFR  +AQ+L LS + + GF++G HGD
Sbjct: 126 LTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGD 185
Query: 134 SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS--WAIG 191
             VP+       G+ L  + P    E   E   K          EI+ L G  S  +A  
Sbjct: 186 DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRK-------GGGEIVGLLGNGSAYYAPA 238
Query: 192 LSIASLTYTLLNNTNKI 208
            S+  +T  +L +  ++
Sbjct: 239 ASLVEMTEAILKDQRRV 255

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  S IVI+TAG+ ++ G +R  L+ +N  I K +  NI+K+S    +++VSNP+D
Sbjct: 63  DYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I+T+V+W  SG PK RVIG    LD+ RFR  +A +LG+S + +   ++G HGD+ VPV 
Sbjct: 123 IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR--LKGYTSWAIGLSIASL 197
               VAG+ + ++ PA       E   KL     N   EI+    +G   +A   S+  +
Sbjct: 183 KYTTVAGIPISDLLPA-------ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEM 235
Query: 198 TYTLLNNTNKI 208
             +++ +  ++
Sbjct: 236 VESIVLDRKRV 246

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  S IVI+TAG+ ++ G +R  L+ +N  I K +  NI+K+S    +++VSNP+D
Sbjct: 63  DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I+T+V+W  SG PK RVIG    LD+ RFR  +A +LG+S + +   ++G HGD+ VPV 
Sbjct: 123 IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR--LKGYTSWAIGLSIASL 197
               VAG+ + ++ PA       E   KL     N   EI+    +G   +A   S+  +
Sbjct: 183 KYTTVAGIPISDLLPA-------ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEM 235
Query: 198 TYTLLNNTNKI 208
             +++ +  ++
Sbjct: 236 VESIVLDRKRV 246

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 16/202 (7%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           N  + + S +VI+T+GV ++EG SR+ L + N  I       I +      + +++NPVD
Sbjct: 68  NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVD 126
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TY +   S F +N+V G GT+LDS+RF+V +A+  G+  + V   IIGEHGDS VP+ 
Sbjct: 127 VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLH-----TDVVNSAYEIIRLKGYTSWAIGLSI 194
           S  ++ G+ +++           E F +L       DV     +IIRLKG + +    +I
Sbjct: 187 SATSIGGIPIQKF----------ERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAI 236
Query: 195 ASLTYTLLNNTNKIHAISTLIQ 216
            ++   ++NN  ++  +S  + 
Sbjct: 237 LNVVRCIVNNEKRLLTLSAYVD 258

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+L +GS I++VTAG+ ++ G +RL L  +N  I K I   IV+ +P+  +L+V+NP+D
Sbjct: 63  DYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TY+ WK SG P+N V G G  LDS R +  L      +    +  IIGEHGDS     
Sbjct: 123 VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--IIGEHGDSMFVAK 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S  +  G    EV+           +  +  DV   A E+I+ KG T +   ++I  +  
Sbjct: 181 SLADFDG----EVD-----------WEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVK 225
Query: 200 TLLNNTNKIHAISTLIQ 216
            ++ +T +I   S ++Q
Sbjct: 226 AVVEDTGEIIPTSMILQ 242

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +++     L  SNPVD+
Sbjct: 65  YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 124
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           L    ++     + +VIG G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+S
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 184
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
            V V G      +P     GD +E  +L  D+  SA ++I  KG T W     +A +   
Sbjct: 185 KVRVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 235
Query: 201 LLNNTNKI 208
           +L++T ++
Sbjct: 236 ILHDTGRV 243

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 106/188 (56%), Gaps = 9/188 (4%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +++     L  SNPVD+
Sbjct: 65  YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 124
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           L    ++     + +VIG G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+S
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 184
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
            V+V G      +P     GD +E  +L  D+  SA ++I  KG T W     +A +   
Sbjct: 185 KVSVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 235
Query: 201 LLNNTNKI 208
           +L++T ++
Sbjct: 236 ILHDTGEV 243

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 86/133 (64%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  S IV++TAG+ ++ G +R  L+  N  I + +   I+++S    +++VSNP+D
Sbjct: 63  DYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLD 122
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I+T+V+W+ SG PK RVIG    LDS RFR  +A +LG+S + V   ++G HGD+ VPV 
Sbjct: 123 IMTHVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREV 152
               VAG+ + ++
Sbjct: 183 KYTTVAGIPVADL 195

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 106/188 (56%), Gaps = 9/188 (4%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +++     L  SNPVD+
Sbjct: 66  YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 125
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           L    ++     + +VIG G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+S
Sbjct: 126 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 185
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
            V+V G      +P     GD +E  +L  D+  SA ++I  KG T W     +A +   
Sbjct: 186 KVSVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 236
Query: 201 LLNNTNKI 208
           +L++T ++
Sbjct: 237 ILHDTGEV 244

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +++     L  SNPVD+
Sbjct: 65  YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 124
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           L    ++     + +VIG G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+S
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 184
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
            V V G      +P     GD +E  +L  D+  SA ++I  KG T W     +A +   
Sbjct: 185 KVRVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 235
Query: 201 LLNNTNKI 208
           +L++T ++
Sbjct: 236 ILHDTGEV 243

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +++     L  SNPVD+
Sbjct: 66  YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 125
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           L    ++     + +VIG G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+S
Sbjct: 126 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 185
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
            V V G      +P     GD +E  +L  D+  SA ++I  KG T W     +A +   
Sbjct: 186 KVRVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 236
Query: 201 LLNNTNKI 208
           +L++T ++
Sbjct: 237 ILHDTGEV 244

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y    GS IV+VTAG+ ++ G +R  L+E N N    +   I  Y+    ++I +NPVD
Sbjct: 61  SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TYV +K +GFP+ RVIG    LDS R    ++QKLG+S +SV   ++G HG    PV 
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS-WAIGLSIASLT 198
              +V GV L  +          EE  ++ ++ VN+  +I  L+GY+S +     +    
Sbjct: 181 RLSSVGGVPLEHLM-------SKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 199 YTLLNNTNKIHAISTLIQ 216
             +  ++ +I+  S  +Q
Sbjct: 234 EAIKRDSKRIYPYSLYLQ 251

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 81/128 (63%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y  +E S + I+TAG+ +  G SR  L+ +N  I  G+    V+ SP  T+++V+NP+D
Sbjct: 63  DYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD 122
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TYV+++ SGFP NRV+G    LD+ RFR  +A++L +S   V   ++G HGD+ VP+ 
Sbjct: 123 VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPLP 182
Query: 140 SGVNVAGV 147
               V G+
Sbjct: 183 RYTTVGGI 190

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 5/146 (3%)
Query: 7   HSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS 66
            + F G N     +YA  EG+ +VIVTAGV ++ G SR  L+  N+ + + +   I KY+
Sbjct: 61  DAKFTGAN-----DYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA 115
Query: 67  PQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF 126
           P+  ++ ++NP+D + +   K SG P ++V+G    LDS RFR  L+++  +S E V  F
Sbjct: 116 PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVF 175
Query: 127 IIGEHGDSSVPVWSGVNVAGVNLREV 152
           ++G HGDS VP+     VAG+ L ++
Sbjct: 176 VLGGHGDSMVPLARYSTVAGIPLPDL 201

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 81/132 (61%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S +++VT+G  ++ G SR  L++ N +I +  I      SP   +++V+NP+D
Sbjct: 64  NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TY++ ++SGFPK RVIG    LD+ R+R  +A + G+S E V   ++G HGD  VP+ 
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
               ++G+ + E
Sbjct: 184 RFSTISGIPVSE 195

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 81/132 (61%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S +++VT+G  ++ G SR  L++ N +I +  I      SP   +++V+NP+D
Sbjct: 64  NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TY++ ++SGFPK RVIG    LD+ R+R  +A + G+S E V   ++G HGD  VP+ 
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
               ++G+ + E
Sbjct: 184 RFSCISGIPVSE 195

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 81/132 (61%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S +++VT+G  ++ G SR  L++ N +I +  I      SP   +++V+NP+D
Sbjct: 64  NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TY++ ++SGFPK RVIG    LD+ R+R  +A + G+S + V   ++G HGD  VP+ 
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
               ++G+ + E
Sbjct: 184 RFSTISGIPVSE 195

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 81/132 (61%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S +++VT+G  ++ G SR  L++ N +I +  I      SP   +++V+NP+D
Sbjct: 64  NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TY++ ++SGFPK RVIG    LD+ R+R  +A + G+S + V   ++G HGD  VP+ 
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
               ++G+ + E
Sbjct: 184 RFSTISGIPVSE 195

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 13  VNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSP 67
           V+V +   Y    GS +VI+TAG+ +  G+S     R  L+  N  I + +   + KY P
Sbjct: 63  VSVTSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCP 122
Query: 68  QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFI 127
              +++V+NP+D +     + SG PKN V G    LDS RFR  +A +L +SP  +   +
Sbjct: 123 LAFVIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 128 IGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYT 186
           IG HGD  +P+   V V G  LRE +     TE    +  ++      +  EI+RL G  
Sbjct: 183 IGTHGDHMLPLARYVTVNGFPLREFIKKGKMTEA---KLAEIVERTKKAGGEIVRLLGQG 239
Query: 187 S--WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           S  +A  LS  ++    L +  ++   S   Q
Sbjct: 240 SAYYAPALSAITMAQAFLKDEKRVLPCSVYCQ 271

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 13  VNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSP 67
           V+V +   Y    GS +VI+TAG+ +  G+S     R  L+  N  I + +   + KY P
Sbjct: 63  VSVTSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCP 122
Query: 68  QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFI 127
              +++V+NP+D +     + SG PKN V G    LDS RFR  +A +L +SP  +   +
Sbjct: 123 LAFVIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 128 IGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYT 186
           IG HGD  +P+   V V G  LRE +     TE    +  ++      +  EI+RL G  
Sbjct: 183 IGTHGDHMLPLARYVTVNGFPLREFIKKGKMTEA---KLAEIVERTKKAGGEIVRLLGQG 239
Query: 187 S--WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           S  +A  LS  ++    L +  ++   S   Q
Sbjct: 240 SAYYAPALSAITMAQAFLKDEKRVLPCSVYCQ 271

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 9/197 (4%)
Query: 26  GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           GS +VIVTAG  +  G+S     RL L+  N  I   I  +I K  P   +++V+NPVD+
Sbjct: 72  GSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+  V +  
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
            + V G+ L+E +N  + ++ + E    +    VN+A EI+ L      A   +I  +  
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
           + L +  K+   STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 77/133 (57%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y   E S +VIVTAGV ++ G SR  L+  N+ + + +   I    P   ++ ++NP+D
Sbjct: 67  DYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITNPLD 126
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I      K SG P N+++G    LDS RFR  LA +L +S + V  ++ G HGD+ VP+ 
Sbjct: 127 IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGHGDTXVPLT 186
Query: 140 SGVNVAGVNLREV 152
              NVAGV+L ++
Sbjct: 187 KXSNVAGVSLEQL 199

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NY   + S +VI+TAGV ++   +R  L+  N  I   +  N+ KY P   ++ ++NP+D
Sbjct: 76  NYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD 135
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            + Y   + SG P N+V G    LDS RFR  L++ LG+ P  V   ++G HGD  +P+ 
Sbjct: 136 AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPLT 195
Query: 140 SGVNVAGVNLRE 151
           S V + G+ L +
Sbjct: 196 SSVTIGGILLSD 207

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA   GS +VI+TA +  R  + R  L+  N  I   +   + KY P   ++ ++NP+D
Sbjct: 66  DYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++     K+SG P N+V G    LDS RFR  +AQ  G++   V   +IG HGD  VP  
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPAT 185
Query: 140 SGVNVAGVNL 149
           S V+V GV L
Sbjct: 186 SSVSVGGVPL 195

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%)
Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA   GS +VI+TA +  R  + R  L+  N  I   +   + KY P   ++ ++NP+D
Sbjct: 66  DYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125
Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++     K+SG P N+V G    LDS RFR  +AQ  G++   V   +IG HGD  VP  
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPAT 185
Query: 140 SGVNVAGVNL 149
           S V+V GV L
Sbjct: 186 SSVSVGGVPL 195

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 14  NVLTRLNY---ALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKY 65
           NV  R  Y   A   G+  VIVTAG+ +  G+     SR  L+  N  I + I  NI KY
Sbjct: 63  NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY 122
Query: 66  SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
            P+  +++V+NP+D +  V  + SG P N + G    LDS RFR  +A  L +SP  V  
Sbjct: 123 CPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA 182
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +IG HGD  VP+   + V G  +++ +   + TE   EE  + HT V  S  EI+R  G
Sbjct: 183 TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAE-HTKV--SGGEIVRFLG 239

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 14  NVLTRLNY---ALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKY 65
           NV  R  Y   A   G+  VIVTAG+ +  G+     SR  L+  N  I + I  NI KY
Sbjct: 61  NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY 120
Query: 66  SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
            P+  +++V+NP+D +  V  + SG P N + G    LDS RFR  +A  L +SP  V  
Sbjct: 121 CPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA 180
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +IG HGD  VP+   + V G  +++ +   + TE   EE  + HT V  S  EI+R  G
Sbjct: 181 TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAE-HTKV--SGGEIVRFLG 237

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26  GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           GS +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V+NPVD+
Sbjct: 72  GSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+  V +  
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
            + V G+ L+E +N  + ++ + E    +    VN+A EI+ L      A   +I  +  
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
           + L +  K+   STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 14  NVLTRLNY---ALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKY 65
           NV  R  Y   A   G+  VIVTAG+ +  G+     SR  L+  N  I + I  NI KY
Sbjct: 63  NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY 122
Query: 66  SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
            P+  +++V+NP+D +  V  + SG P N + G    LDS RFR  +A  L +SP  V  
Sbjct: 123 CPKTFIIVVTNPLDCMVKVMXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA 182
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +IG HGD  VP+   + V G  +++ +   + TE   EE  + HT V  S  EI+R  G
Sbjct: 183 TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAE-HTKV--SGGEIVRFLG 239

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26  GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V+NPVD+
Sbjct: 71  GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 130
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+  V +  
Sbjct: 131 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 190
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
            + V G+ L+E +N  + ++ + E    +    VN+A EI+ L      A   +I  +  
Sbjct: 191 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 247
Query: 200 TLLNNTNKIHAISTLIQ 216
           + L +  K+   STL++
Sbjct: 248 SYLKDLKKVLICSTLLE 264

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26  GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V+NPVD+
Sbjct: 71  GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 130
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+  V +  
Sbjct: 131 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 190
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
            + V G+ L+E +N  + ++ + E    +    VN+A EI+ L      A   +I  +  
Sbjct: 191 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 247
Query: 200 TLLNNTNKIHAISTLIQ 216
           + L +  K+   STL++
Sbjct: 248 SYLKDLKKVLICSTLLE 264

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26  GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V+NPVD+
Sbjct: 72  GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+  V +  
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
            + V G+ L+E +N  + ++ + E    +    VN+A EI+ L      A   +I  +  
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
           + L +  K+   STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%)
Query: 20  NYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIV 74
           +Y   +G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I    P   +++V
Sbjct: 65  SYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVV 124
Query: 75  SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
           +NPVD++  + ++ SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+ 
Sbjct: 125 TNPVDVMVQLLFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGNK 184
Query: 135 SVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLS 193
            V +   + V G+ L+E +N    T+   EE   +    VN+A EI+ L      A   +
Sbjct: 185 MVLLKRYITVGGIPLQEFINNKKITD---EEVEGIFDRTVNTALEIVNLLASPYVAPAAA 241
Query: 194 IASLTYTLLNNTNKIHAISTLIQ 216
           I  +  + L +  K+   STL++
Sbjct: 242 IIEMAESYLKDIKKVLVCSTLLE 264

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26  GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
           G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V+NPVD+
Sbjct: 72  GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
           +  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+  V +  
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
            + V G+ L+E +N  + ++ + E    +    VN+A EI+ L      A   +I  +  
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHAAPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
           + L +  K+   STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 9/202 (4%)
Query: 21  YALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
           Y   + + +VIVTAG  +  G+S     R  L+  N  I   I  +I    P   +++V+
Sbjct: 67  YDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVT 126
Query: 76  NPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
           NPVD++  +  + SG PKN+++G G  LD+ R +  ++QKL + P  V   I+G HG+  
Sbjct: 127 NPVDVMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKM 186
Query: 136 VPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSI 194
           V +   + V G+ L+E +N    T+   +E   +    +N+A EI+ L      A   +I
Sbjct: 187 VLLKRYITVGGIPLQEFINNKKITD---QELDAIFDRTINTALEIVNLHASPYVAPAAAI 243
Query: 195 ASLTYTLLNNTNKIHAISTLIQ 216
             +  + + +  K+   STL++
Sbjct: 244 IEMAESYIRDLRKVLICSTLLE 265

>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase From Lactobacillus Confusus At 2.2 Angstroms Resolution-an Example Of Strong Asymmetry Between Subunits Length = 309

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 43  SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTN 102
            R + ++   ++ + +  N+ +      L+++SNPVD++T +   ++GFP ++VIG+GT 
Sbjct: 90  DRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTL 149
Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
           LD+ R +  + +   L P SV G+ +GEHG+S    WS V V G  +  +  A    GD 
Sbjct: 150 LDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADA----GDI 205
Query: 163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTN 206
            +   +  +     + ++  KGYTS+ +  S   +   ++ + +
Sbjct: 206 -DLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAH 248

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7   HSSFKGVNVL--TRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
           H  F+G+N+   + +  AL++ ++ ++ + G  ++EG +R  L++ N  I   +  +I  
Sbjct: 56  HCGFEGLNLTFTSDIKEALTD-AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKS 114
Query: 65  YSPQCT-LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
           Y P C  ++I+ NP DI   V+   SG   ++V  +   LDS R +  LA+  G+    V
Sbjct: 115 YCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVT-TLAGLDSTRLQSELAKHFGIKQSLV 173
Query: 124 YGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT-EEFGKLHTDVVNSAYEIIR 181
                 G HG+      S   V G  L ++   IGT+  T E++ +L   VV     II+
Sbjct: 174 TNTRTYGGHGEQMAVFASTAKVNGTPLTDL---IGTDKLTNEQWAELKQRVVKGGANIIK 230
Query: 182 LKGYTSW 188
           L+G +S+
Sbjct: 231 LRGRSSF 237

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           EG+ +V+++AGVR++ G  R  L   N  I K ++  + K  P+  + I++NPV+    I
Sbjct: 68  EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI 127
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   + KN++ G  T LD +R    +A+  G  P  V   +IG H G + +P+ 
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
           S   V GV+  E           +E   L   + N+  E++  K   G  + ++G + A 
Sbjct: 187 S--QVPGVSFTE-----------QEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAAR 233
Query: 197 LTYTLL 202
              +L+
Sbjct: 234 FGLSLV 239

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           EG+ +V+++AGV ++ G  R  L   N  I K ++  + K  P+  + I++NPV+    I
Sbjct: 68  EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI 127
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   + KN++ G  T LD +R    +A+  G  P  V   +IG H G + +P+ 
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
           S   V GV+  E           +E   L   + N+  E++  K   G  + ++G + A 
Sbjct: 187 S--QVPGVSFTE-----------QEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAAR 233
Query: 197 LTYTLL 202
              +L+
Sbjct: 234 FGLSLV 239

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 22/186 (11%)
Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           EG+ +V+++AGV ++ G  R  L   N  I K ++  + K  P+  + I++NPV+    I
Sbjct: 68  EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI 127
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   + KN++ G  T LD +     +A+  G  P  V   +IG H G + +P+ 
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
           S   V GV+  E           +E   L   + N+  E++  K   G  + ++G + A 
Sbjct: 187 S--QVPGVSFTE-----------QEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAAR 233
Query: 197 LTYTLL 202
              +L+
Sbjct: 234 FGLSLV 239

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 18  RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77
           +L  AL+ G  ++IV AGV ++ G +R  L + N  I K +   I K  P+  + ++SNP
Sbjct: 69  QLEAALT-GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 127
Query: 78  VD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
           V+    I   V  K   +   R++G  T LD +R    +A+ LGL P  V   ++G H  
Sbjct: 128 VNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH-- 184
Query: 134 SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK-GYTSWAIGL 192
                 +GV +  + L +V P   +    EE   L   + N   E++  K G  S  + +
Sbjct: 185 ------AGVTILPL-LSQVKPP--SSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235
Query: 193 SIASLTYT 200
           + A++ + 
Sbjct: 236 AYAAVKFA 243

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 18  RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77
           +L  AL+ G  ++IV AGV ++ G +R  L + N  I K +   I K  P+  + ++SNP
Sbjct: 105 QLEAALT-GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 163
Query: 78  VD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
           V+    I   V  K   +   R++G  T LD +R    +A+ LGL P  V   ++G H  
Sbjct: 164 VNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH-- 220
Query: 134 SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK-GYTSWAIGL 192
                 +GV +  + L +V P   +    EE   L   + N   E++  K G  S  + +
Sbjct: 221 ------AGVTILPL-LSQVKPP--SSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271
Query: 193 SIASLTYT 200
           + A++ + 
Sbjct: 272 AYAAVKFA 279

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           EG+ +V+++AGV ++ G  R  L   N  I K +   I    P   + I++NPV+    I
Sbjct: 71  EGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPI 130
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   + K ++ G  T LD +R    +A+  G  P  V   +IG H G + +P+ 
Sbjct: 131 AAEVLKKAGVYDKRKLFGV-TTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLL 189
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
           S V              G E   EE   L   + N+  E++  K
Sbjct: 190 SQVE-------------GVEFSDEEIAALTKRIQNAGTEVVEAK 220

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           +G  +V++ AGV ++ G +R  L   N  I   +     ++ P   + I+SNPV+    I
Sbjct: 67  KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPI 126
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   +  N++ G  T LD +R    +A+  GL P  V   +IG H G + +P+ 
Sbjct: 127 TAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLI 185
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
           S          +  P +    D  +   L   +  +  E+++ K   G  + ++  + A 
Sbjct: 186 S----------QCTPKVDFPQD--QLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 233
Query: 197 LTYTLLNNTN 206
             ++L++  N
Sbjct: 234 FVFSLVDAMN 243

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 25  EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
           +G  +V++ AGV ++ G +R  L   N  I   +     ++ P+  + +++NPV+    I
Sbjct: 95  KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPI 154
Query: 81  LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
              V  K   +  N++ G  T LD +R    +A+  GL P  V   +IG H G + +P+ 
Sbjct: 155 TAEVFKKHGVYNPNKIFGV-TTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 213
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
           S          +  P +    D  +   L   +  +  E+++ K   G  + ++  + A 
Sbjct: 214 S----------QCTPKVDFPQD--QLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 261
Query: 197 LTYTLLNNTN 206
             ++L++  N
Sbjct: 262 FVFSLVDAMN 271

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 29  IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPVDILTYVSWK 87
           + I+   + +R+G  R  L++ NV IFK     + KY+ +   +++V NP +     + K
Sbjct: 83  VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK 142
Query: 88  LS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVA 145
            +   PK       T LD  R +  +A KLG++ + V   II G H  +  P    VN A
Sbjct: 143 SAPSIPKEN-FSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYP---DVNHA 198
Query: 146 GVNL--REVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS 187
            V L  +EV      + D+   G+  T V      +I+ +  +S
Sbjct: 199 KVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 29  IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPVDILTYVSWK 87
           + I+   + +R+G  R  L++ NV IFK     + KY+ +   +++V NP +     + K
Sbjct: 82  VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK 141
Query: 88  LS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVA 145
            +   PK       T LD  R +  +A KLG++ + V   II G H  +  P    VN A
Sbjct: 142 SAPSIPKEN-FSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYP---DVNHA 197
Query: 146 GVNL--REVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS 187
            V L  +EV      + D+   G+  T V      +I+ +  +S
Sbjct: 198 KVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	1e-112
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	1e-109
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	1e-108
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	1e-108
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	1e-107
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-106
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-106
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	1e-106
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	1e-105
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-105
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	1e-102
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	4e-99
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	9e-95
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	2e-92
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	2e-90
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	4e-88
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	6e-85
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	4e-83
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	5e-82
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	1e-80
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	1e-79
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-79
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	8e-79
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-78
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	3e-78
3tl2_A	315	Malate dehydrogenase; center for structural genomi	1e-77
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-76
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-47
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	2e-34
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	5e-34
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	2e-33
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	5e-30
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	1e-29
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	7e-29
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	1e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	2e-05
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	5e-05

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  322 bits (828), Expect = e-112
 Identities = 130/197 (65%), Positives = 170/197 (86%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+++  S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC LLIVSNPVD
Sbjct: 81  DYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD 140

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 200

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           SGVNVAGV+L+ +NP +GT+ D E++  +H  VV+SAYE+I+LKGYTSWAIGLS+A L  
Sbjct: 201 SGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 260

Query: 200 TLLNNTNKIHAISTLIQ 216
           +++ N  ++H IST+I+
Sbjct: 261 SIMKNLRRVHPISTMIK 277

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  314 bits (808), Expect = e-109
 Identities = 90/212 (42%), Positives = 131/212 (61%)

Query: 5   NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
           N    F G   L   +Y+  +   +++VTAG  ++ GE+RL L ++NV I K +  NI+K
Sbjct: 53  NHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMK 112

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
           Y     +L+VSNPVDI+TY+  K SG P  +VIGSGT LDS+RFR LL++KLG+  ++V+
Sbjct: 113 YYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172

Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
           G+IIGEHGDS +P+WS  ++AG N+ E           E+  K+  DV  +   II+ KG
Sbjct: 173 GYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKG 232

Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            T + I +SI ++  TLL N N I  + T+I 
Sbjct: 233 ATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 264

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  312 bits (802), Expect = e-108
 Identities = 83/212 (39%), Positives = 127/212 (59%)

Query: 5   NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
              + F     +   +Y   EG+R V++ AGV QR GE+RL L++RN  +F  ++P +++
Sbjct: 46  LHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLE 105

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
            +P+  LL+ +NPVD++T V++ LSG P  RV+GSGT LD+ RFR LLA+ L ++P+SV+
Sbjct: 106 AAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVH 165

Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +++GEHGDS V VWS   V GV L E   A G     E+  ++   V  +AY II  KG
Sbjct: 166 AYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG 225

Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            T + IG  +A L   +L +   ++ +S    
Sbjct: 226 ATYYGIGAGLARLVRAILTDEKGVYTVSAFTP 257

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  311 bits (800), Expect = e-108
 Identities = 83/198 (41%), Positives = 137/198 (69%), Gaps = 1/198 (0%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +  +   + +V++TAG RQ+ G+SRL LV   VNI K I+PN+VK +P    ++++NPVD
Sbjct: 69  DPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 128

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I T+V+ KL+G P+N++ GSGTNLDS R R L+AQ+ G++ ++V+ +I GEHGDS VP+W
Sbjct: 129 IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLW 188

Query: 140 SGVNVAGVNLREVNPAIGTEG-DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLT 198
               + GV + +  P  G +  D ++  ++H +V N+AY+II  KG T++AIG+S   + 
Sbjct: 189 ESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDII 248

Query: 199 YTLLNNTNKIHAISTLIQ 216
             +L++TN+I  +S++++
Sbjct: 249 EAVLHDTNRILPVSSMLK 266

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  310 bits (798), Expect = e-107
 Identities = 79/213 (37%), Positives = 128/213 (60%), Gaps = 2/213 (0%)

Query: 5   NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
           N    F    V      Y     + +V++ AG  Q+ GE+RL LV++N+ IF+ I+ +++
Sbjct: 52  NHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVM 111

