Psyllid ID: psy17692

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
LYRSGKTVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTVSSGKSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKAHS
Secondary Structure (PSIPRED)
cccccccccccccEEEEccccccccEEcccccEEEccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHccEEccEEEEcccccccccEEEEccEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccEEEEHccccccccccccccEccHHHcccccccccccccccccEcccccEEEEHEcccccccccccccccccccccccccHHccccccccEEEEEcccccccccEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHcEEEEEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHcEEEEEEccEEEEccc
Coil and Loop (DISEMBL)
lyrsgktvssrkncivrkelyrpertvssgkncivpkelfrpertvssrknrpkrtvssgkscivrkelyrpertvssrkncivpkelycpeiedreqdrrkpaihllghhgieeevflslpcvmadngvthivnqplTQEEIEKLKKSAQAIKEVFLSLpcvmadngvthivnqplTQEEIEKLKKSAQAIKIRDFvkcqvcgkvykahs
Flexible Loop (DISEMBL)
lyrsgktvssrkncivrkelyrpertvssgkncivpkelfrpertvssrknrpkrtvssgkscivrkelyrpertvssrkncivpkelycpeiedrEQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKAHS
Low Complexity Region (SEG)
LYRSGKTVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTVSSGKSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKAHS
Disordered region (IsUnstruct)
*************CIVRKELY***********CIV***************************CIVRKELYR*******RKNCIVPKELYCPEI*********PAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVY****
Disordered Region (DISOPRED)
********SSRKNCIVRKELYRPERTVSSGKNCIVPKELFR********************SCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVY****
Disordered Region (DISEMBL)
***********KNCIVRKELYRPERTVSSGKNCIVPKELFRPER****************KSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKAHS
Disordered Region (DISPRO)
*****KTVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRP****************SGKSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LYRSGKTVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTVSSGKSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIRDFVKCQVCGKVYKAHS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q95028	332	L-lactate dehydrogenase O	yes	N/A	0.236	0.150	0.56	8e-10
Q4R816	381	L-lactate dehydrogenase A	N/A	N/A	0.227	0.125	0.520	3e-09
Q27888	333	L-lactate dehydrogenase O	yes	N/A	0.227	0.144	0.520	2e-08
Q9PT42	333	L-lactate dehydrogenase B	N/A	N/A	0.227	0.144	0.520	2e-08
Q98SK9	333	L-lactate dehydrogenase B	N/A	N/A	0.227	0.144	0.5	3e-08
P42119	334	L-lactate dehydrogenase B	N/A	N/A	0.227	0.143	0.5	3e-08
Q9YGL2	333	L-lactate dehydrogenase B	N/A	N/A	0.227	0.144	0.520	4e-08
P42120	334	L-lactate dehydrogenase A	N/A	N/A	0.227	0.143	0.5	5e-08
P00337	333	L-lactate dehydrogenase B	yes	N/A	0.222	0.141	0.479	5e-08
P13743	333	L-lactate dehydrogenase B	N/A	N/A	0.222	0.141	0.479	5e-08

>sp|Q95028|LDH_DROME L-lactate dehydrogenase OS=Drosophila melanogaster GN=ImpL3 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +LG HGI+++VFLSLPCV+  NGVT +V Q LT  E+E+L+KSA  + +V
Sbjct: 277 VLGEHGIDKDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMSDV 326

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 7

>sp|Q4R816|LDH6B_MACFA L-lactate dehydrogenase A-like 6B OS=Macaca fascicularis GN=LDHAL6B PE=2 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 39/48 (81%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI+EEVFLS+PC++ +NG+TH++   LT EE ++LKKSA+ + E+
Sbjct: 328 GLYGIDEEVFLSIPCILGENGITHLIKIKLTPEEEDRLKKSAKTLWEI 375

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q27888|LDH_CAEEL L-lactate dehydrogenase OS=Caenorhabditis elegans GN=ldh-1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G HGI ++V+LSLP V+   G+TH+V Q LT+ E++KL  SA+A+ EV
Sbjct: 280 GFHGINDDVYLSLPVVLGSAGLTHVVKQQLTEAEVQKLHNSAKALLEV 327

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9PT42|LDHB_TRASC L-lactate dehydrogenase B chain OS=Trachemys scripta GN=LDHB PE=2 SV=3

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPCV++ +G+T ++NQ L  EE+ +LKKSA  +  +
Sbjct: 279 GMYGIENEVFLSLPCVLSASGLTSVINQKLKDEEVAQLKKSADTLWGI 326

Trachemys scripta (taxid: 34903)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q98SK9|LDHB_PELSJ L-lactate dehydrogenase B chain OS=Pelodiscus sinensis japonicus GN=LDHB PE=2 SV=3

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPCV++ +G+T ++NQ L  EE+ +L+KSA  +  +
Sbjct: 279 GMYGIENEVFLSLPCVLSASGLTSVINQKLKDEEVAQLRKSADTLWSI 326

Pelodiscus sinensis japonicus (taxid: 34908)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P42119|LDHB_XENLA L-lactate dehydrogenase B chain OS=Xenopus laevis GN=ldhb PE=2 SV=2

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPCV+  NG+T ++NQ L  +E+ +L+KSA+ +  +
Sbjct: 280 GMYGIETEVFLSLPCVLNGNGLTSVINQKLKDDEVGQLQKSAETLWGI 327

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9YGL2|LDHB_ANGRO L-lactate dehydrogenase B chain OS=Anguilla rostrata GN=ldhb PE=2 SV=3

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI +EV+LSLPCV+ + GV  +VN  LT EEI +LKKSA  +  +
Sbjct: 279 GMYGIGDEVYLSLPCVLNNGGVNSVVNMTLTDEEIAQLKKSADTLWGI 326

Anguilla rostrata (taxid: 7938)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P42120|LDHA_XENLA L-lactate dehydrogenase A chain OS=Xenopus laevis GN=ldha PE=2 SV=2

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPCV+  NG+T ++NQ L   E+ +L+KSA+ +  +
Sbjct: 280 GMYGIETEVFLSLPCVLNGNGLTSVINQKLKDNEVGQLQKSAETLWSI 327

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P00337|LDHB_CHICK L-lactate dehydrogenase B chain OS=Gallus gallus GN=LDHB PE=1 SV=3

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE +VFLSLPCV++ +G+T ++NQ L  +E+ +LKKSA  +  +
Sbjct: 279 GTYGIENDVFLSLPCVLSASGLTSVINQKLKDDEVAQLKKSADTLWSI 326

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P13743|LDHB_ANAPL L-lactate dehydrogenase B chain OS=Anas platyrhynchos GN=LDHB PE=1 SV=2

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE +VFLSLPCV++ +G+T ++NQ L  +E+ +LKKSA  +  +
Sbjct: 279 GTYGIENDVFLSLPCVLSASGLTSVINQKLKDDEVAQLKKSADTLWSI 326

In duck lens LDH-B is used as a crystallin: epsilon-crystallin.

Anas platyrhynchos (taxid: 8839)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
289740453	332	lactate dehydrogenase [Glossina morsitan	0.236	0.150	0.58	2e-09
302823291	321	hypothetical protein SELMODRAFT_236713 [	0.270	0.177	0.548	2e-09
302772721	340	hypothetical protein SELMODRAFT_92401 [S	0.218	0.135	0.625	2e-09
195377068	332	GJ11996 [Drosophila virilis] gi|19415447	0.236	0.150	0.6	7e-09
307169552	332	L-lactate dehydrogenase [Camponotus flor	0.227	0.144	0.604	8e-09
322785993	86	hypothetical protein SINV_10962 [Solenop	0.227	0.558	0.583	2e-08
307193418	332	L-lactate dehydrogenase [Harpegnathos sa	0.227	0.144	0.604	2e-08
195337911	332	GM13843 [Drosophila sechellia] gi|194128	0.251	0.159	0.528	2e-08
195126981	332	GI13222 [Drosophila mojavensis] gi|19391	0.236	0.150	0.54	2e-08
125980398	332	GA10121 [Drosophila pseudoobscura pseudo	0.236	0.150	0.56	3e-08

>gi|289740453|gb|ADD18974.1| lactate dehydrogenase [Glossina morsitans morsitans]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 41/50 (82%)

Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +LG HGI+++VFLSLPCV+  NGVTH++ Q LT +EI++L+KSA  + EV
Sbjct: 277 VLGEHGIDKDVFLSLPCVLNANGVTHMIRQILTADEIQQLQKSANIMAEV 326

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|302823291|ref|XP_002993299.1| hypothetical protein SELMODRAFT_236713 [Selaginella moellendorffii] gi|300138872|gb|EFJ05624.1| hypothetical protein SELMODRAFT_236713 [Selaginella moellendorffii]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 5/62 (8%)

Query: 100 RRKPAIHLL-----GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           R + AIH +     G HGIE +VFLSLPCV+  NGV HIV Q LT+ E+ KLK+SAQ++ 
Sbjct: 254 RDEKAIHPVSIIAKGRHGIEHDVFLSLPCVLGRNGVLHIVEQTLTENEVLKLKESAQSLW 313

Query: 155 EV 156
           +V
Sbjct: 314 DV 315

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302772721|ref|XP_002969778.1| hypothetical protein SELMODRAFT_92401 [Selaginella moellendorffii] gi|300162289|gb|EFJ28902.1| hypothetical protein SELMODRAFT_92401 [Selaginella moellendorffii]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 38/48 (79%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G HGIE +VFLSLPCV+  NGV HIV Q LT+ E+ KLK+SAQ++ +V
Sbjct: 287 GRHGIEHDVFLSLPCVLGRNGVLHIVEQTLTENEVLKLKESAQSLWDV 334

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195377068|ref|XP_002047314.1| GJ11996 [Drosophila virilis] gi|194154472|gb|EDW69656.1| GJ11996 [Drosophila virilis]

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 39/50 (78%)

Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +LG HGI+++VFLSLPCV+  NGVT +V Q LT  EIE+L+KSA  + EV
Sbjct: 277 VLGEHGIDKDVFLSLPCVLNANGVTSVVKQILTNTEIEQLQKSANIMAEV 326

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169552|gb|EFN62194.1| L-lactate dehydrogenase [Camponotus floridanus]

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 37/48 (77%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G+HGI+EEVFLSLPC + ++GVTHIV Q LT +E+  L KSA  + EV
Sbjct: 279 GYHGIKEEVFLSLPCTLGEDGVTHIVRQKLTDDELALLHKSAAMMHEV 326

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785993|gb|EFZ12609.1| hypothetical protein SINV_10962 [Solenopsis invicta]

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           GHHGI EEVFLSLPC + ++GVTHIV Q LT +E+  L KS+  +  V
Sbjct: 33  GHHGINEEVFLSLPCTLGEDGVTHIVQQKLTDDELASLHKSSVMMHTV 80

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193418|gb|EFN76243.1| L-lactate dehydrogenase [Harpegnathos saltator]

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 37/48 (77%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           GHHGI EEVFLSLPC + ++GVT IV Q LT EE+  L+KS+  ++EV
Sbjct: 279 GHHGINEEVFLSLPCTLGEDGVTLIVQQKLTYEELALLQKSSAKMQEV 326

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337911|ref|XP_002035569.1| GM13843 [Drosophila sechellia] gi|194128662|gb|EDW50705.1| GM13843 [Drosophila sechellia]

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +I +LG HGI+++VFLSLPC++  NGVT +V Q LT  E+E+L+KSA  + +V
Sbjct: 274 SISVLGEHGIDKDVFLSLPCILNANGVTSVVKQILTPTEVEQLQKSANIMSDV 326

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126981|ref|XP_002007947.1| GI13222 [Drosophila mojavensis] gi|193919556|gb|EDW18423.1| GI13222 [Drosophila mojavensis]

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 40/50 (80%)

Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +LG HGI+++VFLSLPCV+  NGVT +V Q LT +E+++L+KSA  + +V
Sbjct: 277 VLGEHGIDKDVFLSLPCVLNANGVTSVVKQILTDDEVQQLQKSANIMADV 326

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125980398|ref|XP_001354223.1| GA10121 [Drosophila pseudoobscura pseudoobscura] gi|54642529|gb|EAL31276.1| GA10121 [Drosophila pseudoobscura pseudoobscura]

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +LG HGI+++VFLSLPC++  NGVT +V Q LT  EIE+L+KSA  + +V
Sbjct: 277 VLGEHGIDKDVFLSLPCILNANGVTSVVKQILTATEIEQLQKSATIMADV 326

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
FB|FBgn0001258	332	ImpL3 "Ecdysone-inducible gene	0.236	0.150	0.56	6e-09
WB|WBGene00002262	333	ldh-1 [Caenorhabditis elegans	0.227	0.144	0.520	2.5e-07
UNIPROTKB|Q9BYZ2	381	LDHAL6B "L-lactate dehydrogena	0.227	0.125	0.5	6.1e-07
UNIPROTKB|J9NSR4	328	J9NSR4 "L-lactate dehydrogenas	0.236	0.152	0.48	1.1e-06
UNIPROTKB|Q5E9B1	334	LDHB "L-lactate dehydrogenase	0.213	0.134	0.533	1.1e-06
UNIPROTKB|J9P3N9	334	J9P3N9 "L-lactate dehydrogenas	0.227	0.143	0.479	1.1e-06
UNIPROTKB|J9JHZ0	330	J9JHZ0 "L-lactate dehydrogenas	0.227	0.145	0.479	1.5e-06
UNIPROTKB|P00337	333	LDHB "L-lactate dehydrogenase	0.213	0.135	0.511	1.5e-06
UNIPROTKB|E2R761	334	LDHB "Uncharacterized protein"	0.227	0.143	0.479	1.5e-06
UNIPROTKB|P07195	334	LDHB "L-lactate dehydrogenase	0.227	0.143	0.479	1.5e-06

FB|FBgn0001258 ImpL3 "Ecdysone-inducible gene L3" [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:   107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             +LG HGI+++VFLSLPCV+  NGVT +V Q LT  E+E+L+KSA  + +V
Sbjct:   277 VLGEHGIDKDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMSDV 326

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISS;NAS;TAS

GO:0006096 "glycolysis" evidence=IEA;NAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

WB|WBGene00002262 ldh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 137 (53.3 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             G HGI ++V+LSLP V+   G+TH+V Q LT+ E++KL  SA+A+ EV
Sbjct:   280 GFHGINDDVYLSLPVVLGSAGLTHVVKQQLTEAEVQKLHNSAKALLEV 327

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

UNIPROTKB|Q9BYZ2 LDHAL6B "L-lactate dehydrogenase A-like 6B" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             G +GI+EEVFLS+PC++ +NG+T+++   LT EE   LKKSA+ + E+
Sbjct:   328 GLYGIDEEVFLSIPCILGENGITNLIKIKLTPEEEAHLKKSAKTLWEI 375

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J9NSR4 J9NSR4 "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query:   107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             L G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct:   272 LKGMYGIENEVFLSLPCILNTPGLTSVINQKLKDDEVAQLKKSADTLWDI 321

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5E9B1 LDHB "L-lactate dehydrogenase B chain" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 153
             G +GIE EVFLSLPC++   G+T ++NQ L  EE+ +LKKSA  +
Sbjct:   280 GMYGIENEVFLSLPCILNARGLTSVINQKLKDEEVAQLKKSADTL 324

GO:0005829 "cytosol" evidence=TAS

GO:0004459 "L-lactate dehydrogenase activity" evidence=EXP

GO:0005739 "mitochondrion" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P3N9 J9P3N9 "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct:   280 GMYGIENEVFLSLPCILNTRGLTSVINQKLKDDEVAQLKKSADTLWDI 327

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9JHZ0 J9JHZ0 "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct:   276 GMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 323

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00337 LDHB "L-lactate dehydrogenase B chain" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 23/45 (51%), Positives = 35/45 (77%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 153
             G +GIE +VFLSLPCV++ +G+T ++NQ L  +E+ +LKKSA  +
Sbjct:   279 GTYGIENDVFLSLPCVLSASGLTSVINQKLKDDEVAQLKKSADTL 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E2R761 LDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct:   280 GMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 327

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P07195 LDHB "L-lactate dehydrogenase B chain" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query:   109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
             G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct:   280 GMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 327

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006089 "lactate metabolic process" evidence=IEA

GO:0019674 "NAD metabolic process" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-17
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	2e-13
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	4e-12
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	5e-10
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	6e-10
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	3e-09
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-09
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	4e-09
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	4e-09
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	7e-09
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	2e-08
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	6e-08
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	6e-08
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	7e-08
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	2e-07
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	3e-07
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	4e-07
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	5e-07
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	6e-07
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	8e-07
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	1e-06
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	1e-06
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	9e-06
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	3e-05
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	3e-05
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	3e-04
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	5e-04
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	0.002

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           G HGIE+EVFLSLPC++ +NG+TH++ QPLT+EE EKL+KSA  + EV 
Sbjct: 262 GLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQ 310

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 96  REQDRRKP-AIHLLGHHGI-EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 153
           R+Q R  P ++   G HGI E +VFLSLP  +  NGV  +VN  LT EE E+L+KSA+ +
Sbjct: 282 RDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTL 341

Query: 154 KEV 156
            EV
Sbjct: 342 WEV 344

Length = 350

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
            EVFLSLPC++ +NG+TH++ QPLT+EE EKL+KSA  +
Sbjct: 268 DEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTL 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
           + +L G +GI++ V++ +P V+  NGV  I+  PL+ EE E  +KSA+ +K+
Sbjct: 249 SAYLDGEYGIKD-VYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 155 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +VFLSLP  +  NGV  +VN  LT EE E+L+KSA+ +
Sbjct: 304 DVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTL 341

Length = 350

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           IK+V++ +P V+  NGV  I+  PL+ EE E  +KSA+ +K
Sbjct: 258 IKDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLK 298

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           G +GI++ V LSLPC++  +GV  ++  PL++EE E L+ SA+ +KE   SL
Sbjct: 258 GQYGIKD-VALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL 308

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
            E+V LS+P V+   GV  I+  PLT++E  KL+KSA+A+KEV 
Sbjct: 256 IEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL 299

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           L G +G+ + V LSLP V+   G+  ++  PL + E+EKL KSA+AI+E 
Sbjct: 257 LSGEYGLSD-VALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRET 305

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
           + +L G +GI++ +F+ +P V+  NGV  I+   LT EE E   KS +++KE
Sbjct: 247 SAYLEGEYGIKD-IFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKE 297

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           G  GI ++V +S+PC++  NGV   +   LT  E+EKL+KSA  +K+  
Sbjct: 214 GQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKEL 262

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 111 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVT 170
            GI +     +  ++ D      V   L+ E           + +V LSLP V+   G+ 
Sbjct: 230 AGIAKSASRLIKAILLDERSILPVCTLLSGE---------YGLSDVALSLPTVIGAKGIE 280

Query: 171 HIVNQPLTQEEIEKLKKSAQAIK 193
            ++  PL + E+EKL KSA+AI+
Sbjct: 281 RVLEIPLDEWELEKLHKSAKAIR 303

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           E++V++ +P ++  NGV  ++   LT+EE EK +KSA  IKE  
Sbjct: 261 EKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENI 304

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I++V LS+P V+   GV  I+  PLT++E  KL+KSA+A+K
Sbjct: 256 IEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALK 296

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           IK+V LSLPC++  +GV  ++  PL++EE E L+ SA+ +K
Sbjct: 262 IKDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLK 302

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           IK++F+ +P V+  NGV  I+   LT EE E   KS +++K
Sbjct: 256 IKDIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVK 296

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            K+V++ +P ++  NGV  ++   LT+EE EK +KSA  IK
Sbjct: 261 EKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIK 301

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
           +++L G +G+E+ V+  +P V+  NGV  I+   L+ +E EKL KSA+ +K+
Sbjct: 252 SVYLDGEYGVED-VYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKK 302

Length = 313

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +L G +G EE+V++ +P V+  NG+  IV  PL  +E +K   SA  +KE+
Sbjct: 260 YLEGQYG-EEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEI 309

Length = 315

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 98  QDRRK---PAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           +DR++    A +L G +GI+  +++ +P ++  NGV HI    L Q E+  L KSA+ + 
Sbjct: 241 KDRKRVLPCAAYLDGQYGIDG-IYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVD 299

Query: 155 EV 156
           E 
Sbjct: 300 EN 301

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 124 VMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIE 183
           ++ D G    V                    +V +S+PC++  NGV   +   LT  E+E
Sbjct: 198 LLNDEGEILPVGVRN--------NGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELE 249

Query: 184 KLKKSAQAIK 193
           KL+KSA  +K
Sbjct: 250 KLQKSADTLK 259

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 98  QDRRK--PAIHLL-GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           +D+++  P    L G +G+++ V++ +P  +  NGV  I+   L  EE     KS +A+K
Sbjct: 242 KDKKRVLPCSAYLEGEYGVKD-VYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVK 300

Query: 155 EV 156
           ++
Sbjct: 301 KL 302

Length = 307

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +++V+  +P V+  NGV  I+   L+ +E EKL KSA+ +K
Sbjct: 261 VEDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELK 301

Length = 313

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            ++V++ +P V+  NG+  IV  PL  +E +K   SA  +K
Sbjct: 267 EEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLK 307

Length = 315

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +K+V++ +P  +  NGV  I+   L  EE     KS +A+K
Sbjct: 260 VKDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVK 300

Length = 307

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I  +++ +P ++  NGV HI    L Q E+  L KSA+ + 
Sbjct: 259 IDGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVD 299

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF 157
           G++G  ++++ S+P V+  +GV  +V   PL   E EKL+KSA  +K+  
Sbjct: 117 GYYGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEI 166

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLP 161
           GH  I    ++  P V+  NGV  I+   LT EE +K  +S + +K +   L 
Sbjct: 273 GHKDI----YMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLEALLK 321

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG1495|consensus	332		100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	99.97
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	99.97
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	99.97
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	99.97
PLN00135	309	malate dehydrogenase	99.96
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.96
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	99.96
PLN02602	350	lactate dehydrogenase	99.96
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	99.96
PLN00112	444	malate dehydrogenase (NADP); Provisional	99.96
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	99.96
PTZ00117	319	malate dehydrogenase; Provisional	99.96
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	99.96
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	99.95
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	99.95
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	99.95
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	99.95
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	99.95
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	99.95
PRK05442	326	malate dehydrogenase; Provisional	99.95
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.95
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	99.95
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	99.95
PRK06223	307	malate dehydrogenase; Reviewed	99.95
PTZ00325	321	malate dehydrogenase; Provisional	99.94
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	99.93
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	99.93
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	99.93
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.93
PRK05086	312	malate dehydrogenase; Provisional	99.92
PLN00106	323	malate dehydrogenase	99.91
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	99.91
KOG1494|consensus	345		99.08
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.01
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.95
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	98.94
PTZ00117	319	malate dehydrogenase; Provisional	98.87
KOG1495|consensus	332		98.87
PLN02602	350	lactate dehydrogenase	98.87
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.87
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	98.86
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.85
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.85
KOG1496|consensus	332		98.8
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.79
PTZ00325	321	malate dehydrogenase; Provisional	98.78
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.77
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.74
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	98.74
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.72
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.72
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	98.72
PLN00135	309	malate dehydrogenase	98.72
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.71
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.69
PLN00106	323	malate dehydrogenase	98.69
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.68
PRK05086	312	malate dehydrogenase; Provisional	98.66
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.65
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.65
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	98.63
PRK05442	326	malate dehydrogenase; Provisional	98.57
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.52
PRK06223	307	malate dehydrogenase; Reviewed	98.47
PLN00112	444	malate dehydrogenase (NADP); Provisional	98.34
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	98.3
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.26
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	98.25
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.54
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	95.35
PRK15076	431	alpha-galactosidase; Provisional	94.27
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	90.81
KOG1494|consensus	345		87.87
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	84.0
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	83.69

>KOG1495|consensus

Probab=100.00  E-value=5.1e-35  Score=253.19  Aligned_cols=141  Identities=31%  Similarity=0.425  Sum_probs=131.5