Query: 64  KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
               Q   L+ +NPVDILTY +WK SG P  RVIGSGT LD+ RFR LL +   ++P++V
Sbjct: 112 ASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNV 171

Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
           + +IIGEHGD+ +PVWS   +  + +R++  + G E   ++  ++  +V ++AY+II  K
Sbjct: 172 HAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQ-KDLERIFVNVRDAAYQIIEKK 230

Query: 184 GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           G T + I + +A +T  +L+N N I  +S  + 
Sbjct: 231 GATYYGIAMGLARVTRAILHNENAILTVSAYLD 263

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  308 bits (792), Expect = e-106
 Identities = 92/213 (43%), Positives = 128/213 (60%), Gaps = 2/213 (0%)

Query: 5   NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
           N   +F    V T    Y   + + IV + AG  Q+ GE+RL LVE+N+ IFKGI+  ++
Sbjct: 51  NHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVM 110

Query: 64  KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
                   L+ +NPVDILTY +WK SG PK RVIGSGT LDS RFR +L++  G +P++V
Sbjct: 111 ASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNV 170

Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
              IIGEHGD+ +PVWS  NV GV + E+          EE  ++  DV N+AY II  K
Sbjct: 171 CAHIIGEHGDTELPVWSHANVGGVPVSELVEK-NDAYKQEELDQIVDDVKNAAYHIIEKK 229

Query: 184 GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           G T + + +S+A +T  +L+N N I  +ST + 
Sbjct: 230 GATYYGVAMSLARITKAILHNENSILTVSTYLD 262

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  308 bits (791), Expect = e-106
 Identities = 82/209 (39%), Positives = 125/209 (59%), Gaps = 1/209 (0%)

Query: 8   SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP 67
           + F     +   +YA  +GS +VIV AGV Q+ GE+RL L+ RN  + K I  N+ KY+P
Sbjct: 49  TPFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP 108

Query: 68  QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFI 127
              +++V+NPVD+LTY   K SG    +V GSGT LD+ R R L+AQ  G SP SV+ ++
Sbjct: 109 DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYV 168

Query: 128 IGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS 187
           IGEHGDS VPVWSG  + G+ L+ +   +  + D++           +AYEII  KG T 
Sbjct: 169 IGEHGDSEVPVWSGAMIGGIPLQNMCQ-VCQKCDSKILENFAEKTKRAAYEIIERKGATH 227

Query: 188 WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           +AI L++A +  ++  +  ++  +S  ++
Sbjct: 228 YAIALAVADIVESIFFDEKRVLTLSVYLE 256

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  306 bits (786), Expect = e-106
 Identities = 76/213 (35%), Positives = 122/213 (57%), Gaps = 3/213 (1%)

Query: 5   NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
              + +    V  +   Y+    + +V++ AG  Q+ GE+RL LV +N+ IFK I+  ++
Sbjct: 52  KHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVM 111

Query: 64  KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
                   L+ +NPVDIL Y +WK SG PK RVIGSGT LDS RFR+LL++   ++P SV
Sbjct: 112 ASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSV 171

Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
              IIGEHGD+ +PVWS  N+AG  L+ +           +  ++     ++AY+II+ K
Sbjct: 172 DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ--RPEGKAQIEQIFVQTRDAAYDIIQAK 229

Query: 184 GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           G T + + + +A +T  +  N + +  +S L++
Sbjct: 230 GATYYGVAMGLARITEAIFRNEDAVLTVSALLE 262

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  306 bits (786), Expect = e-105
 Identities = 85/212 (40%), Positives = 132/212 (62%), Gaps = 1/212 (0%)

Query: 5   NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
           ++   F     +    Y+ ++ + +V++TAG  Q+ GE+RL LV +N+ I K I+  IV 
Sbjct: 55  SNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD 114

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
                  L+ +NPVDILTY +WKLSGFPKNRV+GSGT+LD+ RFR  +A+ + +   SV+
Sbjct: 115 SGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVH 174

Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +I+GEHGD+  PVWS  N+ GV + E   A   E   ++  K+  DV ++AYEII+LKG
Sbjct: 175 AYIMGEHGDTEFPVWSHANIGGVTIAEWVKA-HPEIKEDKLVKMFEDVRDAAYEIIKLKG 233

Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            T + I  ++A ++  +LN+ N +  +S  + 
Sbjct: 234 ATFYGIATALARISKAILNDENAVLPLSVYMD 265

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  304 bits (781), Expect = e-105
 Identities = 80/212 (37%), Positives = 119/212 (56%), Gaps = 2/212 (0%)

Query: 5   NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
            D  +F     +    Y+  + + +V++TAG  Q+ GESRL LV +N+NI   I+  +V 
Sbjct: 51  EDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD 110

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
                  L+ +NPVDILTY +WK SGFPK RVIGSGT+LDS R RV L ++  + P SV 
Sbjct: 111 SGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVD 170

Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
            +I+GEHGDS    +S   +    +R+V    G     ++  KL   V N AY+II LKG
Sbjct: 171 AYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGV--SDDDLAKLEDGVRNKAYDIINLKG 228

Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            T + IG ++  ++  +L + N +  +   + 
Sbjct: 229 ATFYGIGTALMRISKAILRDENAVLPVGAYMD 260

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  298 bits (765), Expect = e-102
 Identities = 73/196 (37%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
            ++    +++VI+TAG  Q+ GESRL L+E+N +IF+ ++P I + +P   LL+ SNPVD
Sbjct: 61  GHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD 120

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           +LT ++ +L+  P   VIGSGT LDS RFR L+AQ  G+     +G+++GEHGDS V  W
Sbjct: 121 LLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAW 178

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S   VAG+ + +   A     + +   K+     N+A  II  K  T + IG ++A +T 
Sbjct: 179 SSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITE 238

Query: 200 TLLNNTNKIHAISTLI 215
            +L +   +  +S   
Sbjct: 239 AVLRDRRAVLTVSAPT 254

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  289 bits (743), Expect = 2e-99
 Identities = 60/197 (30%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
            Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +++     L  SNPVD
Sbjct: 64  GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           +L    ++     + +VIG G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVF 183

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S V+V G +              +E  +L  D+  SA ++I  KG T W     +A +  
Sbjct: 184 SKVSVDGTDPEF---------SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVE 234

Query: 200 TLLNNTNKIHAISTLIQ 216
            +L++T ++   S  ++
Sbjct: 235 AILHDTGEVLPASVKLE 251

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  289 bits (742), Expect = 4e-99
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 10/216 (4%)

Query: 5   NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGV----RQREGESRLSLVERNVNIFKGII 59
            D  +    +    +N +A    + +VI T G     +      R + ++   ++ + + 
Sbjct: 47  QDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVG 106

Query: 60  PNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            N+ +      L+++SNPVD++T +   ++GFP ++VIG+GT LD+ R +  + +   L 
Sbjct: 107 TNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLD 166

Query: 120 PESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI 179
           P SV G+ +GEHG+S    WS V V G  +  +      +    +   +  +     + +
Sbjct: 167 PRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTL-----ADAGDIDLAAIEEEARKGGFTV 221

Query: 180 IRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI 215
           +  KGYTS+ +  S   +   ++ + +    +S   
Sbjct: 222 LNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRR 257

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  277 bits (712), Expect = 9e-95
 Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 19/211 (9%)

Query: 6   DHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY 65
           D   F   NV    + + S  S++VI T        +S L +V+ NV++F+ ++P +  Y
Sbjct: 57  DLEIFNLPNVEISKDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHY 115

Query: 66  SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
           S    LL+ S PV+I+TYV+WKLS FP NRVIG G NLDS R + ++   L         
Sbjct: 116 SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEV 175

Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGY 185
           ++IGE G+  V  WSG      +                       + N A E++R+KG 
Sbjct: 176 WVIGEQGEDKVLTWSGQEEVVSH------------------TSQVQLSNRAMELLRVKGQ 217

Query: 186 TSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            SW++GLS+A +  +++NN  K+H++S L +
Sbjct: 218 RSWSVGLSVADMVDSIVNNKKKVHSVSALAK 248

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  271 bits (696), Expect = 2e-92
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 17/197 (8%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+L +GS I++VTAG+ ++ G +RL L  +N  I K I   IV+ +P+  +L+V+NP+D
Sbjct: 63  DYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TY+ WK SG P+N V G G  LDS R +  L      +      +IIGEHGDS     
Sbjct: 123 VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRR--AWIIGEHGDSMFVAK 180

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S  +  G    E                +  DV   A E+I+ KG T +   ++I  +  
Sbjct: 181 SLADFDGEVDWE---------------AVENDVRFVAAEVIKRKGATIFGPAVAIYRMVK 225

Query: 200 TLLNNTNKIHAISTLIQ 216
            ++ +T +I   S ++Q
Sbjct: 226 AVVEDTGEIIPTSMILQ 242

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  268 bits (686), Expect = 2e-90
 Identities = 96/214 (44%), Positives = 132/214 (61%), Gaps = 38/214 (17%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C   +      
Sbjct: 83  DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT 142

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
                 WKLSG P +R+IGSG NLDS RFR L+ ++LG+    V G++IG+HGDS   VW
Sbjct: 143 DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQHGDSVPSVW 202

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGL------- 192
           SG+  A +                     H DVV+SAYE+I+LKGYTSWAIGL       
Sbjct: 203 SGMWDAKL---------------------HKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241

Query: 193 ----------SIASLTYTLLNNTNKIHAISTLIQ 216
                     S+A L  T++ +  ++H +ST+++
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVK 275

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  261 bits (669), Expect = 4e-88
 Identities = 66/199 (33%), Positives = 112/199 (56%), Gaps = 9/199 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  S IVI+TAG+ ++ G +R  L+ +N  I K +  NI+K+S    +++VSNP+D
Sbjct: 63  DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I+T+V+W  SG PK RVIG    LD+ RFR  +A +LG+S + +   ++G HGD+ VPV 
Sbjct: 123 IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVV 182

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
               VAG+ + ++ PA       E   KL     N   EI+    +G   +A   S+  +
Sbjct: 183 KYTTVAGIPISDLLPA-------ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEM 235

Query: 198 TYTLLNNTNKIHAISTLIQ 216
             +++ +  ++   +  ++
Sbjct: 236 VESIVLDRKRVLPCAVGLE 254

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  253 bits (648), Expect = 6e-85
 Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 8/198 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y  +E S + I+TAG+ +  G SR  L+ +N  I  G+    V+ SP  T+++V+NP+D
Sbjct: 63  DYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD 122

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TYV+++ SGFP NRV+G    LD+ RFR  +A++L +S   V   ++G HGD+ VP+ 
Sbjct: 123 VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPLP 182

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLT 198
               V G+ + ++              ++      +  EI+ L G ++W A G + A +T
Sbjct: 183 RYTTVGGIPVPQLIDD-------ARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMT 235

Query: 199 YTLLNNTNKIHAISTLIQ 216
             +L +  +I   +    
Sbjct: 236 EAILKDNKRILPCAAYCD 253

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  248 bits (636), Expect = 4e-83
 Identities = 61/197 (30%), Positives = 108/197 (54%), Gaps = 6/197 (3%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           N  + + S +VI+T+GV ++EG SR+ L + N  I       I +      + +++NPVD
Sbjct: 68  NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFVITNPVD 126

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++TY +   S F +N+V G GT+LDS+RF+V +A+  G+  + V   IIGEHGDS VP+ 
Sbjct: 127 VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLL 186

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
           S  ++ G+ +++               ++  DV     +IIRLKG + +    +I ++  
Sbjct: 187 SATSIGGIPIQKF-----ERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVR 241

Query: 200 TLLNNTNKIHAISTLIQ 216
            ++NN  ++  +S  + 
Sbjct: 242 CIVNNEKRLLTLSAYVD 258

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  245 bits (629), Expect = 5e-82
 Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y    GS IV+VTAG+ ++ G +R  L+E N N    +   I  Y+    ++I +NPVD
Sbjct: 61  SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TYV +K +GFP+ RVIG    LDS R    ++QKLG+S +SV   ++G HG    PV 
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLT 198
              +V GV L  +          EE  ++ ++ VN+  +I  L+GY+S       +    
Sbjct: 181 RLSSVGGVPLEHLMSK-------EEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233

Query: 199 YTLLNNTNKIHAISTLIQ 216
             +  ++ +I+  S  +Q
Sbjct: 234 EAIKRDSKRIYPYSLYLQ 251

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  242 bits (621), Expect = 1e-80
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 4/199 (2%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA   GS +VI+TA +  R  + R  L+  N  I   +   + KY P   ++ ++NP+D
Sbjct: 66  DYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           ++     K+SG P N+V G    LDS RFR  +AQ  G++   V   +IG HGD  VP  
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPAT 185

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
           S V+V GV L             E+  ++      +  E+      G   +A   +   +
Sbjct: 186 SSVSVGGVPLSSFIKQGLI--TQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAAAVKM 243

Query: 198 TYTLLNNTNKIHAISTLIQ 216
               L +   +   S    
Sbjct: 244 AEAYLKDKKAVVPCSAFCS 262

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  240 bits (614), Expect = 1e-79
 Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 4/199 (2%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA  EG+ +VIVTAGV ++ G SR  L+  N+ + + +   I KY+P+  ++ ++NP+D
Sbjct: 69  DYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD 128

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            + +   K SG P ++V+G    LDS RFR  L+++  +S E V  F++G HGDS VP+ 
Sbjct: 129 AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVPLA 188

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
               VAG+ L ++          ++  K+     +   EI+ L   G   +A   S   +
Sbjct: 189 RYSTVAGIPLPDL--VKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAASAIQM 246

Query: 198 TYTLLNNTNKIHAISTLIQ 216
             + L +  ++  ++  + 
Sbjct: 247 AESYLKDKKRVLPVAAQLS 265

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  239 bits (613), Expect = 2e-79
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 4/199 (2%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NY   + S +VI+TAGV ++   +R  L+  N  I   +  N+ KY P   ++ ++NP+D
Sbjct: 76  NYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD 135

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            + Y   + SG P N+V G    LDS RFR  L++ LG+ P  V   ++G HGD  +P+ 
Sbjct: 136 AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPLT 195

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
           S V + G+ L +            +  ++         EI+ L   G   +A   S  ++
Sbjct: 196 SSVTIGGILLSDFVEQGKI--THSQINEIIKKTAFGGGEIVELLKTGSAFYAPAASAVAM 253

Query: 198 TYTLLNNTNKIHAISTLIQ 216
               L ++  +   ST + 
Sbjct: 254 AQAYLKDSKSVLVCSTYLT 272

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  237 bits (608), Expect = 8e-79
 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 4/199 (2%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y   E S +VIVTAGV ++ G SR  L+  N+ + + +   I    P   ++ ++NP+D
Sbjct: 67  DYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD 126

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
           I+  +  K SG P N+++G    LDS RFR  LA +L +S + V  +++G HGD+ VP+ 
Sbjct: 127 IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVPLT 186

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
              NVAGV+L ++          E    + +   +   EI+ L   G   +A   +   +
Sbjct: 187 KMSNVAGVSLEQLVKEGKL--KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAGIQM 244

Query: 198 TYTLLNNTNKIHAISTLIQ 216
             + L +   I   +  ++
Sbjct: 245 AESFLKDKKMILPCAAKVK 263

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  237 bits (606), Expect = 1e-78
 Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S +++VT+G  ++ G SR  L++ N +I +  I      SP   +++V+NP+D
Sbjct: 64  NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TY++ ++SGFPK RVIG    LD+ R+R  +A + G+S E V   ++G HGD  VP+ 
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLP 183

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
               ++G+ + E           +   ++         EI+ L   G   +A   + A +
Sbjct: 184 RFSCISGIPVSEFIAP-------DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQM 236

Query: 198 TYTLLNNTNKIHAISTLIQ 216
              +L +  ++  ++  + 
Sbjct: 237 VEAVLKDKKRVMPVAAYLT 255

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  236 bits (605), Expect = 3e-78
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 20  NYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIV 74
            Y    G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V
Sbjct: 66  TYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 125

Query: 75  SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
           +NPVD++  +  + SG PKN++IG G  LD+ R +  ++QKL + P  V   I+G HG+ 
Sbjct: 126 TNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNK 185

Query: 135 SVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSI 194
            V +   + V G+ L+E            E   +    VN+A EI+ L      A   +I
Sbjct: 186 MVLLKRYITVGGIPLQEFINNKLI--SDAELEAIFDRTVNTALEIVNLHASPYVAPAAAI 243

Query: 195 ASLTYTLLNNTNKIHAISTLIQ 216
             +  + L +  K+   STL++
Sbjct: 244 IEMAESYLKDLKKVLICSTLLE 265

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  235 bits (601), Expect = 1e-77
 Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  S +V++TAG+ ++ G SR  LV  N  I K I  +I K+SP   +++++NPVD
Sbjct: 72  DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD 131

Query: 80  ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
            +TY  +K +GFPK RVIG    LD+ RFR  +AQ+L LS + + GF++G HGD  VP+ 
Sbjct: 132 AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGDDMVPLV 191

Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
                 G+ L  + P        E    +         EI+ L   G   +A   S+  +
Sbjct: 192 RYSYAGGIPLETLIPK-------ERLEAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEM 244

Query: 198 TYTLLNNTNKIHAISTLIQ 216
           T  +L +  ++      ++
Sbjct: 245 TEAILKDQRRVLPAIAYLE 263

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  232 bits (594), Expect = 1e-76
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 9/203 (4%)

Query: 21  YALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
            A   G+  VIVTAG+ +  G+     SR  L+  N  I + I  NI KY P+  +++V+
Sbjct: 73  EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132

Query: 76  NPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
           NP+D +  V  + SG P N + G    LDS RFR  +A  L +SP  V   +IG HGD  
Sbjct: 133 NPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCM 192

Query: 136 VPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLS 193
           VP+   + V G  +++           ++  ++      S  EI+R   +G   +A   S
Sbjct: 193 VPLVRYITVNGYPIQKFIKDGVV--TEKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAAS 250

Query: 194 IASLTYTLLNNTNKIHAISTLIQ 216
             ++  + LN+  ++   S    
Sbjct: 251 AVAMATSFLNDEKRVIPCSVYCN 273

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  157 bits (399), Expect = 3e-47
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 7/207 (3%)

Query: 6   DHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
            H  F+G+N+  T         ++ ++ + G  ++EG +R  L++ N  I   +  +I  
Sbjct: 55  RHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKS 114

Query: 65  YSPQCTLLIV-SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
           Y P C  +I+  NP DI   V+   SG   ++V      LDS R +  LA+  G+    V
Sbjct: 115 YCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLV 173

Query: 124 YG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL 182
                 G HG+      S   V G  L ++          E++ +L   VV     II+L
Sbjct: 174 TNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKL--TNEQWAELKQRVVKGGANIIKL 231

Query: 183 KGYTSW-AIGLSIASLTYTLLNNTNKI 208
           +G +S+ +       +    +      
Sbjct: 232 RGRSSFQSPSYVSIEMIRAAMGGEAFR 258

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  123 bits (312), Expect = 2e-34
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
             A   G  ++IV AGV ++ G +R  L + N  I K +   I K  P+  + ++SNPV+
Sbjct: 70  LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVN 129

Query: 80  ILTYVS----WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDS 134
               ++     K   +   R++G    LD +R    +A+ LGL P  V   ++G H G +
Sbjct: 130 STVPIAAEVFKKAGTYDPKRLLGVTM-LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 188

Query: 135 SVPVWSGVNVAG 146
            +P+ S V    
Sbjct: 189 ILPLLSQVKPPS 200

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  122 bits (308), Expect = 5e-34
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
                EG+ +V+++AGV ++ G  R  L   N  I K ++  + K  P+  + I++NPV+
Sbjct: 63  ATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVN 122

Query: 80  ILTYVSW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
               ++     K   + KN++ G  T LD +R    +A+  G  P  V   +IG H   +
Sbjct: 123 TTVAIAAEVLKKAGVYDKNKLFGVTT-LDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVT 181

Query: 136 -VPVWSGVNVAGVNLRE 151
            +P+ S   V GV+  E
Sbjct: 182 ILPLLS--QVPGVSFTE 196

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  120 bits (304), Expect = 2e-33
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
                +G  +V++ AGV ++ G +R  L   N  I   +     ++ P   + I+SNPV+
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 80  ILTYVSW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDS 134
               ++     K   +  N++ G  T LD +R    +A+  GL P  V   +IG H G +
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANAFVAELKGLDPARVSVPVIGGHAGKT 180

Query: 135 SVPVWSGVNVAG 146
            +P+ S      
Sbjct: 181 IIPLISQCTPKV 192

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  112 bits (282), Expect = 5e-30
 Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 22/191 (11%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
             T +   +FK  +                ++     ++ G  R  L++ N  IF     
Sbjct: 69  EATDDPKVAFKDADY--------------ALLVGAAPRKAGMERRDLLQVNGKIFTEQGR 114

Query: 61  NIVKYSPQ-CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            + + + +   +L+V NP +    +++K +     R   + T LD  R +  LA+K G  
Sbjct: 115 ALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTG 174

Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
            + +    + G H  +  P      V G    E+   +  E   + F  + T V      
Sbjct: 175 VDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALEL---VDMEWYEKVF--IPT-VAQRGAA 228

Query: 179 IIRLKGYTSWA 189
           II+ +G +S A
Sbjct: 229 IIQARGASSAA 239

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  111 bits (279), Expect = 1e-29
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 21/191 (10%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
               +  ++FK  +V               ++     +  G  R  L+E N  IF     
Sbjct: 72  TAHADPMTAFKDADV--------------ALLVGARPRGPGMERKDLLEANAQIFTVQGK 117

Query: 61  NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            I    S    +L+V NP +   Y++ K +     +   +   LD  R    +A K G  
Sbjct: 118 AIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177

Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
             S+    + G H  +    +    + G +++++        D          V      
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMIND-----DAWNRDTFLPTVGKRGAA 232

Query: 179 IIRLKGYTSWA 189
           II  +G +S A
Sbjct: 233 IIDARGVSSAA 243

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  109 bits (274), Expect = 7e-29
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 20/198 (10%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           + T  +  +FK ++V               I+   + +R+G  R  L++ NV IFK    
Sbjct: 68  IATDKEEIAFKDLDV--------------AILVGSMPRRDGMERKDLLKANVKIFKCQGA 113

Query: 61  NIVKYSPQ-CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            + KY+ +   +++V NP +     + K +           T LD  R +  +A KLG++
Sbjct: 114 ALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVT 173

Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
            + V   II G H  +  P  +   V              + D+   G+  T V      
Sbjct: 174 SDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD-DSWLKGEFITTVQQRGAA 232

Query: 179 IIRLKGYTSWAIGLSIAS 196
           +I+ +  +S     S A 
Sbjct: 233 VIKARKLSSAM---SAAK 247

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  109 bits (273), Expect = 1e-28
 Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 21/191 (10%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
            +  + +  F+ V+                ++     +  G  R +L++ N  IF     
Sbjct: 97  SIGIDPYEVFEDVDW--------------ALLIGAKPRGPGMERAALLDINGQIFADQGK 142

Query: 61  NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
            +    S    +L+V NP +    +  K +     +   + T LD  R +  LA K G+ 
Sbjct: 143 ALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVF 202

Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
            + V    I G H  + VP +    + G  ++EV   I      EE  +    V      
Sbjct: 203 YDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEV---IKRTKWLEE--EFTITVQKRGGA 257

Query: 179 IIRLKGYTSWA 189
           +I+  G +S A
Sbjct: 258 LIQKWGRSSAA 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-07
 Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 67/234 (28%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
           +LTT        ++  T  + +L   S        +   E     SL+ + ++     +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSM------TLTPDEV---KSLLLKYLDCRPQDLP 319

Query: 61  N-IVKYSPQCTLLI---VSNPVDILTYVSWKLSGFPK-NRVIGSG-TNLDSMRFRVLLAQ 114
             ++  +P+   +I   + + +       WK     K   +I S    L+   +R +   
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMF-D 376

Query: 115 KLGLSPESVYGFIIGEHGDSSVP------VWSGVNVAGV----------NLREVNPAIGT 158
           +L + P S +           +P      +W  V  + V          +L E  P   T
Sbjct: 377 RLSVFPPSAH-----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 159 ----------EGDTEEFGKLHTDVVNSAYEIIR-----------LKGYTSWAIG 191
                     +   E    LH  +V+  Y I +           L  Y    IG
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIG 478

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 19/181 (10%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLV--------ERNVNIFKGIIPNIVKYSPQCTL 71
            +   E  R +    G  +       ++V           +  F  I   I K SP+   
Sbjct: 89  GHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWY 148

Query: 72  LIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-E 130
           L  +NP+   T     ++     + +G       +     + +KLGL  E V   + G  
Sbjct: 149 LQAANPIFEGT---TLVTRTVPIKAVGFCHGHYGVME---IVEKLGLEEEKVDWQVAGVN 202

Query: 131 HGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAI 190
           HG       +     G N   +      E   +   +   +   S   I   + Y    I
Sbjct: 203 HGI----WLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPI 258

Query: 191 G 191
           G
Sbjct: 259 G 259

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 35  GVRQRE--GESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92
           GV  +E  G   L    R + +   II ++ +  P   L+  +NP  ++T    +     
Sbjct: 110 GVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY--TK 167

Query: 93  KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNLRE 151
           + +V+G       MR    +A+ LG+  + V+    G  H          V + GV + E
Sbjct: 168 QEKVVGLCNVPIGMRMG--VAKLLGVDADRVHIDFAGLNHMV----FGLHVYLDGVEVTE 221

Query: 152 VNPAIGTEGDTEEF 165
               +    D    
Sbjct: 222 KVIDLVAHPDRSGV 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.93
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.91
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.86
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	85.35
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	85.02
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	82.28
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	80.69

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=7.9e-63  Score=437.54  Aligned_cols=214  Identities=61%  Similarity=1.056  Sum_probs=202.6

Q ss_pred             cccCC-CCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          3 TTNDH-SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         3 ~~~d~-~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++|+ +|+....++.++||++++|||+||+|+|.||||||+|+||+.+|++|+++++++|+++||+++++++|||+|++
T Consensus        63 DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~  142 (331)
T 4aj2_A           63 DLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDIL  142 (331)
T ss_dssp             HHHHTGGGCSCCEEEECSSGGGGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHH
T ss_pred             hhhhhhhccCCCeEEEcCCHHHhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence            45666 37667778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCC
Q psy17689         82 TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD  161 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~  161 (216)
                      |+++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.+++++.+..++
T Consensus       143 t~~~~k~sg~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~  222 (331)
T 4aj2_A          143 TYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD  222 (331)
T ss_dssp             HHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTC
T ss_pred             HHHHHHHhCCCHHHEEeeccccHHHHHHHHHHHHhCCCHHHCEEeEEecCCCceeEeeecCeECCEEHHHHHhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875444456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       162 ~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|.++|+++|++|+++||+|+||+|+|+++++++|++|+++++|||++++
T Consensus       223 ~~~~~~i~~~v~~~g~eIi~~kg~t~~a~a~a~a~~~~ail~d~~~~~~vs~~~~  277 (331)
T 4aj2_A          223 KEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK  277 (331)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred             HHHHHHHHHHHHHhHHHHhhcCCCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            7889999999999999999999999999999999999999999999999999874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=6.1e-61  Score=424.65  Aligned_cols=213  Identities=40%  Similarity=0.692  Sum_probs=180.2