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .|..--|++||+||||+|||||+|  |.|||+|||  |+|+++||++|.++      ||||+.||.||.+         +
T Consensus       139 PVDilTYv~wKLSgfP~nRViGsG--cnLDsaRFr--yLi~~~Lg~~pss~hgwIiGEHGdSsV~vWSgv---------n  205 (332)
T KOG1495|consen  139 PVDILTYVTWKLSGFPKNRVIGSG--CNLDSARFR--YLIGNRLGVHPSSCHGWIIGEHGDSSVPVWSGV---------N  205 (332)
T ss_pred             chHHHHHHHHHHcCCcccceeccC--cCccHHHHH--HHHHHHhCCCcccceEEEeeccCCccceecccc---------c
Confidence            355667899999999999999999  999999999  99999999999999      9999999999999         9


Q ss_pred             ccCcccccccc--------------------------------------------chhhccCCceeEeE-eecCcccccc
Q psy17692         81 NCIVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEE  115 (211)
Q Consensus        81 v~g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~  115 (211)
                      ++|+|+.++.+                                            ++|.+|.+++.|++ .++|.|||.+
T Consensus       206 iAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswaIglsva~l~~ail~n~~~i~~Vst~~kg~~gI~~  285 (332)
T KOG1495|consen  206 IAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNLRRIHPVSTMVKGLYGIDD  285 (332)
T ss_pred             ccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcCceeeeeeccccccCCCC
Confidence            99999988876                                            46889999999999 5999999988


Q ss_pred             ceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        116 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       116 dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |||+|+||++|++|+.++++..|+++|.++|..|++.+.+++.++
T Consensus       286 dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l  330 (332)
T KOG1495|consen  286 DVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSL  330 (332)
T ss_pred             ceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999988887654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=5.7e-34  Score=253.24  Aligned_cols=141  Identities=24%  Similarity=0.326  Sum_probs=130.5

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .|+..-|.+||.||||++||||+|  |+|||+|||  ++||+++++++++|      ||||+|||+||++         +
T Consensus       120 PvD~~ty~~~k~sg~p~~rvig~g--t~LDsaR~~--~~lae~~~v~~~~V~~~ViGeHGdt~vp~~S~a---------~  186 (313)
T COG0039         120 PVDILTYIAMKFSGFPKNRVIGSG--TVLDSARFR--TFLAEKLGVSPKDVHAYVIGEHGDTMVPLWSQA---------T  186 (313)
T ss_pred             cHHHHHHHHHHhcCCCccceeccc--chHHHHHHH--HHHHHHhCCChhHceeeEeccCCCceEEeeeee---------e
Confidence            467778899999999999999999  999999999  99999999999999      9999999999999         8


Q ss_pred             ccCcccccccc-----------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692         81 NCIVPKELYCP-----------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF  118 (211)
Q Consensus        81 v~g~pv~~~~~-----------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~  118 (211)
                      ++|+|+.+++.                                         +++++|+++++|++ +++|+||+ +|+|
T Consensus       187 v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~~~~ail~d~~~vl~~s~~l~G~yg~-~dv~  265 (313)
T COG0039         187 VGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALARMVEAILRDEKRVLPVSVYLDGEYGV-EDVY  265 (313)
T ss_pred             ECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHHHHHHHHcCCCceEEEEEeecCccCc-CCeE
Confidence            89988877652                                         46788999999999 79999998 8999


Q ss_pred             eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccc
Q psy17692        119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLP  161 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP  161 (211)
                      +|+|+++|++|+.++++..|+++|+++|..|++.+++.++++.
T Consensus       266 ~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~~  308 (313)
T COG0039         266 FGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELVK  308 (313)
T ss_pred             EEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888876554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=99.97  E-value=1.2e-31  Score=238.70  Aligned_cols=136  Identities=24%  Similarity=0.339  Sum_probs=121.2

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |++--+++||.||||++||||+|  |.|||+|||  ++||+++|+++++|      ||||+|||+||++         ++
T Consensus       122 vDv~t~~~~k~sg~p~~rviG~g--t~LDs~R~~--~~la~~l~v~~~~V~~~ViGeHGds~vp~wS~~---------~v  188 (307)
T cd05290         122 LDIAVYIAATEFDYPANKVIGTG--TMLDTARLR--RIVADKYGVDPKNVTGYVLGEHGSHAFPVWSLV---------NI  188 (307)
T ss_pred             HHHHHHHHHHHhCcChhheeccc--chHHHHHHH--HHHHHHhCCCcccEEEEEEecCCCceEEeeeee---------EE
Confidence            34445689999999999999999  999999999  99999999999999      9999999999999         77


Q ss_pred             cCcccccccc------------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692         82 CIVPKELYCP------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF  118 (211)
Q Consensus        82 ~g~pv~~~~~------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~  118 (211)
                      +|.|+..|++                                          +++..|+++++|++ +++|+||+ +|+|
T Consensus       189 ~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~~ii~ail~d~~~v~~vsv~~~G~yg~-~~v~  267 (307)
T cd05290         189 AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSASRLIKAILLDERSILPVCTLLSGEYGL-SDVA  267 (307)
T ss_pred             CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCccCC-CCEE
Confidence            7777644320                                          45778889999998 68999997 8999


Q ss_pred             eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      +|+||+||++|+.+++++.|+++|++.|..|++.+++.+
T Consensus       268 ~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~~~  306 (307)
T cd05290         268 LSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETI  306 (307)
T ss_pred             EEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998887653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=99.97  E-value=2.4e-31  Score=236.32  Aligned_cols=141  Identities=21%  Similarity=0.300  Sum_probs=125.4

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR   71 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~   71 (211)
                      +++.+..+|      +.+||.+|||++||||+|  |.|||+||+  ++||+++++++++|      ||||+|+|+||++ 
T Consensus       111 ~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g--~~lds~R~~--~~la~~l~v~~~~v~~~v~GeHg~s~~~~wS~~-  185 (305)
T TIGR01763       111 NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQA--GVLDSARFR--TFIAMELGVSVQDVTACVLGGHGDAMVPLVRYS-  185 (305)
T ss_pred             CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEec--cchHHHHHH--HHHHHHhCcCHHHeeeeEEecCCCcEEeeeeee-
Confidence            344555555      578999999999999999  999999999  99999999999999      9999999999999 


Q ss_pred             cccccccccccCcccccccc---------------------------------------chhhccCCceeEeE-eecCcc
Q psy17692         72 PERTVSSRKNCIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHH  111 (211)
Q Consensus        72 i~~~il~~~v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~y  111 (211)
                              +++|+|+.++..                                       ++|..|+++++|++ +++|+|
T Consensus       186 --------~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~~~~~i~~ai~~~~~~v~~~s~~~~~~y  257 (305)
T TIGR01763       186 --------TVAGIPVADLISAERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPCAAYLDGQY  257 (305)
T ss_pred             --------EECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEecccC
Confidence                    788888755432                                       46778888999999 689999


Q ss_pred             ccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        112 GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       112 Gi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+ +|+|+|+||+||++|+.+++++.|+++|++.|..|++.+++.++
T Consensus       258 g~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~~~  303 (305)
T TIGR01763       258 GI-DGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCK  303 (305)
T ss_pred             CC-CceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99 89999999999999999999999999999999999988877654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=99.97  E-value=4.6e-31  Score=234.04  Aligned_cols=137  Identities=25%  Similarity=0.354  Sum_probs=122.2

Q ss_pred             CCceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692          4 SGKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR   71 (211)
Q Consensus         4 ~~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~   71 (211)
                      +|+.+..+|+      .+++.+|||++||||+|  |.|||+||+  ++||+++++++++|      |||++|+|+||++ 
T Consensus       106 ~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~g--t~LDs~R~~--~~la~~l~v~~~~V~~~v~GeHG~s~vp~~S~~-  180 (299)
T TIGR01771       106 DGIFLVATNPVDILTYVAWKLSGFPKNRVIGSG--TVLDTARLR--YLLAEKLGVDPQSVHAYIIGEHGDSEVPVWSSA-  180 (299)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhCCCHHHEEecc--chHHHHHHH--HHHHHHhCcCcCeEEEEEEecCCCceeeceeee-
Confidence            4555555555      78999999999999999  999999999  99999999999999      9999999999999 


Q ss_pred             cccccccccccCccccccc-------c------------------------------------chhhccCCceeEeE-ee
Q psy17692         72 PERTVSSRKNCIVPKELYC-------P------------------------------------EIEDREQDRRKPAI-HL  107 (211)
Q Consensus        72 i~~~il~~~v~g~pv~~~~-------~------------------------------------~~i~~d~~~i~~vs-~l  107 (211)
                              +++|+|+..+.       +                                    +++++|+++++|++ ++
T Consensus       181 --------~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ail~d~~~v~~~s~~~  252 (299)
T TIGR01771       181 --------TIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLPVSAYL  252 (299)
T ss_pred             --------EECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence                    77777765442       1                                    56788999999998 79


Q ss_pred             cCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHH
Q psy17692        108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK  154 (211)
Q Consensus       108 ~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~  154 (211)
                      +|+||+ +|+|+|+||+||++|+.+++++.|+++|++.|..|++.++
T Consensus       253 ~g~yg~-~~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik  298 (299)
T TIGR01771       253 DGEYGI-KDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLK  298 (299)
T ss_pred             cccCCC-CCEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHh
Confidence            999999 7999999999999999999999999999999999997765

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=99.97  E-value=9.6e-31  Score=232.49  Aligned_cols=135  Identities=27%  Similarity=0.401  Sum_probs=121.8

Q ss_pred             hhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccC
Q psy17692         10 SRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCI   83 (211)
Q Consensus        10 ~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g   83 (211)
                      .-.+.++|.+|||++||||+|  |.|||+||+  ++||+++++++++|      |||++|+|+||++         +++|
T Consensus       121 ~~~~~~~~~sg~p~~~viG~g--t~LDs~R~~--~~la~~~~v~~~~v~~~viGeHg~~~~~~~S~~---------~v~g  187 (308)
T cd05292         121 VLTYVAYKLSGLPPNRVIGSG--TVLDTARFR--YLLGEHLGVDPRSVHAYIIGEHGDSEVAVWSSA---------NIGG  187 (308)
T ss_pred             HHHHHHHHHHCcCHHHeeccc--chhhHHHHH--HHHHHHhCCCccceeceeeccCCCcEEecceee---------eECC
Confidence            334688999999999999999  999999999  99999999999999      9999999999999         7788


Q ss_pred             cccccccc--------------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692         84 VPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF  118 (211)
Q Consensus        84 ~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~  118 (211)
                      .|+..+..                                            +++..|+++++|++ +++|+||+ +|+|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~~ail~~~~~v~~~s~~~~g~yg~-~~~~  266 (308)
T cd05292         188 VPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIVEAILRDENSVLTVSSLLDGQYGI-KDVA  266 (308)
T ss_pred             EEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEEcccCCC-CCEE
Confidence            77754311                                            46788899999999 68999999 8999


Q ss_pred             eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+||+||++|+.+++++.|+++|++.|..|++.+++.++
T Consensus       267 ~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~~~~  306 (308)
T cd05292         267 LSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIE  306 (308)
T ss_pred             EEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999988887654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=99.96  E-value=4.6e-30  Score=228.70  Aligned_cols=141  Identities=11%  Similarity=0.027  Sum_probs=122.7

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY   70 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~   70 (211)
                      +|+.+..+|      +.+++.+|||++|+||+|  |.|||+|||  ++||+++++++++|       |||++|+|+||++
T Consensus       101 ~aivivvsNPvDv~t~~~~~~sg~~~~~vig~g--t~LDsaR~r--~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~S~a  176 (309)
T PLN00135        101 DCKVLVVANPANTNALILKEFAPSIPEKNITCL--TRLDHNRAL--GQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHA  176 (309)
T ss_pred             CeEEEEeCCcHHHHHHHHHHHcCCCCccEEEee--ehHHHHHHH--HHHHHHhCcChhhceeeEEEEcCCCceeeccccc
Confidence            445555555      569999999999999999  999999999  99999999999999       9999999999999


Q ss_pred             ccccccccccc----cCcccccccc----------------------------------------chhhc--cCCceeEe
Q psy17692         71 RPERTVSSRKN----CIVPKELYCP----------------------------------------EIEDR--EQDRRKPA  104 (211)
Q Consensus        71 ~i~~~il~~~v----~g~pv~~~~~----------------------------------------~~i~~--d~~~i~~v  104 (211)
                               ++    +|+|+.++..                                        +++.+  |+++++|+
T Consensus       177 ---------~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~v  247 (309)
T PLN00135        177 ---------TVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSM  247 (309)
T ss_pred             ---------eEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEE
Confidence                     77    7777755421                                        35566  66899999


Q ss_pred             E-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        105 I-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       105 s-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      + +++|+||+.+|+|+|+||++|+.|+..++++.|+++|+++|..|++.+++..
T Consensus       248 sv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~~lk~~~  301 (309)
T PLN00135        248 GVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEEK  301 (309)
T ss_pred             EEEecCccCCcCCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9 6899999856999999999999999999999999999999999998777654

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.96  E-value=9.5e-30  Score=227.61  Aligned_cols=140  Identities=17%  Similarity=0.267  Sum_probs=123.8

Q ss_pred             Cceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccc
Q psy17692          5 GKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRP   72 (211)
Q Consensus         5 ~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i   72 (211)
                      +..++.+|      +.+++.+|+|++||||+|  |.|||+||+  ++||+++++++++|      |||++|||+||++  
T Consensus       122 a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg--t~lds~R~~--~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~--  195 (321)
T PTZ00082        122 AFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA--GVLDSSRLR--TYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYV--  195 (321)
T ss_pred             eEEEEecCcHHHHHHHHHHhcCCChhhEEEec--CcccHHHHH--HHHHHHhCCCcccceeeEEecCCCceEecceee--
Confidence            34555555      457899999999999999  999999999  99999999999999      9999999999999  


Q ss_pred             ccccccccccCcccccccc--------------------------------------------chhhccCCceeEeE-ee
Q psy17692         73 ERTVSSRKNCIVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HL  107 (211)
Q Consensus        73 ~~~il~~~v~g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l  107 (211)
                             +++|.|+.++++                                            ++|++|+++++|++ ++
T Consensus       196 -------~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t~~~ia~a~~~i~~ail~d~~~v~~vs~~~  268 (321)
T PTZ00082        196 -------TVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLLGTGSAYFAPAAAAIEMAEAYLKDKKRVLPCSAYL  268 (321)
T ss_pred             -------EECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence                   777776654420                                            56788899999999 68


Q ss_pred             cCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       108 ~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+||+ +|||+|+|++||++|+.+++++.|+++|++.|..|++.+++.++
T Consensus       269 ~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~~~  318 (321)
T PTZ00082        269 EGQYGH-KDIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLEA  318 (321)
T ss_pred             cccCCC-CCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999 89999999999999999999999999999999999988887653

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=99.96  E-value=5.4e-30  Score=229.44  Aligned_cols=138  Identities=13%  Similarity=0.048  Sum_probs=121.5

Q ss_pred             eechhhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccccccccccc
Q psy17692          7 TVSSRKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSS   78 (211)
Q Consensus         7 ~~~~~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~   78 (211)
                      .|++--+.+||.+ |||++||||+   |.|||+|||  ++||+++|+++++|       |||++|+|+||++        
T Consensus       131 PvDv~t~v~~k~s~g~p~~rViG~---t~LDs~R~r--~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~--------  197 (323)
T TIGR01759       131 PANTNALIASKNAPDIPPKNFSAM---TRLDHNRAK--YQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHA--------  197 (323)
T ss_pred             cHHHHHHHHHHHcCCCCHHHEEEe---eHHHHHHHH--HHHHHHhCcChHHeEEeEEEecCCCceeeccccC--------
Confidence            3455567899999 9999999996   899999999  99999999999998       9999999999999        


Q ss_pred             ccccCcccccccc----------------------------------------chhhccC--CceeEeE-eecC-ccccc
Q psy17692         79 RKNCIVPKELYCP----------------------------------------EIEDREQ--DRRKPAI-HLLG-HHGIE  114 (211)
Q Consensus        79 ~~v~g~pv~~~~~----------------------------------------~~i~~d~--~~i~~vs-~l~G-~yGi~  114 (211)
                       +++|.|+.+++.                                        +++.+|+  ++++|++ +++| +||+.
T Consensus       198 -~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~  276 (323)
T TIGR01759       198 -TVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIP  276 (323)
T ss_pred             -EECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCC
Confidence             677776655321                                        4678887  8999999 7999 99985


Q ss_pred             cceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        115 EEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       115 ~dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+|+|+|+++|++|+.++++ +.|+++|+++|..|++.+++..+
T Consensus       277 ~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~lk~~~~  321 (323)
T TIGR01759       277 EGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDELLEEKE  321 (323)
T ss_pred             CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            699999999999999999999 99999999999999988876543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02602 lactate dehydrogenase

Probab=99.96  E-value=7e-30  Score=230.93  Aligned_cols=141  Identities=29%  Similarity=0.340  Sum_probs=124.7

Q ss_pred             Cceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccc
Q psy17692          5 GKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRP   72 (211)
Q Consensus         5 ~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i   72 (211)
                      |..+..+|      +.+||.+|||++||||+|  |.|||+|||  ++||+++|+++++|      |||++|||+||++  
T Consensus       148 ~ivivvtNPvdv~t~~~~k~sg~p~~rviG~g--t~LDs~R~r--~~lA~~l~v~~~~V~~~ViGeHGds~vp~wS~~--  221 (350)
T PLN02602        148 TILLIVSNPVDVLTYVAWKLSGFPANRVIGSG--TNLDSSRFR--FLIADHLDVNAQDVQAYIVGEHGDSSVALWSSV--  221 (350)
T ss_pred             eEEEEecCchHHHHHHHHHHhCCCHHHEEeec--chHHHHHHH--HHHHHHhCCCccceeeeEEecCCCceEeeeeee--
Confidence            44455555      568999999999999999  999999999  99999999999999      9999999999999  


Q ss_pred             ccccccccccCcccccccc--------------------------------------------chhhccCCceeEeE-ee
Q psy17692         73 ERTVSSRKNCIVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HL  107 (211)
Q Consensus        73 ~~~il~~~v~g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l  107 (211)
                             +++|.|+..|+.                                            +++++|+++++|++ ++
T Consensus       222 -------~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~~~v~~vsv~~  294 (350)
T PLN02602        222 -------SVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLA  294 (350)
T ss_pred             -------eECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence                   788877755311                                            46788999999999 68


Q ss_pred             cCcccc-ccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        108 LGHHGI-EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       108 ~G~yGi-~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+||+ .+|||+|+|++||++|+.+++++.|+++|++.|..|++.+++...
T Consensus       295 ~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~l~~~~~  346 (350)
T PLN02602        295 KGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQS  346 (350)
T ss_pred             ccccCCCCCCcEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999998 269999999999999999999999999999999999988887654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=99.96  E-value=1.1e-29  Score=225.08  Aligned_cols=140  Identities=24%  Similarity=0.312  Sum_probs=123.1

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR   71 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~   71 (211)
                      +++.+..+|      +.++|.+||||+||||+|  |.|||+||+  ++||+++++++++|      +||++|+|+||++ 
T Consensus       110 ~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~g--t~LDs~R~~--~~la~~l~v~~~~v~~~V~G~Hg~s~~~~~S~~-  184 (306)
T cd05291         110 DGIFLVASNPVDVITYVVQKLSGLPKNRVIGTG--TSLDTARLR--RALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV-  184 (306)
T ss_pred             CeEEEEecChHHHHHHHHHHHhCcCHHHEeecc--chHHHHHHH--HHHHHHHCCCcccceEEEEecCCCceeecceee-
Confidence            344555555      568999999999999999  999999999  99999999999999      9999999999999 


Q ss_pred             cccccccccccCcccccccc------------------------------------------chhhccCCceeEeE-eec
Q psy17692         72 PERTVSSRKNCIVPKELYCP------------------------------------------EIEDREQDRRKPAI-HLL  108 (211)
Q Consensus        72 i~~~il~~~v~g~pv~~~~~------------------------------------------~~i~~d~~~i~~vs-~l~  108 (211)
                              +++|.|+..++.                                          +++.+|+++++|++ +++
T Consensus       185 --------~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~  256 (306)
T cd05291         185 --------TVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDENAILPVSAYLD  256 (306)
T ss_pred             --------EEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHcCCCEEEEEEEEec
Confidence                    777777754321                                          45788889999999 689


Q ss_pred             CccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       109 G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      |+||+ +|+|+|+|++||++|+.+++++.|+++|++.|..|++.+++.+
T Consensus       257 g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~~~  304 (306)
T cd05291         257 GEYGE-KDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENI  304 (306)
T ss_pred             cccCC-CCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            99997 8999999999999999999999999999999999998887654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=99.96  E-value=1.1e-29  Score=235.17  Aligned_cols=149  Identities=13%  Similarity=0.068  Sum_probs=126.3

Q ss_pred             CCceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692          4 SGKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY   70 (211)
Q Consensus         4 ~~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~   70 (211)
                      +|+.+.++|+      .+||.+|+||+||||+|  |.|||+|||  ++||+++|+++++|       |||++|||+||++
T Consensus       219 ~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtg--T~LDsaR~r--~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a  294 (444)
T PLN00112        219 NVKVIVVGNPCNTNALICLKNAPNIPAKNFHAL--TRLDENRAK--CQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA  294 (444)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHcCCCCcceEEee--ccHHHHHHH--HHHHHHhCcCHHHcccceEEecCCCceeecccee
Confidence            5666666665      79999999999999999  999999999  99999999999988       9999999999999


Q ss_pred             ccccccccccccCcccccccc----------------------------------------chhh--ccCCceeEeE-ee
Q psy17692         71 RPERTVSSRKNCIVPKELYCP----------------------------------------EIED--REQDRRKPAI-HL  107 (211)
Q Consensus        71 ~i~~~il~~~v~g~pv~~~~~----------------------------------------~~i~--~d~~~i~~vs-~l  107 (211)
                               +++|+|+.++..                                        .++.  .|+++++|++ ++
T Consensus       295 ---------~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l  365 (444)
T PLN00112        295 ---------KINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYT  365 (444)
T ss_pred             ---------EECCccHHHhhccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEe
Confidence                     777877755432                                        1233  7889999999 68


Q ss_pred             cC-ccccccceEeeeceEEecceEEEEe-cCCCCHHHHHHHHhhHHhHHhhhcccceeec
Q psy17692        108 LG-HHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKEVFLSLPCVMA  165 (211)
Q Consensus       108 ~G-~yGi~~dV~~s~P~vig~~GV~~Iv-e~iLsdeE~~iL~~Sa~~l~~~~~svP~vlg  165 (211)
                      +| +||+.+|+|+|+||+||++|+.+++ ++.|+++|++.|..|++.+..-.+-+-..+|
T Consensus       366 ~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~  425 (444)
T PLN00112        366 DGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSEAELLAEKRCVAHLTG  425 (444)
T ss_pred             CCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99 5997679999999999999999999 7999999999999999776554443333444

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=99.96  E-value=2.4e-29  Score=229.77  Aligned_cols=139  Identities=12%  Similarity=0.088  Sum_probs=120.3

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY   70 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~   70 (211)
                      +++.+.++|      +++||.+|+||+||||+|  |.|||+|||  ++||+++++++++|       |||++|||+||++
T Consensus       163 ~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~g--T~LDsaR~r--~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a  238 (387)
T TIGR01757       163 NCKVLVVGNPCNTNALIAMKNAPNIPRKNFHAL--TRLDENRAK--CQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNA  238 (387)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHcCCCcccEEEec--chhHHHHHH--HHHHHHHCcChhHcceeEEEecCCCcEEecceee
Confidence            445555555      569999999999999999  999999999  99999999999988       9999999999999


Q ss_pred             ccccccccccccCcccccccc----------------------------------------chhh--ccCCceeEeE-ee
Q psy17692         71 RPERTVSSRKNCIVPKELYCP----------------------------------------EIED--REQDRRKPAI-HL  107 (211)
Q Consensus        71 ~i~~~il~~~v~g~pv~~~~~----------------------------------------~~i~--~d~~~i~~vs-~l  107 (211)
                               +++|.|+.+++.                                        .++.  .|+++++|++ ++
T Consensus       239 ---------~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~  309 (387)
T TIGR01757       239 ---------KIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYT  309 (387)
T ss_pred             ---------EECCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence                     778887765531                                        1233  6888999999 68