Q ss_pred             cccCCCCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          3 TTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         3 ~~~d~~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      +++|+........+.+++|++++|||+||+++|.|++|||+|+||+.+|++|++++++.+++++|+++++++|||+|++|
T Consensus        53 DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t  132 (326)
T 3vku_A           53 DLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILT  132 (326)
T ss_dssp             HHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHH
T ss_pred             hHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHH
Confidence            45565432223334577899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCH
Q psy17689         83 YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT  162 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~  162 (216)
                      |++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.+++++.+. +++
T Consensus       133 ~~~~k~~g~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~-~~~  211 (326)
T 3vku_A          133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPE-IKE  211 (326)
T ss_dssp             HHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHHCTT-SCH
T ss_pred             HHHHHhcCCCHHHeeeecccCcHHHHHHHHHHHhCCCHHHCeEEEEcCCCCeeEEeeeccccCCEEHHHHhccccC-CCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998764322 357


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       163 ~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++|.++|+++|++|+++||+|+||+|+|+++|+++|++|+++++|||++++
T Consensus       212 ~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~a~~~~~~ail~~~~~v~~~s~~~~  265 (326)
T 3vku_A          212 DKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMD  265 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            788999999999999999999999999999999999999999999999999873

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=8.9e-60  Score=417.32  Aligned_cols=200  Identities=44%  Similarity=0.749  Sum_probs=191.0

Q ss_pred             EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCC
Q psy17689         16 LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNR   95 (216)
Q Consensus        16 ~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~   95 (216)
                      +.+++|++++|||+||+++|.|++|||+|+||+..|++|++++++++++++|+++++++|||+|++|+++++.+|||++|
T Consensus        63 i~~~~~~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~k~~g~p~~r  142 (326)
T 3pqe_A           63 TSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKER  142 (326)
T ss_dssp             EEEECGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGG
T ss_pred             EEeCcHHHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHHHhcCCCHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHH
Q psy17689         96 VIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNS  175 (216)
Q Consensus        96 viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~  175 (216)
                      |||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.+++++.+. ++++++++|.++|+++
T Consensus       143 viG~gt~LD~~R~~~~la~~lgv~~~~V~~~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~-~~~~~~~~i~~~v~~~  221 (326)
T 3pqe_A          143 VIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDA-YKQEELDQIVDDVKNA  221 (326)
T ss_dssp             EEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHTCTT-SCHHHHHHHHHHHHHH
T ss_pred             EEeeccccHHHHHHHHHHHHhCCCHHHceeeeeecCCCceeeeeeeeeECCEEHHHHhhcccC-CCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999998764322 4577889999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        176 AYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       176 g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      |++|+++||+|+||+|+|+++|+++|++|+++++|||++++
T Consensus       222 g~eIi~~kG~t~~a~a~a~~~~~~ail~~~~~v~~~s~~~~  262 (326)
T 3pqe_A          222 AYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLD  262 (326)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEECCEEEEE
T ss_pred             hheeeeCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            99999999999999999999999999999999999999873

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=3e-59  Score=412.02  Aligned_cols=207  Identities=30%  Similarity=0.524  Sum_probs=186.7

Q ss_pred             cccCCCCC--CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          3 TTNDHSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         3 ~~~d~~~~--~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      +++|+.++  ...++..+++|++++|||+||+++|.|++|||+|+||+.+|++|++++++++++++|+++++++|||+|+
T Consensus        44 DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~  123 (314)
T 3nep_X           44 DMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDV  123 (314)
T ss_dssp             HHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHH
T ss_pred             HHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhH
Confidence            44555433  2445666789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      +|+++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.+++       
T Consensus       124 ~t~~~~k~~g~p~~rviG~~t~LD~~R~~~~la~~lgv~~~~v~~~ViG~Hg~t~vp~~S~~~v~g~p~~~~~-------  196 (314)
T 3nep_X          124 MTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPLPRYTTVGGIPVPQLI-------  196 (314)
T ss_dssp             HHHHHHHHHTCCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEEEEEEESSGGGEEEEEEEEEETTEEGGGTS-------
T ss_pred             HHHHHHHhcCCChHHEEeecCchHHHHHHHHHHHHhCcCHHHeEEEEECCCCCcEEeeeecCeECcEehhhcc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985       


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++++|.++|+++|++|+++|| +|+||+|+++++|+++|++|+++++|||++++
T Consensus       197 ~~~~~~~i~~~v~~~g~eIi~~kg~sa~~a~a~a~~~~~~ail~~~~~v~~~s~~~~  253 (314)
T 3nep_X          197 DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILPCAAYCD  253 (314)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence            356789999999999999999999 89999999999999999999999999999863

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=2.5e-58  Score=406.35  Aligned_cols=198  Identities=32%  Similarity=0.555  Sum_probs=190.4

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++..++||++++|||+||+++|.|++|||+|+|++.+|++|++++++++++++|+++++++|||+|++|+++++.+||
T Consensus        64 ~~~i~~t~d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~~k~sg~  143 (315)
T 3tl2_A           64 DANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGF  143 (315)
T ss_dssp             CCCEEEESCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEcCCHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHHHHhcCC
Confidence            45677778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.+++       +++++++|.++
T Consensus       144 p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~viG~Hg~t~vp~~S~~~v~g~p~~~~~-------~~~~~~~i~~~  216 (315)
T 3tl2_A          144 PKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVER  216 (315)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEECCEEBCSGGGCEECGGGCEETTEEGGGTS-------CHHHHHHHHHH
T ss_pred             ChHHEEeeccCcHHHHHHHHHHHHhCcCHHHceeeEecCCCCcceeecccCeECCEEHHHhC-------CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999975       35678999999


Q ss_pred             HHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        172 VVNSAYEIIR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       172 v~~~g~~ii~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      |+++|++|++  +||+|+||+|.|+++|+++|++|+++++|||++++
T Consensus       217 v~~~g~eii~~~~kgst~~a~a~a~~~~~~ail~~~~~v~~~s~~~~  263 (315)
T 3tl2_A          217 TRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLE  263 (315)
T ss_dssp             HHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            9999999999  89999999999999999999999999999999874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=2e-58  Score=403.42  Aligned_cols=191  Identities=35%  Similarity=0.557  Sum_probs=182.4

Q ss_pred             CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHh
Q psy17689          9 SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL   88 (216)
Q Consensus         9 ~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~   88 (216)
                      |+...++..++|+++++|||+||+++|.|++|||+|+|++.+|++|++++++++++++|+++++++|||+|+||+++++.
T Consensus        52 ~~~~~~i~~t~d~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~~k~  131 (294)
T 1oju_A           52 IDKYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKE  131 (294)
T ss_dssp             TTCCCEEEEESCGGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Confidence            44456777777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHH
Q psy17689         89 SGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKL  168 (216)
Q Consensus        89 sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l  168 (216)
                      +|||++||||+||.||++||++++| ++|++|++ +++||||||+||||+||+++++|+|               ++++|
T Consensus       132 ~g~p~~rviG~gt~LD~~R~~~~la-~l~v~~~~-~~~V~G~Hg~t~vp~~s~~~v~g~~---------------~~~~~  194 (294)
T 1oju_A          132 SGKPRNEVFGMGNQLDSQRLKERLY-NAGARNIR-RAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAV  194 (294)
T ss_dssp             SCCCTTSEEECSHHHHHHHHHHHHH-HTTCBSCC-CCCEEBCSSTTCEECGGGCCCBSCC---------------CHHHH
T ss_pred             cCCCHHHEeecccccHHHHHHHHHH-HhCCCccC-ceEEEecCCCceeeecccceECCcC---------------hHHHH
Confidence            9999999999999999999999999 99999999 9999999999999999999999876               25689


Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        169 HTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       169 ~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      .++|+++|++|+++||+|+||+|.|+++|+++|++|+++++|||++++
T Consensus       195 ~~~v~~~g~eii~~kG~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~  242 (294)
T 1oju_A          195 ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQ  242 (294)
T ss_dssp             HHHHHTTHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence            999999999999999999999999999999999999999999999863

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=2e-58  Score=403.31  Aligned_cols=189  Identities=34%  Similarity=0.560  Sum_probs=178.7

Q ss_pred             CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcC
Q psy17689         11 KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSG   90 (216)
Q Consensus        11 ~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg   90 (216)
                      ..+.++.++||++++|||+||||||.||||||+|+||+..|++|++++++++++++|+++++++|||+|+|||++++.+|
T Consensus        54 ~~~~i~~~~d~~~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~~k~sg  133 (294)
T 2x0j_A           54 KYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESG  133 (294)
T ss_dssp             CCCEEEEESCGGGGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSS
T ss_pred             CCCeEecCCCHHHhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhhHHHcC
Confidence            45778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHH
Q psy17689         91 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHT  170 (216)
Q Consensus        91 ~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~  170 (216)
                      +|++|+||+||.|||+||+++|+++++.++.  +++||||||+||||+||+++++|.+               +++++.+
T Consensus       134 ~p~~rvig~gT~LDs~R~~~~l~~~~~~~~~--~~~V~G~HGdt~vp~~S~~~v~g~~---------------~~~~i~~  196 (294)
T 2x0j_A          134 KPRNEVFGMGNQLDSQRLKERLYNAGARNIR--RAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAVEN  196 (294)
T ss_dssp             CCTTSEEECCHHHHHHHHHHHHHHTTCEEEC--CCCEEBCSSTTCEECGGGCCEESCC---------------CHHHHHH
T ss_pred             CChhhEEEeeeEEeHHHHHHHHhhcccCCcc--eeEEEecCCCcEEEeeeccCCCCch---------------hHHHHHH
Confidence            9999999999999999999999999887654  6899999999999999999998743               3567889


Q ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        171 DVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       171 ~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++|++|+++||+|+||+|+++++++++|++|+++++|||++++
T Consensus       197 ~~~~~g~eIi~~kGst~~a~a~a~~~~~~ail~d~~~v~~~s~~l~  242 (294)
T 2x0j_A          197 DVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQ  242 (294)
T ss_dssp             HHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred             HHhhhheEEEecCcccchhHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            9999999999999999999999999999999999999999999874

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=1.3e-57  Score=409.23  Aligned_cols=206  Identities=18%  Similarity=0.185  Sum_probs=187.3

Q ss_pred             ccccCCCCCCCce-EEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVN-VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~-v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd   79 (216)
                      ++++|++++.... .+.+++|++++|||+||||||.||||||+|+||+..|++|+++++++|+++ +|+++++|+|||+|
T Consensus        83 mDL~h~~~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD  162 (375)
T 7mdh_A           83 MELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  162 (375)
T ss_dssp             HHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             HhHHhhhhhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            4678888754333 345677999999999999999999999999999999999999999999998 89999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT  158 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~  158 (216)
                      +|||++++.+|++++|+||+||.|||+||+++||+++|++|++|++ +||||||+||||+||+++|+|+|+.+++++   
T Consensus       163 ~~t~ia~k~sg~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~~---  239 (375)
T 7mdh_A          163 TNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKR---  239 (375)
T ss_dssp             HHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCC---
T ss_pred             HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhccc---
Confidence            9999999999888889999999999999999999999999999997 799999999999999999999999998642   


Q ss_pred             CCCHHHH--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-----cCCCceEEEEeeeC
Q psy17689        159 EGDTEEF--GKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLL-----NNTNKIHAISTLIQ  216 (216)
Q Consensus       159 ~~~~~~~--~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail-----~~~~~ilpvS~~l~  216 (216)
                          ++|  +++.++|+++|++|+++||+|+|  |+++++++++|+     +|+++++|||++++
T Consensus       240 ----~~~~~~~i~~~v~~~g~eII~~kG~ts~--a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~  298 (375)
T 7mdh_A          240 ----TKWLEEEFTITVQKRGGALIQKWGRSSA--ASTAVSIADAIKSLVTPTPEGDWFSTGVYTT  298 (375)
T ss_dssp             ----HHHHHHHHHHHHHTHHHHHHHHTSSCCH--HHHHHHHHHHHHHHHSCCCTTCCEEEEEECT
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeC
Confidence                334  78999999999999999999998  677777777776     69999999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=9.3e-58  Score=403.62  Aligned_cols=212  Identities=28%  Similarity=0.434  Sum_probs=195.7

Q ss_pred             cccCCCCC--CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689          3 TTNDHSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI   80 (216)
Q Consensus         3 ~~~d~~~~--~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~   80 (216)
                      +++|+.++  ...++..++||++++|||+||+++|.|++|||+|+|++.+|++|++++++++++++|+++++++|||+|+
T Consensus        48 dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~  127 (321)
T 3p7m_A           48 DLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDI  127 (321)
T ss_dssp             HHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred             HHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHH
Confidence            44555432  2455666789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG  160 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~  160 (216)
                      +|+++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.++++.  ..+
T Consensus       128 ~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la~~l~v~~~~v~~~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~--~~~  205 (321)
T 3p7m_A          128 MVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVPLTKMSNVAGVSLEQLVKE--GKL  205 (321)
T ss_dssp             HHHHHHHHHCCCGGGEEEECHHHHHHHHHHHHHHHHTCCGGGEECCEEECSGGGEEECTTTCEETTEEHHHHHHT--TSS
T ss_pred             HHHHHHHhcCCCHHHEEeeccchHHHHHHHHHHHHhCcCHHHceEeeecCcCCceeeeeeeceECCEehhhhccc--cCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998742  124


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++++++.++++++|++|++.  ||+|+||+|.|+++++++|++|+++++|||++++
T Consensus       206 ~~~~~~~i~~~v~~~g~eIi~~~g~gsa~~~~a~a~~~~~~ail~~~~~v~~~s~~~~  263 (321)
T 3p7m_A          206 KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVK  263 (321)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHhhhHHHHHhcCCCChHHHHHHHHHHHHHHHHcCCCcEEEEEEEcc
Confidence            6788999999999999999995  6789999999999999999999999999999874

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=8e-57  Score=398.08  Aligned_cols=203  Identities=29%  Similarity=0.487  Sum_probs=186.8

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++..++||++++|||+||+++|.|++|||+|+|++.+|++|++++++++++++|+++++++|||+|++|+++++.+||
T Consensus        61 ~~~v~~t~d~~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~  140 (324)
T 3gvi_A           61 DAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGL  140 (324)
T ss_dssp             CCCEEEESSGGGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCHHHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCC
Confidence            45667778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+++|+|+|+.++++..  .+++++++++.++
T Consensus       141 p~~rviG~~~~LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~~--~~~~~~~~~i~~~  218 (324)
T 3gvi_A          141 PAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVPLARYSTVAGIPLPDLVKMG--WTSQDKLDKIIQR  218 (324)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHH
T ss_pred             CHHHEEeecCccHHHHHHHHHHHHhCcCHHHCeEEEEcCCCCceeeehhhCeECCEEHHHhhhcc--CCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987431  2467889999999


Q ss_pred             HHHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        172 VVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       172 v~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++|++|++.  ||+|+||+|+|+++|+++|++|+++++|||++++
T Consensus       219 v~~~g~eIi~~~gkgsa~~~~a~a~~~~~~ail~~~~~v~~~s~~~~  265 (324)
T 3gvi_A          219 TRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLS  265 (324)
T ss_dssp             HHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence            99999999995  6789999999999999999999999999999863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.7e-57  Score=402.86  Aligned_cols=210  Identities=21%  Similarity=0.323  Sum_probs=185.0

Q ss_pred             cccCCCCCCCceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeE-EEEEcCchhH
Q psy17689          3 TTNDHSSFKGVNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCT-LLIVSNPVDI   80 (216)
Q Consensus         3 ~~~d~~~~~~~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~i-iivvtNPvd~   80 (216)
                      +++|++|+. ..+..++|+ ++++|||+||+|+|.|++|||+|+||+..|++|++++++++++++|+++ ++++|||+|+
T Consensus        53 DL~~~~~~~-~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~  131 (343)
T 3fi9_A           53 EIRHCGFEG-LNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADI  131 (343)
T ss_dssp             HHHHHCCTT-CCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHH
T ss_pred             hhhhCcCCC-CceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHH
Confidence            456666643 345556776 4699999999999999999999999999999999999999999999996 9999999999


Q ss_pred             HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCcee-EEEEccCCCCcccceeeeeECCeeccccCccCCCC
Q psy17689         81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY-GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE  159 (216)
Q Consensus        81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~-~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~  159 (216)
                      +|+++++.+|||++||+| ||.||++||++++|+++|++|++|+ ++||||||+||||+||+++|+|+|+.++++..  .
T Consensus       132 ~t~i~~k~sg~p~~rv~g-~t~LDs~R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~--~  208 (343)
T 3fi9_A          132 TGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTD--K  208 (343)
T ss_dssp             HHHHHHHHHTCCGGGEEE-ECCHHHHHHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBT--T
T ss_pred             HHHHHHHHcCCCcceEEE-ecCcHHHHHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhcccc--C
Confidence            999999999999999997 5999999999999999999999998 79999999999999999999999999987542  2


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       160 ~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~-~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++++|++|.++|+++|++|+++||+|+| ++|.|+++++++|++|+++++|+|++++
T Consensus       209 ~~~~~~~~i~~~v~~~g~eIi~~kg~ss~~s~A~a~~~~~~ail~d~~~v~~~s~~~~  266 (343)
T 3fi9_A          209 LTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVN  266 (343)
T ss_dssp             BCHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSCCCSCEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhhHHHHHccCCCcHHhHHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence            56889999999999999999999998765 9999999999999999999999999873

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.2e-55  Score=388.20  Aligned_cols=212  Identities=40%  Similarity=0.662  Sum_probs=195.7

Q ss_pred             ccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          4 TNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         4 ~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      ++|+. |....++.. ++|++++|||+||+++|.|++|||+|+|++.+|+++++++++.+++++|+++++++|||+|++|
T Consensus        45 l~~~~~~~~~~~v~~-~~~~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t  123 (310)
T 2xxj_A           45 ILHATPFAHPVWVWA-GSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMT  123 (310)
T ss_dssp             HHTTGGGSCCCEEEE-CCGGGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHH
T ss_pred             HHHhHhhcCCeEEEE-CCHHHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHH
Confidence            44543 333445554 6899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCH
Q psy17689         83 YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT  162 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~  162 (216)
                      +++++.+|||++||||+||.||+.|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.++++.....+++
T Consensus       124 ~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~  203 (310)
T 2xxj_A          124 QVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSP  203 (310)
T ss_dssp             HHHHHHHTCCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCH
T ss_pred             HHHHHHcCCCHHHEEecCcchhHHHHHHHHHHHhCcCHHHeEEEEecccCCccccchhhccCCCEEHHHHhhhcccCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987643322467


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       163 ~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +.++++.++++++|++|++.||+++|++|.++++++++|++|+++++|+|++++
T Consensus       204 ~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~vs~~~~  257 (310)
T 2xxj_A          204 EDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTP  257 (310)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHhccCCcHHHHHHHHHHHHHHHHcCCCCEEEEEEEEc
Confidence            788999999999999999999999999999999999999999999999999863

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.1e-55  Score=387.99  Aligned_cols=210  Identities=37%  Similarity=0.646  Sum_probs=184.6

Q ss_pred             ccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          4 TNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         4 ~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      ++|+. |....++. .++|++++|||+||+++|.|++|||+|+|++.+|+++++++++.+++++|+++++++|||+|++|
T Consensus        50 l~~~~~~~~~~~v~-~~~~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t  128 (318)
T 1ez4_A           50 LEDAQAFTAPKKIY-SGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILT  128 (318)
T ss_dssp             HHGGGGGSCCCEEE-ECCGGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHH
T ss_pred             HHHHHHhcCCeEEE-ECCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHH
Confidence            34443 43344444 47899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCH
Q psy17689         83 YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT  162 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~  162 (216)
                      +++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.++++..  .+++
T Consensus       129 ~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~--~~~~  206 (318)
T 1ez4_A          129 YATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSD  206 (318)
T ss_dssp             HHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEESSSSSSCEECGGGCEETTEEHHHHHHHT--TCCH
T ss_pred             HHHHHHcCCCHHHEEeccccchHHHHHHHHHHHhCcChhHEEEEEecccCCceEEEehhhcCCCeeHHHHhhcc--CCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887542  2567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       163 ~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +.++++.++++++|++|+++||+++|++|.++++++++|++|+++++|+|++++
T Consensus       207 ~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~vs~~~~  260 (318)
T 1ez4_A          207 DDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMD  260 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhhhhheeCCCcchHHHHHHHHHHHHHHHhCCCcEEEEEEeec
Confidence            788999999999999999999999999999999999999999999999999863

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=5.1e-55  Score=386.77  Aligned_cols=210  Identities=40%  Similarity=0.682  Sum_probs=189.4

Q ss_pred             cccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          3 TTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         3 ~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++|+. +....++. +++|++++|||+||+++|.|++|||+|+|++.+|+++++++++.|++++|+++++++|||+|++
T Consensus        53 dl~~~~~~~~~~~i~-~~~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~  131 (326)
T 2zqz_A           53 DLSNALPFTSPKKIY-SAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDIL  131 (326)
T ss_dssp             HHHTTGGGSCCCEEE-ECCGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHH
T ss_pred             HHHHHHHhcCCeEEE-ECCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHH
Confidence            344543 33344444 4789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCc-cCCCCC
Q psy17689         82 TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNP-AIGTEG  160 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~-~~~~~~  160 (216)
                      |+++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.++++ +.  .+
T Consensus       132 t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~--~~  209 (326)
T 2zqz_A          132 TYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP--EI  209 (326)
T ss_dssp             HHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHHCT--TS
T ss_pred             HHHHHHHcCCCHHHEEEccccchHHHHHHHHHHHhCCChhheEEEEecccCCceEeehhhceECCEEHHHhhcccc--cC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998865 22  25


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      +++.++++.++++++|++|+++||+++|++|.++++++++|++|+++++|+|+++
T Consensus       210 ~~~~~~~i~~~v~~~g~eii~~kG~t~~~~a~aa~~~~~ai~~~~~~~~~vsv~~  264 (326)
T 2zqz_A          210 KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYM  264 (326)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhHHHHHHcCCCcHHHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            6778899999999999999999999999999999999999999999999999986

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.7e-54  Score=380.71  Aligned_cols=197  Identities=31%  Similarity=0.515  Sum_probs=189.8

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++..++||++++|||+||+++|.|++|||+|+|++.+|++|++++++++.+++|++++|++|||+|++|+++++.+||
T Consensus        53 ~~~i~~t~d~~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~~~~  132 (308)
T 2d4a_B           53 DIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVMYKKTGF  132 (308)
T ss_dssp             CCCEEEESCGGGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCC
T ss_pred             CeEEEECCCHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCC
Confidence            45577778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.+++       ++++++++.++
T Consensus       133 p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~  205 (308)
T 2d4a_B          133 PRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVPRLSSVGGVPLEHLM-------SKEEIEEVVSE  205 (308)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHS-------CHHHHHHHHHH
T ss_pred             ChhhEEEecccchHHHHHHHHHHHhCcChhHeEEEEEeccCCceeeeehhccCCCEEHHHHc-------CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998875       36778999999


Q ss_pred             HHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        172 VVNSAYEIIRLKG-YTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       172 v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++++|++|++.|| +++|++|.++++++++|++|+++++|||+++
T Consensus       206 v~~~g~eii~~kg~s~~~~~a~a~~~~~~ai~~~~~~v~~vs~~~  250 (308)
T 2d4a_B          206 TVNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYPYSLYL  250 (308)
T ss_dssp             HHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHHhhHhhhhCCCCccHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence            9999999999999 9999999999999999999999999999986

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.4e-54  Score=378.87  Aligned_cols=212  Identities=41%  Similarity=0.642  Sum_probs=181.5

Q ss_pred             ccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          4 TNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         4 ~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      ++|+. +....++. .+++++++|||+||+++|.|++||++|+|++.+|+++++++++.+.+++|+++++++|||+|++|
T Consensus        52 l~~~~~~~~~~~i~-~~~~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~  130 (318)
T 1y6j_A           52 INHGLPFMGQMSLY-AGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIIT  130 (318)
T ss_dssp             HTTSCCCTTCEEEC---CGGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHH
T ss_pred             HHHhHHhcCCeEEE-ECCHHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHH
Confidence            34443 33333343 46899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCH
Q psy17689         83 YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT  162 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~  162 (216)
                      +++++.+|||++||||+||.||+.|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.++++.....+.+
T Consensus       131 ~~~~k~s~~p~~rviG~gt~Ld~~r~~~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~  210 (318)
T 1y6j_A          131 YMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTE  210 (318)
T ss_dssp             HHHHHHHTCCTTTEEECTTHHHHHHHHHHHHTTTTCCTTTEECCEEBCSSSSCEECCTTCEETTBCSCCC----------
T ss_pred             HHHHHHcCCCHHHEeccCCchHHHHHHHHHHHHhCCCHHHeEEEEecccCCcEeeeehhceECCEEHHHHhhhhcccCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987532112445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       163 ~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++++.++++++|++|++.||+++|++|.++++++++|++|+++++|+|++++
T Consensus       211 ~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  264 (318)
T 1y6j_A          211 EDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN  264 (318)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHTCCCEECCEEEEC
T ss_pred             HHHHHHHHHHHHhhHhHhhCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            667899999999999999999999999999999999999999999999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=3.9e-56  Score=394.10  Aligned_cols=192  Identities=51%  Similarity=0.853  Sum_probs=180.8

Q ss_pred             ccCC-CCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          4 TNDH-SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         4 ~~d~-~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      ++|+ +|....+++.++||++++|||+|||++|.||+|||+|+|++.+|++|++++++++.+++|+++++++|||+|++|
T Consensus        66 L~~~~~~~~~~~i~~t~d~~~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t  145 (330)
T 3ldh_A           66 LEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKN  145 (330)
T ss_dssp             HHHHGGGSCCSEEEEESSSCSCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHH
T ss_pred             hhhhhhcccCCeEEEcCCHHHhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHH
Confidence            4454 566677888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCH
Q psy17689         83 YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT  162 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~  162 (216)
                      +++++.+|||++||||+||.||++|+++++|+++|++|++|+++||||||+||||+||+         ++.         
T Consensus       146 ~~~~k~sg~p~~rViG~gt~LDs~R~~~~lA~~lgv~~~~V~~~V~G~Hg~t~vp~~S~---------~~~---------  207 (330)
T 3ldh_A          146 KQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQHGDSVPSVWSG---------MWD---------  207 (330)
T ss_dssp             HHHHHHHCCCGGGEECCTTHHHHHHHHHHHHHHHTSCTTTCCEEECSSSSTTCCEEEEE---------EEE---------
T ss_pred             HHHHHHhCCCHHHeecccCchhHHHHHHHHHHHhCCCHHHeEEEEEcCCCCceeeechh---------hHH---------
Confidence            99999999999999999999999999999999999999999999999999999999998         121         


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChhHHH-----------------HHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGL-----------------SIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       163 ~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~-----------------a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                         +++.++|+++|++|+++||+|+||+|+                 ++++|+++|++|+++++|||++++
T Consensus       208 ---~~~~~~v~~~g~eii~~kg~t~~a~a~~~~~~~~~~~~~~~~~~a~~~~~~ail~~~~~v~~~s~~~~  275 (330)
T 3ldh_A          208 ---AKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVK  275 (330)
T ss_dssp             ---TTEEHHHHHCCCTTSTTCHHHHHHHHHTTHHHHTTSSSCSCTHHHHHHHHHHHHHTCCEEECCBCCCS
T ss_pred             ---HHHHHHHHHHHHHHHHccCCcceeeeeeccCccchhhhhhhHHHHHHHHHHHHHcCCCceEEEEeecC
Confidence               357888999999999999999999999                 999999999999999999999864

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=5e-54  Score=382.82  Aligned_cols=207  Identities=22%  Similarity=0.238  Sum_probs=185.5

Q ss_pred             ccccCCCCCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd   79 (216)
                      ++++|++|+....++.++| |++++|||+|||+||.||||||+|+||+..|++|+++++++|++++ |+++++++|||+|
T Consensus        75 ~DL~~~~~~~~~~~~~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd  154 (345)
T 4h7p_A           75 AELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN  154 (345)
T ss_dssp             HHHHHTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhhhcCccCCCcEEEcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc
Confidence            4678898887666665555 5679999999999999999999999999999999999999999996 8999999999999


Q ss_pred             HHHHHHHH-hcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689         80 ILTYVSWK-LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIG  157 (216)
Q Consensus        80 ~~t~~~~~-~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~  157 (216)
                      +|++++++ .+|+|++|+||.||.||++|++++||+++|++|++|+++ ||||||+||||+||+++++|+|+.++++.  
T Consensus       155 ~~~~i~~~~~~g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~--  232 (345)
T 4h7p_A          155 TNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKD--  232 (345)
T ss_dssp             HHHHHHHHHTTTCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC--
T ss_pred             hHHHHHHHHccCCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcch--
Confidence            99999887 569999999999999999999999999999999999975 89999999999999999999999998752  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcCCCceEEEEee
Q psy17689        158 TEGDTEEFGKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLLNNTNKIHAISTL  214 (216)
Q Consensus       158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail~~~~~ilpvS~~  214 (216)
                          +...+++.++++++|++|++.|| +++|++|.|+++++++++++++...|||+.
T Consensus       233 ----~~~~~~~~~~v~~~g~eIi~~kg~ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~  286 (345)
T 4h7p_A          233 ----DALDDDFVQVVRGRGAEIIQLRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMG  286 (345)
T ss_dssp             ----------HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEE
T ss_pred             ----hhHHHHHHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHHHHhcCCCCceEEEEE
Confidence                11225799999999999999998 477999999999999999999999999864

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=9.3e-54  Score=377.10  Aligned_cols=200  Identities=39%  Similarity=0.700  Sum_probs=189.9

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++. .+++++++|||+||+++|.|++||++|+|++.+|+++++++++.|++++|+++++++|||+|++|+++++.+|||
T Consensus        62 ~~v~-~~~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p  140 (317)
T 3d0o_A           62 VRVK-AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLP  140 (317)
T ss_dssp             CEEE-ECCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCC
T ss_pred             eEEE-eCCHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCC
Confidence            3444 478999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.++++..  .++++.++++.+++
T Consensus       141 ~~rviG~gt~lD~~r~~~~la~~l~v~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v  218 (317)
T 3d0o_A          141 KERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPVWSHANIAGQPLKTLLEQR--PEGKAQIEQIFVQT  218 (317)
T ss_dssp             GGGEEECTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBCSSTTCEECTTTCEETTEEHHHHHHTS--TTHHHHHHHHHHHH
T ss_pred             HHHEEecCccccHHHHHHHHHHHhCcChhhEEEEEEecCCCCeeEeeeccccCCEEHHHHhhcc--CCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999987642  25566789999999


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        173 VNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       173 ~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      +++|++|+++||+++|++|.|+++++++|++|+++++|+|+++
T Consensus       219 ~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~  261 (317)
T 3d0o_A          219 RDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLTVSALL  261 (317)
T ss_dssp             HTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HhhhhEEEeCCCCchHhHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            9999999999999999999999999999999999999999986

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=9.6e-54  Score=376.64  Aligned_cols=196  Identities=26%  Similarity=0.426  Sum_probs=179.7

Q ss_pred             cccCCCCCCCceEEE---cCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689          3 TTNDHSSFKGVNVLT---RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD   79 (216)
Q Consensus         3 ~~~d~~~~~~~~v~~---~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd   79 (216)
                      +++|.++  ...+..   +++|++++|||+|||++|.||+|||+|+||+.+|++|++++++++++++|+++++++|||+|
T Consensus        45 Dl~~~~~--~~~v~~~~~~~~~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd  122 (312)
T 3hhp_A           45 DLSHIPT--AVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVN  122 (312)
T ss_dssp             HHHTSCS--SEEEEEECSSCCHHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             HhhCCCC--CceEEEecCCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcch
Confidence            4555433  334443   36789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HHHhcCC-CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC-CCCcccceeeeeECCeeccccCc
Q psy17689         80 ILTYV---SWKLSGF-PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREVNP  154 (216)
Q Consensus        80 ~~t~~---~~~~sg~-~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~~~  154 (216)
                      ++|++   +++.+|+ |++||||+| .||++|++++||+++|++|++|+++||||| |+||||+||++  +|.|      
T Consensus       123 ~~t~~a~~~~k~sg~~p~~rv~G~~-~LD~~R~~~~la~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~--~g~~------  193 (312)
T 3hhp_A          123 TTVAIAAEVLKKAGVYDKNKLFGVT-TLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVS------  193 (312)
T ss_dssp             HHHHHHHHHHHHTTCCCTTSEEECC-HHHHHHHHHHHHHHHTCCGGGCCCCEEECSSGGGEEECGGGC--TTCC------
T ss_pred             hHHHHHHHHHHHcCCCCcceEEEEe-chhHHHHHHHHHHHhCcChhHcceeEEeccCCCceeeecccC--CCCC------
Confidence            99999   8899998 999999997 999999999999999999999999999999 89999999998  6654      


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHH---HcCCCceEEEEeee
Q psy17689        155 AIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTL---LNNTNKIHAISTLI  215 (216)
Q Consensus       155 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ai---l~~~~~ilpvS~~l  215 (216)
                           +++++|++|.++||++|++|+++|   |+|+||+|.|+++++++|   ++|+++++||| ++
T Consensus       194 -----~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai~~~l~~~~~v~~~s-~~  254 (312)
T 3hhp_A          194 -----FTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA-YV  254 (312)
T ss_dssp             -----CCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHTTCSSCEEEE-EE
T ss_pred             -----CCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHHHHHcCCCCceEEEE-Ee
Confidence                 346789999999999999999998   999999999999999999   89999999999 65

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=2.1e-52  Score=368.18  Aligned_cols=202  Identities=38%  Similarity=0.732  Sum_probs=190.3

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++. ++++++++|||+||+++|.|++||++|+|++.+|+++++++++.+.+++|+++++++|||+|++|+++++.+|||
T Consensus        62 ~~i~-~~~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~~~~s~~p  140 (316)
T 1ldn_A           62 VDIW-HGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLP  140 (316)
T ss_dssp             CEEE-ECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCC
T ss_pred             eEEE-cCcHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHHHhCCC
Confidence            3344 578899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.++++... .+.+++++++.+++
T Consensus       141 ~~rviG~gt~lD~~r~~~~la~~l~v~~~~v~~~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~v  219 (316)
T 1ldn_A          141 HERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLERIFVNV  219 (316)
T ss_dssp             GGGEEECTTHHHHHHHHHHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEESTTTSGGGT-TTHHHHHHHHHHHH
T ss_pred             HHHEEecccchHHHHHHHHHHHHhCCCHHHeEEEEecccCCceeeeehhccCCCEEHHHHhhccc-cCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876421 14566789999999


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|++.||+++|++|.++++++++|++|+++++|+|++++
T Consensus       220 ~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  263 (316)
T 1ldn_A          220 RDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD  263 (316)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHhHHHHHhccCCcHHHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence            99999999999999999999999999999999999999999863

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1.4e-52  Score=368.32  Aligned_cols=197  Identities=28%  Similarity=0.514  Sum_probs=181.3

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++..++||++++|||+||+++|.|++||++|.|++.+|+++++++++.+.+++|+++++++|||+|++|+++++.+||
T Consensus        56 ~~~i~~t~d~~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~~~~~~~  135 (309)
T 1ur5_A           56 DVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGF  135 (309)
T ss_dssp             CCCEEEESCGGGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHHHHHHCC
T ss_pred             CeEEEECCCHHHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHHHHHcCC
Confidence            44566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.+++       ++++++++.++
T Consensus       136 ~~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~  208 (309)
T 1ur5_A          136 PKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSCISGIPVSEFI-------APDRLAQIVER  208 (309)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEEECCEECSGGGEECCGGGEEETTEEGGGTS-------CHHHHHHHHHH
T ss_pred             CHHHEEECCcchHHHHHHHHHHHHhCCChhheeEEEecCcCCceeeeeecceeCCEeHHHHc-------CHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998875       36778999999


Q ss_pred             HHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        172 VVNSAYEIIR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       172 v~~~g~~ii~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++++|++|++  .||+++|++|.++++++++|++|+++++|||+++
T Consensus       209 v~~~g~eii~~~~kgs~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~  254 (309)
T 1ur5_A          209 TRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYL  254 (309)
T ss_dssp             HHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHhhhHHhhhhccCCCcHHHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            9999999999  7999999999999999999999999999999986

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=2.6e-52  Score=365.64  Aligned_cols=195  Identities=31%  Similarity=0.512  Sum_probs=185.5

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++.. +++++++|||+||+++|.|++||++|+|++..|+++++++++++++++|+++++++|||+|++|+++++.+||
T Consensus        57 ~~~v~~-~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~  135 (303)
T 1o6z_A           57 NTRVRQ-GGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDR  135 (303)
T ss_dssp             CCEEEE-CCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSS
T ss_pred             CcEEEe-CCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCC
Confidence            444444 5788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||++|+++++|+++|++|++|+++||||||++++|+||+++++|+|  +|+       ++++++++.++
T Consensus       136 p~~rviG~gt~Ld~~r~~~~la~~l~v~~~~v~~~v~G~HG~~~~p~~s~~~v~g~p--~~~-------~~~~~~~~~~~  206 (303)
T 1o6z_A          136 SREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTD--PEF-------SGDEKEQLLGD  206 (303)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTBC--CCC-------CHHHHHHHHHH
T ss_pred             CHHHeeecccchhHHHHHHHHHHHhCcCHHHeEEEEEeCCCCccccCCcccccCCcC--ccC-------CHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998  664       36778999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        172 VVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       172 v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++|++|++.||+++|++|.++++++++|++|+++++|+|++++
T Consensus       207 v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  251 (303)
T 1o6z_A          207 LQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLE  251 (303)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred             HHHHhHHHHhcCCChHHHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            999999999999999999999999999999999999999999863

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=2.3e-52  Score=370.83  Aligned_cols=210  Identities=19%  Similarity=0.238  Sum_probs=182.3

Q ss_pred             ccccCCCCCCCceEEE-cCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCe-EEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLT-RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC-TLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~-~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~-iiivvtNPvd   79 (216)
                      ++++|++++....+.. +++|++++|||+||++||.||+|||+|+||+..|+++++++++++++++|++ +++++|||+|
T Consensus        54 ~DL~~~~~~~~~~~~~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd  133 (333)
T 5mdh_A           54 MELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN  133 (333)
T ss_dssp             HHHHHTCCTTEEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhHhhhhcccCCEEEcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchH
Confidence            3566766554444544 4457889999999999999999999999999999999999999999999998 6999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeE--CCeec--cccCc
Q psy17689         80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNV--AGVNL--REVNP  154 (216)
Q Consensus        80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v--~g~~l--~~~~~  154 (216)
                      +|||++++.+|++|+++||+||.||++||++++|+++|++|++|+++ ||||||+||||+||++++  +|+|+  .++++
T Consensus       134 ~~t~~~~~~~~~~p~~~ig~~t~LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~  213 (333)
T 5mdh_A          134 TNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVK  213 (333)
T ss_dssp             HHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHC
T ss_pred             HHHHHHHHHcCCCCcCEEEEEEhHHHHHHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhc
Confidence            99999999997666667999999999999999999999999999998 599999999999999986  78865  45543


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689        155 AIGTEGDTEEFGKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLLNNT--NKIHAISTLIQ  216 (216)
Q Consensus       155 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail~~~--~~ilpvS~~l~  216 (216)
                      +     ++...+++.++++++|++|+++|| ++.|++|.++++++++|++|+  ++++|||++++
T Consensus       214 ~-----~~~~~~~~~~~v~~~g~eIi~~k~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~  273 (333)
T 5mdh_A          214 D-----DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISD  273 (333)
T ss_dssp             C-----HHHHHTHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECT
T ss_pred             c-----ccccHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecC
Confidence            1     112246899999999999999876 688999999999999999996  48999999874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=6.9e-51  Score=359.68  Aligned_cols=203  Identities=31%  Similarity=0.451  Sum_probs=192.4

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcC-----HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHH
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW   86 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~-----r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~   86 (216)
                      ..++..++||++++|||+||+++|.|++||++     |.|++.+|++++++++++|.+++|+++++++|||+|++|++++
T Consensus        58 ~~~i~~t~d~~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~~  137 (322)
T 1t2d_A           58 NCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLH  137 (322)
T ss_dssp             CCCEEEECCGGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHH
T ss_pred             CcEEEECCCHHHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHHH
Confidence            45567778998899999999999999999999     9999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHH
Q psy17689         87 KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFG  166 (216)
Q Consensus        87 ~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~  166 (216)
                      +.+|||++||||+||.||++|+++++|+++|++|++|+++||||||++++|+||+++++|+|+.++++..  .+++++++
T Consensus       138 ~~~g~~~~rviG~gt~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~  215 (322)
T 1t2d_A          138 QHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LISDAELE  215 (322)
T ss_dssp             HHHCCCGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHH
T ss_pred             HhcCCChHHEEeccCcccHHHHHHHHHHHhCCCHHHeEEEEEcCCCCcEEeeHHHceECcEeHHHhcccc--CCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987642  24577789


Q ss_pred             HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        167 KLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       167 ~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++.++++++|++|++.||+++||+|.++++++++|++|+++++|||++++
T Consensus       216 ~~~~~v~~~g~eii~~kgs~~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~  265 (322)
T 1t2d_A          216 AIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLE  265 (322)
T ss_dssp             HHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            99999999999999999999999999999999999999999999999863

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.8e-50  Score=357.66  Aligned_cols=202  Identities=27%  Similarity=0.466  Sum_probs=191.1

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++..++|+++++|||+||+++|.|++||++|.|++.+|+++++++++++.+++|+++++++|||+|++|+++++.+||
T Consensus        68 ~~~i~~t~d~~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~  147 (328)
T 2hjr_A           68 PAKIFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGI  147 (328)
T ss_dssp             CCCEEEESCGGGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCC
T ss_pred             CCEEEECCCHHHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCC
Confidence            44577778998899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      ||+||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.+++++  ..+++++++++.++
T Consensus       148 ~~~rviG~~t~Ld~~R~~~~la~~lgv~~~~v~~~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~--~~~~~~~~~~~~~~  225 (328)
T 2hjr_A          148 PANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPLTSSVTIGGILLSDFVEQ--GKITHSQINEIIKK  225 (328)
T ss_dssp             CGGGEEESCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHT--TSSCHHHHHHHHHH
T ss_pred             ChhhEEEeCcHHHHHHHHHHHHHHhCCCHHHeeEEEecCCCCceeeeeeeceECCEEHHHHhhc--cCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988653  12457778999999


Q ss_pred             HHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        172 VVNSAYEIIR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       172 v~~~g~~ii~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++++|++|++  +||+++||+|.++++++++|++|+++++|||+++
T Consensus       226 v~~~g~eii~~~~~gs~~~~~a~a~~~i~~ai~~~~~~v~~~~v~~  271 (328)
T 2hjr_A          226 TAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYL  271 (328)
T ss_dssp             HHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHhhHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            9999999999  6999999999999999999999999999999986

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=1.3e-50  Score=356.29  Aligned_cols=198  Identities=31%  Similarity=0.540  Sum_probs=180.0

Q ss_pred             CceEEEcCC--ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhc
Q psy17689         12 GVNVLTRLN--YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLS   89 (216)
Q Consensus        12 ~~~v~~~~~--~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~s   89 (216)
                      ...+..++|  +++++|||+||++||.|++||++|.+++..|+++++++++++++++ +++++++|||+|++|+++++.+
T Consensus        58 ~~~i~~~~d~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~~k~~  136 (313)
T 1hye_A           58 DANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKALVDS  136 (313)
T ss_dssp             CCEEEEEETTCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHHHHHH
T ss_pred             CeEEEeCCcchHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHHHHhh
Confidence            335554444  7889999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHH
Q psy17689         90 GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLH  169 (216)
Q Consensus        90 g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~  169 (216)
                      |+|++||||+||.||+.|+++++|+++|++|++|+++||||||+|++|+||+++++|+|+.+++.     +++++++++.
T Consensus       137 ~~p~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~-----~~~~~~~~~~  211 (313)
T 1hye_A          137 KFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFER-----FKELPIDEII  211 (313)
T ss_dssp             CCCTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTEEGGGCGG-----GGGCCHHHHH
T ss_pred             CcChhcEEEeCccHHHHHHHHHHHHHhCcCHHHeEEEEeeccCCcccceeeccccCCEEHHHHhc-----CCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998741     2345578999


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        170 TDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       170 ~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++++++|++|+++||+++|++|.++++++++|++|+++++|+|+++
T Consensus       212 ~~v~~~g~eii~~kgs~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~  257 (313)
T 1hye_A          212 EDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYV  257 (313)
T ss_dssp             HHHHHHTTSCCC------CCHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHHHhccceeecCCCCcHHHHHHHHHHHHHHHHcCCCeEEEEEEee
Confidence            9999999999999999999999999999999999999999999986

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=3.3e-50  Score=352.32  Aligned_cols=202  Identities=37%  Similarity=0.579  Sum_probs=166.0

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++.. +++++++|||+||+++|.|++|||+|+|++.+|+++++++++++.+++|+++++++|||+|++++++++.+  
T Consensus        54 ~~~i~~-~~~~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~--  130 (304)
T 2v6b_A           54 GTRVWH-GGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLA--  130 (304)
T ss_dssp             CCEEEE-ECGGGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHS--
T ss_pred             CeEEEE-CCHHHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhC--
Confidence            444543 68999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||+.|+++++|+++|++|++|+++||||||+|+||+||+++++|+|+.++++.....+++++++++.++
T Consensus       131 ~~~rviG~gt~Ld~~r~~~~la~~l~v~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~  210 (304)
T 2v6b_A          131 PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEG  210 (304)
T ss_dssp             CSSCEEECTTHHHHHHHHHHHHHHHTSCGGGEECCEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHH
T ss_pred             ChhcEEeCCcCchHHHHHHHHHHHhCcCHHHceEEEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999886543222467778999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        172 VVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       172 v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++|++|+++||+|+|++|.++++++++|++|+++++|||++++
T Consensus       211 v~~~~~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  255 (304)
T 2v6b_A          211 TRNAAASIIEGKRATYYGIGAALARITEAVLRDRRAVLTVSAPTP  255 (304)
T ss_dssp             HTC-----------CCHHHHHHHHHHHHHHHTTCCEEEEEEEEET
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhCCCcEEEEEEEEC
Confidence            999999999999999999999999999999999999999999874

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=2.5e-49  Score=347.48  Aligned_cols=198  Identities=33%  Similarity=0.529  Sum_probs=189.4

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ..++..++|++++++||+||++++.|++||++|.|++.+|+++++++++.+++++|+++++++|||+|++++++++.+|+
T Consensus        55 ~~~i~~t~d~~~l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~~~~~~~  134 (310)
T 1guz_A           55 DTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGL  134 (310)
T ss_dssp             CCEEEEESCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCS
T ss_pred             CcEEEECCCHHHHCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHHHHhcCC
Confidence            44566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      |++||||+||.||+.|+++++|+++|+++++|+++||||||+++||+||+++++|+|+.+++       ++++++++.++
T Consensus       135 ~~~rviG~gt~ld~~r~~~~la~~l~v~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~  207 (310)
T 1guz_A          135 PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PAETIDKLVER  207 (310)
T ss_dssp             CGGGEEEECHHHHHHHHHHHHHHHHTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHS-------CHHHHHHHHHH
T ss_pred             ChHHEEECCCchHHHHHHHHHHHHhCCCHHHeEEEEEcccCCcEeeeeecccCCCEEHHHHC-------CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999875       36778999999


Q ss_pred             HHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        172 VVNSAYEIIR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       172 v~~~g~~ii~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++|++|++  .||+++|++|.++++++++|++|+++++|||++++
T Consensus       208 v~~~g~~ii~~~~kgs~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  254 (310)
T 1guz_A          208 TRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLE  254 (310)
T ss_dssp             HHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHhHHHHHhhcCCCCcHHHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            9999999999  79999999999999999999999999999999863

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=1.1e-49  Score=352.98  Aligned_cols=202  Identities=31%  Similarity=0.448  Sum_probs=190.7

Q ss_pred             CceEEEcCCcc-ccCCccEEEEcCCCCCCCCc-----CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHH
Q psy17689         12 GVNVLTRLNYA-LSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVS   85 (216)
Q Consensus        12 ~~~v~~~~~~~-~~~daDivvitag~~~k~g~-----~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~   85 (216)
                      ..++..++|++ +++|||+||+++|.|++||+     +|+|++.+|++++++++++|.+++|+++++++|||+|++|+++
T Consensus        63 ~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~  142 (331)
T 1pzg_A           63 NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM  142 (331)
T ss_dssp             CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH
T ss_pred             CCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH
Confidence            45677778998 69999999999999999999     9999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHH
Q psy17689         86 WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEF  165 (216)
Q Consensus        86 ~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~  165 (216)
                      ++.+|||++||||+||.||++|+++++|+++|++|++|+++|||+||+++||+||+++++|+|+.+++++.  -++++++
T Consensus       143 ~~~~~~~~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~~--~~~~~~~  220 (331)
T 1pzg_A          143 CEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDG--VVTEKQL  220 (331)
T ss_dssp             HHHHCCCGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHH
T ss_pred             HHhcCCChhcEEeccchHHHHHHHHHHHHHhCCCHHHceEEEecCCCCCEeeeeecceECCEEHHHHhhcc--cCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999886431  1456778


Q ss_pred             HHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        166 GKLHTDVVNSAYEIIR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       166 ~~l~~~v~~~g~~ii~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      +++.++++++|++|++  +||+++||+|.++++|+++|++|+++++|||+++
T Consensus       221 ~~~~~~~~~~g~eii~~~~kgst~~~~a~a~~~ii~ai~~~~~~~~~~~v~~  272 (331)
T 1pzg_A          221 EEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYC  272 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHHHHHHHhccHHHHHhhcCCCccchHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            8999999999999999  7999999999999999999999999999999986

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=8.4e-49  Score=343.87  Aligned_cols=184  Identities=39%  Similarity=0.682  Sum_probs=169.1

Q ss_pred             eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCC
Q psy17689         14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPK   93 (216)
Q Consensus        14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~   93 (216)
                      ++..++||++++|||+||+++|.| +|||+|+|++.+|++|++++++++.+++|+++++++|||+|++|+++++.+|||+
T Consensus        65 ~i~~t~d~~~l~~aD~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~  143 (303)
T 2i6t_A           65 NVEISKDLSASAHSKVVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPA  143 (303)
T ss_dssp             TEEEESCGGGGTTCSEEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCG
T ss_pred             CeEEeCCHHHHCCCCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCH
Confidence            566678999999999999999997 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHH
Q psy17689         94 NRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVV  173 (216)
Q Consensus        94 ~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~  173 (216)
                      +||||+||.||++|+++++|+++|++|++|+++||||||+|++|+||+..       ++       +    .+++.++++
T Consensus       144 ~rviG~gt~Ld~~R~~~~la~~lgv~~~~v~~~v~G~Hg~s~~p~~s~~~-------~~-------~----~~~~~~~~~  205 (303)
T 2i6t_A          144 NRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQE-------EV-------V----SHTSQVQLS  205 (303)
T ss_dssp             GGEEECTTHHHHHHHHHHHHHTSCCTTGGGGEEEEBSCSSSCEEEEBCSS-------CC-------C----CHHHHHHHH
T ss_pred             HHeeCCCCCchHHHHHHHHHHHcCCChHHeEEEEecCCCCCccccccccc-------cc-------c----HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999841       11       1    145888899


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        174 NSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       174 ~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++|++|++.||+++||+|.++++|+++|++|+++++|||++++
T Consensus       206 ~~g~eii~~kGst~~~~a~a~~~i~~ai~~~~~~~~~vs~~~~  248 (303)
T 2i6t_A          206 NRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAK  248 (303)
T ss_dssp             HHHHTTSSSCCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred             HHHHHHHHccCchHHhHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence            9999999999999999999999999999999999999999864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=8e-47  Score=332.77  Aligned_cols=202  Identities=41%  Similarity=0.698  Sum_probs=189.9

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      ..+.. +|++++++||+||++++.|++||++|+|++.+|+++++++++.+.+++|+++++++|||+|++++++++.+|||
T Consensus        55 ~~i~~-~d~~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~  133 (319)
T 1a5z_A           55 ANIYA-GDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMD  133 (319)
T ss_dssp             CEEEE-CCGGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCC
T ss_pred             cEEEe-CCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCC
Confidence            34444 47888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||+|+||.||+.|+++++|+++|++|++|+++||||||++++|+||+++++|+|+.+|++... .++++.++++.+++
T Consensus       134 ~~rviG~~t~ld~~r~~~~la~~lgv~~~~v~~~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~v  212 (319)
T 1a5z_A          134 PRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKT  212 (319)
T ss_dssp             TTTEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHTTSS-SCCHHHHHHHHHHH
T ss_pred             hhhEEeeCccHHHHHHHHHHHHHhCcCHHHceEEEEeCCCCCcccchhhceECCEEHHHHhhccc-ccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876432 14567789999999


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++|++|++.||+++|++|.++++|+++|++|+++++|+|++++
T Consensus       213 ~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  256 (319)
T 1a5z_A          213 KRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLE  256 (319)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEES
T ss_pred             HHhhhhhhccCCchHHHHHHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            99999999999999999999999999999999999999999864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.6e-46  Score=332.20  Aligned_cols=207  Identities=17%  Similarity=0.199  Sum_probs=184.0

Q ss_pred             ccCCCCCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHH
Q psy17689          4 TNDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDIL   81 (216)
Q Consensus         4 ~~d~~~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~   81 (216)
                      ++|..+.....+..+++ +++++|||+||++||.|++||++|.|++.+|+++++++++++++++ |+++++++|||+|++
T Consensus        60 l~~~~~~~~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~  139 (329)
T 1b8p_A           60 IDDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN  139 (329)
T ss_dssp             HHTTTCTTEEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             HhhhcccccCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHH
Confidence            45544333345665666 5569999999999999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCCCC
Q psy17689         82 TYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE  159 (216)
Q Consensus        82 t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~  159 (216)
                      |+++++.+ |||++||+|. |.||+.|+++++|+++|++|++|++ +||||||+|++|+||+++++|+|+.++++.    
T Consensus       140 t~~~~~~~~~~p~~~v~g~-t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~----  214 (329)
T 1b8p_A          140 AYIAMKSAPSLPAKNFTAM-LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMIND----  214 (329)
T ss_dssp             HHHHHHTCTTSCGGGEEEC-CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCC----
T ss_pred             HHHHHHHcCCCCHHHEEEe-ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhcc----
Confidence            99999999 9999999766 9999999999999999999999997 589999999999999999999999988652    