Q ss_pred             cCc-cccccceEeeeceEEecceEEEEe-cCCCCHHHHHHHHhhHHhHHh
Q psy17692        108 LGH-HGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE  155 (211)
Q Consensus       108 ~G~-yGi~~dV~~s~P~vig~~GV~~Iv-e~iLsdeE~~iL~~Sa~~l~~  155 (211)
                      +|+ ||+.+|+|+|+|+++|++|+.+++ ++.|+++|+++|..|++.+.+
T Consensus       310 ~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~~  359 (387)
T TIGR01757       310 DGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELLK  359 (387)
T ss_pred             CCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence            996 997579999999999999999997 999999999999999966643

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PTZ00117 malate dehydrogenase; Provisional

Probab=99.96  E-value=2.7e-29  Score=224.32  Aligned_cols=135  Identities=16%  Similarity=0.234  Sum_probs=120.7

Q ss_pred             hHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcc
Q psy17692         12 KNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVP   85 (211)
Q Consensus        12 ~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~p   85 (211)
                      -+.+++.+|||++||||+|  |.|||+||+  ++||+++|+++++|      |||++|+|+||++         +++|.|
T Consensus       129 t~~~~~~s~~p~~rviG~g--t~lds~R~~--~~la~~l~v~~~~v~~~viGeHg~~~v~~~s~~---------~v~g~p  195 (319)
T PTZ00117        129 VKVFQEKSGIPSNKICGMA--GVLDSSRFR--CNLAEKLGVSPGDVSAVVIGGHGDLMVPLPRYC---------TVNGIP  195 (319)
T ss_pred             HHHHHHhhCCCcccEEEec--chHHHHHHH--HHHHHHhCCCcccceEEEeecCCCcEEeceeec---------eECCEE
Confidence            3568999999999999999  999999999  99999999999999      9999999999999         777777


Q ss_pred             cccccc--------------------------------------------chhhccCCceeEeE-eecCccccccceEee
Q psy17692         86 KELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLS  120 (211)
Q Consensus        86 v~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s  120 (211)
                      +.++++                                            +++.+|+++++|++ +++|+||+ +|+|+|
T Consensus       196 ~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s  274 (319)
T PTZ00117        196 LSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAAIVAMIEAYLKDEKRVLVCSVYLNGQYNC-KNLFVG  274 (319)
T ss_pred             HHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCC-CCeEEE
Confidence            655421                                            45677888999999 78999999 699999


Q ss_pred             eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +|++||++|+.+++++.|+++|++.|..|++.+++..+.+
T Consensus       275 ~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~~~~~~  314 (319)
T PTZ00117        275 VPVVIGGKGIEKVIELELNAEEKELFDKSIESIQELTQKA  314 (319)
T ss_pred             EEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888766543

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=99.96  E-value=3.3e-29  Score=222.91  Aligned_cols=138  Identities=19%  Similarity=0.239  Sum_probs=122.5

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |+..-+.+||.+|||++||||+|  |.|||+||+  ++||+++++++++|      ||||+|||+||++         ++
T Consensus       124 vd~~t~~~~~~~g~~~~~viG~g--t~LDs~R~~--~~la~~l~v~~~~v~~~viGeHg~s~~~~~S~~---------~i  190 (309)
T cd05294         124 VDVMTYKALKESGFDKNRVFGLG--THLDSLRFK--VAIAKHFNVHISEVHTRIIGEHGDSMVPLISST---------SI  190 (309)
T ss_pred             hHHHHHHHHHhcCCCHHHEeecc--chHHHHHHH--HHHHHHHCcChHHeEEEEEecCCCceEeeeeec---------EE
Confidence            44455679999999999999999  999999999  99999999999999      9999999999999         77


Q ss_pred             cCcccccccc---------------------------------------chhhccCCceeEeE-eecCcc-ccccceEee
Q psy17692         82 CIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHH-GIEEEVFLS  120 (211)
Q Consensus        82 ~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~s  120 (211)
                      +|+|+.++..                                       +++..|++.++|++ +.+|+| |+ +|+++|
T Consensus       191 ~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~~a~~~~~ii~ail~~~~~v~~vsv~~~g~~~~~-~~~~~s  269 (309)
T cd05294         191 GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAISNLVRTIANDERRILTVSTYLEGEIDGI-RDVCIG  269 (309)
T ss_pred             CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHCCCCeEEEEEEEECCccCCC-CCeEEE
Confidence            8877755421                                       45778889999999 588987 99 699999


Q ss_pred             eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcc
Q psy17692        121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLS  159 (211)
Q Consensus       121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~s  159 (211)
                      +||+||++|+..++++.|+++|++.|..|++.+++..+.
T Consensus       270 vP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~~~~~  308 (309)
T cd05294         270 VPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTRE  308 (309)
T ss_pred             eEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999888876543

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=99.95  E-value=8e-29  Score=219.46  Aligned_cols=140  Identities=28%  Similarity=0.365  Sum_probs=124.2

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR   71 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~   71 (211)
                      +|+.++.+|      +.+||.+|||++||||+|  |.|||+||+  ++||+++++++++|      |||++|+|+||++ 
T Consensus       108 ~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~g--t~lDs~r~~--~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~-  182 (300)
T cd00300         108 DAIILVVSNPVDILTYVAQKLSGLPKNRVIGSG--TLLDSARFR--SLLAEKLDVDPQSVHAYVLGEHGDSQVVAWSTA-  182 (300)
T ss_pred             CeEEEEccChHHHHHHHHHHHhCcCHHHEEecC--CcHHHHHHH--HHHHHHhCCCcccEEEEEEeccCCceeeeeeee-
Confidence            455555555      468999999999999999  999999999  99999999999999      9999999999999 


Q ss_pred             cccccccccccCcccccccc---------------------------------------chhhccCCceeEeE-eecCcc
Q psy17692         72 PERTVSSRKNCIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHH  111 (211)
Q Consensus        72 i~~~il~~~v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~y  111 (211)
                              +++|.|+.+++.                                       +++.+|+++++|++ +++|+|
T Consensus       183 --------~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~g~y  254 (300)
T cd00300         183 --------TVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKSILLDERRVLPVSAVQEGQY  254 (300)
T ss_pred             --------EECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHcCCCeEEEEEEEecCcc
Confidence                    788888765431                                       45777889999999 689999


Q ss_pred             ccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        112 GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       112 Gi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      |. +|+|+|+|+++|++|+.+++++.|+++|++.|..|++.+++.+
T Consensus       255 g~-~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         255 GI-EDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             CC-CCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence            97 8999999999999999999999999999999999998877653

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=99.95  E-value=6.3e-29  Score=221.72  Aligned_cols=132  Identities=16%  Similarity=0.193  Sum_probs=112.2

Q ss_pred             hhhHHH-HHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccc
Q psy17692         10 SRKNCI-VRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus        10 ~~~~~~-~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      .-.+++ ++.+|||++ +||+|  |.|||+|||  ++||++++++|++|       |||++|||+||++         ++
T Consensus       115 v~t~v~~~~~sg~p~~-vig~g--t~LDsaR~r--~~la~~l~v~~~~V~~~~V~GeHG~s~vp~~S~~---------~V  180 (313)
T TIGR01756       115 TNCLVAMLHAPKLSAE-NFSSL--CMLDHNRAV--SRIASKLKVPVDHIYHVVVWGNHAESMVADLTHA---------EF  180 (313)
T ss_pred             HHHHHHHHHcCCCCHH-HEEec--ccHHHHHHH--HHHHHHhCcChhheeeeEEEECCCCceeeccccc---------EE
Confidence            334567 599999999 99999  999999999  99999999999999       9999999999999         55


Q ss_pred             --cCcccccc--------------------------------cc---------chhhc--cCCceeEeE-eec-C-cccc
Q psy17692         82 --CIVPKELY--------------------------------CP---------EIEDR--EQDRRKPAI-HLL-G-HHGI  113 (211)
Q Consensus        82 --~g~pv~~~--------------------------------~~---------~~i~~--d~~~i~~vs-~l~-G-~yGi  113 (211)
                        +|.|+..+                                .+         +++.+  ++++++|++ +++ | +||+
T Consensus       181 ~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvsv~l~~~g~YGi  260 (313)
T TIGR01756       181 TKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMGIPVPEGNPYGI  260 (313)
T ss_pred             ecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEecCCCccCC
Confidence              66553221                                10         45677  556999999 475 3 9999


Q ss_pred             ccceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHh
Q psy17692        114 EEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE  155 (211)
Q Consensus       114 ~~dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~  155 (211)
                      .+|+|+|+||+||++|+.++++ +.|+++|+++|..|++.++.
T Consensus       261 ~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~  303 (313)
T TIGR01756       261 KPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFE  303 (313)
T ss_pred             CCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            5599999999999999999999 99999999999999966643

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=99.95  E-value=6.3e-29  Score=221.58  Aligned_cols=136  Identities=33%  Similarity=0.462  Sum_probs=121.8

Q ss_pred             chhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccccc
Q psy17692          9 SSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus         9 ~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      +..-+.+||.+|||++||||+|  |.||++||+  ++||+++++++++|      |||++|||+||++         +++
T Consensus       124 d~~t~~~~k~sg~p~~~viG~g--t~Ld~~R~~--~~la~~l~v~~~~v~~~v~GeHG~s~vp~~S~~---------~i~  190 (312)
T cd05293         124 DIMTYVAWKLSGLPKHRVIGSG--CNLDSARFR--YLIAERLGVAPSSVHGWIIGEHGDSSVPVWSGV---------NVA  190 (312)
T ss_pred             HHHHHHHHHHhCCCHHHEEecC--chHHHHHHH--HHHHHHhCCChhhEEEEEeecCCCCccccceec---------eEC
Confidence            3444678999999999999999  999999999  99999999999999      9999999999999         778


Q ss_pred             Ccccccccc--------------------------------------------chhhccCCceeEeE-eecCccccccce
Q psy17692         83 IVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEV  117 (211)
Q Consensus        83 g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV  117 (211)
                      |.|+.+|+.                                            +++.+|+++++|++ +++|+||+.+|+
T Consensus       191 g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ii~ail~d~~~~~~vsv~~~g~yg~~~d~  270 (312)
T cd05293         191 GVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEV  270 (312)
T ss_pred             CEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHcCCCeEEEEEEEeCCccCCCCCe
Confidence            887655530                                            45777888999999 689999996799


Q ss_pred             EeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        118 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       118 ~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      ++|+||+||++|+.+++++.|+++|++.|..|++.+++..
T Consensus       271 ~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~~~  310 (312)
T cd05293         271 FLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQ  310 (312)
T ss_pred             EEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998887654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=99.95  E-value=6.8e-29  Score=221.53  Aligned_cols=141  Identities=25%  Similarity=0.351  Sum_probs=124.1

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR   71 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~   71 (211)
                      +|+.++.+|      +.++|.+|||++||||+|  |.|||+||+  ++||+++|+++++|      |||++|+|+||++ 
T Consensus       115 ~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~g--t~LDs~R~~--~~la~~l~v~~~~V~~~viGeHG~s~v~~~S~~-  189 (315)
T PRK00066        115 DGIFLVASNPVDILTYATWKLSGFPKERVIGSG--TSLDSARFR--YMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSHA-  189 (315)
T ss_pred             CeEEEEccCcHHHHHHHHHHHhCCCHHHEeecC--chHHHHHHH--HHHHHHhCCCcccEEEEEEecCCCcceecceec-
Confidence            345555555      568999999999999999  999999999  99999999999999      9999999999999 


Q ss_pred             cccccccccccCcccccccc-------------------------------------------chhhccCCceeEeE-ee
Q psy17692         72 PERTVSSRKNCIVPKELYCP-------------------------------------------EIEDREQDRRKPAI-HL  107 (211)
Q Consensus        72 i~~~il~~~v~g~pv~~~~~-------------------------------------------~~i~~d~~~i~~vs-~l  107 (211)
                              +++|.|+.+++.                                           +++.+|++.++|++ +.
T Consensus       190 --------~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~~~~i~~ail~~~~~v~~~sv~~  261 (315)
T PRK00066        190 --------NVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALARITKAILNNENAVLPVSAYL  261 (315)
T ss_pred             --------eECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence                    777777654420                                           45777889999999 68


Q ss_pred             cCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       108 ~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+||+ +|+|+|+||++|++|+.+++++.|+++|++.|..|++.+++.++
T Consensus       262 ~g~yg~-~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~~~~  311 (315)
T PRK00066        262 EGQYGE-EDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMD  311 (315)
T ss_pred             ccccCC-CCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999997 89999999999999999999999999999999999988877655

>cd00704 MDH Malate dehydrogenase

Probab=99.95  E-value=6.8e-29  Score=222.34  Aligned_cols=135  Identities=12%  Similarity=0.038  Sum_probs=118.0

Q ss_pred             chhhHHHHHHhC-CCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccccccccccccc
Q psy17692          9 SSRKNCIVRKEL-YRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         9 ~~~~~~~~k~sg-~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      ++-.+.+||.+| ||++||||+   |.|||+|||  ++||++++++|++|       |||++|+|+||++         +
T Consensus       130 D~~t~~~~k~sg~~p~~~vig~---t~LDs~R~r--~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~---------~  195 (323)
T cd00704         130 NTNALIALKNAPNLPPKNFTAL---TRLDHNRAK--AQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNA---------V  195 (323)
T ss_pred             HHHHHHHHHHcCCCCHHHEEEe---eHHHHHHHH--HHHHHHhCcCHHHceeeeEEecccCceeeccccc---------e
Confidence            333467999999 599999977   899999999  99999999999988       9999999999999         7


Q ss_pred             ccCcccccccc-------------------------------------------chhhccCC--ceeEeE-eecCcc-cc
Q psy17692         81 NCIVPKELYCP-------------------------------------------EIEDREQD--RRKPAI-HLLGHH-GI  113 (211)
Q Consensus        81 v~g~pv~~~~~-------------------------------------------~~i~~d~~--~i~~vs-~l~G~y-Gi  113 (211)
                      ++|.|+..+++                                           +++.+|++  +++|++ +++|+| |+
T Consensus       196 v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi  275 (323)
T cd00704         196 VYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGI  275 (323)
T ss_pred             ecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCC
Confidence            77776644421                                           46788888  999998 799999 99


Q ss_pred             ccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       114 ~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      .+|+|+|+|++||++|+..++++.|+++|+++|..|++.+++..
T Consensus       276 ~~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~  319 (323)
T cd00704         276 PPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEELIEEK  319 (323)
T ss_pred             CCceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999999999997776543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=99.95  E-value=8.3e-29  Score=221.86  Aligned_cols=142  Identities=11%  Similarity=0.001  Sum_probs=120.9

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY   70 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~   70 (211)
                      +|+.+..+|      +++||.+|++|+||||+|  |.|||+|||  ++||+++++++++|       |||++|+|+||++
T Consensus       118 ~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~g--t~LDs~R~r--~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~  193 (324)
T TIGR01758       118 DCKVLVVGNPANTNALVLSNYAPSIPPKNFSAL--TRLDHNRAL--AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHA  193 (324)
T ss_pred             CeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEe--eehHHHHHH--HHHHHHhCCChhhceEeEEEECCCCCcccccccc
Confidence            455666666      459999999999999999  999999999  99999999999988       9999999999999


Q ss_pred             cccccccccccc-C---cccccccc----------------------------------------chhh--ccCCceeEe
Q psy17692         71 RPERTVSSRKNC-I---VPKELYCP----------------------------------------EIED--REQDRRKPA  104 (211)
Q Consensus        71 ~i~~~il~~~v~-g---~pv~~~~~----------------------------------------~~i~--~d~~~i~~v  104 (211)
                               +++ |   .|+.+++.                                        +++.  .|+++++|+
T Consensus       194 ---------~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ia~~~~~i~~ai~~~~~~~~i~~v  264 (324)
T TIGR01758       194 ---------TVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALSAAKAAVDQMHDWVLGTPEGTFVSM  264 (324)
T ss_pred             ---------eecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence                     666 7   66644321                                        2345  678899999


Q ss_pred             E-eecCc-cccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        105 I-HLLGH-HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       105 s-~l~G~-yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      | +++|+ ||+.+|+|+|+|+++|+.|+..+.++.|+++|+++|..|++.+++..+
T Consensus       265 s~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~lk~~~~  320 (324)
T TIGR01758       265 GVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKELEEERD  320 (324)
T ss_pred             EeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9 68999 999569999999999977777777899999999999999988876553

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK05442 malate dehydrogenase; Provisional

Probab=99.95  E-value=5.2e-29  Score=223.35  Aligned_cols=136  Identities=11%  Similarity=0.020  Sum_probs=119.4

Q ss_pred             echhhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692          8 VSSRKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR   79 (211)
Q Consensus         8 ~~~~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~   79 (211)
                      |++-.+++||.+ |||++||||+   |.|||+|||  ++||+++++++++|       |||++|+|+||++         
T Consensus       133 vDv~t~v~~k~s~g~p~~rViG~---t~LDs~R~r--~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~---------  198 (326)
T PRK05442        133 ANTNALIAMKNAPDLPAENFTAM---TRLDHNRAL--SQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHA---------  198 (326)
T ss_pred             hHHHHHHHHHHcCCCCHHHEEee---eHHHHHHHH--HHHHHHhCcChHHeEEeEEEECCcCceeeccccC---------
Confidence            445556799999 9999999999   899999999  99999999999988       9999999999999         


Q ss_pred             cccCcccccccc----------------------------------------chhhcc--CCceeEeE-eecCccccccc
Q psy17692         80 KNCIVPKELYCP----------------------------------------EIEDRE--QDRRKPAI-HLLGHHGIEEE  116 (211)
Q Consensus        80 ~v~g~pv~~~~~----------------------------------------~~i~~d--~~~i~~vs-~l~G~yGi~~d  116 (211)
                      +++|.|+.+++.                                        +++.+|  +++++|++ +++|+||+.+|
T Consensus       199 ~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~  278 (326)
T PRK05442        199 TIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEG  278 (326)
T ss_pred             EECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCC
Confidence            777777755431                                        356778  78999999 58999999669


Q ss_pred             eEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        117 VFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+|+|+++| +|+.+++. +.|+++|+++|..|++.+++..+
T Consensus       279 v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~~~~  320 (326)
T PRK05442        279 LIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAELEEERD  320 (326)
T ss_pred             eEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 99999965 99999999999999987776654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.95  E-value=2.2e-28  Score=215.99  Aligned_cols=133  Identities=22%  Similarity=0.343  Sum_probs=119.8

Q ss_pred             hhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCc
Q psy17692         11 RKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIV   84 (211)
Q Consensus        11 ~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~   84 (211)
                      --+.+++.+||||+||||+|  |.|||+||+  ++||+++++++++|      |||++|+|+||.+         +++|.
T Consensus       121 ~t~~~~~~s~~~~~rviGlg--t~lds~r~~--~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~---------~v~g~  187 (300)
T cd01339         121 MTYVAYKASGFPRNRVIGMA--GVLDSARFR--YFIAEELGVSVKDVQAMVLGGHGDTMVPLPRYS---------TVGGI  187 (300)
T ss_pred             HHHHHHHHhCCCHHHEEEec--chHHHHHHH--HHHHHHhCCCccceEEEEEeCCCCcceecceec---------EECCE
Confidence            33567999999999999999  999999999  99999999999999      9999999999999         77777


Q ss_pred             ccccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEeeeceE
Q psy17692         85 PKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCV  124 (211)
Q Consensus        85 pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~v  124 (211)
                      |+.++..                                       ++++.|++.++|++ +++|+||+ +|+|+|+|++
T Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i~~ail~~~~~i~~~s~~~~g~yg~-~~~~~s~P~~  266 (300)
T cd01339         188 PLTELITKEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPCSAYLEGEYGI-KDIFVGVPVV  266 (300)
T ss_pred             EHHHhcChHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccCC-CCeEEEEEEE
Confidence            7655431                                       45777889999999 68999999 6999999999


Q ss_pred             EecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        125 MADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       125 ig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      ||++|+.+++++.|+++|++.|..|++.+++.+
T Consensus       267 ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         267 LGKNGVEKIIELDLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             EeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=99.95  E-value=4.5e-28  Score=217.14  Aligned_cols=140  Identities=10%  Similarity=-0.003  Sum_probs=119.4

Q ss_pred             CCceechhh------HHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccc
Q psy17692          4 SGKTVSSRK------NCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKEL   69 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~   69 (211)
                      ++..+.++|      +++||.+ ++|++| ||+|  |.|||+|||  ++||+++++++++|       |||++|+|+||+
T Consensus       121 ~~iiivvsNPvD~~t~~~~k~~~~~~~~~-ig~g--t~LDs~R~r--~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~  195 (325)
T cd01336         121 NVKVLVVGNPANTNALILLKYAPSIPKEN-FTAL--TRLDHNRAK--SQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNH  195 (325)
T ss_pred             CeEEEEecCcHHHHHHHHHHHcCCCCHHH-EEee--ehHHHHHHH--HHHHHHhCcChhhceEeEEEEcCCCCeeecccc
Confidence            344544555      5699996 777777 9999  999999999  99999999999998       999999999999


Q ss_pred             ccccccccccccc----Ccccccccc----------------------------------------chhhccC--CceeE
Q psy17692         70 YRPERTVSSRKNC----IVPKELYCP----------------------------------------EIEDREQ--DRRKP  103 (211)
Q Consensus        70 ~~i~~~il~~~v~----g~pv~~~~~----------------------------------------~~i~~d~--~~i~~  103 (211)
                      +         +++    |.|+.+++.                                        +++.+|+  ++++|
T Consensus       196 ~---------~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~  266 (325)
T cd01336         196 A---------TVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSSAMSAAKAICDHVHDWWFGTPEGEFVS  266 (325)
T ss_pred             c---------eeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccchHHHHHHHHHHHHHHHHcCCCCCeEEE
Confidence            9         666    777644321                                        4567774  79999


Q ss_pred             eE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        104 AI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       104 vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      ++ +++|+||+.+|+|+|+|++||++|+.+++++.|+++|++.|..|++.+++..
T Consensus       267 vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~l~~e~  321 (325)
T cd01336         267 MGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDATAKELVEEK  321 (325)
T ss_pred             EEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99 6899999966999999999999999999999999999999999998777654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=99.95  E-value=5.8e-28  Score=215.47  Aligned_cols=148  Identities=12%  Similarity=0.082  Sum_probs=119.1

Q ss_pred             CCceechhhHH----------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeee
Q psy17692          4 SGKTVSSRKNC----------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVR   66 (211)
Q Consensus         4 ~~~~~~~~~~~----------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~   66 (211)
                      +++.+.++|++          +||.+|||++||||+|  | |||+|||  ++||+++++++++|      |||+ +|||+
T Consensus       109 ~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g--~-LDsaR~r--~~la~~l~v~~~~v~~~ViGeHg~~s~vp~  183 (312)
T TIGR01772       109 KAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT--T-LDIVRAN--TFVAELKGKDPMEVNVPVIGGHSGETIIPL  183 (312)
T ss_pred             CeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee--c-chHHHHH--HHHHHHhCCCHHHeEEEEEEecCCCccccc
Confidence            45666666665          7899999999999998  7 9999999  99999999999999      9987 99999


Q ss_pred             ccccccccccccc----------cccC---------cccccccc--------chhh---ccCCceeEeEeecCccccccc
Q psy17692         67 KELYRPERTVSSR----------KNCI---------VPKELYCP--------EIED---REQDRRKPAIHLLGHHGIEEE  116 (211)
Q Consensus        67 ~S~~~i~~~il~~----------~v~g---------~pv~~~~~--------~~i~---~d~~~i~~vs~l~G~yGi~~d  116 (211)
                      ||++.+... +.+          ...|         .--..|.+        ++|.   +|+++++|+++++|+||+ +|
T Consensus       184 ~S~~~~~~~-~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~yg~-~~  261 (312)
T TIGR01772       184 ISQCPGKVL-FTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVT-EA  261 (312)
T ss_pred             cccccccCC-CCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccCCCc-Cc
Confidence            999954211 110          0011         11112222        5666   578899998899999998 79


Q ss_pred             eEeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692        117 VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+|+||+||++|+.+++++ .|+++|++.|..|++.+++.+.
T Consensus       262 v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  304 (312)
T TIGR01772       262 TFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIK  304 (312)
T ss_pred             eEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 9999999999999988876543

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.95  E-value=1.7e-27  Score=210.33  Aligned_cols=135  Identities=21%  Similarity=0.327  Sum_probs=119.7