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHcC-CCceEEEEeeeC
Q psy17689        160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAI-GLSIASLTYTLLNN-TNKIHAISTLIQ  216 (216)
Q Consensus       160 ~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~-a~a~~~ii~ail~~-~~~ilpvS~~l~  216 (216)
                       ++...+++.++++++|++|++.||.++|++ |.++++++++|++| +++++|||++++
T Consensus       215 -~~~~~~~i~~~v~~~g~eii~~kg~~~~~~~a~a~~~~~~ai~~~~~~~~~~~s~~~~  272 (329)
T 1b8p_A          215 -DAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD  272 (329)
T ss_dssp             -HHHHHHTHHHHHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECC
T ss_pred             -chhhHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence             111247899999999999999999988875 45899999999999 999999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1.3e-46  Score=331.17  Aligned_cols=197  Identities=21%  Similarity=0.352  Sum_probs=176.3

Q ss_pred             cccCCCCCCCceEEE---cCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689          3 TTNDHSSFKGVNVLT---RLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV   78 (216)
Q Consensus         3 ~~~d~~~~~~~~v~~---~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv   78 (216)
                      +++|..+.  ..+..   ++||++ ++|||+||+++|.|++||++|.|++.+|+++++++++.+++++|+++++++|||+
T Consensus        43 dL~~~~~~--~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv  120 (314)
T 1mld_A           43 DLSHIETR--ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV  120 (314)
T ss_dssp             HHTTSSSS--CEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred             HHhccCcC--ceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCc
Confidence            44555433  23443   368985 9999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHH----HHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC-CCCcccceeeeeECCeeccccC
Q psy17689         79 DILT----YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREVN  153 (216)
Q Consensus        79 d~~t----~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~~  153 (216)
                      |++|    +++++.++||++||||+ |.||+.|+++++|+++|++|++|+++||||| |+|++|+||+++    |+.+  
T Consensus       121 ~~~~~i~~~~~~~~~~~p~~rvig~-t~Ld~~r~~~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~----~~~~--  193 (314)
T 1mld_A          121 NSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCT----PKVD--  193 (314)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTSEEEC-CHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCB----SCCC--
T ss_pred             chhHHHHHHHHHHcCCCCcceEEEe-ecccHHHHHHHHHHHhCcChHhEEEEEccCCCCCcEeeecccCC----Cccc--
Confidence            9998    56778899999999999 9999999999999999999999999999999 899999999998    3222  


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHcC---CCceEEEEeee
Q psy17689        154 PAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNN---TNKIHAISTLI  215 (216)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~~---~~~ilpvS~~l  215 (216)
                            +++++++++.++++++|++|++.|   |+|+|++|.++++++++|++|   ++.++|| +++
T Consensus       194 ------~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~  254 (314)
T 1mld_A          194 ------FPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFV  254 (314)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEE
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEE-EEe
Confidence                  457889999999999999999966   889999999999999999999   4589999 554

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.8e-45  Score=318.96  Aligned_cols=194  Identities=24%  Similarity=0.446  Sum_probs=178.7

Q ss_pred             cCCccccCCccEEEEcCCCCCC----CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCC
Q psy17689         18 RLNYALSEGSRIVIVTAGVRQR----EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPK   93 (216)
Q Consensus        18 ~~~~~~~~daDivvitag~~~k----~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~   93 (216)
                      ++|++++++||+||++++.|++    ||++|+|++.+|+++++++++.+.+++|+++++++|||+|++++++++.+++|+
T Consensus        61 ~~d~~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~  140 (309)
T 1hyh_A           61 INDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPA  140 (309)
T ss_dssp             ESCGGGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCG
T ss_pred             eCCHHHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHHHHhcCCCH
Confidence            4688889999999999999999    999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHH
Q psy17689         94 NRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVV  173 (216)
Q Consensus        94 ~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~  173 (216)
                      +||+|+||.||+.|+++++++.++++++++++++|||||++++|+||+++++|+|+.+|.+     +++++|+++.++++
T Consensus       141 ~rvig~gt~ld~~r~~~~~a~~l~~~~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-----~~~~~~~~~~~~v~  215 (309)
T 1hyh_A          141 HKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLAD-----AGDIDLAAIEEEAR  215 (309)
T ss_dssp             GGEEECTTHHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTTTCEECTTTCEETTEEGGGC----------CCHHHHHHHHH
T ss_pred             HHEeecCccchHHHHHHHHHHHhCCChhheEEEEEeCCCCcEeeccccceECCEEHHHhcc-----CCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999854     34667899999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        174 NSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       174 ~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++|++|++.||+++|++|.++++++++|++|++.++|||++++
T Consensus       216 ~~g~~ii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  258 (309)
T 1hyh_A          216 KGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRD  258 (309)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred             HhHHHHHhccCCchHHHHHHHHHHHHHHHcCCCcEEEEEEEEC
Confidence            9999999999999999999999999999999999999999864

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=9.5e-45  Score=320.72  Aligned_cols=184  Identities=26%  Similarity=0.396  Sum_probs=172.4

Q ss_pred             cCCcc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH----HHHHHHHhcCCC
Q psy17689         18 RLNYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI----LTYVSWKLSGFP   92 (216)
Q Consensus        18 ~~~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~----~t~~~~~~sg~~   92 (216)
                      ++|++ +++|||+||+++|.|++||++|.|++..|+++++++++++.+++|+++++++|||+|+    +|+++++.+|||
T Consensus        67 t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p  146 (326)
T 1smk_A           67 QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYD  146 (326)
T ss_dssp             HHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCC
Confidence            44775 4999999999999999999999999999999999999999999999999999999999    777779999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC-CCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD  171 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~  171 (216)
                      ++||||+ |.||+.|+++++|+++|++|++|+++||||| |++++|+||++++.+            ++++++++++.++
T Consensus       147 ~~rviG~-~~Ld~~r~~~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~------------~~~~~~~~~~~~~  213 (326)
T 1smk_A          147 PKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS------------SFTQEEISYLTDR  213 (326)
T ss_dssp             TTSEEEC-CHHHHHHHHHHHHHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCC------------CCCHHHHHHHHHH
T ss_pred             cccEEEE-eehHHHHHHHHHHHHhCcChhheEEEEecccCCceEEEecccCeecC------------cCCHHHHHHHHHH
Confidence            9999999 9999999999999999999999999999999 999999999998742            1457789999999


Q ss_pred             HHHHHHHHHHhh---CCCChhHHHHHHHHHHHH---HcCCCceEEEEeee
Q psy17689        172 VVNSAYEIIRLK---GYTSWAIGLSIASLTYTL---LNNTNKIHAISTLI  215 (216)
Q Consensus       172 v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ai---l~~~~~ilpvS~~l  215 (216)
                      ++++|++|++.|   |+++||+|.++++++++|   ++|+++++||| ++
T Consensus       214 v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~ai~~~~~~~~~v~~~~-~~  262 (326)
T 1smk_A          214 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECA-FV  262 (326)
T ss_dssp             HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHHTCSCEEEEE-EE
T ss_pred             HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHhCCCCeEEEEE-ee
Confidence            999999999987   899999999999999999   99999999998 44

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=3.3e-43  Score=308.99  Aligned_cols=202  Identities=28%  Similarity=0.416  Sum_probs=189.6

Q ss_pred             ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689         13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP   92 (216)
Q Consensus        13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~   92 (216)
                      .++..++|++++++||+||+++|.|++||++|+|++.+|.++++++++++.+++|+++++++|||++++++.+++.+++|
T Consensus        59 ~~i~~t~d~~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~  138 (317)
T 2ewd_A           59 SKVIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLP  138 (317)
T ss_dssp             CCEEEESCGGGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCC
T ss_pred             cEEEECCCHHHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCC
Confidence            45666688988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689         93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV  172 (216)
Q Consensus        93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v  172 (216)
                      ++||+|+||.+|+.|+++++|+++|+++++++++|+|+||++++|+||.++++|+|+.+++++.  -.++++++++.+++
T Consensus       139 ~~rviG~~t~ld~~r~~~~la~~lg~~~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g--~~~~~~id~~~~~~  216 (317)
T 2ewd_A          139 HNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQG--LITQEQIDEIVCHT  216 (317)
T ss_dssp             GGGEEESCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred             HHHEEeccCcHHHHHHHHHHHHHhCcChhhceEEEEecCCCceeEEeeccccCCEEHHHHHhcc--CCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998886531  14678889999999


Q ss_pred             HHHHHHHHH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        173 VNSAYEIIR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       173 ~~~g~~ii~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +.+++++++  +||+++|++|.++++++++|++|+++++|+|++.+
T Consensus       217 ~~~~~ei~~~~g~g~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~  262 (317)
T 2ewd_A          217 RIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCS  262 (317)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEES
T ss_pred             HhhHHHHHHhhcCCchHHHHHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence            999999999  58899999999999999999999999999999863

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=4.1e-38  Score=286.72  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=165.1

Q ss_pred             ceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHH--------------------HHHhHHHHHHHHHHHHhhCCCeEE
Q psy17689         13 VNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSL--------------------VERNVNIFKGIIPNIVKYSPQCTL   71 (216)
Q Consensus        13 ~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~~p~~ii   71 (216)
                      .++..++|| ++++|||+||+|+|++++||++|+++                    +.+|+++++++++.|+++| +|++
T Consensus        59 ~~v~~t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~l  137 (417)
T 1up7_A           59 FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATI  137 (417)
T ss_dssp             SEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEE
T ss_pred             eEEEEeCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEE
Confidence            567777897 67999999999999999999999643                    6899999999999999999 9999


Q ss_pred             EEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-----------cCCCCccccee
Q psy17689         72 LIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-----------EHGDSSVPVWS  140 (216)
Q Consensus        72 ivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~HGds~vp~~S  140 (216)
                      |++|||+|++|+++++.+  |++||||+|+.++  |+++++|+.+|++|++|+++|+|           +||++++|.||
T Consensus       138 in~TNPvdi~t~a~~k~~--p~~rviG~c~~~~--r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~d~~p~~~  213 (417)
T 1up7_A          138 VNFTNPSGHITEFVRNYL--EYEKFIGLCNVPI--NFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVF  213 (417)
T ss_dssp             EECSSSHHHHHHHHHHTT--CCSSEEECCSHHH--HHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHH
T ss_pred             EEeCChHHHHHHHHHHhC--CCCCEEEeCCCHH--HHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCcEehhhHH
Confidence            999999999999999997  8889999999985  99999999999999999999999           99999999999


Q ss_pred             ee---eECC---eecc-ccCccCCC---C------CCHHHHHHH---------HHHHHHHHHHHH----------HhhCC
Q psy17689        141 GV---NVAG---VNLR-EVNPAIGT---E------GDTEEFGKL---------HTDVVNSAYEII----------RLKGY  185 (216)
Q Consensus       141 ~~---~v~g---~~l~-~~~~~~~~---~------~~~~~~~~l---------~~~v~~~g~~ii----------~~Kg~  185 (216)
                      ..   +++|   .|+. ++++..+.   +      ..++..+++         .+++++++++++          +.||+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~  293 (417)
T 1up7_A          214 ENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGG  293 (417)
T ss_dssp             HHHTTC---CCTTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTT
T ss_pred             HHHHHhhCCCcCCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCC
Confidence            96   6655   6772 33211100   0      013333444         588899999999          56777


Q ss_pred             CChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        186 TSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       186 t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      |  ++|.++++|++||++|+++++|||++.+
T Consensus       294 t--~~~~~a~~ii~AI~~d~~~~~~vsv~n~  322 (417)
T 1up7_A          294 S--MYSTAAAHLIRDLETDEGKIHIVNTRNN  322 (417)
T ss_dssp             T--THHHHHHHHHHHHHSSSCEEEEEEEECT
T ss_pred             c--HHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence            7  5599999999999999999999999863

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=3e-36  Score=263.30  Aligned_cols=204  Identities=41%  Similarity=0.719  Sum_probs=188.0

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGF   91 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~   91 (216)
                      ...+..+++++++++||+||++++.|++||++|.|++.+|+++++++++.+++++|++++++++||++++++++++.+++
T Consensus        61 ~~~v~~~~~~~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~~~~~~~  140 (319)
T 1lld_A           61 TVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGL  140 (319)
T ss_dssp             TCEEEEESCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTC
T ss_pred             CeEEEeCCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHhcCC
Confidence            34555556888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCC-CCHHHHHHHHH
Q psy17689         92 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE-GDTEEFGKLHT  170 (216)
Q Consensus        92 ~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~-~~~~~~~~l~~  170 (216)
                      |++||+|.||.+|+.|++..+++++++++.+++++++|+||++++|+||++.++|.|+.++....+.- .+++.++++.+
T Consensus       141 ~~~~vig~~~~l~~~r~~~~~a~~~~v~~~~v~~~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~  220 (319)
T 1lld_A          141 PENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQ  220 (319)
T ss_dssp             CTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHH
T ss_pred             CHHHEeeccccHhHHHHHHHHHHHhCCCHHHeEEEEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887543211 23444788999


Q ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        171 DVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       171 ~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++++.+++|++.||.+.|++|.+.++|+++|+++++.++|+|+++
T Consensus       221 ~~~~e~~~v~~~~G~~~~~~a~~~~sm~~di~~~~~~ei~~s~~~  265 (319)
T 1lld_A          221 EVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSML  265 (319)
T ss_dssp             HHHHHHHHHHTSCCSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred             HHHHhhHhhhhCCCCchHHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            999999999999999999999999999999999999999999876

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=1.7e-36  Score=266.93  Aligned_cols=196  Identities=17%  Similarity=0.183  Sum_probs=177.7

Q ss_pred             eEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhc-C
Q psy17689         14 NVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLS-G   90 (216)
Q Consensus        14 ~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~s-g   90 (216)
                      .+..+.+ +++++|+|+||.+||.+++||++|.+++..|+.+++++++++++++ |+++++++|||+|+++++.++.+ +
T Consensus        67 di~~~~~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~  146 (327)
T 1y7t_A           67 GLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPG  146 (327)
T ss_dssp             EEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTT
T ss_pred             CeEeccChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCC
Confidence            4444455 4569999999999999999999999999999999999999999997 99999999999999999999988 8


Q ss_pred             CCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHH
Q psy17689         91 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLH  169 (216)
Q Consensus        91 ~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~  169 (216)
                      +||+++.|. |.||+.|+++.+++++|+++..++. +|+|+||++++|.|+++.++|+|+.+++++      +..++++.
T Consensus       147 ~~p~~~yg~-tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~------~~~~~~~~  219 (327)
T 1y7t_A          147 LNPRNFTAM-TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM------EWYEKVFI  219 (327)
T ss_dssp             SCGGGEEEC-CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH------HHHHHTHH
T ss_pred             CChhheecc-chHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc------hhHHHHHH
Confidence            999999877 9999999999999999999999996 699999999999999999999999987631      22258999


Q ss_pred             HHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHcC--CCceEEEEeeeC
Q psy17689        170 TDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNN--TNKIHAISTLIQ  216 (216)
Q Consensus       170 ~~v~~~g~~ii~~Kg~t~~~-~a~a~~~ii~ail~~--~~~ilpvS~~l~  216 (216)
                      ++++++|++|++.||.++|+ +|.|+++++++|++|  +++++|||++++
T Consensus       220 ~~v~~~g~~ii~~kg~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~  269 (327)
T 1y7t_A          220 PTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQ  269 (327)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECS
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEec
Confidence            99999999999999988886 677999999999999  799999999864

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.4e-37  Score=285.64  Aligned_cols=200  Identities=15%  Similarity=0.168  Sum_probs=165.7

Q ss_pred             CCceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHH--------------------HHHhHHHHHHHHHHHHhhCCCe
Q psy17689         11 KGVNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSL--------------------VERNVNIFKGIIPNIVKYSPQC   69 (216)
Q Consensus        11 ~~~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~~p~~   69 (216)
                      .+.++..++|+ ++++|||+||+++|.+++||++|+++                    +.+|+++++++++.|+++||+|
T Consensus        67 ~~~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a  146 (450)
T 1s6y_A           67 VPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDA  146 (450)
T ss_dssp             CCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCcEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCe
Confidence            45677778897 57999999999999999999999855                    8999999999999999999999


Q ss_pred             EEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-----------cCCCCcccc
Q psy17689         70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-----------EHGDSSVPV  138 (216)
Q Consensus        70 iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~HGds~vp~  138 (216)
                      ++|++|||+|++|+++++.+  |++||||+|+.++  |+++++|+.+|++|++|+++|+|           +||++++|.
T Consensus       147 ~ii~~tNPvdivT~a~~k~~--p~~rViG~c~~~~--r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~d~~p~  222 (450)
T 1s6y_A          147 WLINFTNPAGMVTEAVLRYT--KQEKVVGLCNVPI--GMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGVEVTEK  222 (450)
T ss_dssp             EEEECSSSHHHHHHHHHHHC--CCCCEEECCSHHH--HHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTEECHHH
T ss_pred             EEEEeCCcHHHHHHHHHHhC--CCCCEEEeCCcHH--HHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCcCchHh
Confidence            99999999999999999997  8889999988884  99999999999999999999999           999999999


Q ss_pred             eeeeeEC----C--------eecc------------ccCccCCCCCCHH-------------HHHHHHHHHHHHHHHHH-
Q psy17689        139 WSGVNVA----G--------VNLR------------EVNPAIGTEGDTE-------------EFGKLHTDVVNSAYEII-  180 (216)
Q Consensus       139 ~S~~~v~----g--------~~l~------------~~~~~~~~~~~~~-------------~~~~l~~~v~~~g~~ii-  180 (216)
                      ||...++    |        .|+.            +|++...  ..++             .+.++.+++++++++++ 
T Consensus       223 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~  300 (450)
T 1s6y_A          223 VIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYF--QTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYK  300 (450)
T ss_dssp             HHHHHSCC------------CCCCHHHHHHHCSBCCGGGHHHH--SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHhhhccccccccccccCccHHHHHHhcCCccchhhhhhc--CCHHHHHhhhccccccchHHHHHHHHHHHHHHHHh
Confidence            9986554    3        2442            1211000  0012             12356788999999999 


Q ss_pred             ----HhhC-----CCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        181 ----RLKG-----YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       181 ----~~Kg-----~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                          +.|+     .+++++|.++++|++||++|+++++|||++.+
T Consensus       301 ~~~~~~k~~~~~~~~~~~~~~~a~~ii~AI~~d~~~~~~vsv~n~  345 (450)
T 1s6y_A          301 DPNLAIKPPQLEKRGGAYYSDAACSLISSIYNDKRDIQPVNTRNN  345 (450)
T ss_dssp             CC-----------CCSCCHHHHHHHHHHHHHHTCCCEEEEEEECT
T ss_pred             hhccccccchhhcccchHHHHHHHHHHHHHHcCCCeEEEEEeecC
Confidence                6554     56678899999999999999999999999863

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=3.1e-35  Score=271.29  Aligned_cols=202  Identities=15%  Similarity=0.167  Sum_probs=158.6

Q ss_pred             CCceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHH--------------------HHHhHHHHHHHHHHHHhhCCCe
Q psy17689         11 KGVNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSL--------------------VERNVNIFKGIIPNIVKYSPQC   69 (216)
Q Consensus        11 ~~~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~~p~~   69 (216)
                      ...++..++|+ ++++|||+||+++|.+++||++|+++                    +.+|+++++++++.|+++||+|
T Consensus        86 ~~~~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A  165 (472)
T 1u8x_X           86 PDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDA  165 (472)
T ss_dssp             TTSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCEEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCe
Confidence            35677778898 56999999999999999999999555                    8999999999999999999999


Q ss_pred             EEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCC-CceeEEEEc-----------c-CCCCcc
Q psy17689         70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVYGFIIG-----------E-HGDSSV  136 (216)
Q Consensus        70 iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~-~~v~~~v~G-----------~-HGds~v  136 (216)
                      ++|++|||+|++|+++++.+  |++||||+|+.++  |+++++|+.+|++| ++|+++|+|           + ||++++
T Consensus       166 ~ii~~TNPvdi~T~~~~k~~--p~~rViG~c~~~~--r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~d~~  241 (472)
T 1u8x_X          166 WMLNYSNPAAIVAEATRRLR--PNSKILNICDMPV--GIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLM  241 (472)
T ss_dssp             EEEECCSCHHHHHHHHHHHS--TTCCEEECCSHHH--HHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCCBCH
T ss_pred             EEEEeCCcHHHHHHHHHHhC--CCCCEEEeCCcHH--HHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCCEeh
Confidence            99999999999999999997  8889999988885  99999999999998 999999999           9 999999


Q ss_pred             cceeeeeE-CC-e----------ecc-ccCccCC-----CCCCHH---HH----HHHHH----------HHHH----HHH
Q psy17689        137 PVWSGVNV-AG-V----------NLR-EVNPAIG-----TEGDTE---EF----GKLHT----------DVVN----SAY  177 (216)
Q Consensus       137 p~~S~~~v-~g-~----------~l~-~~~~~~~-----~~~~~~---~~----~~l~~----------~v~~----~g~  177 (216)
                      |.||...+ +| .          |+. ++++..+     .++-+.   .|    +++.+          ++++    ..+
T Consensus       242 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~  321 (472)
T 1u8x_X          242 PKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIF  321 (472)
T ss_dssp             HHHHHHHHHHSSCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTT
T ss_pred             HhHHHHHHhcCCCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99998665 34 1          111 1110000     000000   00    12212          2333    333


Q ss_pred             HHHH-h--hC---CCCh---hHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        178 EIIR-L--KG---YTSW---AIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       178 ~ii~-~--Kg---~t~~---~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++++ .  ||   .+.|   ++|.++++|++||++|+++++|||++.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~AI~~d~~~v~~vsv~n~  369 (472)
T 1u8x_X          322 SQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTGERMLLIVENN  369 (472)
T ss_dssp             TTHHHHHHHTSCCSCSSCCCTTTHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred             HHHHhhhhcCCcccccccccHHHHHHHHHHHHHhcCCCeEEEEEeecC
Confidence            3333 4  77   5555   9999999999999999999999999863

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.93  E-value=1e-25  Score=206.64  Aligned_cols=132  Identities=23%  Similarity=0.294  Sum_probs=118.9

Q ss_pred             CceEEEcCCcc-ccCCccEEEEcCC------------CCCCCCcCHH----------HHHHHhHHHHHHHHHHHHhhCCC
Q psy17689         12 GVNVLTRLNYA-LSEGSRIVIVTAG------------VRQREGESRL----------SLVERNVNIFKGIIPNIVKYSPQ   68 (216)
Q Consensus        12 ~~~v~~~~~~~-~~~daDivvitag------------~~~k~g~~r~----------dll~~N~~i~~~i~~~i~~~~p~   68 (216)
                      ..++..|+|++ +++|||+||++++            +|+|+|+.|.          ....+|+++++++++.|+++||+
T Consensus        60 ~~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~  139 (450)
T 3fef_A           60 RWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPE  139 (450)
T ss_dssp             CEEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCC
Confidence            45677888986 5999999999985            6999999776          45559999999999999999999


Q ss_pred             eEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHh----C---CCCCceeEEEEc-cCCCCccccee
Q psy17689         69 CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL----G---LSPESVYGFIIG-EHGDSSVPVWS  140 (216)
Q Consensus        69 ~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l----~---v~~~~v~~~v~G-~HGds~vp~~S  140 (216)
                      |++|++|||+|++|+++++.  +|++||||+++.+  .++++.+|+.|    |   +++++++..+.| ||    +.+|+
T Consensus       140 a~~i~~tNPvdi~t~~~~k~--~p~~rviG~C~~~--~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH----~~w~~  211 (450)
T 3fef_A          140 SWVINYTNPMSVCTRVLYKV--FPGIKAIGCCHEV--FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH----FTWIT  211 (450)
T ss_dssp             SEEEECCSSHHHHHHHHHHH--CTTCEEEECCSHH--HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT----EEEEE
T ss_pred             eEEEEecCchHHHHHHHHHH--CCCCCEEEeCCcH--HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC----eEeEE
Confidence            99999999999999999998  7999999997766  78999999999    5   779999999999 99    99999


Q ss_pred             eeeECCeeccc
Q psy17689        141 GVNVAGVNLRE  151 (216)
Q Consensus       141 ~~~v~g~~l~~  151 (216)
                      +++++|+++..
T Consensus       212 ~~~~~G~d~~p  222 (450)
T 3fef_A          212 KASYRHIDLLP  222 (450)
T ss_dssp             EEEETTEEHHH
T ss_pred             EEEECCEEChH
Confidence            99999998775

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.91  E-value=4.1e-25  Score=203.98  Aligned_cols=128  Identities=23%  Similarity=0.185  Sum_probs=115.8

Q ss_pred             CceEEEcCCc-cccCCccEEEEcCCC------------CCCCCcCH--HH------------HHHHhHHHHHHHHHHHHh
Q psy17689         12 GVNVLTRLNY-ALSEGSRIVIVTAGV------------RQREGESR--LS------------LVERNVNIFKGIIPNIVK   64 (216)
Q Consensus        12 ~~~v~~~~~~-~~~~daDivvitag~------------~~k~g~~r--~d------------ll~~N~~i~~~i~~~i~~   64 (216)
                      ..++..++|+ ++++|||+||+++|.            |+|+|+.|  .|            ++.+|+++++++++.|++
T Consensus        62 ~~~I~~ttD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~  141 (480)
T 1obb_A           62 DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEK  141 (480)
T ss_dssp             CCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCHHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHH
Confidence            5677778898 579999999999987            56777766  44            488999999999999999


Q ss_pred             hCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeee
Q psy17689         65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVN  143 (216)
Q Consensus        65 ~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~  143 (216)
                      +||+|++|++|||+|++|+++++   +|++||||+||.+|+  +++++ +.+|++|++|+++|+| ||    +.+|.+.+
T Consensus       142 ~~P~A~ii~~TNPvdi~t~~~~k---~p~~rviG~c~~~~~--~~~~l-~~lgv~~~~v~~~v~GlNH----~~w~~~~~  211 (480)
T 1obb_A          142 LSPKAWYLQAANPIFEGTTLVTR---TVPIKAVGFCHGHYG--VMEIV-EKLGLEEEKVDWQVAGVNH----GIWLNRFR  211 (480)
T ss_dssp             HCTTCEEEECSSCHHHHHHHHHH---HSCSEEEEECSGGGH--HHHHH-HHTTCCGGGEEEEEEEETT----EEEEEEEE
T ss_pred             HCCCeEEEEeCCcHHHHHHHHHH---CCCCcEEecCCCHHH--HHHHH-HHhCCCHHHceEEEEeecc----hhhhhhee
Confidence            99999999999999999999999   789999999999996  78999 9999999999999999 99    88999999


Q ss_pred             ECCeec
Q psy17689        144 VAGVNL  149 (216)
Q Consensus       144 v~g~~l  149 (216)
                      .+|+++
T Consensus       212 ~~G~D~  217 (480)
T 1obb_A          212 YNGGNA  217 (480)
T ss_dssp             ETTEEC
T ss_pred             eCCeEc
Confidence            999775

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.86  E-value=1.2e-21  Score=180.86  Aligned_cols=129  Identities=23%  Similarity=0.246  Sum_probs=111.0

Q ss_pred             CceEEEcCCccc-cCCccEEEEcCCC-------------------CCCCCcCHHHHHH---------------HhHHHHH
Q psy17689         12 GVNVLTRLNYAL-SEGSRIVIVTAGV-------------------RQREGESRLSLVE---------------RNVNIFK   56 (216)
Q Consensus        12 ~~~v~~~~~~~~-~~daDivvitag~-------------------~~k~g~~r~dll~---------------~N~~i~~   56 (216)
                      ..++..++|+++ ++|||+||+|+|.                   |+|+|++|.++.+               +|++++.
T Consensus        61 ~~~i~~t~d~~eAl~gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~  140 (477)
T 3u95_A           61 PVKVVKTESLDEAIEGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLAL  140 (477)
T ss_dssp             CCEEEEESCHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHH
T ss_pred             CeEEEEeCCHHHHhCCCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHH
Confidence            567888899875 9999999999975                   4588888877643               5899999