Q ss_pred             hhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccC
Q psy17692         10 SRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCI   83 (211)
Q Consensus        10 ~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g   83 (211)
                      .--+.+++.+||||+||||+|  |.|||+||+  ++||+++++++++|      |||++++|+||++         +++|
T Consensus       124 ~~~~~~~~~s~~~~~~viG~g--t~lds~r~~--~~la~~l~v~~~~v~~~viGehg~s~~p~~S~~---------~v~g  190 (307)
T PRK06223        124 AMTYVALKESGFPKNRVIGMA--GVLDSARFR--TFIAEELNVSVKDVTAFVLGGHGDSMVPLVRYS---------TVGG  190 (307)
T ss_pred             HHHHHHHHHhCCCcccEEEeC--CCcHHHHHH--HHHHHHhCcChhhCcccEEcCCCCcceEchhhC---------EECC
Confidence            334578999999999999999  999999999  99999999999999      9999999999999         6666


Q ss_pred             cccccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEeeece
Q psy17692         84 VPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPC  123 (211)
Q Consensus        84 ~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~  123 (211)
                      .|+.++..                                       +++..|++.++|++ +.+|+||+ +|+++|+||
T Consensus       191 ~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~~kg~t~~~~A~~~~~ii~ail~~~~~~~~~~v~~~g~yg~-~~~~~s~P~  269 (307)
T PRK06223        191 IPLEDLLSKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASIAEMVEAILKDKKRVLPCSAYLEGEYGV-KDVYVGVPV  269 (307)
T ss_pred             EEHHHhCChHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHcCCCcEEEEEEEecCcCCC-CCeEEEeEE
Confidence            66643321                                       35667888999999 68999999 899999999


Q ss_pred             EEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        124 VMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       124 vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +||++|+..++++.|+++|++.|..|++.+++.++
T Consensus       270 ~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~  304 (307)
T PRK06223        270 KLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLIE  304 (307)
T ss_pred             EEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988887654

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.94  E-value=5.1e-27  Score=210.14  Aligned_cols=137  Identities=13%  Similarity=0.089  Sum_probs=111.1

Q ss_pred             HHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeeecccccc--cc----ccccc---
Q psy17692         16 VRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVRKELYRP--ER----TVSSR---   79 (211)
Q Consensus        16 ~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~~S~~~i--~~----~il~~---   79 (211)
                      ++.+||||+||||+|  + |||+|||  ++||+++|++|++|      |||| +|||+||++-+  ..    .+..+   
T Consensus       140 ~~~sg~p~~~viG~g--~-LDs~R~r--~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~~l~~~~~~~i~~~v~~  214 (321)
T PTZ00325        140 KKAGVYDPRKLFGVT--T-LDVVRAR--KFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGLSLPEEQVEQITHRVQV  214 (321)
T ss_pred             hhccCCChhheeech--h-HHHHHHH--HHHHHHhCcChhheEEEEEeecCCcccccchhccCCCCCHHHHHHHHHHHHH
Confidence            599999999999998  7 9999999  99999999999999      9999 89999998811  00    00000   


Q ss_pred             ----ccc---Ccccccccc--------chhhcc---CCceeEeEeecCccccccceEeeeceEEecceEEEEec-CCCCH
Q psy17692         80 ----KNC---IVPKELYCP--------EIEDRE---QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVN-QPLTQ  140 (211)
Q Consensus        80 ----~v~---g~pv~~~~~--------~~i~~d---~~~i~~vs~l~G~yGi~~dV~~s~P~vig~~GV~~Ive-~iLsd  140 (211)
                          -+.   |.--+.|.+        +++.+|   +++++|+++++|+||+ +|+|+|+||+||++|+.++++ +.|++
T Consensus       215 ~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~  293 (321)
T PTZ00325        215 GGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNA  293 (321)
T ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCH
Confidence                000   111222332        677755   8899999999999998 799999999999999999999 99999


Q ss_pred             HHHHHHHhhHHhHHhhhc
Q psy17692        141 EEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       141 eE~~iL~~Sa~~l~~~~~  158 (211)
                      +|++.|..|++.+++.++
T Consensus       294 ~E~~~l~~S~~~i~~~~~  311 (321)
T PTZ00325        294 YEEELLEAAVPDLKKNIE  311 (321)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999988876543

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=99.93  E-value=1.7e-26  Score=206.74  Aligned_cols=137  Identities=10%  Similarity=0.016  Sum_probs=117.9

Q ss_pred             echhhHHHHHHhC-CCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692          8 VSSRKNCIVRKEL-YRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR   79 (211)
Q Consensus         8 ~~~~~~~~~k~sg-~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~   79 (211)
                      |++-.+++||.+| |||+||||+   |.|||+||+  +++|+++|+++++|       +||++|+|+||++         
T Consensus       131 vD~~t~~~~k~sg~~p~~~ViG~---t~LDs~Rl~--~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~---------  196 (322)
T cd01338         131 CNTNALIAMKNAPDIPPDNFTAM---TRLDHNRAK--SQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNA---------  196 (322)
T ss_pred             HHHHHHHHHHHcCCCChHheEEe---hHHHHHHHH--HHHHHHhCcChhHeEEEEEEeCCcccEEEehhhc---------
Confidence            3444567999995 999999999   799999999  99999999999988       9999999999999         


Q ss_pred             cccCcccccccc----------------------------------------chhhccC--CceeEeE-eecCccccccc
Q psy17692         80 KNCIVPKELYCP----------------------------------------EIEDREQ--DRRKPAI-HLLGHHGIEEE  116 (211)
Q Consensus        80 ~v~g~pv~~~~~----------------------------------------~~i~~d~--~~i~~vs-~l~G~yGi~~d  116 (211)
                      +++|.|+.++..                                        +++.+|+  ++++|++ +++|+||+.+|
T Consensus       197 ~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~  276 (322)
T cd01338         197 TIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEG  276 (322)
T ss_pred             EECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCC
Confidence            666666542211                                        4577788  5999999 68999999669


Q ss_pred             eEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        117 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+|+|++||++|+.+++++.|+++|++.|..|++.+++..+
T Consensus       277 v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~l~~~~~  318 (322)
T cd01338         277 LIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELLEERE  318 (322)
T ss_pred             eEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999977766543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=99.93  E-value=3.4e-26  Score=212.20  Aligned_cols=134  Identities=10%  Similarity=0.080  Sum_probs=116.2

Q ss_pred             echhhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692          8 VSSRKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR   79 (211)
Q Consensus         8 ~~~~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~   79 (211)
                      |+.--+.++|.+ |||++||||||  | |||+||+  ++||+++|+++++|       |||++|||+||++         
T Consensus       253 vD~~t~i~~k~apgiP~~rVig~g--t-lds~R~r--~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a---------  318 (452)
T cd05295         253 LNLKTSILIKYAPSIPRKNIIAVA--R-LQENRAK--ALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKA---------  318 (452)
T ss_pred             HHHHHHHHHHHcCCCCHHHEEEec--c-hHHHHHH--HHHHHHhCcCHHHceeeEEEEccCCceeeeeeEE---------
Confidence            344456789999 99999999998  7 7799999  99999999999999       9999999999999         


Q ss_pred             cccC------------cccccccc------------------------------------chhhccC--CceeEeE-eec
Q psy17692         80 KNCI------------VPKELYCP------------------------------------EIEDREQ--DRRKPAI-HLL  108 (211)
Q Consensus        80 ~v~g------------~pv~~~~~------------------------------------~~i~~d~--~~i~~vs-~l~  108 (211)
                      +++|            .|+.+++.                                    +++..|+  ++++|++ +++
T Consensus       319 ~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sd  398 (452)
T cd05295         319 RVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSSSLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISE  398 (452)
T ss_pred             EEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeec
Confidence            5544            66644431                                    4567776  5899999 689


Q ss_pred             CccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHh
Q psy17692        109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE  155 (211)
Q Consensus       109 G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~  155 (211)
                      |+||+.+|+++|+||++|+.|+..++++.|+++|+++|..|++++.+
T Consensus       399 G~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~~kL~~S~~eL~~  445 (452)
T cd05295         399 GWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILREVLKRITSDLIQ  445 (452)
T ss_pred             cccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            99999779999999999999999999999999999999999976654

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=99.93  E-value=4.3e-26  Score=203.27  Aligned_cols=148  Identities=13%  Similarity=0.079  Sum_probs=117.5

Q ss_pred             CCceechhhHH----------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cC-CCceeee
Q psy17692          4 SGKTVSSRKNC----------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SS-GKSCIVR   66 (211)
Q Consensus         4 ~~~~~~~~~~~----------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eH-Gds~vp~   66 (211)
                      +++.++.+|++          +||.+|||++||||+|  + |||+|||  ++||+++|+++++|      || ||+|||+
T Consensus       110 ~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~--~-LDs~R~~--~~la~~l~v~~~~V~~~v~GeHsGds~vp~  184 (310)
T cd01337         110 KALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVT--T-LDVVRAN--TFVAELLGLDPAKVNVPVIGGHSGVTILPL  184 (310)
T ss_pred             CeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeee--c-hHHHHHH--HHHHHHhCcCHHHEEEEEEecCCCCceecc
Confidence            46667777776          4889999999999997  6 9999999  99999999999999      99 9999999


Q ss_pred             cccccccccccc-------c--cccC---------cccccccc--------chhhcc---CCceeEeEeecCccccccce
Q psy17692         67 KELYRPERTVSS-------R--KNCI---------VPKELYCP--------EIEDRE---QDRRKPAIHLLGHHGIEEEV  117 (211)
Q Consensus        67 ~S~~~i~~~il~-------~--~v~g---------~pv~~~~~--------~~i~~d---~~~i~~vs~l~G~yGi~~dV  117 (211)
                      ||++.+...+..       .  ..+|         .--+.|.+        ++|.+|   ++.+++++++.|+ |+ +|+
T Consensus       185 ~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s~~~~~-g~-~~v  262 (310)
T cd01337         185 LSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESD-VT-EAP  262 (310)
T ss_pred             cccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEEEEecc-CC-Cce
Confidence            999965321110       0  0011         11222333        678855   5678888888877 87 799


Q ss_pred             EeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692        118 FLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       118 ~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+|+||+||++|+.+++++ .|+++|++.|..|++.+++.+.
T Consensus       263 ~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~  304 (310)
T cd01337         263 FFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIE  304 (310)
T ss_pred             EEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999 6999999999999988876543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.93  E-value=2.1e-26  Score=188.93  Aligned_cols=115  Identities=31%  Similarity=0.405  Sum_probs=102.0

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |.|||+|||  ++||+++|++|++|      |||++|||+||++         +++|+|+.+++.               
T Consensus         1 T~LDs~R~~--~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~---------~v~g~pl~~~~~~~~~~~~~~~~~l~~   69 (174)
T PF02866_consen    1 TMLDSARFR--YFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHA---------KVGGVPLLSYAKPSGKLSEEELEELTE   69 (174)
T ss_dssp             THHHHHHHH--HHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGE---------EETTEEHHHHHHTTTSSSHHHHHHHHH
T ss_pred             CccHHHHHH--HHHHHHHCcCccceEEEEEecCCcceeeeeecc---------cccccccccccccccchhHHhhhcccc
Confidence            789999999  99999999999999      9999999999999         888888844322               


Q ss_pred             -----------------------------chhhccCCceeEeE-eecCccccccc-eEeeeceEEecceEEEEec-CCCC
Q psy17692         92 -----------------------------EIEDREQDRRKPAI-HLLGHHGIEEE-VFLSLPCVMADNGVTHIVN-QPLT  139 (211)
Q Consensus        92 -----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~d-V~~s~P~vig~~GV~~Ive-~iLs  139 (211)
                                                   ++|.+|+++++|++ +++|+||+..+ +|+|+|++||++|+.++++ +.|+
T Consensus        70 ~v~~~g~~ii~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~  149 (174)
T PF02866_consen   70 RVRKAGYEIIKAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLS  149 (174)
T ss_dssp             HHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSST
T ss_pred             ccEeccceeeeeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCC
Confidence                                         45777888999999 68999999433 9999999999999999999 9999


Q ss_pred             HHHHHHHHhhHHhHHhhhc
Q psy17692        140 QEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       140 deE~~iL~~Sa~~l~~~~~  158 (211)
                      ++|++.|..|++.+++.++
T Consensus       150 ~~E~~~l~~sa~~l~~~i~  168 (174)
T PF02866_consen  150 EEEQEKLKESAKELKKEIE  168 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999988776654

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PRK05086 malate dehydrogenase; Provisional

Probab=99.92  E-value=3.4e-25  Score=197.52  Aligned_cols=145  Identities=12%  Similarity=0.068  Sum_probs=112.4

Q ss_pred             CceechhhHH------HH----HHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeeec
Q psy17692          5 GKTVSSRKNC------IV----RKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVRK   67 (211)
Q Consensus         5 ~~~~~~~~~~------~~----k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~~   67 (211)
                      +..+.++|++      ++    |.+|||++||||+|  + |||+||+  ++||+++|+++++|      |||+ +|||+|
T Consensus       112 ~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~--~-Lds~R~~--~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~  186 (312)
T PRK05086        112 ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT--T-LDVIRSE--TFVAELKGKQPGEVEVPVIGGHSGVTILPLL  186 (312)
T ss_pred             eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeee--c-HHHHHHH--HHHHHHhCCChhheEEEEEEecCCCceeccc
Confidence            3456666665      33    99999999999998  6 9999999  99999999999999      9977 999999


Q ss_pred             ccccccccc-------ccccc--cC---------cccccccc--------chhhc---cCCceeEeEeecCccccccceE
Q psy17692         68 ELYRPERTV-------SSRKN--CI---------VPKELYCP--------EIEDR---EQDRRKPAIHLLGHHGIEEEVF  118 (211)
Q Consensus        68 S~~~i~~~i-------l~~~v--~g---------~pv~~~~~--------~~i~~---d~~~i~~vs~l~G~yGi~~dV~  118 (211)
                      |++ -...+       +.+++  .|         .-.+.|.+        +++.+   |+++++|+++++|+ |+ .|+|
T Consensus       187 S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~~~~~~-g~-~~v~  263 (312)
T PRK05086        187 SQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGD-GK-YARF  263 (312)
T ss_pred             ccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEEEEecc-CC-cceE
Confidence            988 11000       00000  00         01122222        56774   47789998888887 87 7999


Q ss_pred             eeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhh
Q psy17692        119 LSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      +|+|++||++|+.+++++ .|+++|++.|..|++.+++.+
T Consensus       264 ~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~  303 (312)
T PRK05086        264 FAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDI  303 (312)
T ss_pred             EEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 999999999999998777654

>PLN00106 malate dehydrogenase

Probab=99.91  E-value=7.8e-27  Score=209.07  Aligned_cols=151  Identities=16%  Similarity=0.215  Sum_probs=114.3

Q ss_pred             HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCC-ceeeeccccccccccccccccCcc
Q psy17692         13 NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGK-SCIVRKELYRPERTVSSRKNCIVP   85 (211)
Q Consensus        13 ~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGd-s~vp~~S~~~i~~~il~~~v~g~p   85 (211)
                      +.+++.+||||+||||+|  + |||+||+  +++|+++|+++.+|      |||+ +|||+||++.+             
T Consensus       147 ~~~~~~s~~p~~~viG~~--~-LDs~Rl~--~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~-------------  208 (323)
T PLN00106        147 EVLKKAGVYDPKKLFGVT--T-LDVVRAN--TFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATP-------------  208 (323)
T ss_pred             HHHHHcCCCCcceEEEEe--c-chHHHHH--HHHHHHhCCChhheEEEEEEeCCCccEeeehhccee-------------
Confidence            345799999999999997  6 9999999  99999999999999      9955 99999999932             


Q ss_pred             cccccc---chhhcc-CCceeEeEee---cC--ccccccceEeeeceEEecceEEEEecCCCCH--HHHHHHHhhH-HhH
Q psy17692         86 KELYCP---EIEDRE-QDRRKPAIHL---LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ--EEIEKLKKSA-QAI  153 (211)
Q Consensus        86 v~~~~~---~~i~~d-~~~i~~vs~l---~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd--eE~~iL~~Sa-~~l  153 (211)
                      ...+..   +.+... .++.+.+..+   +|  +||++             .++.++++++|+|  .|+..+++|. ++.
T Consensus       209 ~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a-------------~a~~~ii~ail~~~~~~~~v~~~s~~~~~  275 (323)
T PLN00106        209 KVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA-------------YAAARFADACLRGLNGEADVVECSYVQSE  275 (323)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH-------------HHHHHHHHHHHhccCCCceEEEEEEECcc
Confidence            111111   111111 1234444433   45  58887             8888899998886  3367888876 222


Q ss_pred             -Hh-hhcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        154 -KE-VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       154 -~~-~~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                       ++ ++-|+|++||++|+++++++ +||++|+++|++|++.|++
T Consensus       276 ~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~  319 (323)
T PLN00106        276 VTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKA  319 (323)
T ss_pred             cCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence             34 55689999999999999998 9999999999999998874

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=99.91  E-value=2.1e-24  Score=187.34  Aligned_cols=135  Identities=22%  Similarity=0.283  Sum_probs=116.4

Q ss_pred             CCceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccc
Q psy17692          4 SGKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYR   71 (211)
Q Consensus         4 ~~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~   71 (211)
                      +++.++.+|      +.++|.+|||++||||+|  | ||++||+  ++||+++++++++|      +||++|+|+||.+ 
T Consensus       112 ~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~--~-ld~~r~~--~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~-  185 (263)
T cd00650         112 DAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLG--T-LDPIRFR--RILAEKLGVDPDDVKVYILGEHGGSQVPDWSTV-  185 (263)
T ss_pred             CeEEEEecCcHHHHHHHHHHHhCCCchhEEEee--c-chHHHHH--HHHHHHhCCCccceEEEEEEcCCCceEeccccc-
Confidence            455555555      468999999999999999  9 9999999  99999999999999      9999999999988 


Q ss_pred             cccccccccccCcccccccc--chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHh
Q psy17692         72 PERTVSSRKNCIVPKELYCP--EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK  148 (211)
Q Consensus        72 i~~~il~~~v~g~pv~~~~~--~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~  148 (211)
                              +    +....+.  +++.+|++.++|++ +.+|+||+.+|+++|+||+||++|+.+++++.|+++|++.|..
T Consensus       186 --------~----~a~~~~~ii~ai~~~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~  253 (263)
T cd00650         186 --------R----IATSIADLIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQK  253 (263)
T ss_pred             --------h----HHHHHHHHHHHHHcCCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHH
Confidence                    3    1111111  78889999999999 5899999658999999999999999999999999999999999


Q ss_pred             hHHhHHhh
Q psy17692        149 SAQAIKEV  156 (211)
Q Consensus       149 Sa~~l~~~  156 (211)
                      |++.++..
T Consensus       254 s~~~~~~~  261 (263)
T cd00650         254 SADTLKKE  261 (263)
T ss_pred             HHHHHHHH
Confidence            99777654

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1494|consensus

Probab=99.08  E-value=7.9e-10  Score=97.30  Aligned_cols=144  Identities=14%  Similarity=0.139  Sum_probs=97.9

Q ss_pred             eechhhHHH---HHHhC-CCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCC-c-------cCCCceeeecccccccc
Q psy17692          7 TVSSRKNCI---VRKEL-YRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRT-V-------SSGKSCIVRKELYRPER   74 (211)
Q Consensus         7 ~~~~~~~~~---~k~sg-~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~-V-------eHGds~vp~~S~~~i~~   74 (211)
                      .|||+-+.+   +|..| |+|+|+||.   |.||..|.+  +|+++.++++|.+ +       ..|.+.+|+.|++...-
T Consensus       147 PVNstVPIaaevlKk~G~ydpkklfGV---TtLDvVRA~--tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~  221 (345)
T KOG1494|consen  147 PVNSTVPIAAEVLKKAGVYDPKKLFGV---TTLDVVRAN--TFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPF  221 (345)
T ss_pred             cccccchHHHHHHHHcCCCCccceece---ehhhhhhHH--HHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcc
Confidence            356665544   44455 999999999   999999999  9999999999944 4       55677779999984311


Q ss_pred             ccccc---------cccCcccc---------c--ccc------ch---hhccCCceeEeEeecC-ccccccceEeeeceE
Q psy17692         75 TVSSR---------KNCIVPKE---------L--YCP------EI---EDREQDRRKPAIHLLG-HHGIEEEVFLSLPCV  124 (211)
Q Consensus        75 ~il~~---------~v~g~pv~---------~--~~~------~~---i~~d~~~i~~vs~l~G-~yGi~~dV~~s~P~v  124 (211)
                      ....+         +.+|.-+-         .  ++.      ++   -.+++..+..|++... .+++   -||+.|.+
T Consensus       222 ~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~---~fFaspv~  298 (345)
T KOG1494|consen  222 RFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTEL---PFFATPVT  298 (345)
T ss_pred             cCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCc---cceeceEE
Confidence            11100         11221110         0  000      11   2333456777886554 3565   49999999


Q ss_pred             EecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692        125 MADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       125 ig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|++|+.++..+ .|+|.|++.|+.+...++..++
T Consensus       299 Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~  333 (345)
T KOG1494|consen  299 LGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIE  333 (345)
T ss_pred             ecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999987 8999999999888877766543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.01  E-value=1.7e-11  Score=110.01  Aligned_cols=67  Identities=25%  Similarity=0.346  Sum_probs=60.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      .++.++++++|+|+ ++.+++|+  ++.|+.   +-|+|++||++||+++++++||++|+++|++||+.||+.
T Consensus       245 ~a~~~i~~ail~d~-~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~  316 (321)
T PTZ00082        245 AAAIEMAEAYLKDK-KRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRL  316 (321)
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            78889999999997 89999998  666664   459999999999999999999999999999999999853

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.95  E-value=3.8e-11  Score=106.95  Aligned_cols=67  Identities=27%  Similarity=0.421  Sum_probs=60.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      .++.++++++|.|+ +..+++|+  ++.|+   ++-|+|++||++||+++++++||++|+++|++||+.||+.
T Consensus       230 ~~~~~i~~ai~~~~-~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~  301 (305)
T TIGR01763       230 ASVVEMVEAILKDR-KRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDEN  301 (305)
T ss_pred             HHHHHHHHHHhCCC-CeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            77888999999998 89999998  66665   4459999999999999999999999999999999999853

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=98.94  E-value=3.7e-11  Score=106.85  Aligned_cols=66  Identities=35%  Similarity=0.519  Sum_probs=59.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ ++.+++|+  ++.|+.   +-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus       229 ~a~~~~i~ail~d~-~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       229 MAVARIVEAILHDE-NRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHhC
Confidence            78889999999997 89999998  656654   45999999999999999999999999999999999984

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.87  E-value=1e-10  Score=104.71  Aligned_cols=66  Identities=23%  Similarity=0.383  Sum_probs=59.8

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|+|+ ++.+++|+  ++.|+.   +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus       239 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~  309 (319)
T PTZ00117        239 AAIVAMIEAYLKDE-KRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQE  309 (319)
T ss_pred             HHHHHHHHHHhcCC-CeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            78889999999997 89999997  666764   44999999999999999999999999999999999985

>KOG1495|consensus

Probab=98.87  E-value=9.9e-11  Score=102.48  Aligned_cols=66  Identities=35%  Similarity=0.470  Sum_probs=59.8

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhhhc----ccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEVFL----SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~~~----svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++..+++++|.+. ++++++|+  +++|++.+    |+||++|++|+..+++.+||++|.++|++||+.|++
T Consensus       254 lsva~l~~ail~n~-~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~  325 (332)
T KOG1495|consen  254 LSVADLAQAILRNL-RRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLE  325 (332)
T ss_pred             HHHHHHHHHHHhCc-CceeeeeeccccccCCCCceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHH
Confidence            55677899999998 89999997  77877753    999999999999999999999999999999999976

>PLN02602 lactate dehydrogenase

Probab=98.87  E-value=1.1e-10  Score=106.06  Aligned_cols=66  Identities=35%  Similarity=0.468  Sum_probs=60.0

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh-----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV-----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~-----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ ++.+++|+  ++.|+.     +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus       271 ~a~a~ii~ail~d~-~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~l~~  343 (350)
T PLN02602        271 YSVASLVRSLLRDQ-RRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWE  343 (350)
T ss_pred             HHHHHHHHHHHhcC-CCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            77889999999998 89999998  666665     34999999999999999999999999999999999985