Q ss_pred             HHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCc
Q psy17689         57 GIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSS  135 (216)
Q Consensus        57 ~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~  135 (216)
                      ++++.|+++||+|++|++|||++++|+.+++.+|.   |++|+ |  |+.+....+++.||+++++|+..+.| ||    
T Consensus       141 ~i~~~i~~~~P~A~~in~tNP~~i~t~a~~~~~~~---k~vGl-C--~~~~~~~~~~~~Lg~~~~~v~~~~~GlNH----  210 (477)
T 3u95_A          141 EIAEKMKKMAPKAYLMQTANPVFEITQAVRRWTGA---NIIGF-C--HGVAGVYEVFERLGLDPEEVDWQVAGVNH----  210 (477)
T ss_dssp             HHHHHHHHHCTTCEEEECSSCHHHHHHHHHHHHCC---CEEEE-C--CGGGHHHHHHHHTTCCGGGEEEEEEEETT----
T ss_pred             HHHHHHHhhCCCeEEEEecChHHHHHHHHHHhCCC---CeEEE-C--CCHHHHHHHHHHhCCCHHHcEEEEeecCC----
Confidence            99999999999999999999999999999999885   79999 4  34344566788999999999999999 88    


Q ss_pred             ccceeeeeECCeecc
Q psy17689        136 VPVWSGVNVAGVNLR  150 (216)
Q Consensus       136 vp~~S~~~v~g~~l~  150 (216)
                      +.+|..++..|+++.
T Consensus       211 ~~w~~~~~~~G~D~~  225 (477)
T 3u95_A          211 GIWLNRFRYRGKDAY  225 (477)
T ss_dssp             EEEEEEEEETTEECH
T ss_pred             CeeeeeeeecCCccc
Confidence            778899999998753

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=85.35  E-value=0.35  Score=42.85  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=42.6

Q ss_pred             EEEcCCcc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEE-EcCchhHHHHHHHHh
Q psy17689         15 VLTRLNYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLI-VSNPVDILTYVSWKL   88 (216)
Q Consensus        15 v~~~~~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiiv-vtNPvd~~t~~~~~~   88 (216)
                      +..+++++ .+++||+||++...|..++..+.|+     ..+.+.++.+.+..|+.+++. .|||++....+....
T Consensus        61 l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~  131 (402)
T 1dlj_A           61 IKATLDSKAAYKEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKF  131 (402)
T ss_dssp             EEEESCHHHHHHHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHT
T ss_pred             EEEeCCHHHHhcCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHh
Confidence            45566775 5899999999987663222222221     233344444444457777665 799999877666543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=85.02  E-value=0.55  Score=42.70  Aligned_cols=66  Identities=6%  Similarity=0.138  Sum_probs=41.1

Q ss_pred             EEEcCCcc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEE-cCchhHH
Q psy17689         15 VLTRLNYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIV-SNPVDIL   81 (216)
Q Consensus        15 v~~~~~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivv-tNPvd~~   81 (216)
                      +..++|++ .+++||+||++.+.|.+++.+|.+ -..+...+.+.++.|.++- |+.+++.. |+|+...
T Consensus        74 l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~  142 (481)
T 2o3j_A           74 LFFSSDIPKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA  142 (481)
T ss_dssp             EEEESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred             EEEECCHHHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH
Confidence            55677874 599999999999888654433222 1122345566667777774 44444432 7887654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=82.28  E-value=0.099  Score=45.67  Aligned_cols=17  Identities=76%  Similarity=1.314  Sum_probs=14.2

Q ss_pred             EEEEcCchhHHHHHHHH
Q psy17689         71 LLIVSNPVDILTYVSWK   87 (216)
Q Consensus        71 iivvtNPvd~~t~~~~~   87 (216)
                      -.++|||+|+|||++||
T Consensus       233 a~~~~~~~~~~~~~~~~  249 (330)
T 3ldh_A          233 GLVVSNPVDVLTYVAWK  249 (330)
T ss_dssp             HHTTHHHHTTSSSCSCT
T ss_pred             eeeccCccchhhhhhhH
Confidence            34678999999999887

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=80.69  E-value=1.9  Score=37.24  Aligned_cols=47  Identities=9%  Similarity=0.106  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHh---cCCCCCCEEeec
Q psy17689         53 NIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL---SGFPKNRVIGSG  100 (216)
Q Consensus        53 ~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~---sg~~~~~viG~G  100 (216)
                      +-++++...+++.+++.+|+-.| |.+++..++.+.   -|+|+++|||+-
T Consensus       146 ~~~~~l~~~l~~~G~~v~ivSas-~~~~v~~~a~~~~~~ygIp~e~ViG~~  195 (327)
T 4as2_A          146 SGQRELYNKLMENGIEVYVISAA-HEELVRMVAADPRYGYNAKPENVIGVT  195 (327)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEE-EHHHHHHHHTCGGGSCCCCGGGEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHhhcccccCCCHHHeEeee
Confidence            34788888999999998888777 888888888764   699999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	4e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	6e-25
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	9e-25
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	2e-24
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	4e-24
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	5e-24
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	3e-23
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	5e-23
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	5e-23
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	6e-23
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	7e-23
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	7e-23
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	1e-22
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	8e-22
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	1e-21
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	2e-21
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	3e-21
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	4e-21
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	4e-21
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	1e-20
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	2e-20
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	2e-20
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	3e-20
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	6e-20
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	6e-20
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-19
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	2e-19
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	2e-19
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	5e-19
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	7e-19
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	7e-19
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	3e-18
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	3e-18
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	4e-18
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	6e-18
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	8e-18
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	3e-17
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-16
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	2e-16
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	3e-16
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	4e-16
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	6e-16
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	6e-15
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	1e-14
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	2e-14
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-13
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	3e-13

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 93.5 bits (232), Expect = 4e-25
 Identities = 37/81 (45%), Positives = 58/81 (71%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +  +   + +V++TAG RQ+ G+SRL LV   VNI K I+PN+VK +P    ++++NPVD
Sbjct: 63  DPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 122

Query: 80  ILTYVSWKLSGFPKNRVIGSG 100
           I T+V+ KL+G P+N++ GSG
Sbjct: 123 IATHVAQKLTGLPENQIFGSG 143

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 93.6 bits (232), Expect = 6e-25
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 1   VLTTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGII 59
            +  N    F    V +   +Y     + +V++ AG  Q+ GE+RL LV++N+ IF+ I+
Sbjct: 48  AMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIV 107

Query: 60  PNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100
            +++    Q   L+ +NPVDILTY +WK SG P  RVIGSG
Sbjct: 108 ESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSG 148

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 92.8 bits (230), Expect = 9e-25
 Identities = 41/100 (41%), Positives = 60/100 (60%)

Query: 1   VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
            +  N    F G   L   +Y+  +   +++VTAG  ++ GE+RL L ++NV I K +  
Sbjct: 43  AMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 102

Query: 61  NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100
           NI+KY     +L+VSNPVDI+TY+  K SG P  +VIGSG
Sbjct: 103 NIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSG 142

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.0 bits (230), Expect = 2e-24
 Identities = 61/113 (53%), Positives = 86/113 (76%)

Query: 99  SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158
           SG NLDS RFR L+ +KLG++P S +G+++GEHGDSSVP+WSGVNVAGV L+ +NPAIGT
Sbjct: 1   SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGT 60

Query: 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAI 211
           + + + +  +H  VV   YE++ +KGYTSWAIGLS+  L  ++L N  ++H +
Sbjct: 61  DKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPV 113

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 4e-24
 Identities = 69/111 (62%), Positives = 92/111 (82%)

Query: 99  SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158
           SG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VWSGVNVAGV+L+E+NP +GT
Sbjct: 1   SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGT 60

Query: 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
           + D+E + ++H  VV SAYE+I+LKGYT+WAIGLS+A L  ++L N ++IH
Sbjct: 61  DNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIH 111

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 90.9 bits (225), Expect = 5e-24
 Identities = 43/99 (43%), Positives = 59/99 (59%)

Query: 2   LTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPN 61
           L   D  +F     +    Y+  + + +V++TAG  Q+ GESRL LV +N+NI   I+  
Sbjct: 48  LDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKP 107

Query: 62  IVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100
           +V        L+ +NPVDILTY +WK SGFPK RVIGSG
Sbjct: 108 VVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSG 146

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.3 bits (221), Expect = 3e-23
 Identities = 43/79 (54%), Positives = 61/79 (77%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y +S  S++VI+TAG R   G++RL L++RNV I K I+P +++ SP C +++V+NPVD
Sbjct: 81  DYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD 140

Query: 80  ILTYVSWKLSGFPKNRVIG 98
           ILTYV WK+SGFP  RVIG
Sbjct: 141 ILTYVVWKISGFPVGRVIG 159

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.2 bits (218), Expect = 5e-23
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 8   SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP 67
           + F     +   +YA  +GS +VIV AGV Q+ GE+RL L+ RN  + K I  N+ KY+P
Sbjct: 49  TPFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP 108

Query: 68  QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99
              +++V+NPVD+LTY   K SG    +V GS
Sbjct: 109 DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 88.2 bits (218), Expect = 5e-23
 Identities = 36/79 (45%), Positives = 55/79 (69%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +YA +  S IVI+TAG+ ++ G +R  L+ +N  I K +  NI+K+S    +++VSNP+D
Sbjct: 63  DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122

Query: 80  ILTYVSWKLSGFPKNRVIG 98
           I+T+V+W  SG PK RVIG
Sbjct: 123 IMTHVAWVRSGLPKERVIG 141

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 88.7 bits (219), Expect = 6e-23
 Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           TNLDS R R L+AQ+ G++ ++V+ +I GEHGDS VP+W    + GV + +  P  G + 
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 161 DTE-EFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
               +  ++H +V N+AY+II  KG T++AIG+S   +   +L++TN+I 
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRIL 110

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 7e-23
 Identities = 57/89 (64%), Positives = 75/89 (84%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
            +   ++   +Y+++  S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C
Sbjct: 72  LQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131

Query: 70  TLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
            +++VSNPVDILTYV+WKLSG PK+RVIG
Sbjct: 132 IIIVVSNPVDILTYVTWKLSGLPKHRVIG 160

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 88.7 bits (219), Expect = 7e-23
 Identities = 49/116 (42%), Positives = 72/116 (62%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           T LDS+RFR LL++KLG+  ++V+G+IIGEHGDS +P+WS  ++AG N+ E         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             E+  K+  DV  +   II+ KG T + I +SI ++  TLL N N I  + T+I 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 116

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 87.3 bits (216), Expect = 1e-22
 Identities = 24/94 (25%), Positives = 49/94 (52%)

Query: 5   NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
           N   ++     + +  Y  + GS +V++TAG+ ++ G++R+ L   N  I + I  ++ +
Sbjct: 49  NHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDE 108

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
           ++     L  SNPVD+L    ++     + +VIG
Sbjct: 109 HNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIG 142

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 85.1 bits (210), Expect = 8e-22
 Identities = 35/79 (44%), Positives = 56/79 (70%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           +Y+L +GS I++VTAG+ ++ G +RL L  +N  I K I   IV+ +P+  +L+V+NP+D
Sbjct: 63  DYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122

Query: 80  ILTYVSWKLSGFPKNRVIG 98
           ++TY+ WK SG P+N V G
Sbjct: 123 VMTYIMWKESGKPRNEVFG 141

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 84.4 bits (208), Expect = 1e-21
 Identities = 20/96 (20%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 8   SSFKGVNVLTRLNYALSEGSRIVIVTAGV----RQREGESRLSLVERNVNIFKGIIPNIV 63
           ++ +    +   ++A    + +VI T G     +      R + ++   ++ + +  N+ 
Sbjct: 51  ANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK 110

Query: 64  KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99
           +      L+++SNPVD++T +   ++GFP ++VIG+
Sbjct: 111 ESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGT 146

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 84.8 bits (209), Expect = 2e-21
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 25  EGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
            G+ +VIVTAG  +  G+S     R  L+  N  I   I  +I K  P   +++V+NPVD
Sbjct: 70  AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD 129

Query: 80  ILTYVSWKLSGFPKNRVIGSG 100
           ++  +  + SG PKN++IG G
Sbjct: 130 VMVQLLHQHSGVPKNKIIGLG 150

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 84.0 bits (207), Expect = 3e-21
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 21  YALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
            A   G+  VIVTAG+ +  G+      R  L+  N  I + I  NI KY P+  +++V+
Sbjct: 71  EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130

Query: 76  NPVDILTYVSWKLSGFPKNRVIG 98
           NP+D +  V  + SG P N + G
Sbjct: 131 NPLDCMVKVMCEASGVPTNMICG 153

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.1 bits (207), Expect = 4e-21
 Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           GT LD+ R R L+AQ  G SP SV+ ++IGEHGDS VPVWSG  + G+ L+ +   +  +
Sbjct: 1   GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQ-VCQK 59

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            D++           +AYEII  KG T +AI L++A +  ++  +  ++  +S  ++
Sbjct: 60  CDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLE 116

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 83.7 bits (206), Expect = 4e-21
 Identities = 60/111 (54%), Positives = 82/111 (73%), Gaps = 3/111 (2%)

Query: 99  SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158
           SG NLDS RFR L+ ++LG+   S +G++IGEHGDS   VWSG+NVA + L  ++   GT
Sbjct: 1   SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLD---GT 57

Query: 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
             D +++ KLH DVV+SAYE+I+LKGYTSWAIGLS+A L  T++ N  ++H
Sbjct: 58  NKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVH 108

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 82.3 bits (203), Expect = 1e-20
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           G  LDS R +  L      +      +IIGEHGDS     S  +  G    E        
Sbjct: 1   GNQLDSQRLKERLYNAGARNIRR--AWIIGEHGDSMFVAKSLADFDGEVDWEAV------ 52

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
                      DV   A E+I+ KG T +   ++I  +   ++ +T +I   S ++Q
Sbjct: 53  ---------ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQ 100

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 81.6 bits (201), Expect = 2e-20
 Identities = 31/79 (39%), Positives = 52/79 (65%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           NYA +  S +++VT+G  ++ G SR  L++ N +I +  I      SP   +++V+NP+D
Sbjct: 63  NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 122

Query: 80  ILTYVSWKLSGFPKNRVIG 98
            +TY++ ++SGFPK RVIG
Sbjct: 123 AMTYLAAEVSGFPKERVIG 141

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 82.2 bits (202), Expect = 2e-20
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           T+LDS R RV L ++  + P SV  +I+GEHGDS    +S   +    +R+V    G   
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGV-- 58

Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
             ++  KL   V N AY+II LKG T + IG ++  ++  +L + N +  +  
Sbjct: 59  SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGA 111

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 81.8 bits (201), Expect = 3e-20
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           GT LD+ R +  + +   L P SV G+ +GEHG+S    WS V V G  +  +      +
Sbjct: 1   GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTL-----AD 55

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTL 214
               +   +  +     + ++  KGYTS+ +  S   +   ++ + +    +S  
Sbjct: 56  AGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNR 110

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 81.1 bits (199), Expect = 6e-20
 Identities = 30/113 (26%), Positives = 46/113 (40%)

Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
              LDS RFR  +A  L +SP  V   +IG HGD  VP+   + V G  +++        
Sbjct: 1   ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVT 60

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIS 212
               E    HT V          +G   +A   S  ++  + LN+  ++   S
Sbjct: 61  EKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCS 113

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 80.2 bits (197), Expect = 6e-20
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
           N  + + S +VI+T+GV ++EG SR+ L + N  I       I +      + +++NPVD
Sbjct: 68  NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFVITNPVD 126

Query: 80  ILTYVSWKLSGFPKNRVIG 98
           ++TY +   S F +N+V G
Sbjct: 127 VMTYKALVDSKFERNQVFG 145

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 80.3 bits (197), Expect = 1e-19
 Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           T+LD+ RFR  +A+ + +   SV+ +I+GEHGD+  PVWS  N+ GV + E   A     
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI- 59

Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
             ++  K+  DV ++AYEII+LKG T + I  ++A ++  +LN+ N +  +S  + 
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMD 115

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           T LD +R    +A+  GL P  V   +IG H   ++          V+            
Sbjct: 2   TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDF----------- 50

Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI 215
             ++   L   +  +  E+++ K     A      +    + +  + ++    ++
Sbjct: 51  PQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVV 105

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 79.4 bits (195), Expect = 2e-19
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
           LD+ RFR  +A +LG+S + +   ++G HGD+ VPV     VAG+ + ++ PA       
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPA------- 56

Query: 163 EEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
           E   KL     N   EI+    +G   +A   S+  +  +++ +  ++   + 
Sbjct: 57  ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAV 109

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 78.6 bits (193), Expect = 5e-19
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
           LD+ R+R  +A + G+S + V   ++G HGD  VP+     ++G+ + E           
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFI-------AP 56

Query: 163 EEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
           +   ++         EI+ L   G   +A   + A +   +L +  ++  ++ 
Sbjct: 57  DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAA 109

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 78.1 bits (192), Expect = 7e-19
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 4   TNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
            +          +    Y + E     ++     +  G  R +L++ N  IF      + 
Sbjct: 78  EDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALN 137

Query: 64  KYSPQ-CTLLIVSNPVDILTYVSWK-LSGFPKNRVIG 98
             + +   +L+V NP +    +  K     P      
Sbjct: 138 AVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHA 174

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 78.0 bits (191), Expect = 7e-19
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
           LD+ R +  ++QKL + P  V   I+G HG+  V +   + V G+ L+E           
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFIN--NKLISD 60

Query: 163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            E   +    VN+A EI+ L      A   +I  +  + L +  K+   STL++
Sbjct: 61  AELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLE 114

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 75.9 bits (186), Expect = 3e-18
 Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPV 78
                + +   ++     ++ G  R  L++ N  IF      + + + +   +L+V NP 
Sbjct: 74  PKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA 133

Query: 79  DILTYVSWKL-SGFPKNRVI 97
           +    +++K   G       
Sbjct: 134 NTNALIAYKNAPGLNPRNFT 153

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 76.7 bits (188), Expect = 3e-18
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           T LD  R +  +A KLG++ + V   II G H  +  P  +   V              +
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYE-AVK 59

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            D+   G+  T V      +I+ +  +S  +   +I      +   T +   +S  I 
Sbjct: 60  DDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGII 117

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 75.9 bits (186), Expect = 4e-18
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 10  FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ- 68
                + T       +   + I+   + +R+G  R  L++ NV IFK     + KY+ + 
Sbjct: 63  LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122

Query: 69  CTLLIVSNPVDILTYVSWKLS-GFPKNRVIG 98
             +++V NP +     + K +   PK     
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSC 153

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 76.2 bits (187), Expect = 6e-18
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           T LD  R +  LA K G+  + V    I G H  + VP +    + G  ++EV     T+
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIK--RTK 58

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNNTNKIHAISTLIQ 216
              EEF      V      +I+  G +S A   +SIA    +L+  T +    ST + 
Sbjct: 59  WLEEEF---TITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVY 113

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 75.3 bits (184), Expect = 8e-18
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           G  LDS RFR +L+++     ++V G I+GEHGD+ VPV+S V+V G +           
Sbjct: 2   GGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEF-------- 53

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
              +E  +L  D+  SA ++I  KG T W     +A +   +L++T ++ 
Sbjct: 54  -SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVL 102

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 73.1 bits (179), Expect = 3e-17
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 20  NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
                EG+ +V+++AGVR++ G  R  L   N  I K ++  + K  P+  + I++NPV+
Sbjct: 63  ATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVN 122

Query: 80  ILTYVSW----KLSGFPKNRVIG 98
               ++     K   + KN++ G
Sbjct: 123 TTVAIAAEVLKKAGVYDKNKLFG 145

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 21  YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
               +G  +V++ AGV ++ G +R  L   N  I   +     ++ P   + I+SNPV+ 
Sbjct: 63  PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS 122

Query: 81  LTYVSW----KLSGFPKNRVIG 98
              ++     K   +  N++ G
Sbjct: 123 TIPITAEVFKKHGVYNPNKIFG 144

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 71.8 bits (175), Expect = 2e-16
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           GT+LDS+RF+V +A+  G+  + V   IIGEHGDS VP+ S  ++ G+ +++        
Sbjct: 2   GTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
            D         DV     +IIRLKG + +    +I ++   ++NN  ++  +S  + 
Sbjct: 62  IDEI-----IEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVD 113

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.4 bits (174), Expect = 3e-16
 Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           T LD+ RFR LL +   ++P++V+ +IIGEHGD+ +PVWS   +  + +R++  + G E 
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE- 59

Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
             ++  ++  +V ++AY+II  KG T + I + +A +T  +L+N N I 
Sbjct: 60  AQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAIL 108

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.5 bits (172), Expect = 4e-16
 Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 21/103 (20%)

Query: 15  VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGI---------------- 58
           +++         ++ VI        +G      +     +                    
Sbjct: 60  LISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 59  ---IPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
                + V+ +   T++  +NP   +T            + IG
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSGHITEFVRNY--LEYEKFIG 160

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 70.5 bits (172), Expect = 6e-16
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
           T LD +R    +A+  G  P  V   +IG H   ++               ++   G   
Sbjct: 2   TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPL------------LSQVPGVSF 49

Query: 161 DTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
             +E   L   + N+  E++  K   G  + ++G + A    +L+        +  
Sbjct: 50  TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVE 105

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 67.8 bits (165), Expect = 6e-15
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 22/94 (23%)

Query: 25  EGSRIVIVTAGVRQRE--------------------GESRLSLVERNVNIFKGIIPNIVK 64
           +G+  V     V   E                    G   L    R + +   II ++ +
Sbjct: 76  DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEE 135

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
             P   L+  +NP  ++T    +     + +V+G
Sbjct: 136 LCPDAWLINFTNPAGMVTEAVLRY--TKQEKVVG 167

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 67.1 bits (163), Expect = 1e-14
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 3   TTNDHSSFKGVNVLTR----LNYALSEGSRIVIVTAGVRQREGESRLSLVE--------R 50
           T N        + +        +   E  R +    G  +       ++V          
Sbjct: 67  TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYN 126

Query: 51  NVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
            +  F  I   I K SP+   L  +NP+   T +  +       + +G
Sbjct: 127 QLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVPI---KAVG 171

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
           T LD  R +  LA+K G   + +    + G H  +  P      V G    E+       
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM---- 57

Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIS 212
            +  E   + T     A  I      ++ +   +           T +   +S
Sbjct: 58  -EWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVS 109

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 103 LDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD 161
           LD  R    +A K G    S+    + G H  +    +    + G +++++        D
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
           T             A    R     + A   +I  +   +L    K   +     
Sbjct: 63  TFLPTVGKRGA---AIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD 114

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 22/93 (23%)

Query: 25  EGSRIVIVTAGVRQREGESRLSLVERN--------------------VNIFKGIIPNIVK 64
                V+    V +    +    +                       +     I+  + K
Sbjct: 76  TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEK 135

Query: 65  YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVI 97
           YSP   +L  SNP  I+   + +L   P ++++
Sbjct: 136 YSPDAWMLNYSNPAAIVAEATRRL--RPNSKIL 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.96
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.96
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.96
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.96
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.95
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.95
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.95
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.95
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.95
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.95
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.95
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.95
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.94
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.94
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.94
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.94
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.94
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.94
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.94
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.94
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.94
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.94
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.94
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.93
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.93
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.93
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.93
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.93
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.93
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.93
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.93
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.92
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.92
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.92
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.91
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.91
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.91
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.91
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.86
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.84
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.82
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.82
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.81
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.77
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.69
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.39
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	90.78
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	89.86
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	86.86
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.33
d7reqb2	163	Methylmalonyl-CoA mutase beta subunit, C-terminal	84.95

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.96  E-value=4.4e-30  Score=200.56  Aligned_cols=97  Identities=40%  Similarity=0.682  Sum_probs=91.0

Q ss_pred             ccCC-CCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          4 TNDH-SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         4 ~~d~-~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      ++|. +|.....+..+++|++++|||+||+|+|.|++|||+|+|++..|++|+++++++|++++|+++++++|||+|+||
T Consensus        46 l~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt  125 (143)
T d1llda1          46 MQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIAT  125 (143)
T ss_dssp             HHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHH
T ss_pred             HHhccccCCCceeecCCCHHHhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHH
Confidence            4443 466677787889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeec
Q psy17689         83 YVSWKLSGFPKNRVIGSG  100 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~G  100 (216)
                      |++|+.||||++||||+|
T Consensus       126 ~~~~~~sg~p~~rViG~G  143 (143)
T d1llda1         126 HVAQKLTGLPENQIFGSG  143 (143)
T ss_dssp             HHHHHHHTCCTTSEEECT
T ss_pred             HHHHHHHCCChhhccCCC
Confidence            999999999999999997

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=6.1e-30  Score=199.53  Aligned_cols=89  Identities=26%  Similarity=0.421  Sum_probs=83.8

Q ss_pred             CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHh
Q psy17689          9 SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL   88 (216)
Q Consensus         9 ~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~   88 (216)
                      |.... .+.+++|++++|||+||+|||.||+|||+|+|++..|++|+++++++|++++|+++++++|||+|+||+++|+.
T Consensus        54 ~~~~~-~i~~~~~~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~~k~  132 (142)
T d1o6za1          54 YDSNT-RVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEA  132 (142)
T ss_dssp             TTCCC-EEEECCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHH
T ss_pred             ccCCc-eEeeCCHHHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHHHHH
Confidence            44444 45678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEe
Q psy17689         89 SGFPKNRVIG   98 (216)
Q Consensus        89 sg~~~~~viG   98 (216)
                      ||||++||||
T Consensus       133 sg~~~~rViG  142 (142)
T d1o6za1         133 GDRSREQVIG  142 (142)
T ss_dssp             SSSCGGGEEE
T ss_pred             HCcCcccccC
Confidence            9999999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.96  E-value=2.1e-29  Score=196.45  Aligned_cols=99  Identities=41%  Similarity=0.656  Sum_probs=81.8

Q ss_pred             ccccCCCCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          2 LTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      ++++|+.......++.+++|++++|||+||+|||.|++||++|++++.+|++|+++++++|++++|+++++++|||+|+|
T Consensus        44 ~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~  123 (142)
T d1y6ja1          44 MDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDII  123 (142)
T ss_dssp             HHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHH
T ss_pred             eeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHH
Confidence            34556543333445567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEeec
Q psy17689         82 TYVSWKLSGFPKNRVIGSG  100 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG~G  100 (216)
                      |+++|+.||||++||||+|
T Consensus       124 t~~~~k~sg~p~~rViG~G  142 (142)
T d1y6ja1         124 TYMIQKWSGLPVGKVIGSG  142 (142)
T ss_dssp             HHHHHHHHTCCTTTEEECT
T ss_pred             HHHHHHHHCCCccceecCC
Confidence            9999999999999999997

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.96  E-value=5.6e-29  Score=198.55  Aligned_cols=116  Identities=40%  Similarity=0.697  Sum_probs=108.0

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCC-CCCHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT-EGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~-~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      |.|||+||+++||+++|+++++|+++||||||++|||+||+++|+|+|+.++++.... .++.+.++++.++++++|++|
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~i   80 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKI   80 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhHH
Confidence            7899999999999999999999999999999999999999999999999998764322 356777889999999999999