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.87  E-value=1e-10  Score=104.26  Aligned_cols=66  Identities=33%  Similarity=0.511  Sum_probs=59.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|+|+ ++.+++|+  ++.|+.   +-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus       233 ~a~~~i~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~  303 (308)
T cd05292         233 LALARIVEAILRDE-NSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKE  303 (308)
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999997 89999998  656654   45999999999999999999999999999999999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.86  E-value=7.4e-11  Score=96.71  Aligned_cols=77  Identities=36%  Similarity=0.436  Sum_probs=66.7

Q ss_pred             eEeec-C--ccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhH--HhHHhhhc-----ccceeecCCceeEEe
Q psy17692        104 AIHLL-G--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA--QAIKEVFL-----SLPCVMADNGVTHIV  173 (211)
Q Consensus       104 vs~l~-G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~~~-----svP~vlg~~Gv~~ii  173 (211)
                      +...+ |  .||++             .++.+++++++.++ +..+++|+  ++.|+..+     |+|++||++|+++++
T Consensus        78 ii~~k~g~t~~s~A-------------~a~~~~v~ail~~~-~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~  143 (174)
T PF02866_consen   78 IIKAKGGSTSYSIA-------------AAAARIVEAILKDE-RRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIV  143 (174)
T ss_dssp             HHHHHSSSCHHHHH-------------HHHHHHHHHHHTTH-TEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEE
T ss_pred             eeeeccccCcCCHH-------------HHHHHHHHHHhhcc-cccccceeccccccCcccccceecceEEEcCCeeEEEe
Confidence            33345 5  68887             89999999999998 89999998  56666543     999999999999999


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHh
Q psy17692        174 N-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       174 ~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      + ++||++|+++|++||+.|++
T Consensus       144 ~~~~L~~~E~~~l~~sa~~l~~  165 (174)
T PF02866_consen  144 EDLPLSEEEQEKLKESAKELKK  165 (174)
T ss_dssp             CSBSSTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Confidence            9 99999999999999999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.85  E-value=8.9e-11  Score=105.53  Aligned_cols=67  Identities=13%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             ceEEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|+|+ |++++++|+  ++.|+.    +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus       246 ~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~l~~  319 (325)
T cd01336         246 KAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDATAKELVE  319 (325)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            77788999999985 589999998  667765    45999999999999999999999999999999999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.85  E-value=1.7e-10  Score=103.25  Aligned_cols=66  Identities=32%  Similarity=0.467  Sum_probs=60.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ ++.|++|+  ++.|+   ++-++|++||++|++++++++|+++|+++|++|++.+|+
T Consensus       232 ~a~a~~~~ail~d~-~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~  302 (313)
T COG0039         232 AALARMVEAILRDE-KRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKK  302 (313)
T ss_pred             HHHHHHHHHHHcCC-CceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            88899999999998 79999998  77555   555999999999999999999999999999999999986

>KOG1496|consensus

Probab=98.80  E-value=1.3e-08  Score=88.28  Aligned_cols=135  Identities=14%  Similarity=0.075  Sum_probs=95.4

Q ss_pred             hhHHHHHHh--CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccc
Q psy17692         11 RKNCIVRKE--LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus        11 ~~~~~~k~s--g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      ||-++.+..  ..|.+++-.+   |.||..|..  ..||.++|++..+|       +|+.+|+|+..+++|..     +.
T Consensus       135 TNali~~k~ApsIP~kNfs~l---TRLDhNRA~--~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~-----~~  204 (332)
T KOG1496|consen  135 TNALILKKFAPSIPEKNFSAL---TRLDHNRAL--AQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNT-----NG  204 (332)
T ss_pred             cchhHHhhhCCCCchhcchhh---hhhchhhHH--HHHHHhhCCchhhcceeEEecccccccCCCccceeeec-----cC
Confidence            344444443  3788888444   999999999  99999999999998       99999999999995421     11


Q ss_pred             cCcccccccc-------------------------------------c---hhhccCCceeEeE---eecCccccccceE
Q psy17692         82 CIVPKELYCP-------------------------------------E---IEDREQDRRKPAI---HLLGHHGIEEEVF  118 (211)
Q Consensus        82 ~g~pv~~~~~-------------------------------------~---~i~~d~~~i~~vs---~l~G~yGi~~dV~  118 (211)
                      +..|+.+...                                     +   .....+..+-=+|   +.+|.|||.+|+.
T Consensus       205 ~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli  284 (332)
T KOG1496|consen  205 GEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLI  284 (332)
T ss_pred             CcccHHHHhccchhhccchhhHHHhcchHhhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeE
Confidence            2245433221                                     0   0011111111133   5789999989999


Q ss_pred             eeeceEEecceEEEEe-cCCCCHHHHHHHHhhHHhHHhh
Q psy17692        119 LSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKEV  156 (211)
Q Consensus       119 ~s~P~vig~~GV~~Iv-e~iLsdeE~~iL~~Sa~~l~~~  156 (211)
                      +|+|+.+-. |-.+|+ .+.++|.-++++..+++++.+-
T Consensus       285 ~SfPv~~k~-g~wkiVqgl~iddf~r~km~~t~~EL~eE  322 (332)
T KOG1496|consen  285 FSFPVTIKN-GDWKIVQGLPIDDFSREKMDLTAKELKEE  322 (332)
T ss_pred             EEcceEecC-CceEEEcCcchhHHHHHhhhhhHHHHHHh
Confidence            999999975 666666 7899999999999998666543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.79  E-value=2.5e-10  Score=101.94  Aligned_cols=66  Identities=32%  Similarity=0.454  Sum_probs=59.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.+++++++.|+ ++.+++|+  ++.|+   .+-|+||+||++|++++++++||++|+++|++||+.|++
T Consensus       234 ~a~~~ii~ail~d~-~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         234 KSASRLIKAILLDE-RSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             HHHHHHHHHHHhCC-CeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHH
Confidence            78889999999997 79999998  55665   345999999999999999999999999999999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.78  E-value=3.4e-10  Score=101.77  Aligned_cols=163  Identities=12%  Similarity=0.056  Sum_probs=101.1

Q ss_pred             hhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhh----hhhhCCCCCCccCCCceeeeccccc--cccc---------
Q psy17692         11 RKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTV----SSRKNRPKRTVSSGKSCIVRKELYR--PERT---------   75 (211)
Q Consensus        11 ~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~l----a~~~~v~~~~VeHGds~vp~~S~~~--i~~~---------   75 (211)
                      .++.+.+..-..++++|-... --+|.  +.  +..    .+..+.+|++| -|-++ .+.++.+  |.+.         
T Consensus       105 ~~~i~~~i~~~~~~~iviv~S-NPvdv--~~--~~~~~~~~~~sg~p~~~v-iG~g~-LDs~R~r~~la~~l~v~~~~V~  177 (321)
T PTZ00325        105 VRDLVAAVASSAPKAIVGIVS-NPVNS--TV--PIAAETLKKAGVYDPRKL-FGVTT-LDVVRARKFVAEALGMNPYDVN  177 (321)
T ss_pred             HHHHHHHHHHHCCCeEEEEec-CcHHH--HH--HHHHhhhhhccCCChhhe-eechh-HHHHHHHHHHHHHhCcChhheE
Confidence            445555555566777777653 23555  33  333    36678999999 44443 5555442  1110         


Q ss_pred             -ccccccc-----------CccccccccchhhccC-CceeEeEeec---C--ccccccceEeeeceEEecceEEEEecCC
Q psy17692         76 -VSSRKNC-----------IVPKELYCPEIEDREQ-DRRKPAIHLL---G--HHGIEEEVFLSLPCVMADNGVTHIVNQP  137 (211)
Q Consensus        76 -il~~~v~-----------g~pv~~~~~~~i~~d~-~~i~~vs~l~---G--~yGi~~dV~~s~P~vig~~GV~~Ive~i  137 (211)
                       ..-...+           |.|+...-.+.+.... ++.+.+..++   |  +||++             .++.++++++
T Consensus       178 ~~VlGeHGd~s~v~~~S~~g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a-------------~a~~~i~~ai  244 (321)
T PTZ00325        178 VPVVGGHSGVTIVPLLSQTGLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMA-------------YAAAEWSTSV  244 (321)
T ss_pred             EEEEeecCCcccccchhccCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHH-------------HHHHHHHHHH
Confidence             0000111           3333210001111111 2344455444   5  68998             9999999999


Q ss_pred             CCH---HHHHHHHhhH-HhHHh---hhcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        138 LTQ---EEIEKLKKSA-QAIKE---VFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       138 Lsd---eE~~iL~~Sa-~~l~~---~~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      |+|   + ++.++++. ++.|+   ++-|+||+||++||+++++ ++||++|+++|++|++.|++
T Consensus       245 l~~~~~~-~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~  308 (321)
T PTZ00325        245 LKALRGD-KGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKK  308 (321)
T ss_pred             HhhcCCC-CCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            965   6 78888764 55555   3459999999999999999 99999999999999999974

>cd00704 MDH Malate dehydrogenase

Probab=98.77  E-value=3.5e-10  Score=101.68  Aligned_cols=66  Identities=18%  Similarity=0.210  Sum_probs=59.4

Q ss_pred             ceEEEEecCCCCHHHH--HHHHhhH--HhHH-hh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEI--EKLKKSA--QAIK-EV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~--~iL~~Sa--~~l~-~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++|+ +  +++++|+  ++.| ++    +-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus       243 ~a~~~iv~ail~~~-~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~  317 (323)
T cd00704         243 KAIADHVKDWLFGT-PPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEELIE  317 (323)
T ss_pred             HHHHHHHHHHHhCC-CCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999997 7  8999997  6666 54    45999999999999999999999999999999999986

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.74  E-value=4.8e-10  Score=99.63  Aligned_cols=66  Identities=35%  Similarity=0.495  Sum_probs=59.0

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ +..+++|+  ++.|+   ++-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus       232 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~  302 (306)
T cd05291         232 TALARIVKAILNDE-NAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKE  302 (306)
T ss_pred             HHHHHHHHHHHcCC-CEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            67788999999986 89999998  66665   344999999999999999999999999999999999985

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=98.74  E-value=5.1e-10  Score=100.24  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=64.0

Q ss_pred             ceeEeEee---cC--ccccccceEeeeceEEecceEEEEecCCCC---HHHHHHHHhhH-HhHHh---hhcccceeecCC
Q psy17692        100 RRKPAIHL---LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLT---QEEIEKLKKSA-QAIKE---VFLSLPCVMADN  167 (211)
Q Consensus       100 ~i~~vs~l---~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLs---deE~~iL~~Sa-~~l~~---~~~svP~vlg~~  167 (211)
                      +.+.+..+   +|  +||++             .++.+++++++.   |+ +..++.|. ++.|+   ++-|+|++||++
T Consensus       208 ~g~~Ii~~k~gkg~t~~~ia-------------~a~~~iv~ail~~~~d~-~~v~~~s~~~g~yg~~~v~~s~P~~ig~~  273 (312)
T TIGR01772       208 AGTEVVKAKAGAGSATLSMA-------------FAGARFVLSLVRGLKGE-EGVVECAYVESDGVTEATFFATPLLLGKN  273 (312)
T ss_pred             HHHHHHhCccCCCChhHHHH-------------HHHHHHHHHHHHhhCCC-ccEEEEEEEccCCCcCceEEEEEEEEcCC
Confidence            34444433   45  58998             888899999994   55 68888544 44444   445999999999


Q ss_pred             ceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        168 GVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       168 Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ||++++++ +||++|+++|++|++.|++
T Consensus       274 Gv~~i~~~~~L~~~E~~~l~~S~~~i~~  301 (312)
T TIGR01772       274 GVEKRLGIGKLSSFEEKMLNGALPELKK  301 (312)
T ss_pred             eeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            99999999 9999999999999999963

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.72  E-value=5.7e-10  Score=99.06  Aligned_cols=66  Identities=39%  Similarity=0.506  Sum_probs=59.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|+   .+-|+|+++|++|++++++++||++|+++|++|++.|++
T Consensus       227 ~a~~~~~~ai~~~~-~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~  297 (300)
T cd00300         227 TAIADIVKSILLDE-RRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKE  297 (300)
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            88889999999997 89999998  66665   445999999999999999999999999999999999985

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.72  E-value=6.2e-10  Score=99.61  Aligned_cols=66  Identities=39%  Similarity=0.654  Sum_probs=59.4

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ +..+++|+  ++.|+.    +-++||+||++|++++++++||++|+++|++|++.||+
T Consensus       237 ~a~~~ii~ail~d~-~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~  308 (312)
T cd05293         237 LSVADLVDAILRNT-GRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWE  308 (312)
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            78888999999998 79999998  656654    44999999999999999999999999999999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=98.72  E-value=6.1e-10  Score=99.79  Aligned_cols=67  Identities=18%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             ceEEEEecCCCCHH-HHHHHHhhH--H-h-HHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQE-EIEKLKKSA--Q-A-IKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsde-E~~iL~~Sa--~-~-l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.+++++++.++ +++++++|+  + + .|++    +-|+|++||++|++++++ ++||++|+++|++||+.|++
T Consensus       227 ~ai~~iv~ail~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~  303 (313)
T TIGR01756       227 KASLQHMKAWLFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFE  303 (313)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            37888999999932 379999998  4 3 7775    349999999999999999 99999999999999999865

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PLN00135 malate dehydrogenase

Probab=98.72  E-value=5.5e-10  Score=99.93  Aligned_cols=74  Identities=9%  Similarity=0.040  Sum_probs=64.7

Q ss_pred             cC--ccccccceEeeeceEEecceEEEEecCCCCH-HHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCC
Q psy17692        108 LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ-EEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLT  178 (211)
Q Consensus       108 ~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd-eE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~  178 (211)
                      +|  +||++             .++.+++++++++ .+++++++|+  ++.|++    +-|+|+++|++|++.+++++||
T Consensus       217 kg~t~~~ia-------------~a~~~iv~ai~~~~~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~  283 (309)
T PLN00135        217 KLSSALSAA-------------SSACDHIRDWVLGTPEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSID  283 (309)
T ss_pred             CccHHHHHH-------------HHHHHHHHHHHhCCcCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCCCCC
Confidence            55  68888             8899999998883 3489999998  767775    3499999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy17692        179 QEEIEKLKKSAQAIKI  194 (211)
Q Consensus       179 ~~E~~~l~~Sa~~ik~  194 (211)
                      ++|+++|++||+.||.
T Consensus       284 ~~E~~~l~~S~~~lk~  299 (309)
T PLN00135        284 EFSRKKMDATAKELKE  299 (309)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999974

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.71  E-value=6.3e-10  Score=99.99  Aligned_cols=71  Identities=11%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             eEEEEecCCCCHHH-HHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh-ccccc
Q psy17692        129 GVTHIVNQPLTQEE-IEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI-RDFVK  199 (211)
Q Consensus       129 GV~~Ive~iLsdeE-~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~-~~~~~  199 (211)
                      ++.++++++|+|+. ++++++|+  ++.|++    +-|+|++||++||+++++++||++|+++|++|++.||+ ||++|
T Consensus       243 a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~l~~~~~~~~  321 (322)
T cd01338         243 AAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELLEEREAVK  321 (322)
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            78889999999972 48999998  667765    34999999999999999999999999999999998875 55443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.69  E-value=8.4e-10  Score=97.64  Aligned_cols=66  Identities=30%  Similarity=0.465  Sum_probs=59.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++|.++ +.++++|+  ++.|+.   +-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus       227 ~~~~~i~~ail~~~-~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~  297 (300)
T cd01339         227 AAIAEMVEAILKDK-KRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKE  297 (300)
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            67788999999997 89999997  666654   45999999999999999999999999999999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN00106 malate dehydrogenase

Probab=98.69  E-value=4.5e-08  Score=88.17  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=54.8

Q ss_pred             chhhcc---CCceeEeEeecCccccccc-eEeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhh
Q psy17692         92 EIEDRE---QDRRKPAIHLLGHHGIEEE-VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus        92 ~~i~~d---~~~i~~vs~l~G~yGi~~d-V~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      ++|++|   +++++|+++++++|   +| +|+|+|++||++|+.+++++ .|+++|++.|..|++.+++.+
T Consensus       254 ~ail~~~~~~~~v~~~s~~~~~~---~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~  321 (323)
T PLN00106        254 DACLRGLNGEADVVECSYVQSEV---TELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASI  321 (323)
T ss_pred             HHHHhccCCCceEEEEEEECccc---CCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            667774   66899999888765   45 99999999999999999999 999999999999998877653

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.68  E-value=1.1e-09  Score=97.66  Aligned_cols=66  Identities=24%  Similarity=0.386  Sum_probs=58.3

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH-h---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK-E---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~-~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ +..+++|+  ++.+ +   .+-++|++||++||+++++++||++|+++|++||+.||+
T Consensus       233 ~~~~~ii~ail~~~-~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~  304 (309)
T cd05294         233 SAISNLVRTIANDE-RRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKK  304 (309)
T ss_pred             HHHHHHHHHHHCCC-CeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            77788999999998 89999998  4444 3   345999999999999999999999999999999999985

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK05086 malate dehydrogenase; Provisional

Probab=98.66  E-value=1.3e-09  Score=97.41  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=65.0

Q ss_pred             ceeEeEeec---C--ccccccceEeeeceEEecceEEEEecCCCC---HHHHHHHHhhH---HhHHhhhcccceeecCCc
Q psy17692        100 RRKPAIHLL---G--HHGIEEEVFLSLPCVMADNGVTHIVNQPLT---QEEIEKLKKSA---QAIKEVFLSLPCVMADNG  168 (211)
Q Consensus       100 ~i~~vs~l~---G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLs---deE~~iL~~Sa---~~l~~~~~svP~vlg~~G  168 (211)
                      +.+.+...+   |  .||++             .++.+++++++.   ++ ++.++.|.   ++.++++-|+|++||++|
T Consensus       209 ~g~~ii~~k~~~g~t~~~~a-------------~a~~~~v~ai~~~~~~~-~~v~~~~~~~~~g~~~v~~s~P~~ig~~G  274 (312)
T PRK05086        209 AGTEVVEAKAGGGSATLSMG-------------QAAARFGLSLVRALQGE-QGVVECAYVEGDGKYARFFAQPVLLGKNG  274 (312)
T ss_pred             HHHHHHhcccCCCCchhhHH-------------HHHHHHHHHHHhcCCCC-CcEEEEEEEeccCCcceEEEEEEEEcCCe
Confidence            344455444   5  68998             889999999984   45 68888652   344556679999999999


Q ss_pred             eeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        169 VTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       169 v~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +++++++ +||++|+++|++||+.|++
T Consensus       275 v~~i~~~~~L~~~E~~~l~~s~~~i~~  301 (312)
T PRK05086        275 VEERLPIGTLSAFEQNALEGMLDTLKK  301 (312)
T ss_pred             eEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999 9999999999999999975

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.65  E-value=1.3e-09  Score=97.49  Aligned_cols=66  Identities=30%  Similarity=0.460  Sum_probs=58.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ +..+++|+  ++.|+   ++-|+|+++|++||+++++++||++|+++|++|++.|++
T Consensus       238 ~~~~~i~~ail~~~-~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~  308 (315)
T PRK00066        238 MALARITKAILNNE-NAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKE  308 (315)
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            56778899999987 79999998  66666   344999999999999999999999999999999999985

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.65  E-value=1.7e-09  Score=96.78  Aligned_cols=81  Identities=16%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             ceeEeEee---cC--ccccccceEeeeceEEecceEEEEecCCCCH---HHHHHHHhh-H--HhHHhhhcccceeecCCc
Q psy17692        100 RRKPAIHL---LG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ---EEIEKLKKS-A--QAIKEVFLSLPCVMADNG  168 (211)
Q Consensus       100 ~i~~vs~l---~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd---eE~~iL~~S-a--~~l~~~~~svP~vlg~~G  168 (211)
                      +.+.+..+   +|  +||++             .++.++++++|+|   + +..++.| .  ++..+++-|+|++||++|
T Consensus       209 ~g~~Ii~~k~gkg~t~~~~a-------------~a~~~iv~aIl~~~~~~-~~~~~~s~~~~~g~~~v~~s~P~~ig~~G  274 (310)
T cd01337         209 GGDEVVKAKAGAGSATLSMA-------------YAGARFANSLLRGLKGE-KGVIECAYVESDVTEAPFFATPVELGKNG  274 (310)
T ss_pred             HHHHHHhCccCCCCcchhHH-------------HHHHHHHHHHHHhcCCC-cceEEEEEEeccCCCceEEEEEEEEeCCe
Confidence            34445543   35  68998             9999999999955   4 4667777 2  333445669999999999


Q ss_pred             eeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        169 VTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       169 v~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      |++++++ +||++|+++|++||+.||+
T Consensus       275 v~~i~~l~~L~~~E~~~l~~S~~~i~~  301 (310)
T cd01337         275 VEKNLGLGKLNDYEKKLLEAALPELKK  301 (310)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999 6999999999999999974

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=98.63  E-value=1.9e-09  Score=97.06  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             ceEEEEecCCCCHH-HHHHHHhhH--Hh-HHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQE-EIEKLKKSA--QA-IKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsde-E~~iL~~Sa--~~-l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++|+ .++++++|+  ++ .|+.    +-|+|++||++|++++++ ++||++|+++|++||+.||+
T Consensus       243 ~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~lk~  318 (323)
T TIGR01759       243 NAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDELLE  318 (323)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            67888999999996 368999997  76 7765    459999999999999999 99999999999999999986

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05442 malate dehydrogenase; Provisional

Probab=98.57  E-value=2.9e-09  Score=95.95  Aligned_cols=66  Identities=14%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             ce-EEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NG-VTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~G-V~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .. +.+++++++++. +++++++|+  ++.|++    +-|+|++|| +|++++++ ++||++|+++|++|++.||+
T Consensus       243 ~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~  317 (326)
T PRK05442        243 ANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAELEE  317 (326)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            66 478999999884 489999998  667765    349999999 99999966 99999999999999999985

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.52  E-value=4.6e-09  Score=94.51  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=57.7

Q ss_pred             ceEEEEecCCC--CHHHHHHHHhhH--HhH-Hhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPL--TQEEIEKLKKSA--QAI-KEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~l-~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.+++++++  +|+ ++++++|+  ++. |++    +-|+|++||++|++.+.+++||++|+++|++||+.||+
T Consensus       243 ~~~~~i~~ai~~~~~~-~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~lk~  317 (324)
T TIGR01758       243 KAAVDQMHDWVLGTPE-GTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKELEE  317 (324)
T ss_pred             HHHHHHHHHHhcCCCC-CeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999  676 89999998  666 765    34999999988898888899999999999999999974

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.47  E-value=8.3e-09  Score=91.27  Aligned_cols=66  Identities=27%  Similarity=0.411  Sum_probs=57.3

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++|.++ +..+++|+  ++.|+.   .-|+||+||++||+++++++||++|+++|++||+.||+
T Consensus       231 ~~~~~ii~ail~~~-~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  301 (307)
T PRK06223        231 ASIAEMVEAILKDK-KRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKK  301 (307)
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            56677889999886 79999987  555664   34999999999999999999999999999999999984

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=98.34  E-value=3.7e-08  Score=92.11  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=55.3

Q ss_pred             ceEEEEecCCC--CHHHHHHHHhhH--Hh-HHhh----hcccceeecCCceeEEe-cCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPL--TQEEIEKLKKSA--QA-IKEV----FLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~-l~~~----~~svP~vlg~~Gv~~ii-~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.+++.+++  +|+ ++.+++|+  ++ .|++    +-|+|++||++|+++++ +++||++|+++|++|++.|++
T Consensus       340 ~ai~~~I~ail~~~d~-~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa~~L~~  415 (444)
T PLN00112        340 VSIADAIKSLVTPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSEAELLA  415 (444)
T ss_pred             HHHHHHHHHHHcCCCC-CeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence            44555667666  887 89999998  66 4774    34999999999999999 799999999999999988853

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=98.30  E-value=4.4e-08  Score=90.17  Aligned_cols=65  Identities=14%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             ceEEEEecCCC--CHHHHHHHHhhH--HhH-Hhh----hcccceeecCCceeEEe-cCCCCHHHHHHHHHHHHHHH
Q psy17692        128 NGVTHIVNQPL--TQEEIEKLKKSA--QAI-KEV----FLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIK  193 (211)
Q Consensus       128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~l-~~~----~~svP~vlg~~Gv~~ii-~l~L~~~E~~~l~~Sa~~ik  193 (211)
                      .++.+++..++  +|+ ++++++|+  ++. |++    +-|+|++||++|+++++ +++||++|+++|++|++.|+
T Consensus       284 ~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~  358 (387)
T TIGR01757       284 VSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELL  358 (387)
T ss_pred             HHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            45566677777  786 79999998  664 774    34999999999999996 99999999999999998874

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.26  E-value=5.9e-08  Score=84.28  Aligned_cols=66  Identities=30%  Similarity=0.482  Sum_probs=56.3

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ +..+++|+  ++.|++    .-|+||+||++||+++++++|+++|+++|++|++.++.
T Consensus       189 ~~~~~ii~ai~~~~-~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~  260 (263)
T cd00650         189 TSIADLIRSLLNDE-GEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKK  260 (263)
T ss_pred             HHHHHHHHHHHcCC-CEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            45566788888886 78999988  666662    34999999999999999999999999999999999874

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd05295 MDH_like Malate dehydrogenase-like

Probab=98.25  E-value=5.1e-08  Score=91.30  Aligned_cols=67  Identities=10%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             ceEEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++..+++.++.++ +.+.+++|+  ++.|++    +-|+|+++|++|++.+++++||++|+++|++|++.|++
T Consensus       372 ~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~~kL~~S~~eL~~  445 (452)
T cd05295         372 HAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILREVLKRITSDLIQ  445 (452)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            78888999999986 468999998  777775    34999999999999999999999999999999987764

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.54  E-value=3.6e-05  Score=71.81  Aligned_cols=63  Identities=11%  Similarity=0.021  Sum_probs=52.9

Q ss_pred             CCceechhhHH------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccc
Q psy17692          4 SGKTVSSRKNC------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELY   70 (211)
Q Consensus         4 ~~~~~~~~~~~------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~   70 (211)
                      .+.++|.+|++      ++|.  +|++||||+|  +.  ++||+  ++||+.+|+++++|       +||    +.||.+
T Consensus       136 ~a~lin~TNP~di~t~a~~~~--~p~~rviG~c--~~--~~r~~--~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~  203 (425)
T cd05197         136 DAWYLNFTNPAGEVTEAVRRY--VPPEKAVGLC--NV--PIGVM--EIVAKLLGESEEKVDWQYAGLNHG----IWLNRV  203 (425)
T ss_pred             CcEEEecCChHHHHHHHHHHh--CCCCcEEEEC--CC--HHHHH--HHHHHHhCCCHHHeEEEEEeccCe----EeeEeE
Confidence            45667777764      5666  4899999999  88  99999  99999999999999       898    889999


Q ss_pred             ccccccccccccCcccc
Q psy17692         71 RPERTVSSRKNCIVPKE   87 (211)
Q Consensus        71 ~i~~~il~~~v~g~pv~   87 (211)
                               +++|.|+.
T Consensus       204 ---------~~~G~~l~  211 (425)
T cd05197         204 ---------RYNGGDVT  211 (425)
T ss_pred             ---------EECCeecH
Confidence                     77887764

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=95.35  E-value=0.033  Score=52.33  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=42.3

Q ss_pred             chhhccCCceeEeE-eecCccc-cccceEeeeceEEecceEEEEecCCCCHHH
Q psy17692         92 EIEDREQDRRKPAI-HLLGHHG-IEEEVFLSLPCVMADNGVTHIVNQPLTQEE  142 (211)
Q Consensus        92 ~~i~~d~~~i~~vs-~l~G~yG-i~~dV~~s~P~vig~~GV~~Ive~iLsdeE  142 (211)
                      ++|.+|++.+++++ ..+|.|+ +.+|+++++||+||++|+..+---.|.+..
T Consensus       324 ~aI~~d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~  376 (437)
T cd05298         324 ASIAYNTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFY  376 (437)
T ss_pred             HHHHcCCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHH
Confidence            56788889999999 5788886 337999999999999999998655677763

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK15076 alpha-galactosidase; Provisional

Probab=94.27  E-value=0.026  Score=52.88  Aligned_cols=48  Identities=8%  Similarity=0.044  Sum_probs=40.3

Q ss_pred             CCceechhhHH---HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692          4 SGKTVSSRKNC---IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV   57 (211)
Q Consensus         4 ~~~~~~~~~~~---~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V   57 (211)
                      ++.++|.+|++   ++-..++|++||||++ +|.||++     +.||+.+|+++++|
T Consensus       140 ~a~iin~tNP~divt~~~~~~~~~rviG~c-~~~~~~~-----~~ia~~l~v~~~~v  190 (431)
T PRK15076        140 DALLLNYVNPMAMNTWAMNRYPGIKTVGLC-HSVQGTA-----EQLARDLGVPPEEL  190 (431)
T ss_pred             CeEEEEcCChHHHHHHHHhcCCCCCEEEEC-CCHHHHH-----HHHHHHhCCCHHHe
Confidence            46788899987   3444599999999998 6999987     56799999999999

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=90.81  E-value=0.12  Score=48.35  Aligned_cols=45  Identities=9%  Similarity=0.117  Sum_probs=35.8

Q ss_pred             CCceechhhHH------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692          4 SGKTVSSRKNC------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV   57 (211)
Q Consensus         4 ~~~~~~~~~~~------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V   57 (211)
                      .+..+|.+|++      ++|.+   ++||||++  +.  ++|++  ++||+.+|+++++|
T Consensus       137 da~lin~TNP~~ivt~a~~k~~---~~rviGlc--~~--~~r~~--~~ia~~lg~~~~~v  187 (419)
T cd05296         137 DAWLINFTNPAGIVTEAVLRHT---GDRVIGLC--NV--PIGLQ--RRIAELLGVDPEDV  187 (419)
T ss_pred             CeEEEEecCHHHHHHHHHHHhc---cCCEEeeC--Cc--HHHHH--HHHHHHhCCCHHHc
Confidence            34566777764      35554   89999997  55  48999  99999999999999

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>KOG1494|consensus

Probab=87.87  E-value=0.8  Score=41.17  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=31.2

Q ss_pred             ccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        159 SLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       159 svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +.|..||++||++++.+ +||++|++.|+++...+|.
T Consensus       294 aspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~  330 (345)
T KOG1494|consen  294 ATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKK  330 (345)
T ss_pred             eceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHH
Confidence            56899999999999854 6999999999998877764

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=84.00  E-value=0.085  Score=49.63  Aligned_cols=58  Identities=9%  Similarity=0.104  Sum_probs=44.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh-----hhcccceeecCCceeEEecCCCCHHHHHHHH
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE-----VFLSLPCVMADNGVTHIVNQPLTQEEIEKLK  186 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~-----~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~  186 (211)
                      ..+.++++++++|+ +..+++|+  ++.++     ..-++||+||++||+.+---+|.+.-...++
T Consensus       317 ~~a~~ii~aI~~d~-~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~  381 (437)
T cd05298         317 EYIVDLAASIAYNT-KERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLME  381 (437)
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHHHHHHH
Confidence            45667889999988 79999998  44444     3349999999999999966677776554433

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=83.69  E-value=0.55  Score=43.82  Aligned_cols=44  Identities=11%  Similarity=-0.021  Sum_probs=35.0

Q ss_pred             CceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692          5 GKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV   57 (211)
Q Consensus         5 ~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V   57 (211)
                      +..++.+|+      .++|.++   .|+||++  +.  +.|++  +.+|+.+++++++|
T Consensus       139 a~~i~~tNPv~i~t~~~~k~~~---~rviG~c--~~--~~~~~--~~~a~~l~~~~~~v  188 (423)
T cd05297         139 AWLLNYANPMAELTWALNRYTP---IKTVGLC--HG--VQGTA--EQLAKLLGEPPEEV  188 (423)
T ss_pred             CEEEEcCChHHHHHHHHHHhCC---CCEEEEC--Cc--HHHHH--HHHHHHhCCCHHHe
Confidence            344455554      4567776   7999998  66  89999  99999999999999

linked to 3D####ucture

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		6e-09
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		1e-05
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		6e-09
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		1e-05
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		3e-08
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		2e-05
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		8e-08
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		8e-05
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		2e-07
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		1e-04
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		2e-07
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		2e-05
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		5e-05
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		5e-05
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		4e-07
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		8e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		5e-07
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		6e-05
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		5e-07
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		6e-05
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		1e-06
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		5e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-06
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-04
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-06
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-04
2i6t_A	303	Orthorhombic Structure Of The Ldh Domain Of Human U		6e-06
2i6t_A	303	Orthorhombic Structure Of The Ldh Domain Of Human U		1e-04
3ldh_A	330	A Comparison Of The Structures Of Apo Dogfish M4 La		1e-04
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-04
1guy_A	309	Structural Basis For Thermophilic Protein Stability		4e-04
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		5e-04
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		5e-04
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		6e-04
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		8e-04
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		8e-04

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct: 279 GMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 326

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 155 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  +
Sbjct: 286 EVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 323

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct: 279 GMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 326

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 155 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  +
Sbjct: 286 EVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 323

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GIE EVFLSLPCV+   G+T ++NQ L  +E+ +LK SA  +  +
Sbjct: 280 GMYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTLWGI 327

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
            EVFLSLPCV+   G+T ++NQ L  +E+ +LK SA  +
Sbjct: 286 NEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTL 324

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 100 RRKPAIHLL-GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 153
           R  P   L+ G HGI+EEVFLS+PCV+ ++G+T  V   +T EE   LKKSA  +
Sbjct: 268 RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTL 322

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  L K    IKE VFLS+PCV+ ++G+T  V   +T EE   LKKSA  +
Sbjct: 272 VTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTL 322

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 37/48 (77%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G HG+++EVFLS+PCV+ ++G+T +++  L  EE ++L+KSA+ +  V
Sbjct: 278 GMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQLQKSAETLWGV 325

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIK-EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  L +    +K EVFLS+PCV+ ++G+T +++  L  EE ++L+KSA+ +
Sbjct: 272 VSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQLQKSAETL 322

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 107 LLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           L G +GI+E+VFLS+PCV+  NG++ +V   LT EE   LKKSA  +  +
Sbjct: 276 LKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGI 325

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           I  + K    IKE VFLS+PCV+  NG++ +V   LT EE   LKKSA  +
Sbjct: 272 ISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTL 322

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI+++VFLS+PC++  NG++ +V   LT EE  +LKKSA  +  +
Sbjct: 278 GLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGI 325

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  + K    IK+ VFLS+PC++  NG++ +V   LT EE  +LKKSA  +
Sbjct: 272 VSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTL 322

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI+++VFLS+PC++  NG++ +V   LT EE  +LKKSA  +  +
Sbjct: 278 GLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGI 325

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  + K    IK+ VFLS+PC++  NG++ +V   LT EE  +LKKSA  +
Sbjct: 272 VSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTL 322

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G HG+ EEVFLS+PC++ ++G+T +V+  L  +E ++L KSA+ +  V
Sbjct: 279 GMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQLVKSAETLWGV 326

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAI-KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  L K    + +EVFLS+PC++ ++G+T +V+  L  +E ++L KSA+ +
Sbjct: 273 VSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQLVKSAETL 323

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI+E+VFLS+PC++  NG++ +V   LT +E  +LKKSA  +  +
Sbjct: 279 GLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGI 326

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           I  + K    IKE VFLS+PC++  NG++ +V   LT +E  +LKKSA  +
Sbjct: 273 ISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTL 323

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI+E+VFLS+PC++  NG++ +V   LT +E  +LKKSA  +  +
Sbjct: 278 GLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGI 325

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           I  + K    IKE VFLS+PC++  NG++ +V   LT +E  +LKKSA  +
Sbjct: 272 ISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTL 322

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           G +GI+E VFLS+PC++  NG++ +V   LT EE   LKKSA  +  +
Sbjct: 279 GLYGIKENVFLSVPCILGQNGISDVVKVTLTPEEEAHLKKSADTLWGI 326

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           I  + K    IKE VFLS+PC++  NG++ +V   LT EE   LKKSA  +
Sbjct: 273 ISTMIKGLYGIKENVFLSVPCILGQNGISDVVKVTLTPEEEAHLKKSADTL 323

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 111 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +GI++ VFLSLPCV+ D+G+++IV   L   E ++L+KSA  + ++
Sbjct: 279 YGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDI 324

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  + K    IK+ VFLSLPCV+ D+G+++IV   L   E ++L+KSA  +
Sbjct: 271 VSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTL 321

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 111 HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +GI++ VFLSLPCV+ D+G+++IV   L   E ++L+KSA  + ++
Sbjct: 278 YGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDI 323

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 143 IEKLKKSAQAIKE-VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
           +  + K    IK+ VFLSLPCV+ D+G+++IV   L   E ++L+KSA  +
Sbjct: 270 VSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTL 320

>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A Length = 303

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAI 153
           G++ I  EVFLSLPC++  NGV+ ++   L ++ + EKL+ SA +I
Sbjct: 249 GYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSI 294

>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 130 VTHIVNQPLTQEEIEKLKKSAQAIK-EVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKK 187
           V  IVN       +  L K    I  EVFLSLPC++  NGV+ ++   L ++ + EKL+ 
Sbjct: 230 VDSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQS 289
Query: 188 SAQAI 192
           SA +I
Sbjct: 290 SASSI 294

>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate Dehydrogenase And Its Ternary Complexes Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Query: 111 HGIEEEVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAIKEV 156
           +GI++ VFLSLPCV+ +NG++H  IV   L  +E ++L+KSA  + ++
Sbjct: 278 YGIKDNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLWDI 324

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 96  REQDRRKP-AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           +++ R  P A +L G +G+ + ++  +P ++   GV  I+  PL +EE+  L  SA+A++
Sbjct: 242 KDKKRVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 300
Query: 155 EVFLSL 160
               +L
Sbjct: 301 ATLDTL 306

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 96  REQDRRKP-AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           +++ R  P A +L G +G+ + ++  +P ++   GV  I+  PL +EE+  L  SA+A++
Sbjct: 242 KDKKRVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 300
Query: 155 EVFLSL 160
               +L
Sbjct: 301 ATLDTL 306

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 96  REQDRRKP-AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           +++ R  P A +L G +G+ + ++  +P ++   GV  I+  PL +EE+  L  SA+A++
Sbjct: 242 KDKKRVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 300
Query: 155 EVFLSL 160
               +L
Sbjct: 301 ATLDTL 306

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 96  REQDRRKP-AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           +++ R  P A +L G +G+ + ++  +P ++   GV  I+  PL +EE+  L  SA+A++
Sbjct: 242 KDKKRVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 300
Query: 155 EVFLSL 160
               +L
Sbjct: 301 ATLDTL 306

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 65  VRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCV 124
           +   L R  + + + +N ++P  +Y                   G +GI + +++  P V
Sbjct: 238 IATALARISKAILNDENAVLPLSVYMD-----------------GQYGIND-LYIGTPAV 279
Query: 125 MADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           +  NG+ +I+  PLT  E E ++KSA  +K+V 
Sbjct: 280 INRNGIQNILEIPLTDHEEESMQKSASQLKKVL 312

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 65  VRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCV 124
           +   L R  + + + +N ++P  +Y                   G +G+ + +++  P V
Sbjct: 239 IATALARISKAILNDENAVLPLSVYMD-----------------GQYGLND-IYIGTPAV 280
Query: 125 MADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           +  NG+ +I+  PLT  E E ++KSA  +K+V 
Sbjct: 281 INRNGIQNILEIPLTDHEEESMQKSASQLKKVL 313

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 65  VRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCV 124
           +   L R  + + + +N ++P  +Y                   G +G+ + +++  P V
Sbjct: 239 IATALARISKAILNDENAVLPLSVYMD-----------------GQYGLND-IYIGTPAV 280
Query: 125 MADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           +  NG+ +I+  PLT  E E ++KSA  +K+V 
Sbjct: 281 INRNGIQNILEIPLTDHEEESMQKSASQLKKVL 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	2e-15
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	8e-11
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	5e-14
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-09
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-13
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-11
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	2e-13
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	2e-11
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	2e-13
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	3e-11
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	3e-13
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	2e-11
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	5e-13
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	5e-11
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	6e-13
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	4e-11
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	6e-13
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	5e-11
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	7e-13
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	5e-11
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	9e-13
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	7e-11
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-12
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-10
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-12
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	3e-10
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	2e-12
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-07
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-12
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	8e-11
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	4e-11
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	3e-09
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	4e-11
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	5e-09
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	2e-10
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	4e-08
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	1e-09
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	6e-08
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-09
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-07
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	2e-09
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	1e-07
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	2e-09
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-07
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-09
3tl2_A	315	Malate dehydrogenase; center for structural genomi	1e-07
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-09
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-07
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	5e-09
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	4e-08
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	5e-09
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-07
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	9e-09
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	2e-07
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	1e-08
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	2e-05
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	4e-06
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	1e-04
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	6e-05
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	6e-05
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	8e-04

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
            + G +GI+E+VFLS+PC++  NG++ +V   LT +E  +LKKSA  +  +   L
Sbjct: 275 MIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKEL 329

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           ++VFLS+PC++  NG++ +V   LT +E  +LKKSA  + 
Sbjct: 284 EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLW 323

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score = 68.0 bits (167), Expect = 5e-14
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAIKEVFLSL 160
           G++ I  EVFLSLPC++  NGV+ ++   L ++ + EKL+ SA +I  +   L
Sbjct: 249 GYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL 301

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEI-EKLKKSAQAIK 193
            EVFLSLPC++  NGV+ ++   L ++ + EKL+ SA +I 
Sbjct: 255 SEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIH 295

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
                 G+ E V LSLP ++   GV   V   L+ EE   L++SA+ +KE   +L
Sbjct: 255 FTPEVAGVLE-VSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILKEAAFAL 308

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           + EV LSLP ++   GV   V   L+ EE   L++SA+ +K
Sbjct: 262 VLEVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILK 302

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           + +L G +G  + V++ +P V+  NG+  ++   L  +E  +   SA  +K V 
Sbjct: 259 SAYLDGLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVL 311

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            ++V++ +P V+  NG+  ++   L  +E  +   SA  +K
Sbjct: 268 ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLK 308

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
            + G +GIE+ V +SLP ++   GV  ++   LT EE E L+ SA+ +K+V   +
Sbjct: 262 VINGMYGIED-VAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV 315

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I++V +SLP ++   GV  ++   LT EE E L+ SA+ +K
Sbjct: 269 IEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVK 309

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
            L   HGI + + +S+P ++   GV + +N P++ +E+  LK+SA+ +KE     
Sbjct: 264 MLKDFHGISD-ICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQF 317

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I ++ +S+P ++   GV + +N P++ +E+  LK+SA+ +K
Sbjct: 271 ISDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLK 311

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score = 65.6 bits (161), Expect = 5e-13
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           + +L G +G ++ V++ +P V+   G+  I    L ++E E+   SA  +K + 
Sbjct: 258 STYLDGQYGADD-VYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNIL 310

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score = 59.8 bits (146), Expect = 5e-11
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
             +V++ +P V+   G+  I    L ++E E+   SA  +K
Sbjct: 267 ADDVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLK 307

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score = 65.2 bits (160), Expect = 6e-13
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           +++L  + G+++ + +S+P  +  +GV  I+   L +EE+E  +KSA  +K     +
Sbjct: 252 SVYLEDYLGVKD-LCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI 307

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +K++ +S+P  +  +GV  I+   L +EE+E  +KSA  +K
Sbjct: 261 VKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILK 301

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score = 65.2 bits (160), Expect = 6e-13
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           +  L G +  E+ V++ +P V+  NG+ ++V  PL  EE  K   SA+ +K++    
Sbjct: 258 SALLEGEYEEED-VYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEA 313

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score = 59.8 bits (146), Expect = 5e-11
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            ++V++ +P V+  NG+ ++V  PL  EE  K   SA+ +K
Sbjct: 267 EEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLK 307

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score = 65.2 bits (160), Expect = 7e-13
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           ++++ G +G+ + +++  P V+  NG+ +I+  PLT  E E ++KSA  +K+V 
Sbjct: 261 SVYMDGQYGLND-IYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVL 313

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score = 59.8 bits (146), Expect = 5e-11
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           + ++++  P V+  NG+ +I+  PLT  E E ++KSA  +K
Sbjct: 270 LNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLK 310

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 64.8 bits (159), Expect = 9e-13
 Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
             ++ G +G+ + +++  P ++   G+  I+  PL+ +E++K++ SA  +K+V 
Sbjct: 256 GAYMDGQYGLND-IYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVL 308

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 59.4 bits (145), Expect = 7e-11
 Identities = 10/41 (24%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           + ++++  P ++   G+  I+  PL+ +E++K++ SA  +K
Sbjct: 265 LNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLK 305

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           ++ L G  G E+     +P  +  NGV  IV   L   E + +  +A+ + + +  +
Sbjct: 247 SVKLEGEFGHED-TAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYDKI 302

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            ++    +P  +  NGV  IV   L   E + +  +A+ + 
Sbjct: 256 HEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLS 296

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 103 PAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
                   +G    V LSLP V+   GV   ++  LT +E +KL++SA  ++     L
Sbjct: 249 TVSAPTPEYG----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQL 302

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 156 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           V LSLP V+   GV   ++  LT +E +KL++SA  ++
Sbjct: 259 VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLR 296

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
            +   +GI++ VFLSLPCV+ +NG++H  IV   L  +E ++L+KSA  + ++   L
Sbjct: 273 MVKDFYGIKDNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 155 EVFLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAIK 193
            VFLSLPCV+ +NG++H  IV   L  +E ++L+KSA  + 
Sbjct: 283 NVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLW 322

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           +  ++LS P ++  +GV       LT +E EKL +S   I++ F  +
Sbjct: 259 DMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEI 305

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
              ++LS P ++  +GV       LT +E EKL +S   I+
Sbjct: 259 DMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQ 299

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           ++ L G +GIE  V + +P  +  NG   + +  L+ EEIEKL+ SA+ ++E    L
Sbjct: 238 SMILQGEYGIEN-VAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRERLEEL 292

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score = 54.4 bits (132), Expect = 3e-09
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I+ V + +P  +  NG   + +  L+ EEIEKL+ SA+ ++
Sbjct: 247 IENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILR 286

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCV 163
           A+ L G +GI++  F+ +P  +  NGV  I    L Q +++ L+KSA+ + E    L   
Sbjct: 250 AVGLEGQYGIDK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDENCKMLEST 308

Query: 164 MA 165
           + 
Sbjct: 309 IG 310

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I + F+ +P  +  NGV  I    L Q +++ L+KSA+ + 
Sbjct: 259 IDKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVD 299

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCV 163
           A +  G +G+++ +F+ +P  +   GV  ++   L  +E  +LK SA  +      L  +
Sbjct: 249 AAYCDGEYGLDD-LFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDLQRL 307

Query: 164 MADNGV 169
             +  +
Sbjct: 308 RDEGKI 313

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           + ++F+ +P  +   GV  ++   L  +E  +LK SA  + 
Sbjct: 258 LDDLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVH 298

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLP 161
           +++L G +G  + +   +P V+  +G+  I+  PLT++E  K  ++ QA+K++  +LP
Sbjct: 247 SLYLQGEYGYND-IVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVKKLVETLP 303

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
             ++   +P V+  +G+  I+  PLT++E  K  ++ QA+K
Sbjct: 256 YNDIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVK 296

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           A +L G +G+ + ++  +P ++   GV  I+  PL +EE+  L  SA+A++    +L
Sbjct: 251 AAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 306

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           + +++  +P ++   GV  I+  PL +EE+  L  SA+A++
Sbjct: 260 LNDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 300

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           +     H+G++  +++ +P ++  NGV  I+   LT  E + L +S   +  +   L
Sbjct: 258 SAFCSNHYGVKG-IYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVNTISKVL 313

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +K +++ +P ++  NGV  I+   LT  E + L +S   + 
Sbjct: 267 VKGIYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVN 307

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 13/62 (20%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCV 163
           +++  G +G+++ +F+ LP V+   G+  ++   L +EE ++ +KS   +  +  ++  +
Sbjct: 269 SVYCNGEYGLKD-MFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNKAVAAL 327