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        180 IRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       180 i~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++||+++|++|.+++++++++++|++.++|+|++++
T Consensus        81 ~~~kg~t~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~  117 (170)
T d1llda2          81 INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLK  117 (170)
T ss_dssp             HTSCCSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECS
T ss_pred             HhhhccchhhhHHHHHHHHHHHHcCCCceeeeecccc
Confidence            9999999999999999999999999999999999863

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.4e-29  Score=199.50  Aligned_cols=99  Identities=29%  Similarity=0.408  Sum_probs=90.1

Q ss_pred             ccchhHHHHHHHHHHHhCCCCCce-eEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy17689        100 GTNLDSMRFRVLLAQKLGLSPESV-YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE  178 (216)
Q Consensus       100 Gt~lds~R~~~~la~~l~v~~~~v-~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~  178 (216)
                      ||.|||+|||++|++..   +.++ ++||||||||+|||+||.++++|++               +++++.++++++|++
T Consensus         1 Gt~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGds~vp~~S~~~i~g~~---------------~~~~i~~~v~~~g~e   62 (152)
T d1ojua2           1 GNQLDSQRLKERLYNAG---ARNIRRAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAVENDVRFVAAE   62 (152)
T ss_dssp             SHHHHHHHHHHHHHHTT---CBSCCCCCEEBCSSTTCEECGGGCCCBSCC---------------CHHHHHHHHHTTHHH
T ss_pred             CCccHHHHHHHHHHccC---CCCcceeEEEecCCCccccccccccccCcc---------------chhHhHHHHHHHHHH
Confidence            79999999999998765   4445 8999999999999999999998743               246799999999999


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        179 IIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       179 ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      |+++||+|+||||.++++|+++|++|+++++|||++++
T Consensus        63 Ii~~kG~t~~gia~a~~~iv~aIl~d~~~v~pvs~~l~  100 (152)
T d1ojua2          63 VIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQ  100 (152)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred             hhhhccceeccHHHHHHHHHHHHHhcCCCceeeeEEec
Confidence            99999999999999999999999999999999999874

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.95  E-value=8e-29  Score=197.61  Aligned_cols=118  Identities=60%  Similarity=1.048  Sum_probs=110.0

Q ss_pred             eccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy17689         99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE  178 (216)
Q Consensus        99 ~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~  178 (216)
                      +||.||++||+++||+++|++|++|+++||||||++|||+||+++|+|.|+.+++++.....+.+.++++.+++++++++
T Consensus         1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   80 (172)
T d1i0za2           1 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYE   80 (172)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHhCcCHHHceEEEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEE
Confidence            59999999999999999999999999999999999999999999999999999987654445556678899999999999


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        179 IIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       179 ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      +++.||+++|++|.++++++++++++++.++|+|++++
T Consensus        81 ~~~~~~~s~~a~a~~~~~~~~~~~~~~~~v~~~~~~~~  118 (172)
T d1i0za2          81 VIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVK  118 (172)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred             eeecccccchHHHHHHHHHHHHHhcCCCcccccceecc
Confidence            99999999999999999999999999999999999863

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.95  E-value=5.5e-29  Score=198.54  Aligned_cols=116  Identities=42%  Similarity=0.648  Sum_probs=102.2

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII  180 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii  180 (216)
                      |.||++||+++||+++|++|++|+++||||||++|+|+||+++++|.|+.+++++....++.++++++.+++++++++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATII   80 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Confidence            78999999999999999999999999999999999999999999999999998764444566677899999999999999


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       181 ~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++||++.|++|.++++++++++.|++.++|+|++++
T Consensus        81 ~~~~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~  116 (169)
T d1y6ja2          81 KNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN  116 (169)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHTCCCEECCEEEEC
T ss_pred             hhhhhhhhHHHHHHHHHHHHhccCCCCceeeeeeec
Confidence            999999999999999999999999999999999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=7e-29  Score=194.58  Aligned_cols=98  Identities=38%  Similarity=0.657  Sum_probs=89.9

Q ss_pred             cccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          3 TTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         3 ~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++|+. |......+.++||++++|||+||+|+|.|++||++|+|++.+|++|+++++++|++++|+++++++|||+|+|
T Consensus        50 Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~  129 (148)
T d1ldna1          50 DFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDIL  129 (148)
T ss_dssp             HHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHH
T ss_pred             cHhhCccccCCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHH
Confidence            344543 4455556678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEeec
Q psy17689         82 TYVSWKLSGFPKNRVIGSG  100 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG~G  100 (216)
                      ||++++.+||||+||||+|
T Consensus       130 t~~~~k~sg~p~~rViG~G  148 (148)
T d1ldna1         130 TYATWKFSGLPHERVIGSG  148 (148)
T ss_dssp             HHHHHHHHTCCGGGEEECT
T ss_pred             HHHHHHHHCcChhheecCC
Confidence            9999999999999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=1e-28  Score=192.55  Aligned_cols=90  Identities=40%  Similarity=0.739  Sum_probs=86.3

Q ss_pred             CCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhc
Q psy17689         10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLS   89 (216)
Q Consensus        10 ~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~s   89 (216)
                      ....++..++||++++|||+||+|+|.|++||++|++++.+|++|++++++++++++|+++++++|||+|+|||++|+.+
T Consensus        53 ~~~~~i~~~~d~~~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~~k~s  132 (142)
T d1ojua1          53 DKYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKES  132 (142)
T ss_dssp             TCCCEEEEESCGGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHS
T ss_pred             CCCCccccCCCHHHhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHHHHHH
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEee
Q psy17689         90 GFPKNRVIGS   99 (216)
Q Consensus        90 g~~~~~viG~   99 (216)
                      |||++||||+
T Consensus       133 g~p~~rViG~  142 (142)
T d1ojua1         133 GKPRNEVFGM  142 (142)
T ss_dssp             CCCTTSEEEC
T ss_pred             CCChhcEecC
Confidence            9999999995

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=9.3e-29  Score=192.19  Aligned_cols=90  Identities=42%  Similarity=0.664  Sum_probs=84.2

Q ss_pred             CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHh
Q psy17689          9 SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL   88 (216)
Q Consensus         9 ~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~   88 (216)
                      |.... .+.+++|++++|||+||+|+|.|++||++|+|++.+|++|+++++++|+++||+++++++|||+|+||+++++.
T Consensus        51 ~~~~~-~~~~~~~~~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~~k~  129 (140)
T d1a5za1          51 FTRRA-NIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKE  129 (140)
T ss_dssp             GSCCC-EEEECCGGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred             ccccc-cccCCcHHHhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHH
Confidence            44333 45578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEee
Q psy17689         89 SGFPKNRVIGS   99 (216)
Q Consensus        89 sg~~~~~viG~   99 (216)
                      +||||+||||+
T Consensus       130 sg~p~~rViGt  140 (140)
T d1a5za1         130 SGMDPRKVFGS  140 (140)
T ss_dssp             HTCCTTTEEEC
T ss_pred             HCcCccceeCc
Confidence            99999999986

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=4.9e-28  Score=193.10  Aligned_cols=116  Identities=37%  Similarity=0.664  Sum_probs=108.6

Q ss_pred             ccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       100 Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      ||.||++||+++||+++|++|.+|+++||||||++|||+||+++++|.|+.++++. ...++.+.++++.++++++|+++
T Consensus         1 GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i   79 (172)
T d1a5za2           1 GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQV-CQKCDSKILENFAEKTKRAAYEI   79 (172)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHTT-SSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHCcCHHHeEEEEEecCCCCcccchhhcccCCcchhhhhhc-cccccHHHhhhhHHHHhccceeE
Confidence            89999999999999999999999999999999999999999999999999998753 23467778899999999999999


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        180 IRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       180 i~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++.||+++|++|.++++++.+++.+++.++|+|++++
T Consensus        80 ~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~  116 (172)
T d1a5za2          80 IERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLE  116 (172)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEES
T ss_pred             eeccccchhhHHHHHHHHHHHHHhhcccceeeecccc
Confidence            9999999999999999999999999999999998763

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.95  E-value=3.3e-28  Score=192.71  Aligned_cols=111  Identities=25%  Similarity=0.482  Sum_probs=102.3

Q ss_pred             ccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       100 Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      ||.|||+||++++|+++|++|++|+++||||||++|||+||+++++|+|+.+++..     .+++++++.+++++++++|
T Consensus         1 GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~-----~~~~~~~i~~~v~~~~~~i   75 (163)
T d1hyha2           1 GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADA-----GDIDLAAIEEEARKGGFTV   75 (163)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTTTCEECTTTCEETTEEGGGC----------CCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCcCccceeccccCCchHHHHhcc-----ccchHHHHHHHHhhhHHHH
Confidence            89999999999999999999999999999999999999999999999999998753     2345689999999999999


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        180 IRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       180 i~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++.||+++|++|.++.+++.+++.+++.++|+|.+.
T Consensus        76 ~~~kg~~~~~~a~~~~~~~~~~~~~~~~~~~~s~~~  111 (163)
T d1hyha2          76 LNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRR  111 (163)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred             HHHHHhHHHhHHHHhhHHHHHhcCCccceeeeceec
Confidence            999999999999999999999999999999999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.95  E-value=1e-28  Score=193.34  Aligned_cols=98  Identities=43%  Similarity=0.749  Sum_probs=80.5

Q ss_pred             cccCCCCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          3 TTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         3 ~~~d~~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      +++|++....+.++.++||++++|||+||+|+|.|++||++|++++..|++++++++++|++++|+++++++|||+|+|+
T Consensus        49 Dl~~a~~~~~~~~~~~~d~~~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t  128 (146)
T d1ez4a1          49 DLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILT  128 (146)
T ss_dssp             HHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHH
T ss_pred             HHhccccccCCceEeeccHHHhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHH
Confidence            45555544455566788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEeec
Q psy17689         83 YVSWKLSGFPKNRVIGSG  100 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG~G  100 (216)
                      +++++.+|||++||||+|
T Consensus       129 ~~~~k~sg~p~~rViG~G  146 (146)
T d1ez4a1         129 YATWKFSGFPKERVIGSG  146 (146)
T ss_dssp             HHHHHHHCCCGGGEEECT
T ss_pred             HHHHHHHCcCccceecCC
Confidence            999999999999999997

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.95  E-value=4e-28  Score=194.21  Aligned_cols=114  Identities=26%  Similarity=0.360  Sum_probs=102.7

Q ss_pred             ccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       100 Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      ||+||++||+++||+++|++|++|+++||||||+||||+||+++++|+|+.++++...  ....++.+...+.+.+|.++
T Consensus         1 ~c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~g~~~   78 (174)
T d1pzga2           1 ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGV--VTEKQLEEIAEHTKVSGGEI   78 (174)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhCcCHHHcEEEEEccCCCccccceeeeeECCEechhhccccc--hhhhhhhhhhheeeccceeE
Confidence            7999999999999999999999999999999999999999999999999999876432  44566677777788888777


Q ss_pred             HH--hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        180 IR--LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       180 i~--~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      +.  .||++.|++|.+++++++++++|++.++|+|+++
T Consensus        79 ~~~~~~gst~~~~a~a~~~~~~~i~~~~~~~~~~s~~~  116 (174)
T d1pzga2          79 VRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYC  116 (174)
T ss_dssp             HHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             eeeecccchhhhhHHHHHHHHHhhcccCCceEEeeecc
Confidence            65  6789999999999999999999999999999976

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.94  E-value=6.4e-28  Score=191.41  Aligned_cols=95  Identities=61%  Similarity=1.032  Sum_probs=88.8

Q ss_pred             ccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689          4 TNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT   82 (216)
Q Consensus         4 ~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t   82 (216)
                      ++|++ |.+.+.++.++||++++|||+||+|||.|++|||+|++++..|++|+++++++|++++|+++++++|||+|+||
T Consensus        65 l~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t  144 (160)
T d1i0za1          65 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILT  144 (160)
T ss_dssp             HHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHH
T ss_pred             HhccccccCCCeEEeccchhhcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHH
Confidence            44443 55667778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEe
Q psy17689         83 YVSWKLSGFPKNRVIG   98 (216)
Q Consensus        83 ~~~~~~sg~~~~~viG   98 (216)
                      +++++.+|||++||||
T Consensus       145 ~~~~k~sglp~~rViG  160 (160)
T d1i0za1         145 YVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             HHHHHHHCCCGGGEEE
T ss_pred             HHHHHHHCcCcccccC
Confidence            9999999999999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.94  E-value=3.7e-28  Score=190.11  Aligned_cols=96  Identities=22%  Similarity=0.381  Sum_probs=81.3

Q ss_pred             ccCC-CCCCCceEEEcCCccccCCccEEEEcCCCCC----CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689          4 TNDH-SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQ----REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV   78 (216)
Q Consensus         4 ~~d~-~~~~~~~v~~~~~~~~~~daDivvitag~~~----k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv   78 (216)
                      ++|+ ++...+..+.++||++++|||+||+|||.||    +||++|+|++..|++|++++++.+++++|+++++++|||+
T Consensus        46 l~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv  125 (146)
T d1hyha1          46 FQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV  125 (146)
T ss_dssp             HHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred             hhccccccCCccceeccCHHHhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcH
Confidence            3444 3444555566889999999999999999987    7899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCCEEee
Q psy17689         79 DILTYVSWKLSGFPKNRVIGS   99 (216)
Q Consensus        79 d~~t~~~~~~sg~~~~~viG~   99 (216)
                      |+||+++|+.+|||++||||+
T Consensus       126 D~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1         126 DVITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             HHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHHHHHHHHHhCCCccceeCc
Confidence            999999999999999999986

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.94  E-value=1.4e-27  Score=190.24  Aligned_cols=113  Identities=33%  Similarity=0.583  Sum_probs=106.7

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII  180 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii  180 (216)
                      |.||++||+++||+++|++|++|+++||||||++|||+||+++++|.|+.++++..  .+..++++++.++++.++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~   78 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSDDDLAKLEDGVRNKAYDII   78 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSSSCEECGGGCEETTEEHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCCcccccccccccCCccceeecccc--cccchhhhhheeehhhhhHHHH
Confidence            78999999999999999999999999999999999999999999999999887643  3567788999999999999999


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       181 ~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ++||+++|++|.++++++++++++++.++|+++++
T Consensus        79 ~~k~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~  113 (171)
T d1ez4a2          79 NLKGATFYGIGTALMRISKAILRDENAVLPVGAYM  113 (171)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HhhhhHhHHHHHHHHHHHHHHhccCCceEEEEEee
Confidence            99999999999999999999999999999999975

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.94  E-value=1.7e-27  Score=189.10  Aligned_cols=108  Identities=20%  Similarity=0.405  Sum_probs=101.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17689        102 NLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR  181 (216)
Q Consensus       102 ~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~  181 (216)
                      .||++||++++|+++|++|++|+++||||||++|||+||+++++|.|+.+++       +++.++++.++++++|++|++
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~i~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~   75 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFI-------APDRLAQIVERTRKGGGEIVN   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGGGEECCGGGEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCceeeeeeeeecCCCchhhcc-------chhhHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999999999999875       357788999999999999976


Q ss_pred             --hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        182 --LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       182 --~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                        +||++.||+|.++++|+++|++|++.++|+|++++
T Consensus        76 ~~~kgs~~~a~a~a~~~i~~~i~~~~~~~~~~~~~~~  112 (164)
T d1uxja2          76 LLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLT  112 (164)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHhcCcccchHHHHHHHHHHHHhCCCCceeeeeeeec
Confidence              57899999999999999999999999999999863

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.94  E-value=1.2e-27  Score=186.09  Aligned_cols=91  Identities=41%  Similarity=0.627  Sum_probs=86.4

Q ss_pred             CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHh
Q psy17689          9 SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL   88 (216)
Q Consensus         9 ~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~   88 (216)
                      +....++..+++|++++|||+||+|+|.|++||++|++++.+|++|++++++.++++||+++++++|||+|+||+++++.
T Consensus        52 ~~~~~~i~~~~~~~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~~~~  131 (142)
T d1guza1          52 GLFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVR  131 (142)
T ss_dssp             HTCCCEEEEESCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHH
T ss_pred             hcccceEEecCCHHHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHHHHH
Confidence            34566677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEee
Q psy17689         89 SGFPKNRVIGS   99 (216)
Q Consensus        89 sg~~~~~viG~   99 (216)
                      +|||++||||+
T Consensus       132 sg~p~~rviG~  142 (142)
T d1guza1         132 SGLPKERVIGM  142 (142)
T ss_dssp             HCSCGGGEEEE
T ss_pred             hCCChHhEeeC
Confidence            99999999996

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.94  E-value=1.2e-27  Score=189.90  Aligned_cols=107  Identities=26%  Similarity=0.440  Sum_probs=101.1

Q ss_pred             chhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17689        102 NLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR  181 (216)
Q Consensus       102 ~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~  181 (216)
                      +|||+||+++||+++|++|++|+++||||||++|||+||+++++|+|+.+++       +++.++++.++++++|++|++
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~s~vp~~s~~~i~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~   75 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVE   75 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccCHhhcccCCccccccC-------CHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999999999999875       356778999999999999987


Q ss_pred             h--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        182 L--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       182 ~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      .  ||++.|++|.++++++++++.+++.++|+|+++
T Consensus        76 ~~~kgsa~~a~~~~~~~~~~~i~~~~~~~~~~~~~~  111 (163)
T d1guza2          76 HLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGL  111 (163)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HhcCCCcchhHHHHHHHHHHheeccCCCEEEEeeee
Confidence            4  789999999999999999999999999999875

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.94  E-value=2.1e-27  Score=193.07  Aligned_cols=108  Identities=26%  Similarity=0.257  Sum_probs=96.2

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      |.|||+|||++||+++|++|++|+++ ||||||+||||+||+++|+|+|+.++++.     +...++++.++++++|++|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~-----~~~~~~~~~~~v~~~~~~i   75 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKR-----TKWLEEEFTITVQKRGGAL   75 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCC-----HHHHHHHHHHHHHTHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccc-----hhhhHHHHHHHHhhhHHHH
Confidence            78999999999999999999999985 88999999999999999999999998752     2334588999999999999


Q ss_pred             HHhhCCCCh-hHHHHHHHHHHHHHcCCCceEEEEe
Q psy17689        180 IRLKGYTSW-AIGLSIASLTYTLLNNTNKIHAIST  213 (216)
Q Consensus       180 i~~Kg~t~~-~~a~a~~~ii~ail~~~~~ilpvS~  213 (216)
                      ++.||.++| ++|.|+++++++|+++++...|+|+
T Consensus        76 i~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~  110 (188)
T d7mdha2          76 IQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFST  110 (188)
T ss_dssp             HHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEE
T ss_pred             HHhhcccchhhHHHHHHHHHHHHHcCCCCCceEEE
Confidence            999998887 5999999999999998876655553

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5e-28  Score=191.89  Aligned_cols=96  Identities=46%  Similarity=0.865  Sum_probs=89.4

Q ss_pred             cccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          3 TTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         3 ~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++|+. +...+.++.++||++++|||+||+|||.|++|||+|+|++..|++|+++++++|++++|+++++++|||+|+|
T Consensus        63 Dl~~~~~~~~~~~~~~~~d~~~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~  142 (159)
T d2ldxa1          63 DLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDIL  142 (159)
T ss_dssp             HHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHH
T ss_pred             HHhCcchhcCCCeEEeccchhhhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHH
Confidence            455554 4556777788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCEEe
Q psy17689         82 TYVSWKLSGFPKNRVIG   98 (216)
Q Consensus        82 t~~~~~~sg~~~~~viG   98 (216)
                      ||++++.+|||++||||
T Consensus       143 t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1         143 TYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             HHHHHHHHCSCTTTEEE
T ss_pred             HHHHHHHHCcCcccccC
Confidence            99999999999999998

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.94  E-value=2e-27  Score=184.99  Aligned_cols=88  Identities=38%  Similarity=0.642  Sum_probs=75.8

Q ss_pred             CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcC
Q psy17689         11 KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSG   90 (216)
Q Consensus        11 ~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg   90 (216)
                      ...++..++||++++|||+||+|||.|++||++|+|++..|++|+++++++|.+++|+++++++|||+|+|||++|+.||
T Consensus        54 ~~~~i~~~~d~~~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~~~~sg  133 (142)
T d1uxja1          54 FDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG  133 (142)
T ss_dssp             CCCCEEEESCGGGGTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHHHHHHC
T ss_pred             CCCEEEecCcHHHhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHHHHHHC
Confidence            34567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEe
Q psy17689         91 FPKNRVIG   98 (216)
Q Consensus        91 ~~~~~viG   98 (216)
                      ||++||||
T Consensus       134 lp~~rViG  141 (142)
T d1uxja1         134 FPKERVIG  141 (142)
T ss_dssp             CCGGGEEE
T ss_pred             cCcccccC
Confidence            99999998

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=3.8e-27  Score=185.11  Aligned_cols=89  Identities=36%  Similarity=0.535  Sum_probs=84.8

Q ss_pred             CceEEEcCCccccCCccEEEEcCCCCCCCCcC-----HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHH
Q psy17689         12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW   86 (216)
Q Consensus        12 ~~~v~~~~~~~~~~daDivvitag~~~k~g~~-----r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~   86 (216)
                      ...+..+++|++++|||+||+|+|.|++||++     |++++..|++|+++++++++++||+++++++|||+|+|||++|
T Consensus        57 ~~~v~~~~~~~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~~  136 (150)
T d1t2da1          57 NCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLH  136 (150)
T ss_dssp             CCCEEEECCGGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHH
T ss_pred             CcEEEecccccccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHH
Confidence            45566778999999999999999999999986     9999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCEEeec
Q psy17689         87 KLSGFPKNRVIGSG  100 (216)
Q Consensus        87 ~~sg~~~~~viG~G  100 (216)
                      +.+|||++||||+|
T Consensus       137 ~~sg~p~~rViG~G  150 (150)
T d1t2da1         137 QHSGVPKNKIIGLG  150 (150)
T ss_dssp             HHHCCCGGGEEECC
T ss_pred             HHHCCCchheeccC
Confidence            99999999999997

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.4e-26  Score=180.86  Aligned_cols=81  Identities=32%  Similarity=0.541  Sum_probs=77.5

Q ss_pred             EcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCE
Q psy17689         17 TRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRV   96 (216)
Q Consensus        17 ~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~v   96 (216)
                      .++||++++|||+||||||.|++|||+|+|++..|++|++++++++++++|++++ ++|||+|+|+|++|+.+|||++||
T Consensus        65 ~~~d~~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~~k~sg~p~~rV  143 (145)
T d1hyea1          65 SDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKALVDSKFERNQV  143 (145)
T ss_dssp             ETTCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHHHHHHCCCTTSE
T ss_pred             CcchHHHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHHHHHHCcCcccc
Confidence            4568999999999999999999999999999999999999999999999999875 689999999999999999999999


Q ss_pred             Ee
Q psy17689         97 IG   98 (216)
Q Consensus        97 iG   98 (216)
                      ||
T Consensus       144 iG  145 (145)
T d1hyea1         144 FG  145 (145)
T ss_dssp             EE
T ss_pred             cC
Confidence            98

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.93  E-value=8.3e-27  Score=185.15  Aligned_cols=115  Identities=52%  Similarity=0.920  Sum_probs=104.4

Q ss_pred             eccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy17689         99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE  178 (216)
Q Consensus        99 ~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~  178 (216)
                      +||.||++||+++||++||++|++|+++||||||++|+|+||+++++|.|+.++....   .+.+.+.++.++++.++++
T Consensus         1 sGT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   77 (169)
T d1ldma2           1 SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTN---KDKQDWKKLHKDVVDSAYE   77 (169)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSCGGGCBCCBCBCSSTTCCBCGGGCEETTEESHHHHSST---TTTTTTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCccchhhhhhcccCCcchHHhhccc---chhhhcceeEEEecCceEE
Confidence            5999999999999999999999999999999999999999999999999999886532   2234455778889999999


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        179 IIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       179 ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++..||++.|++|.++++++++++.+++.++|+|++++
T Consensus        78 ~~~~~~s~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~  115 (169)
T d1ldma2          78 VIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVK  115 (169)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred             EeccccchhhHHHHHHhhhhheecCCCCceeeeeeecc
Confidence            99999999999999999999999999999999999863

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-26  Score=184.47  Aligned_cols=118  Identities=53%  Similarity=1.028  Sum_probs=107.6

Q ss_pred             eccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy17689         99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE  178 (216)
Q Consensus        99 ~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~  178 (216)
                      +||.||++||++++|+++|++|++|+++||||||++|+|+||+++|+|.|+.++.+........++.+.+.++++..+++
T Consensus         1 tGT~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   80 (172)
T d2ldxa2           1 SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYE   80 (172)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCTTSSCCCEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceee
Confidence            59999999999999999999999999999999999999999999999999999887543333444557899999999999


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        179 IIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       179 ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++..||++.|++|.++++++.+++.+++.++|++++++
T Consensus        81 ~~~~k~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  118 (172)
T d2ldxa2          81 VLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVK  118 (172)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred             hhhcccchhHHHHHHHhHHHHhhcCCCccceeeeeecc
Confidence            99999999999999999999999999999999998753

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=2.5e-27  Score=188.29  Aligned_cols=112  Identities=31%  Similarity=0.525  Sum_probs=98.0

Q ss_pred             eccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy17689         99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE  178 (216)
Q Consensus        99 ~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~  178 (216)
                      +||.|||+||++++|++||++|++|+++||||||++|||+||+++++|+|+.++.+..     ...++++.++++++++.
T Consensus         1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   75 (168)
T d1hyea2           1 LGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFK-----ELPIDEIIEDVKTKGEQ   75 (168)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTEEGGGCGGGG-----GCCHHHHHHHHHHHTTS
T ss_pred             CCchHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCccccchhheeECCEecccccccc-----hhhhhhHHHHHhhhHHH
Confidence            5999999999999999999999999999999999999999999999999999986532     23457889999999999


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        179 IIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       179 ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      +++.||+++|++|.+++.++++++++.+.++|+|+++
T Consensus        76 ~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  112 (168)
T d1hyea2          76 IIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYV  112 (168)
T ss_dssp             CCC------CCHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHHhccCccccchhhhhHHHHhhhccCCCeEEEEEEE
Confidence            9999999999999999999999999999999999875

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.93  E-value=2e-26  Score=182.91  Aligned_cols=113  Identities=27%  Similarity=0.392  Sum_probs=105.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy17689        102 NLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR  181 (216)
Q Consensus       102 ~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~  181 (216)
                      .||++||++++|+++|++|++|+++||||||++|+|+||+++++|.|+.++.+..  ...+++++++.++++++|+++++
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LISDAELEAIFDRTVNTALEIVN   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccceeecccCCcchhhhcccc--hhhhhhhhhhhhhhhhhhHHHhh
Confidence            4899999999999999999999999999999999999999999999999876532  35577888999999999999999


Q ss_pred             hhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        182 LKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       182 ~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      .||+++|++|.+++.++++++.+++.++|+|++++
T Consensus        80 ~~~~~~~a~a~a~~~~~~~i~~~~~~~~~~~v~~~  114 (165)
T d1t2da2          80 LHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLE  114 (165)
T ss_dssp             HTSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             hccceeechhHHHHHHHHHHhhccccceeeeeccc
Confidence            99999999999999999999999999999999864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.9e-27  Score=181.76  Aligned_cols=96  Identities=23%  Similarity=0.395  Sum_probs=84.6