Query: 164 MA 165
            A
Sbjct: 328 QA 329

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +K++F+ LP V+   G+  ++   L +EE ++ +KS   + 
Sbjct: 278 LKDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVM 318

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
             +L G +G  + ++L +P ++  NG+  I+   L  +E E L +S ++++ V   L
Sbjct: 259 IAYLEGEYGYSD-LYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRNVMKVL 314

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
             +++L +P ++  NG+  I+   L  +E E L +S ++++
Sbjct: 268 YSDLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVR 308

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           A  L G +G+++ +++ +P V+  NGV  I+   L ++E  +  KS  ++  +  + 
Sbjct: 261 AAQLSGQYGVKD-MYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAGLCEAC 316

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +K++++ +P V+  NGV  I+   L ++E  +  KS  ++ 
Sbjct: 270 VKDMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVA 310

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 13/57 (22%), Positives = 30/57 (52%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           + ++ G      +V + +P  +  +G+  +V+  L ++EI   +KSA+ IK+    +
Sbjct: 254 SAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV 310

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I++V + +P  +  +G+  +V+  L ++EI   +KSA+ IK
Sbjct: 264 IRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIK 304

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           + +L G + +   +F+ +P V+  NG+  +V   L+ +E     KS ++I+ +   L
Sbjct: 268 STYLTGQYNVNN-LFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQNLVQDL 323

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +  +F+ +P V+  NG+  +V   L+ +E     KS ++I+
Sbjct: 277 VNNLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQ 317

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score = 53.3 bits (129), Expect = 9e-09
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +  L G +G  + +F   P V+  NGV  ++   L  EE  K  ++    K +
Sbjct: 261 STLLEGQYGHSD-IFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRM 312

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
             ++F   P V+  NGV  ++   L  EE  K  ++    K
Sbjct: 270 HSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETK 310

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           G +G++E++F+ +P  ++ NGV   +   ++ +E E+L+ S  AIK++  + 
Sbjct: 265 GMYGLDEDLFVGVPTEISANGV-RPIEVEISDKEREQLQVSINAIKDLNKAA 315

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +++F+ +P  ++ NGV   +   ++ +E E+L+ S  AIK
Sbjct: 271 EDLFVGVPTEISANGV-RPIEVEISDKEREQLQVSINAIK 309

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 98  QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPL-TQEEIEKLKKSAQAIKEV 156
           +  R PA   +   G E  + +++   +  +GV H     L  + E   LK+S   + ++
Sbjct: 255 EAFRWPAGCYVNVPGFEH-IMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHLAKL 313

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPL-TQEEIEKLKKSAQAIK-IRDFVK 199
            + + +++   +  +GV H     L  + E   LK+S   +  +RD V 
Sbjct: 270 FEHIMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHLAKLRDEVI 318

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 104 AIHLLGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
            I   G+  G+ +++  S P  + D     +   P+     EK+  +A+ + E
Sbjct: 269 GIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 321

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
            I   G +GI E V    P    +     +    +     E++  +   + E
Sbjct: 268 GIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLE 319

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 104 AIHLLGHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE 155
           A+   G +GI E +  S P   A +G   +V    + +   ++++ +AQ + +
Sbjct: 265 AVPSQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFARKRMEITAQELLD 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3tl2_A	315	Malate dehydrogenase; center for structural genomi	99.97
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	99.97
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	99.97
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	99.97
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	99.97
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	99.97
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	99.96
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	99.96
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	99.96
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	99.96
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	99.94
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	99.94
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	99.94
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	99.94
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.94
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	99.94
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	99.94
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	99.94
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	99.94
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	99.94
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	99.94
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	99.94
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	99.94
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.93
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.93
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.92
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.92
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	99.92
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.91
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.91
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	99.9
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.9
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.89
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	99.88
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.88
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.86
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.86
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.75
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.73
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	99.58
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	99.52
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.44
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.82
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.74
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.72
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.7
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.69
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.67
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.62
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.6
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.58
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.53
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.53
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.44
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.38
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.37
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.37
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.36
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.36
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.36
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.36
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.36
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.35
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.35
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.34
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.34
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.34
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.32
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.32
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.31
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.29
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.28
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.25
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.23
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	98.15
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.07
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.01
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.88
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.74
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.64
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.41
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.4
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.29
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.72
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.35
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.11
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	93.74

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=99.97  E-value=3.5e-31  Score=234.93  Aligned_cols=140  Identities=22%  Similarity=0.390  Sum_probs=126.6

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .|+..-+.+||.+|||++||||+|  |.||++||+  ++||+++|+++++|      |||++|||+||++         +
T Consensus       129 Pvd~~t~~~~k~sg~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~v~~~viG~Hg~t~vp~~S~~---------~  195 (315)
T 3tl2_A          129 PVDAMTYSVFKEAGFPKERVIGQS--GVLDTARFR--TFIAQELNLSVKDITGFVLGGHGDDMVPLVRYS---------Y  195 (315)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEECC--HHHHHHHHH--HHHHHHHTCCGGGEECCEEBCSGGGCEECGGGC---------E
T ss_pred             hHHHHHHHHHHhcCCChHHEEeec--cCcHHHHHH--HHHHHHhCcCHHHceeeEecCCCCcceeecccC---------e
Confidence            344555778999999999999999  999999999  99999999999999      9999999999999         8


Q ss_pred             ccCcccccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEee
Q psy17692         81 NCIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLS  120 (211)
Q Consensus        81 v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s  120 (211)
                      ++|+|+.++++                                       +++.+|+++++|++ +++|+||+ +|+|+|
T Consensus       196 v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~~kgst~~a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s  274 (315)
T 3tl2_A          196 AGGIPLETLIPKERLEAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGY-SDLYLG  274 (315)
T ss_dssp             ETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEE
T ss_pred             ECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHcCCCcEEEEEEeccCccCC-CceEEE
Confidence            88888877553                                       45677888999999 79999999 799999


Q ss_pred             eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +|+++|++|+.+++++.|+++|++.|..|++.+++.++.+
T Consensus       275 ~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~  314 (315)
T 3tl2_A          275 VPVILGGNGIEKIIELELLADEKEALDRSVESVRNVMKVL  314 (315)
T ss_dssp             EEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998877653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=99.97  E-value=5.7e-31  Score=235.10  Aligned_cols=139  Identities=26%  Similarity=0.362  Sum_probs=124.3

Q ss_pred             chhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccccc
Q psy17692          9 SSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus         9 ~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      +.--+.+||.+||||+||||+|  |.||++||+  ++||+++|+++++|      ||||+|||+||++         +++
T Consensus       140 di~t~~~~k~sg~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~V~~~ViGeHG~s~vp~~S~~---------~v~  206 (331)
T 4aj2_A          140 DILTYVAWKISGFPKNRVIGSG--CNLDSARFR--YLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGV---------NVA  206 (331)
T ss_dssp             HHHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTSCGGGCBCCEEBCSSTTCEECGGGC---------EET
T ss_pred             HHHHHHHHHHhCCCHHHEEeec--cccHHHHHH--HHHHHHhCCCHHHCEEeEEecCCCceeEeeecC---------eEC
Confidence            3344668999999999999999  999999999  99999999999999      9999999999999         888


Q ss_pred             Ccccccccc--------------------------------------------chhhccCCceeEeE-eecCccccccce
Q psy17692         83 IVPKELYCP--------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEV  117 (211)
Q Consensus        83 g~pv~~~~~--------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV  117 (211)
                      |+|+.++++                                            +++++|+++++|++ +++|+||+.+|+
T Consensus       207 G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~t~~a~a~a~a~~~~ail~d~~~~~~vs~~~~g~ygi~~~v  286 (331)
T 4aj2_A          207 GVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDV  286 (331)
T ss_dssp             TEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTGGGCCSCC
T ss_pred             CEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcCCCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCccCCcCce
Confidence            888754421                                            45788899999998 799999996699


Q ss_pred             EeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        118 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       118 ~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+|+|+++|++|+.+++++.|+++|++.|..|++.++++..++
T Consensus       287 ~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~~~~~~  329 (331)
T 4aj2_A          287 FLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKEL  329 (331)
T ss_dssp             EEEEEEEEETTEEEEEECCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEEEEcCCeeEEEccCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999888876543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=99.97  E-value=4.9e-31  Score=235.05  Aligned_cols=139  Identities=19%  Similarity=0.211  Sum_probs=125.1

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |+.--+.+||.+|||++||||+|  |.||++||+  ++||+++|+++++|      |||++|||+||++         ++
T Consensus       125 vd~~t~~~~k~~g~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~V~~~V~GeHG~t~vp~~S~~---------~v  191 (326)
T 3pqe_A          125 VDILTYATWKFSGLPKERVIGSG--TTLDSARFR--FMLSEYFGAAPQNVCAHIIGEHGDTELPVWSHA---------NV  191 (326)
T ss_dssp             HHHHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTCCGGGEECCEEBSSSTTCEECGGGC---------EE
T ss_pred             HHHHHHHHHHhcCCCHHHEEeec--cccHHHHHH--HHHHHHhCCCHHHceeeeeecCCCceeeeeeee---------eE
Confidence            33444678999999999999999  999999999  99999999999999      9999999999999         88


Q ss_pred             cCccccccc------c-------------------------------------chhhccCCceeEeE-eecCccccccce
Q psy17692         82 CIVPKELYC------P-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEV  117 (211)
Q Consensus        82 ~g~pv~~~~------~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV  117 (211)
                      +|.|+.+++      +                                     +++++|+++++|++ +++|+||+ +|+
T Consensus       192 ~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~v  270 (326)
T 3pqe_A          192 GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLDGQYGA-DDV  270 (326)
T ss_dssp             TTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEECCEEEEESGGGC-EEE
T ss_pred             CCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccccCC-Cce
Confidence            888875552      1                                     45778889999988 79999999 699


Q ss_pred             EeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        118 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       118 ~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+|+|++||++|+.+++++.|+++|++.|..|++.+++.++.+
T Consensus       271 ~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~~~~~~  313 (326)
T 3pqe_A          271 YIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKPH  313 (326)
T ss_dssp             EEECCEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998887754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=99.97  E-value=4.2e-31  Score=234.37  Aligned_cols=145  Identities=16%  Similarity=0.248  Sum_probs=128.5

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |++.-+.+||.+|||++||||+|  |.||++||+  ++||+++|+++++|      |||++|||+||++         ++
T Consensus       121 vd~~t~~~~k~~g~p~~rviG~~--t~LD~~R~~--~~la~~lgv~~~~v~~~ViG~Hg~t~vp~~S~~---------~v  187 (314)
T 3nep_X          121 LDVMTYVAYEASGFPTNRVMGMA--GVLDTGRFR--SFIAEELDVSVRDVQALLMGGHGDTMVPLPRYT---------TV  187 (314)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEECC--HHHHHHHHH--HHHHHHHTCCGGGEEEEEEESSGGGEEEEEEEE---------EE
T ss_pred             hhHHHHHHHHhcCCChHHEEeec--CchHHHHHH--HHHHHHhCcCHHHeEEEEECCCCCcEEeeeecC---------eE
Confidence            44555778999999999999999  999999999  99999999999999      9999999999999         77


Q ss_pred             cCcccccccc--------------------------------------chhhccCCceeEeE-eecCccccccceEeeec
Q psy17692         82 CIVPKELYCP--------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLP  122 (211)
Q Consensus        82 ~g~pv~~~~~--------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P  122 (211)
                      +|+|+.++++                                      +++.+|+++++|++ +++|+||+ +|+|+|+|
T Consensus       188 ~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~sa~~a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P  266 (314)
T 3nep_X          188 GGIPVPQLIDDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILPCAAYCDGEYGL-DDLFIGVP  266 (314)
T ss_dssp             TTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTCCEEEEEEEEEESGGGC-EEEEEEEE
T ss_pred             CcEehhhccCHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeccccCC-CceEEEEE
Confidence            8888766543                                      45677888999998 79999999 79999999


Q ss_pred             eEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccceeecC
Q psy17692        123 CVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMAD  166 (211)
Q Consensus       123 ~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP~vlg~  166 (211)
                      +++|++|+.+++++.|+++|++.|..|++.+++.++.+..++..
T Consensus       267 ~~lg~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~~~~l~~  310 (314)
T 3nep_X          267 VKLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDLQRLRDE  310 (314)
T ss_dssp             EEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998888877666555543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=99.97  E-value=5.5e-31  Score=231.83  Aligned_cols=139  Identities=21%  Similarity=0.239  Sum_probs=121.8

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc----cCCCceeeecccccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV----SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V----eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      .|++.-+.+||.+|||++|+||+|  |+|||+|||  ++|++++++++.+.    ||||+|+|+||++         +++
T Consensus       120 Pvd~~t~i~~k~sg~p~~rvig~g--T~LDs~R~~--~~l~~~~~~~~~~~~V~G~HGdt~vp~~S~~---------~v~  186 (294)
T 2x0j_A          120 PMDVMTYIMWKESGKPRNEVFGMG--NQLDSQRLK--ERLYNAGARNIRRAWIIGEHGDSMFVAKSLA---------DFD  186 (294)
T ss_dssp             SHHHHHHHHHHHSSCCTTSEEECC--HHHHHHHHH--HHHHHTTCEEECCCCEEBCSSTTCEECGGGC---------CEE
T ss_pred             cchhhHHhhHHHcCCChhhEEEee--eEEeHHHHH--HHHhhcccCCcceeEEEecCCCcEEEeeecc---------CCC
Confidence            467777899999999999999999  999999999  99999999987655    9999999999999         555


Q ss_pred             Ccccccccc-----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEE
Q psy17692         83 IVPKELYCP-----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTH  132 (211)
Q Consensus        83 g~pv~~~~~-----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~  132 (211)
                      |.|..+.+.                             +++.+|+++++|++ +++|+||+ +|+|+|+|++||++|+ +
T Consensus       187 g~~~~~~i~~~~~~~g~eIi~~kGst~~a~a~a~~~~~~ail~d~~~v~~~s~~l~g~yG~-~~v~~s~P~~lg~~Gv-e  264 (294)
T 2x0j_A          187 GEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-E  264 (294)
T ss_dssp             SCCCHHHHHHHHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-E
T ss_pred             CchhHHHHHHHHhhhheEEEecCcccchhHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCC-ccEEEEEEEEEeCCEE-E
Confidence            544322111                             67899999999999 79999999 7999999999999998 5


Q ss_pred             EecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        133 IVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       133 Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      ++++.|+++|++.|..|++.+++.++.+
T Consensus       265 i~~l~L~~~E~~~l~~s~~~lk~~i~~l  292 (294)
T 2x0j_A          265 VADIKLSDEEIEKLRNSAKILRERLEEL  292 (294)
T ss_dssp             ECCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999898877643

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=99.97  E-value=5.6e-31  Score=234.74  Aligned_cols=140  Identities=21%  Similarity=0.288  Sum_probs=121.9

Q ss_pred             chhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccccc
Q psy17692          9 SSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus         9 ~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      +.--+.+||.+|||++||||+|  |.||++||+  ++||+++|+++++|      |||++|||+||++         +++
T Consensus       129 di~t~~~~k~~g~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~V~~~ViGeHGdt~vp~~S~a---------~v~  195 (326)
T 3vku_A          129 DILTYATWKLSGFPKNRVVGSG--TSLDTARFR--QSIAKMVNVDARSVHAYIMGEHGDTEFPVWSHA---------NIG  195 (326)
T ss_dssp             HHHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTSCGGGEECCEEBSSSTTCEECGGGC---------EET
T ss_pred             HHHHHHHHHhcCCCHHHeeeec--ccCcHHHHH--HHHHHHhCCCHHHCeEEEEcCCCCeeEEeeecc---------ccC
Confidence            3344678999999999999999  999999999  99999999999999      9999999999999         888


Q ss_pred             Cccccccc------c-------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692         83 IVPKELYC------P-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF  118 (211)
Q Consensus        83 g~pv~~~~------~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~  118 (211)
                      |.|+.+++      .                                     +++.+|+++++|++ +++|+||+ +|+|
T Consensus       196 g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~v~  274 (326)
T 3vku_A          196 GVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGL-NDIY  274 (326)
T ss_dssp             TEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEGGGE-EEEE
T ss_pred             CEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCceEEEEeeccCccCC-CceE
Confidence            88875442      1                                     45778889999997 79999999 7999


Q ss_pred             eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccce
Q psy17692        119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPC  162 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP~  162 (211)
                      +|+|+++|++|+.+++++.|+++|++.|..|++.+++.++.+..
T Consensus       275 ~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~sa~~L~~~~~~~~~  318 (326)
T 3vku_A          275 IGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFA  318 (326)
T ss_dssp             EEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHCC------
T ss_pred             EEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888776633

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=99.96  E-value=5.9e-30  Score=225.07  Aligned_cols=139  Identities=20%  Similarity=0.222  Sum_probs=120.6

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCC-c----cCCCceeeeccccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRT-V----SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~-V----eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      .|+..-+.+||.+|||++||||+|  |.|||+||+  ++|| ++|++|++ +    |||++|+|+||++         ++
T Consensus       120 Pvd~~t~~~~k~~g~p~~rviG~g--t~LD~~R~~--~~la-~l~v~~~~~~~V~G~Hg~t~vp~~s~~---------~v  185 (294)
T 1oju_A          120 PMDVMTYIMWKESGKPRNEVFGMG--NQLDSQRLK--ERLY-NAGARNIRRAWIIGEHGDSMFVAKSLA---------DF  185 (294)
T ss_dssp             SHHHHHHHHHHHSCCCTTSEEECS--HHHHHHHHH--HHHH-HTTCBSCCCCCEEBCSSTTCEECGGGC---------CC
T ss_pred             cchHHHHHHHHhcCCCHHHEeecc--cccHHHHHH--HHHH-HhCCCccCceEEEecCCCceeeecccc---------eE
Confidence            344555778999999999999999  999999999  9999 99999874 3    9999999999999         66


Q ss_pred             cCcc-cccccc----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEE
Q psy17692         82 CIVP-KELYCP----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVT  131 (211)
Q Consensus        82 ~g~p-v~~~~~----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~  131 (211)
                      +|.| ..++..                            +++.+|+++++|++ +++|+||+ +|+|+|+|+++|++|+.
T Consensus       186 ~g~~~~~~~~~~v~~~g~eii~~kG~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~~g~~Gv~  264 (294)
T 1oju_A          186 DGEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGAE  264 (294)
T ss_dssp             BSCCCHHHHHHHHHTTHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEE
T ss_pred             CCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCeEEEEEecccccCCC-CceEEEEEEEEeCCEEE
Confidence            6666 111111                            56888999999999 79999999 69999999999999999


Q ss_pred             EEecCCCCHHHHHHHHhhHHhHHhhhcccc
Q psy17692        132 HIVNQPLTQEEIEKLKKSAQAIKEVFLSLP  161 (211)
Q Consensus       132 ~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP  161 (211)
                       ++++.|+++|++.|..|++.+++.++.++
T Consensus       265 -v~~l~L~~~E~~~l~~s~~~l~~~~~~~~  293 (294)
T 1oju_A          265 -VADIKLSDEEIEKLRNSAKILRERLEELG  293 (294)
T ss_dssp             -ECCCCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -EecCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence             99999999999999999999988876653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=99.96  E-value=3.1e-30  Score=229.71  Aligned_cols=140  Identities=18%  Similarity=0.269  Sum_probs=124.7

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .|+..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      |||++|+|+||++         +
T Consensus       126 Pvd~~t~~~~k~sg~p~~rviG~~--~~LD~~R~~--~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~---------~  192 (324)
T 3gvi_A          126 PLDAMVWALQKFSGLPAHKVVGMA--GVLDSARFR--YFLSEEFNVSVEDVTVFVLGGHGDSMVPLARYS---------T  192 (324)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEECC--HHHHHHHHH--HHHHHHHTCCGGGEECCEEECSGGGEEECGGGC---------E
T ss_pred             CcHHHHHHHHHhcCCCHHHEEeec--CccHHHHHH--HHHHHHhCcCHHHCeEEEEcCCCCceeeehhhC---------e
Confidence            344555678999999999999999  999999999  99999999999999      9999999999999         7


Q ss_pred             ccCccccccc-----c---------------------------------------chhhccCCceeEeE-eecCcccccc
Q psy17692         81 NCIVPKELYC-----P---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEE  115 (211)
Q Consensus        81 v~g~pv~~~~-----~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~  115 (211)
                      ++|+|+.+++     .                                       +++.+|+++++|++ +++|+||+ +
T Consensus       193 v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~gkgsa~~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~  271 (324)
T 3gvi_A          193 VAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGV-K  271 (324)
T ss_dssp             ETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-E
T ss_pred             ECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCcEEEEEEEecCccCC-C
Confidence            7777765542     1                                       45778889999999 79999999 6


Q ss_pred             ceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        116 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       116 dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+|+|+||++|++|+.+++++.|+++|++.|..|++.+++.++.+
T Consensus       272 ~v~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~  316 (324)
T 3gvi_A          272 DMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAGLCEAC  316 (324)
T ss_dssp             EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888877654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=99.96  E-value=2.4e-30  Score=229.97  Aligned_cols=141  Identities=19%  Similarity=0.266  Sum_probs=124.3

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .|+..-+.+||.+|||++||||+|  |.|||+||+  ++||+++|+++++|      |||++|+|+||++         +
T Consensus       124 Pvd~~t~~~~k~sg~p~~rviG~~--~~LD~~R~~--~~la~~l~v~~~~v~~~v~G~HG~t~~p~~s~~---------~  190 (321)
T 3p7m_A          124 PLDIMVNMLQKFSGVPDNKIVGMA--GVLDSARFR--TFLADELNVSVQQVQAYVMGGHGDTMVPLTKMS---------N  190 (321)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEEEC--HHHHHHHHH--HHHHHHHTCCGGGEECCEEECSGGGEEECTTTC---------E
T ss_pred             chHHHHHHHHHhcCCCHHHEEeec--cchHHHHHH--HHHHHHhCcCHHHceEeeecCcCCceeeeeeec---------e
Confidence            344555778999999999999999  999999999  99999999999999      9999999999999         7


Q ss_pred             ccCccccccc-----c---------------------------------------chhhccCCceeEeE-eec-Cccccc
Q psy17692         81 NCIVPKELYC-----P---------------------------------------EIEDREQDRRKPAI-HLL-GHHGIE  114 (211)
Q Consensus        81 v~g~pv~~~~-----~---------------------------------------~~i~~d~~~i~~vs-~l~-G~yGi~  114 (211)
                      ++|+|+.+++     .                                       +++.+|+++++|++ +++ |+||+.
T Consensus       191 v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~g~gsa~~~~a~a~~~~~~ail~~~~~v~~~s~~~~~g~ygi~  270 (321)
T 3p7m_A          191 VAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLD  270 (321)
T ss_dssp             ETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTGGGCS
T ss_pred             ECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhcCCCChHHHHHHHHHHHHHHHHcCCCcEEEEEEEccCcccCCC
Confidence            7777765442     1                                       45778889999999 789 899995


Q ss_pred             cceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccc
Q psy17692        115 EEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLP  161 (211)
Q Consensus       115 ~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP  161 (211)
                      +|+|+|+||++|++|+.++ ++.|+++|++.|..|++.+++.++.+.
T Consensus       271 ~~v~~s~P~~~g~~Gv~~v-~l~L~~~E~~~l~~s~~~l~~~~~~~~  316 (321)
T 3p7m_A          271 EDLFVGVPTEISANGVRPI-EVEISDKEREQLQVSINAIKDLNKAAA  316 (321)
T ss_dssp             SCEEEEEEEEEETTEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEEEcCCEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999 999999999999999988888776553

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=99.96  E-value=3.3e-30  Score=233.52  Aligned_cols=149  Identities=11%  Similarity=0.060  Sum_probs=129.1

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR   79 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~   79 (211)
                      .|++.-+.+||.+|++|+|+||+|  |.|||+|||  ++||+++|++|++|       ||||+|||+||++         
T Consensus       160 PvD~~t~ia~k~sg~~~~rvig~g--T~LDsaR~r--~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a---------  226 (375)
T 7mdh_A          160 PCNTNALICLKNAPDIPAKNFHAL--TRLDENRAK--CQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA---------  226 (375)
T ss_dssp             SHHHHHHHHHHTCTTSCGGGEEEC--CHHHHHHHH--HHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSC---------
T ss_pred             chhHHHHHHHHHcCCCCccEEEee--ehHHHHHHH--HHHHHHhCcChhhcccceEEecCCCceeeeeecc---------
Confidence            344555688999999999999999  999999999  99999999999987       9999999999999         