Q ss_pred             cccCCCCCCCceE-EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          3 TTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         3 ~~~d~~~~~~~~v-~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++|+++...... ..+++|++++|||+||+|+|.|++|||+|+|++..|++|+++++++|.+++|+++++++|||+|+|
T Consensus        45 Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m  124 (145)
T d2cmda1          45 DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTT  124 (145)
T ss_dssp             HHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHH
T ss_pred             HHHCCccccCCcEEEcCCCccccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHH
Confidence            4556655543333 356789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH----hcCCCCCCEEe
Q psy17689         82 TYVSWK----LSGFPKNRVIG   98 (216)
Q Consensus        82 t~~~~~----~sg~~~~~viG   98 (216)
                      ++++++    .++||++||||
T Consensus       125 ~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1         125 VAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             HHHHHHHHHHTTCCCGGGEEE
T ss_pred             HHHHHHHHHHcCCCChhhccC
Confidence            998875    46799999998

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.93  E-value=2.4e-26  Score=184.77  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=89.3

Q ss_pred             ccccCCCCCCCceEEEc-CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh
Q psy17689          2 LTTNDHSSFKGVNVLTR-LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD   79 (216)
Q Consensus         2 ~~~~d~~~~~~~~v~~~-~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd   79 (216)
                      +|++|++++....++.+ ++|++++|||+||+++|.||+|||+|+|++..|++|+++++++|++|+| +++++++|||+|
T Consensus        75 mdl~d~a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          75 MELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             HHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence            47899999876666644 4578899999999999999999999999999999999999999999986 899999999999


Q ss_pred             HHHHHHHH-hcCCCCCCEEee
Q psy17689         80 ILTYVSWK-LSGFPKNRVIGS   99 (216)
Q Consensus        80 ~~t~~~~~-~sg~~~~~viG~   99 (216)
                      +||+++++ ++|+|++||+|+
T Consensus       155 ~~t~ia~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         155 TNALICLKNAPDIPAKNFHAL  175 (175)
T ss_dssp             HHHHHHHHTCTTSCGGGEEEC
T ss_pred             HHHHHHHHHCCCCCHHHEeCC
Confidence            99999999 589999999985

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.93  E-value=2.5e-27  Score=189.06  Aligned_cols=115  Identities=37%  Similarity=0.638  Sum_probs=104.7

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII  180 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii  180 (216)
                      |.||++||+++||+++|+++++|+++||||||++|+|+||+++++|+|+.+++.... .++.+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP-EIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSSSCEEEEEEEESTTCCSSSSSSCSC-SSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCcceeeeeccccCCccHHHHHhhhh-ccchhHHHHHHHhhcchHHHHH
Confidence            789999999999999999999999999999999999999999999999999875422 2334455778899999999999


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       181 ~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ++||+++|++|.++++++++++.+++.++|+|++++
T Consensus        80 ~~kg~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~  115 (172)
T d1llca2          80 KLKGATFYGIATALARISKAILNDENAVLPLSVYMD  115 (172)
T ss_dssp             SSSSCTTHHHHHHHHHHHHHHHHTCCCCEECCCCCS
T ss_pred             HhhhhhhhhhHHHHHHHHHHHhcCCCCccceeeeec
Confidence            999999999999999999999999999999998763

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.2e-25  Score=176.52  Aligned_cols=114  Identities=35%  Similarity=0.666  Sum_probs=104.5

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII  180 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii  180 (216)
                      |.||++||++++|+++|++|++|+++||||||++|+|+||+++++|.|+.++.+... ....+.++++.++++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEESTTTSGGGT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCccccchhhcccCCcchhhhhhhhh-hhhccchhhhhhhhhhhHHHHH
Confidence            789999999999999999999999999999999999999999999999999876432 2234456789999999999999


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       181 ~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      ..||++.|+++.++.+++++++.+.+.++|+++++
T Consensus        80 ~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  114 (168)
T d1ldna2          80 EKKGATYYGIAMGLARVTRAILHNENAILTVSAYL  114 (168)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HhhccccchHHHHHhhHHHhhhcccceeeeeeeee
Confidence            99999999999999999999999999999999875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.92  E-value=3.3e-26  Score=178.52  Aligned_cols=95  Identities=21%  Similarity=0.308  Sum_probs=81.3

Q ss_pred             ccCCC-CCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689          4 TNDHS-SFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL   81 (216)
Q Consensus         4 ~~d~~-~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~   81 (216)
                      +++.. |......+..++ |++++|||+||+|+|.|++|||+|++++..|++|++++++++++++|+++++++|||+|+|
T Consensus        44 l~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~  123 (144)
T d1mlda1          44 LSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNST  123 (144)
T ss_dssp             HTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHH
T ss_pred             HhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhh
Confidence            34443 443444554444 5669999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH----HhcCCCCCCEEe
Q psy17689         82 TYVSW----KLSGFPKNRVIG   98 (216)
Q Consensus        82 t~~~~----~~sg~~~~~viG   98 (216)
                      +++++    +.+|||++||||
T Consensus       124 t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1         124 IPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             HHHHHHHHHHTTCCCTTSEEE
T ss_pred             HHHHHHHHHHhcCCCcccccC
Confidence            88764    677899999998

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.92  E-value=6e-26  Score=182.59  Aligned_cols=112  Identities=20%  Similarity=0.181  Sum_probs=96.5

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      |.|||+|||++||+++|++|++|+++ ||||||++|||+||+++|+|+|+.+++++.. ..+....+++.++++++|++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAV-KDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHH-CCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhcc-ccchhhHHHHHHHHHhccHhh
Confidence            78999999999999999999999996 5599999999999999999999988765421 133455678999999999999


Q ss_pred             HHhhCC-CChhHHHHHHHHHHHHHcCCCceEEEEe
Q psy17689        180 IRLKGY-TSWAIGLSIASLTYTLLNNTNKIHAIST  213 (216)
Q Consensus       180 i~~Kg~-t~~~~a~a~~~ii~ail~~~~~ilpvS~  213 (216)
                      ++.||. +.|++|.|+++++++|+++.+...++|+
T Consensus        80 ~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~  114 (179)
T d5mdha2          80 IKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSM  114 (179)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEE
T ss_pred             hhccCcchHHHHHHHHHHHHHHHHhhcccCCceeE
Confidence            998765 5589999999999999998777666664

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.3e-25  Score=176.64  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=86.0

Q ss_pred             cccCCCCCCCceEE-EcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchhH
Q psy17689          3 TTNDHSSFKGVNVL-TRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVDI   80 (216)
Q Consensus         3 ~~~d~~~~~~~~v~-~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd~   80 (216)
                      +++|++++....+. .+++|++++|||+||+|+|.|++|||+|+|++..|+++++++++++++|+| +++++++|||+|+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          56 ELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhccccccccccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            56788877665555 455688899999999999999999999999999999999999999999985 8999999999999


Q ss_pred             HHHHHHHh-cCCCCCCEEe
Q psy17689         81 LTYVSWKL-SGFPKNRVIG   98 (216)
Q Consensus        81 ~t~~~~~~-sg~~~~~viG   98 (216)
                      ||++++|. +|||++|||.
T Consensus       136 ~t~~a~k~asg~p~~rvia  154 (154)
T d1y7ta1         136 NALIAYKNAPGLNPRNFTA  154 (154)
T ss_dssp             HHHHHHHTCTTSCGGGEEE
T ss_pred             HHHHHHHHcCCCcHHhccC
Confidence            99999885 8999999984

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=9.9e-26  Score=177.29  Aligned_cols=97  Identities=21%  Similarity=0.265  Sum_probs=86.2

Q ss_pred             cccCCCCCCCceEEEc-CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchhH
Q psy17689          3 TTNDHSSFKGVNVLTR-LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVDI   80 (216)
Q Consensus         3 ~~~d~~~~~~~~v~~~-~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd~   80 (216)
                      +++|++++....+..+ ++|++++|||+||+|+|.|++|||+|+|++..|++|+++++++|.+++| ++++|++|||+|+
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          55 ELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             HHHHTCCTTEEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccccccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence            4567777766666554 4567899999999999999999999999999999999999999999987 5578899999999


Q ss_pred             HHHHHHHhc-CCCCCCEEee
Q psy17689         81 LTYVSWKLS-GFPKNRVIGS   99 (216)
Q Consensus        81 ~t~~~~~~s-g~~~~~viG~   99 (216)
                      |||++||.+ |||++||+|+
T Consensus       135 mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1         135 NCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             HHHHHHHTCTTSCGGGEEEC
T ss_pred             HHHHHHHHcCCCCHHHEeCC
Confidence            999999998 9999999875

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.91  E-value=6.8e-25  Score=172.24  Aligned_cols=108  Identities=34%  Similarity=0.550  Sum_probs=100.8

Q ss_pred             eccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy17689         99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE  178 (216)
Q Consensus        99 ~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~  178 (216)
                      +||.||++||+++||+++|++|++|+++||||||++++|+||+++++|.+...         ..++++++.++++..+++
T Consensus         1 ~Gt~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~   71 (161)
T d1o6za2           1 FGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEF---------SGDEKEQLLGDLQESAMD   71 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTBCCCC---------CHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCCceeeehhhhccccccccc---------chHHHHHHHHHhhhhHHH
Confidence            37999999999999999999999999999999999999999999999877432         357788999999999999


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeee
Q psy17689        179 IIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI  215 (216)
Q Consensus       179 ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l  215 (216)
                      +++.||++.|++|.++++++.+++.+.+.++|+++++
T Consensus        72 i~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~~  108 (161)
T d1o6za2          72 VIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKL  108 (161)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred             HHHhhhhhhhHHHHhhHhhhHhhhhccccceeecccc
Confidence            9999999999999999999999999999999999875

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=7.5e-25  Score=174.72  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=91.3

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      |.|||+|||++||+++|++|++|+++ ||||||++|||+||+++++|.|+.++...      .....+..++..++++.+
T Consensus         2 T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~   75 (173)
T d1y7ta2           2 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM------EWYEKVFIPTVAQRGAAI   75 (173)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH------HHHHHTHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhccc------ccccchhhhhhhhhHHHH
Confidence            89999999999999999999999997 67999999999999999999999998642      222334444444444444


Q ss_pred             -HHhhCCCChhHHHHHHHHHHHHHc--CCCceEEEEeeeC
Q psy17689        180 -IRLKGYTSWAIGLSIASLTYTLLN--NTNKIHAISTLIQ  216 (216)
Q Consensus       180 -i~~Kg~t~~~~a~a~~~ii~ail~--~~~~ilpvS~~l~  216 (216)
                       ...||++.|++|.++++++++++.  |+++++|||++++
T Consensus        76 ~~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~  115 (173)
T d1y7ta2          76 IQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQ  115 (173)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECS
T ss_pred             HHHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEec
Confidence             555778889999999999999998  6789999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.91  E-value=8e-25  Score=172.31  Aligned_cols=89  Identities=36%  Similarity=0.552  Sum_probs=82.6

Q ss_pred             CCceEEEcCCcc-ccCCccEEEEcCCCCCCCCc-----CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHH
Q psy17689         11 KGVNVLTRLNYA-LSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYV   84 (216)
Q Consensus        11 ~~~~v~~~~~~~-~~~daDivvitag~~~k~g~-----~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~   84 (216)
                      ....+..+++++ +++|||+||+|+|.|++||+     +|++++..|++|++++++.+++++|+++++++|||+|+||++
T Consensus        60 ~~~~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~  139 (154)
T d1pzga1          60 TNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKV  139 (154)
T ss_dssp             CCCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHH
T ss_pred             CeeEEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHH
Confidence            345566677775 59999999999999999996     999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCEEee
Q psy17689         85 SWKLSGFPKNRVIGS   99 (216)
Q Consensus        85 ~~~~sg~~~~~viG~   99 (216)
                      +|+.+|||++||||+
T Consensus       140 ~~~~sg~p~~rViG~  154 (154)
T d1pzga1         140 MCEASGVPTNMICGM  154 (154)
T ss_dssp             HHHHHCCCGGGEEEC
T ss_pred             HHHHhCcChhcEecC
Confidence            999999999999995

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.86  E-value=8.6e-22  Score=156.34  Aligned_cols=110  Identities=19%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             chhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689        102 NLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII  180 (216)
Q Consensus       102 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii  180 (216)
                      .||++||+++||+++|++|++|++ +||||||+|+||+||+++++|+++.++.++     .....+++.+.+++++..++
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   76 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMIND-----DAWNRDTFLPTVGKRGAAII   76 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCC-----HHHHHHTHHHHHHTHHHHHH
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhh-----hcchhhhHHHHHHHHHHHHH
Confidence            599999999999999999999998 588999999999999999999999998752     23344677888888888888


Q ss_pred             HhhCCCCh--hHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689        181 RLKGYTSW--AIGLSIASLTYTLLNNTNKIHAISTLIQ  216 (216)
Q Consensus       181 ~~Kg~t~~--~~a~a~~~ii~ail~~~~~ilpvS~~l~  216 (216)
                      ..+|.+++  +.++++..+.+++..+++.++|+|++++
T Consensus        77 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~s~~~~  114 (171)
T d1b8pa2          77 DARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD  114 (171)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECC
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHHhCCCccceeEEEEec
Confidence            88876665  4556777778888889999999999864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.84  E-value=1.1e-21  Score=156.27  Aligned_cols=87  Identities=17%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             CCceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHHH--------------------HHhHHHHHHHHHHHHhhCCCe
Q psy17689         11 KGVNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSLV--------------------ERNVNIFKGIIPNIVKYSPQC   69 (216)
Q Consensus        11 ~~~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dll--------------------~~N~~i~~~i~~~i~~~~p~~   69 (216)
                      ...++..++|+ ++++|||+||+|+|.+++||++|+|++                    .+|++++++++++|+++||++
T Consensus        61 ~~~~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda  140 (169)
T d1s6ya1          61 VPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDA  140 (169)
T ss_dssp             CCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCceeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCe
Confidence            45667777775 569999999999999999998888774                    689999999999999999999


Q ss_pred             EEEEEcCchhHHHHHHHHhcCCCCCCEEee
Q psy17689         70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGS   99 (216)
Q Consensus        70 iiivvtNPvd~~t~~~~~~sg~~~~~viG~   99 (216)
                      +++++|||+|+|||+++|.+  |++||||+
T Consensus       141 ~~i~vtNPvdv~t~~~~k~~--p~~kviGl  168 (169)
T d1s6ya1         141 WLINFTNPAGMVTEAVLRYT--KQEKVVGL  168 (169)
T ss_dssp             EEEECSSSHHHHHHHHHHHC--CCCCEEEC
T ss_pred             EEEEeCChHHHHHHHHHHHC--CCCCEEee
Confidence            99999999999999999994  88999998

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.82  E-value=2.4e-21  Score=153.69  Aligned_cols=100  Identities=21%  Similarity=0.334  Sum_probs=82.5

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccC-CCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      |.|||+||+++||++||++|++|+++|+||| |++++|+||++.+++.            +..++++++.++++++|++|
T Consensus         2 T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~------------~~~~~~~~l~~~v~~~~~ei   69 (169)
T d1mlda2           2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVD------------FPQDQLSTLTGRIQEAGTEV   69 (169)
T ss_dssp             CHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCC------------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCC------------CcHHHHHHHHHHHHHhHHHH
Confidence            7899999999999999999999999999999 5678888887765442            34678899999999999999


Q ss_pred             HHhhCC---CChhHHHHHHHHHHHHHcC---CCceEEEE
Q psy17689        180 IRLKGY---TSWAIGLSIASLTYTLLNN---TNKIHAIS  212 (216)
Q Consensus       180 i~~Kg~---t~~~~a~a~~~ii~ail~~---~~~ilpvS  212 (216)
                      ++.||.   +.+++++++++++.+++++   ...+.+++
T Consensus        70 i~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~  108 (169)
T d1mlda2          70 VKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECS  108 (169)
T ss_dssp             HHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             HHhhcCcChHhHHHHHHHHHHHHHhccccCCceEEEEEe
Confidence            999964   4567888999999998854   34444444

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.9e-21  Score=150.16  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=85.9

Q ss_pred             cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccce-eeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy17689        101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW-SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI  179 (216)
Q Consensus       101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~-S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~i  179 (216)
                      |.|||+||+++||+++|++|++|+++|+||||++++++| |++..             ..+++.+++++.+++|++|+++
T Consensus         2 T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-------------~~~~~~~~~~l~~~v~~~g~~i   68 (167)
T d2cmda2           2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-------------VSFTEQEVADLTKRIQNAGTEV   68 (167)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-------------CCCcHHHHHHHHHHHHhhhhhh
Confidence            789999999999999999999999999999977665555 44321             1245778899999999999999


Q ss_pred             HHhh---CCCChhHHHHHHHHHHHHHcCCCceEEEEee
Q psy17689        180 IRLK---GYTSWAIGLSIASLTYTLLNNTNKIHAISTL  214 (216)
Q Consensus       180 i~~K---g~t~~~~a~a~~~ii~ail~~~~~ilpvS~~  214 (216)
                      ++.|   |+++||+|.++++++++|+++.+...|+++.
T Consensus        69 i~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~  106 (167)
T d2cmda2          69 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVEC  106 (167)
T ss_dssp             HHHHTTSCSCCHHHHHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred             hhhhccCcchHHHHHHHHHHHHHHHhccCCCceEEEEE
Confidence            9876   5788999999999999999988888777764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=6.2e-21  Score=151.78  Aligned_cols=85  Identities=18%  Similarity=0.247  Sum_probs=76.7

Q ss_pred             CCceEEEcCCcc-ccCCccEEEEcCCCCCCCCcCHHHHHH--------------------HhHHHHHHHHHHHHhhCCCe
Q psy17689         11 KGVNVLTRLNYA-LSEGSRIVIVTAGVRQREGESRLSLVE--------------------RNVNIFKGIIPNIVKYSPQC   69 (216)
Q Consensus        11 ~~~~v~~~~~~~-~~~daDivvitag~~~k~g~~r~dll~--------------------~N~~i~~~i~~~i~~~~p~~   69 (216)
                      ...++..++|++ +++|||+||+|+|.+++||++|++++.                    +|+++++++++.|+++||+|
T Consensus        61 ~~~~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A  140 (167)
T d1u8xx1          61 PDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDA  140 (167)
T ss_dssp             TTSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCcceEecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCe
Confidence            345667677765 599999999999999999999999876                    56899999999999999999


Q ss_pred             EEEEEcCchhHHHHHHHHhcCCCCCCEE
Q psy17689         70 TLLIVSNPVDILTYVSWKLSGFPKNRVI   97 (216)
Q Consensus        70 iiivvtNPvd~~t~~~~~~sg~~~~~vi   97 (216)
                      +++++|||+|+||+++++.  +|++|||
T Consensus       141 ~li~~TNPvdv~t~~~~k~--~P~~rVI  166 (167)
T d1u8xx1         141 WMLNYSNPAAIVAEATRRL--RPNSKIL  166 (167)
T ss_dssp             EEEECCSCHHHHHHHHHHH--STTCCEE
T ss_pred             EEEEeCCHHHHHHHHHHHH--CCccccc
Confidence            9999999999999999999  5999997

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1e-20  Score=149.55  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=70.8

Q ss_pred             ceEE-EcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHH--------------------HHHHHHHHHhhCCCeEE
Q psy17689         13 VNVL-TRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNI--------------------FKGIIPNIVKYSPQCTL   71 (216)
Q Consensus        13 ~~v~-~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i--------------------~~~i~~~i~~~~p~~ii   71 (216)
                      ..+. .++++++++|||+||+|+|.|++||++|++++..|..|                    +.++ .++++++|++++
T Consensus        57 ~~~~~t~~~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i-~~~~~~~p~a~~  135 (162)
T d1up7a1          57 FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEY-VDTVRKTSNATI  135 (162)
T ss_dssp             SEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHH-HHHHHHTTCCEE
T ss_pred             ceEEEecCcccccCCCCEEEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHH-hhhhccCCCeEE
Confidence            3444 44456679999999999999999999999888777654                    4444 558899999999


Q ss_pred             EEEcCchhHHHHHHHHhcCCCCCCEEee
Q psy17689         72 LIVSNPVDILTYVSWKLSGFPKNRVIGS   99 (216)
Q Consensus        72 ivvtNPvd~~t~~~~~~sg~~~~~viG~   99 (216)
                      +++|||+|+|||++++.+  |++||||+
T Consensus       136 i~vtNPvdiit~~~~~~~--p~~rviGl  161 (162)
T d1up7a1         136 VNFTNPSGHITEFVRNYL--EYEKFIGL  161 (162)
T ss_dssp             EECSSSHHHHHHHHHHTT--CCSSEEEC
T ss_pred             EEeCCHHHHHHHHHHHhC--CCCCEEee
Confidence            999999999999999995  77899998

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=7e-18  Score=134.23  Aligned_cols=87  Identities=20%  Similarity=0.163  Sum_probs=74.2

Q ss_pred             CCCCceEEEcCCccc-cCCccEEEEcCCC------------------CCCCCcCHHHH--------HHHhHHHHHHHHHH
Q psy17689          9 SFKGVNVLTRLNYAL-SEGSRIVIVTAGV------------------RQREGESRLSL--------VERNVNIFKGIIPN   61 (216)
Q Consensus         9 ~~~~~~v~~~~~~~~-~~daDivvitag~------------------~~k~g~~r~dl--------l~~N~~i~~~i~~~   61 (216)
                      +....++..++|+++ ++|||+|+++++.                  ++++|++|.++        +.+|+++++++++.
T Consensus        58 ~~~~~~i~~~td~~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~  137 (171)
T d1obba1          58 VGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARK  137 (171)
T ss_dssp             TTCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCChhhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHH
Confidence            345677888888765 9999999988654                  45667776665        56899999999999


Q ss_pred             HHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEe
Q psy17689         62 IVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG   98 (216)
Q Consensus        62 i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG   98 (216)
                      |+++||+++++++|||+|+||+++++.+++   |+||
T Consensus       138 i~~~~p~a~~i~~TNPvdv~t~~~~k~~~~---k~iG  171 (171)
T d1obba1         138 IEKLSPKAWYLQAANPIFEGTTLVTRTVPI---KAVG  171 (171)
T ss_dssp             HHHHCTTCEEEECSSCHHHHHHHHHHHSCS---EEEE
T ss_pred             HHHHCcCeEEEEECChHHHHHHHHHHhcCC---CccC
Confidence            999999999999999999999999999987   8887

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.78  E-value=0.12  Score=41.19  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeeccc
Q psy17689        108 FRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNLRE  151 (216)
Q Consensus       108 ~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l~~  151 (216)
                      +.+.+|+.+|++.+++...+.| ||    +.++.+++++|+++..
T Consensus         6 ~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~G~D~~p   46 (253)
T d1up7a2           6 FIREIAEMFSARLEDVFLKYYGLNH----LSFIEKVFVKGEDVTE   46 (253)
T ss_dssp             HHHHHHHHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHH
T ss_pred             HHHHHHHHhCCCHHHcEEEEEEECC----hhheEeeEECCEechH
Confidence            6788999999999999999999 99    8899999999987653

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.86  E-value=0.16  Score=40.77  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             HHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeeccc
Q psy17689        108 FRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNLRE  151 (216)
Q Consensus       108 ~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l~~  151 (216)
                      +.+.+|+.||+++++|+..+.| ||    +.++.+++.+|+++..
T Consensus         6 ~~~~la~~Lg~~~~~i~~~~~GlNH----~~W~~~~~~~G~D~~p   46 (270)
T d1s6ya2           6 MRMGVAKLLGVDADRVHIDFAGLNH----MVFGLHVYLDGVEVTE   46 (270)
T ss_dssp             HHHHHHHHHTSCGGGEEEEEEEETT----EEEEEEEEETTEECHH
T ss_pred             HHHHHHHHcCCCHHHcEEEEEeeCC----HhHeeeeEECCccccH
Confidence            4677999999999999999999 99    7899999999988664

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=86.86  E-value=0.29  Score=39.95  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=33.1

Q ss_pred             HHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeecc
Q psy17689        111 LLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNLR  150 (216)
Q Consensus       111 ~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l~  150 (216)
                      .+|+.||+++++|+.-+.| ||    +-++.+++++|+++.
T Consensus        10 ~ia~~Lgv~~~di~~~~~GLNH----~~W~~~v~~~G~D~~   46 (308)
T d1obba2          10 EIVEKLGLEEEKVDWQVAGVNH----GIWLNRFRYNGGNAY   46 (308)
T ss_dssp             HHHHHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECH
T ss_pred             HHHHHcCCCHHHceEEEEeecc----hhhheeeeECCEecc
Confidence            4899999999999999999 99    889999999999754

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.33  E-value=0.34  Score=38.87  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             HHHHHHHHhCCCCC-ceeEEEEc-cCCCCcccceeeee-ECCeeccc
Q psy17689        108 FRVLLAQKLGLSPE-SVYGFIIG-EHGDSSVPVWSGVN-VAGVNLRE  151 (216)
Q Consensus       108 ~~~~la~~l~v~~~-~v~~~v~G-~HGds~vp~~S~~~-v~g~~l~~  151 (216)
                      ++..+|+.||++|. +|+.-+.| ||    +.+|.+++ .+|+++..
T Consensus         8 ~~~~ia~~Lgv~~~~ev~~~~~GLNH----~~w~~~v~~~~G~D~~p   50 (276)
T d1u8xx2           8 IEDRMAQILGLSSRKEMKVRYYGLNH----FGWWTSIQDQEGNDLMP   50 (276)
T ss_dssp             HHHHHHHHHTCSCGGGEEEEEEEETT----EEEEEEEEETTCCBCHH
T ss_pred             HHHHHHHHcCCCchhceEEEEEeecc----HHHHhheeccCCEECHH
Confidence            67889999999874 79999999 99    77999998 68987553

>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=84.95  E-value=1.7  Score=31.92  Aligned_cols=79  Identities=5%  Similarity=-0.054  Sum_probs=53.5

Q ss_pred             cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccch
Q psy17689         24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNL  103 (216)
Q Consensus        24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~l  103 (216)
                      -.++|+++|+...            ......+.++++.+++.+++.+ +++.-|...-.+-.++..|.+  -+|+.|+..
T Consensus        84 ~~~a~vvvicssd------------~~y~~~~~~~~~aLk~ag~~~~-vlaGg~~~~~d~~~l~~aGVd--~~i~~G~d~  148 (163)
T d7reqb2          84 KSGAQVADLCSSA------------KVYAQQGLEVAKALKAAGAKAL-YLSGAFKEFGDDAAEAEKLID--GRLFMGMDV  148 (163)
T ss_dssp             HHTCSEEEEECCH------------HHHHHHHHHHHHHHHHTTCSEE-EEESCGGGGGGGHHHHHHHCC--EEECTTCCH
T ss_pred             hCCCCEEEEecCc------------cchHHHHHHHHHHHHhccccee-EEEecCCCcccHHHHHhCCCC--eEecCCCcH
Confidence            4689999998641            3456788899999999998755 556655443333345556765  688888855


Q ss_pred             hHHHHHHHHHHHhCCC
Q psy17689        104 DSMRFRVLLAQKLGLS  119 (216)
Q Consensus       104 ds~R~~~~la~~l~v~  119 (216)
                      -  .+-..+-+++|+.
T Consensus       149 ~--~~l~~l~~~lGva  162 (163)
T d7reqb2         149 V--DTLSSTLDILGVA  162 (163)
T ss_dssp             H--HHHHHHHHHTTCC
T ss_pred             H--HHHHHHHHHhcCC
Confidence            4  3455566778875