Q ss_pred             cccCcccccccc-------------------------------------chhh-----ccCCceeEeE-eecC-cccccc
Q psy17692         80 KNCIVPKELYCP-------------------------------------EIED-----REQDRRKPAI-HLLG-HHGIEE  115 (211)
Q Consensus        80 ~v~g~pv~~~~~-------------------------------------~~i~-----~d~~~i~~vs-~l~G-~yGi~~  115 (211)
                      +++|+|+.+++.                                     +++.     +|+++++|++ +++| +||+.+
T Consensus       227 ~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~ts~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~  306 (375)
T 7mdh_A          227 KIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAE  306 (375)
T ss_dssp             EETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCS
T ss_pred             cCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCC
Confidence            889999877653                                     2233     4788999999 6999 799967


Q ss_pred             ceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhcccceeecCCc
Q psy17692        116 EVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNG  168 (211)
Q Consensus       116 dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~svP~vlg~~G  168 (211)
                      |+|+|+||++|++|+.++++ +.|+++|+++|..|++.+++..+.+-.+|+..|
T Consensus       307 dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~  360 (375)
T 7mdh_A          307 DIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGEGN  360 (375)
T ss_dssp             SSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHTSSS
T ss_pred             ceEEEEEEEEcCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999995 999999999999999888777666655666654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=99.94  E-value=1.2e-27  Score=210.32  Aligned_cols=135  Identities=19%  Similarity=0.198  Sum_probs=120.7

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |+..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||.+         ++
T Consensus       122 v~~~~~~~~~~~~~p~~rviG~g--t~Ld~~r~~--~~la~~l~v~~~~v~~~v~G~HG~~~~p~~s~~---------~v  188 (303)
T 1o6z_A          122 VDLLNRHLYEAGDRSREQVIGFG--GRLDSARFR--YVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKV---------SV  188 (303)
T ss_dssp             HHHHHHHHHHHSSSCGGGEEECC--HHHHHHHHH--HHHHHHHTCCGGGEECCEEECSSTTEEECGGGC---------EE
T ss_pred             HHHHHHHHHHHcCCCHHHeeecc--cchhHHHHH--HHHHHHhCcCHHHeEEEEEeCCCCccccCCccc---------cc
Confidence            44445678999999999999999  999999999  99999999999999      9999999999999         66


Q ss_pred             cCcccccccc-------------------------------------chhhccCCceeEeE-eecCccccccceEeeece
Q psy17692         82 CIVPKELYCP-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPC  123 (211)
Q Consensus        82 ~g~pv~~~~~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~  123 (211)
                      +|+|  +|+.                                     +++.+|++++++++ +.+|+||+ +|+|+|+||
T Consensus       189 ~g~p--~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~~P~  265 (303)
T 1o6z_A          189 DGTD--PEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPV  265 (303)
T ss_dssp             TTBC--CCCCHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEE
T ss_pred             CCcC--ccCCHHHHHHHHHHHHHHhHHHHhcCCChHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCccCC-cceEEEEEE
Confidence            7776  4421                                     45788889999988 68999999 899999999


Q ss_pred             EEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        124 VMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       124 vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +||++|+.++++..|+++|++.|..|++.+++.++
T Consensus       266 ~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~  300 (303)
T 1o6z_A          266 SLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYD  300 (303)
T ss_dssp             EEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988887654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=99.94  E-value=5.4e-28  Score=214.34  Aligned_cols=137  Identities=19%  Similarity=0.300  Sum_probs=121.3

Q ss_pred             hhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccC
Q psy17692         10 SRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCI   83 (211)
Q Consensus        10 ~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g   83 (211)
                      ..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++|+|+||++         +++|
T Consensus       126 ~~t~~~~k~s~~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~---------~v~g  192 (318)
T 1ez4_A          126 ILTYATWKFSGFPKERVIGSG--TSLDSSRLR--VALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTA---------TIGT  192 (318)
T ss_dssp             HHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTCCGGGEECCEESSSSSSCEECGGGC---------EETT
T ss_pred             HHHHHHHHHcCCCHHHEEecc--ccchHHHHH--HHHHHHhCcChhHEEEEEecccCCceEEEehhh---------cCCC
Confidence            334678999999999999999  999999999  99999999999999      9999999999999         6677


Q ss_pred             ccccccc------c------------------------------------chhhccCCceeEeE-eecCccccccceEee
Q psy17692         84 VPKELYC------P------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLS  120 (211)
Q Consensus        84 ~pv~~~~------~------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s  120 (211)
                      .|+.+++      +                                    +++.+|++++++++ +.+|+||+ +|+|+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~vs~~~~G~yg~-~~~~~~  271 (318)
T 1ez4_A          193 RPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL-NDIYIG  271 (318)
T ss_dssp             EEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEE
T ss_pred             eeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCCcchHHHHHHHHHHHHHHHhCCCcEEEEEEeecCccCC-CceEEE
Confidence            6664431      0                                    45788889999998 68999999 599999


Q ss_pred             eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +||+||++|+.++++..|+++|++.|..|++.+++..+.+
T Consensus       272 vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  311 (318)
T 1ez4_A          272 TPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLNDG  311 (318)
T ss_dssp             EEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888776544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=99.94  E-value=1.6e-27  Score=210.76  Aligned_cols=139  Identities=18%  Similarity=0.230  Sum_probs=123.8

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .++..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||++         +
T Consensus       125 Pv~~~~~~~~~~s~~p~~rviG~g--t~lD~~r~~--~~la~~l~v~~~~v~~~v~G~HG~~~~p~~s~~---------~  191 (316)
T 1ldn_A          125 PVDILTYATWKFSGLPHERVIGSG--TILDTARFR--FLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQA---------Y  191 (316)
T ss_dssp             SHHHHHHHHHHHHTCCGGGEEECT--THHHHHHHH--HHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEE---------E
T ss_pred             chHHHHHHHHHHhCCCHHHEEecc--cchHHHHHH--HHHHHHhCCCHHHeEEEEecccCCceeeeehhc---------c
Confidence            345555788999999999999999  999999999  99999999999999      9999999999999         7


Q ss_pred             ccCcccccccc-------------------------------------------chhhccCCceeEeE-eecCccccccc
Q psy17692         81 NCIVPKELYCP-------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEE  116 (211)
Q Consensus        81 v~g~pv~~~~~-------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~d  116 (211)
                      ++|.|+.++++                                           +++.+|++++++++ +.+|+||+ +|
T Consensus       192 v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~yg~-~~  270 (316)
T 1ldn_A          192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE-RD  270 (316)
T ss_dssp             ETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESTTSC-EE
T ss_pred             CCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHhCCCcEEEEEEEecCccCC-cc
Confidence            77777765421                                           35777888999998 68999999 89


Q ss_pred             eEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcc
Q psy17692        117 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLS  159 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~s  159 (211)
                      +|+|+||+||++|+.++++..|+++|++.|..|++.+++..+.
T Consensus       271 ~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~  313 (316)
T 1ldn_A          271 VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLAR  313 (316)
T ss_dssp             EEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877653

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=99.94  E-value=9e-28  Score=211.97  Aligned_cols=139  Identities=23%  Similarity=0.338  Sum_probs=123.2

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |+..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++|+|+||++         ++
T Consensus       119 v~~~t~~~~k~~~~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~v~~~v~G~Hg~t~~p~~s~~---------~v  185 (308)
T 2d4a_B          119 VDAMTYVMYKKTGFPRERVIGFS--GILDSARMA--YYISQKLGVSFKSVNAIVLGMHGQKMFPVPRLS---------SV  185 (308)
T ss_dssp             HHHHHHHHHHHHCCCGGGEEECC--HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------EE
T ss_pred             hHHHHHHHHHhcCCChhhEEEec--ccchHHHHH--HHHHHHhCcChhHeEEEEEeccCCceeeeehhc---------cC
Confidence            34444678999999999999999  999999999  99999999999999      9999999999999         66


Q ss_pred             cCcccccccc--------------------------------------chhhccCCceeEeE-eecCccccccceEeeec
Q psy17692         82 CIVPKELYCP--------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLP  122 (211)
Q Consensus        82 ~g~pv~~~~~--------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P  122 (211)
                      +|.|+.+|+.                                      +++.+|++++++++ +.+|+||+ +|+|+|+|
T Consensus       186 ~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~s~~~~~a~a~~~~~~ai~~~~~~v~~vs~~~~G~yg~-~~~~~~vP  264 (308)
T 2d4a_B          186 GGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVP  264 (308)
T ss_dssp             TTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEE
T ss_pred             CCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCCCCccHHHHHHHHHHHHHHHHhCCCcEEEEEEEEcCccCC-CceEEEEE
Confidence            6666644432                                      45788889999998 68999999 89999999


Q ss_pred             eEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        123 CVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       123 ~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+||++|+.++++..|+++|++.|..|++.+++..+.+
T Consensus       265 ~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          265 AVIGKSGIERIIELPLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             EEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             EEEcCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888877655

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.94  E-value=1.4e-27  Score=210.51  Aligned_cols=140  Identities=18%  Similarity=0.342  Sum_probs=123.3

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .++..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++|+|+||++         +
T Consensus       121 Pv~~~t~~~~~~~~~~~~rviG~g--t~LD~~r~~--~~la~~lgv~~~~v~~~v~G~Hg~t~~p~~s~~---------~  187 (309)
T 1ur5_A          121 PLDAMTYLAAEVSGFPKERVIGQA--GVLDAARYR--TFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS---------C  187 (309)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEECC--HHHHHHHHH--HHHHHHHTCCGGGEEECCEECSGGGEECCGGGE---------E
T ss_pred             chHHHHHHHHHHcCCCHHHEEECC--cchHHHHHH--HHHHHHhCCChhheeEEEecCcCCceeeeeecc---------e
Confidence            344555778999999999999999  999999999  99999999999999      9999999999999         6


Q ss_pred             ccCcccccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEee
Q psy17692         81 NCIVPKELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLS  120 (211)
Q Consensus        81 v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s  120 (211)
                      ++|.|+.+|+.                                       +++.+|+++++|++ +.+|+||+ +|+|+|
T Consensus       188 v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~kgs~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~  266 (309)
T 1ur5_A          188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFG  266 (309)
T ss_dssp             ETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEE
T ss_pred             eCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhhccCCCcHHHHHHHHHHHHHHHHcCCCcEEEEEEEecCccCC-cceEEE
Confidence            66666655432                                       35677888999998 68999999 899999


Q ss_pred             eceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        121 LPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       121 ~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +||+||++|+.++++..|+++|++.|..|++.+++..+.+
T Consensus       267 vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  306 (309)
T 1ur5_A          267 VPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL  306 (309)
T ss_dssp             EEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888776543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=99.94  E-value=1.5e-27  Score=211.03  Aligned_cols=138  Identities=23%  Similarity=0.284  Sum_probs=121.6

Q ss_pred             chhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccccc
Q psy17692          9 SSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus         9 ~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      +..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||++         +++
T Consensus       127 ~~~t~~~~k~~~~p~~rviG~g--t~lD~~r~~--~~la~~l~v~~~~v~~~v~G~HG~t~~p~~s~~---------~v~  193 (317)
T 3d0o_A          127 DILAYATWKFSGLPKERVIGSG--TILDSARFR--LLLSEAFDVAPRSVDAQIIGEHGDTELPVWSHA---------NIA  193 (317)
T ss_dssp             HHHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTSCGGGCBCCEEBCSSTTCEECTTTC---------EET
T ss_pred             HHHHHHHHHHhCCCHHHEEecC--ccccHHHHH--HHHHHHhCcChhhEEEEEEecCCCCeeEeeecc---------ccC
Confidence            3344678999999999999999  999999999  99999999999999      9999999999999         666


Q ss_pred             Ccccccccc------------------------------------------chhhccCCceeEeE-eecCccccccceEe
Q psy17692         83 IVPKELYCP------------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFL  119 (211)
Q Consensus        83 g~pv~~~~~------------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~  119 (211)
                      |.|+.++++                                          +++.+|++++++++ +.+|+||+ +|+|+
T Consensus       194 g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~  272 (317)
T 3d0o_A          194 GQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLTVSALLEGEYEE-EDVYI  272 (317)
T ss_dssp             TEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEE
T ss_pred             CEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCCCCchHhHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-CceEE
Confidence            766644320                                          45788889999998 68999999 59999


Q ss_pred             eeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        120 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       120 s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+||+||++|+..+++..|+++|++.|..|++.+++..+.+
T Consensus       273 ~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  313 (317)
T 3d0o_A          273 GVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEA  313 (317)
T ss_dssp             EEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888876644

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=99.94  E-value=3.3e-27  Score=209.05  Aligned_cols=139  Identities=24%  Similarity=0.250  Sum_probs=122.8

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |+..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||++         ++
T Consensus       126 v~~~~~~~~k~s~~p~~rviG~g--t~Ld~~r~~--~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~---------~v  192 (318)
T 1y6j_A          126 VDIITYMIQKWSGLPVGKVIGSG--TVLDSIRFR--YLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCT---------HI  192 (318)
T ss_dssp             HHHHHHHHHHHHTCCTTTEEECT--THHHHHHHH--HHHHTTTTCCTTTEECCEEBCSSSSCEECCTTC---------EE
T ss_pred             HHHHHHHHHHHcCCCHHHEeccC--CchHHHHHH--HHHHHHhCCCHHHeEEEEecccCCcEeeeehhc---------eE
Confidence            34445678999999999999999  999999999  99999999999999      9999999999999         67


Q ss_pred             cCccccccc--------c------------------------------------chhhccCCceeEeE-eecCccccccc
Q psy17692         82 CIVPKELYC--------P------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEE  116 (211)
Q Consensus        82 ~g~pv~~~~--------~------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~d  116 (211)
                      +|.|+.+++        +                                    +++.+|++++++++ +.+|+||+ +|
T Consensus       193 ~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~G~yg~-~~  271 (318)
T 1y6j_A          193 AGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGI-ED  271 (318)
T ss_dssp             TTBCSCCC-----------CCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHTCCCEECCEEEECSBTTB-CS
T ss_pred             CCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-cc
Confidence            777765542        1                                    45778888999998 68999999 89


Q ss_pred             eEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        117 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +|+|+||+||++|+..+++..|+++|++.|..|++.+++..+.+
T Consensus       272 ~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  315 (318)
T 1y6j_A          272 VAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV  315 (318)
T ss_dssp             EEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888776543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=99.94  E-value=2.3e-27  Score=211.06  Aligned_cols=142  Identities=20%  Similarity=0.276  Sum_probs=122.5

Q ss_pred             chhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccccc
Q psy17692          9 SSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus         9 ~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      +..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++|+|+||++         +++
T Consensus       129 ~~~t~~~~k~s~~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~---------~v~  195 (326)
T 2zqz_A          129 DILTYATWKLSGFPKNRVVGSG--TSLDTARFR--QSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHA---------NIG  195 (326)
T ss_dssp             HHHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTCCGGGEECCEEBSSSTTCEECGGGC---------EET
T ss_pred             HHHHHHHHHHcCCCHHHEEEcc--ccchHHHHH--HHHHHHhCCChhheEEEEecccCCceEeehhhc---------eEC
Confidence            3344678999999999999999  999999999  99999999999999      9999999999999         666


Q ss_pred             Cccccccc-------c------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692         83 IVPKELYC-------P------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF  118 (211)
Q Consensus        83 g~pv~~~~-------~------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~  118 (211)
                      |.|+.+++       +                                    +++.+|++++++++ +.+|+||+ +|+|
T Consensus       196 g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kG~t~~~~a~aa~~~~~ai~~~~~~~~~vsv~~~G~yg~-~~~~  274 (326)
T 2zqz_A          196 GVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGL-NDIY  274 (326)
T ss_dssp             TEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEE
T ss_pred             CEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcCCCcHHHHHHHHHHHHHHHHhCCCcEEEEEEeccCccCC-CceE
Confidence            66654321       0                                    45788889999998 68999999 5999


Q ss_pred             eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccceee
Q psy17692        119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVM  164 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP~vl  164 (211)
                      +|+||+||++|+.++++..|+++|++.|..|++.+++..+.+-..+
T Consensus       275 ~svP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~  320 (326)
T 2zqz_A          275 IGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKN  320 (326)
T ss_dssp             EEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999988888876553333

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=99.94  E-value=1.6e-27  Score=213.75  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=116.4

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR   79 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~   79 (211)
                      .|++.-+.+||.+|||++|||| |  |.|||+||+  ++||+++|++|++|       ||||+|+|+||++         
T Consensus       128 Pvd~~t~i~~k~sg~p~~rv~g-~--t~LDs~R~~--~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a---------  193 (343)
T 3fi9_A          128 PADITGLVTLIYSGLKPSQVTT-L--AGLDSTRLQ--SELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTA---------  193 (343)
T ss_dssp             SHHHHHHHHHHHHTCCGGGEEE-E--CCHHHHHHH--HHHHHHHTSCGGGEECCCEEESSGGGEEECGGGC---------
T ss_pred             chHHHHHHHHHHcCCCcceEEE-e--cCcHHHHHH--HHHHHHhCcCHHHcccceEEEcCCCceeeeeecc---------
Confidence            3455667789999999999997 5  899999999  99999999999887       9999999999999         


Q ss_pred             cccCccccccc-----c--------------------------------------chhhccCCceeEeE-eecCcccccc
Q psy17692         80 KNCIVPKELYC-----P--------------------------------------EIEDREQDRRKPAI-HLLGHHGIEE  115 (211)
Q Consensus        80 ~v~g~pv~~~~-----~--------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~  115 (211)
                      +++|+|+.+++     .                                      +++.+|+++++|++ +++|+| + +
T Consensus       194 ~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~ss~~s~A~a~~~~~~ail~d~~~v~~~s~~~~g~~-~-~  271 (343)
T 3fi9_A          194 KVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNVPG-F-E  271 (343)
T ss_dssp             EETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSCCCSCEEEEEEETT-E-E
T ss_pred             eECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccCCCcHHhHHHHHHHHHHHHHhCCCceEEEEEEEeCCC-c-C
Confidence            88888887653     1                                      35678888999988 788764 6 7


Q ss_pred             ceEeeeceEEecceEEEEecCC--CCHHHHHHHHhhHHhHHhhhc
Q psy17692        116 EVFLSLPCVMADNGVTHIVNQP--LTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       116 dV~~s~P~vig~~GV~~Ive~i--LsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+|+|+||+||++|+..+ +..  |+++|++.|..|++.+++..+
T Consensus       272 ~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~~~~  315 (343)
T 3fi9_A          272 HIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAKLRD  315 (343)
T ss_dssp             EEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999976 444  899999999999988877665

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=99.94  E-value=1.8e-27  Score=210.16  Aligned_cols=138  Identities=23%  Similarity=0.240  Sum_probs=121.7

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      |+..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++|+|+||.+         ++
T Consensus       119 v~~~t~~~~k~s~~p~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~v~~~v~G~HG~t~~p~~s~~---------~v  185 (310)
T 2xxj_A          119 VDVMTQVAYALSGLPPGRVVGSG--TILDTARFR--ALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSA---------QV  185 (310)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEECT--THHHHHHHH--HHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEE---------EE
T ss_pred             hHHHHHHHHHHcCCCHHHEEecC--cchhHHHHH--HHHHHHhCcCHHHeEEEEecccCCccccchhhc---------cC
Confidence            34444678999999999999999  999999999  99999999999999      9999999999999         66


Q ss_pred             cCccccccc-------c-------------------------------------chhhccCCceeEeE-eecCccccccc
Q psy17692         82 CIVPKELYC-------P-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEE  116 (211)
Q Consensus        82 ~g~pv~~~~-------~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~d  116 (211)
                      +|.|+.+++       +                                     +++.+|++++++++ +.+|+||+ +|
T Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~~ai~~~~~~~~~vs~~~~G~yg~-~~  264 (310)
T 2xxj_A          186 GGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGV-LE  264 (310)
T ss_dssp             TTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEETTE-EE
T ss_pred             CCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCcHHHHHHHHHHHHHHHHcCCCCEEEEEEEEcCccCC-cc
Confidence            666664431       1                                     45788889999998 68999999 89


Q ss_pred             eEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcc
Q psy17692        117 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLS  159 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~s  159 (211)
                      +|+|+||+||++|+.++++..|+++|++.|..|++.+++..+.
T Consensus       265 ~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~  307 (310)
T 2xxj_A          265 VSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILKEAAFA  307 (310)
T ss_dssp             EEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888876653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=99.94  E-value=7.6e-28  Score=214.90  Aligned_cols=147  Identities=24%  Similarity=0.328  Sum_probs=119.6

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccc-c
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSR-K   80 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~-~   80 (211)
                      |+..-+.+||.+|||++||||+|  |.||++||+  ++||+++|+++++|      ||||+|+|+||+. ....+..+ .
T Consensus       141 vdi~t~~~~k~sg~p~~rViG~g--t~LDs~R~~--~~lA~~lgv~~~~V~~~V~G~Hg~t~vp~~S~~-~~~~~~~~v~  215 (330)
T 3ldh_A          141 GTDKNKQDWKLSGLPMHRIIGSG--CNLDSARFR--YLMGERLGVHSCLVIGWVIGQHGDSVPSVWSGM-WDAKLHKDVV  215 (330)
T ss_dssp             HHHHHHHHHHHHCCCGGGEECCT--THHHHHHHH--HHHHHHHTSCTTTCCEEECSSSSTTCCEEEEEE-EETTEEHHHH
T ss_pred             cHHHHHHHHHHhCCCHHHeeccc--CchhHHHHH--HHHHHHhCCCHHHeEEEEEcCCCCceeeechhh-HHHHHHHHHH
Confidence            44455678999999999999999  999999999  99999999999999      9999999999972 21111111 0


Q ss_pred             ccC-------------------ccccccc------------cchhhccCCceeEeE-eecCccccccceEeeeceEEecc
Q psy17692         81 NCI-------------------VPKELYC------------PEIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADN  128 (211)
Q Consensus        81 v~g-------------------~pv~~~~------------~~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~  128 (211)
                      .+|                   .|++.+.            .+++++|+++++|++ +++|+||+.+|+|+|+||++| +
T Consensus       216 ~~g~eii~~kg~t~~a~a~~~~~~~~~~~~~~~~~~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~  294 (330)
T 3ldh_A          216 DSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN-N  294 (330)
T ss_dssp             HCCCTTSTTCHHHHHHHHHTTHHHHTTSSSCSCTHHHHHHHHHHHHHTCCEEECCBCCCSSSSSCCSCCCCBCCEEEB-T
T ss_pred             HHHHHHHHccCCcceeeeeeccCccchhhhhhhHHHHHHHHHHHHHcCCCceEEEEeecCCccCCCCceEEEEEEEEC-C
Confidence            011                   0111110            067889999999999 799999995599999999999 9


Q ss_pred             eEEE--EecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        129 GVTH--IVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       129 GV~~--Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+.+  ++++.|+++|++.|..|++.+++.++++
T Consensus       295 Gv~~~~iv~~~L~~~E~~~l~~s~~~l~~~~~~~  328 (330)
T 3ldh_A          295 GISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL  328 (330)
T ss_dssp             TBCTTCCCCCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cEEEcceecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999  9999999999999999999998887654

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=99.94  E-value=1.1e-26  Score=204.93  Aligned_cols=140  Identities=16%  Similarity=0.201  Sum_probs=123.3

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      .|+..-+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||++         +
T Consensus       124 Pv~~~t~~~~k~~~~p~~rviG~g--t~LD~~r~~--~~la~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~---------~  190 (313)
T 1hye_A          124 PVDVMTYKALVDSKFERNQVFGLG--THLDSLRFK--VAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSAT---------S  190 (313)
T ss_dssp             SHHHHHHHHHHHHCCCTTSEEECT--THHHHHHHH--HHHHHHHTCCGGGEECCEEECSSTTEEECGGGC---------E
T ss_pred             cHHHHHHHHHHhhCcChhcEEEeC--ccHHHHHHH--HHHHHHhCcCHHHeEEEEeeccCCcccceeecc---------c
Confidence            445555778999999999999999  999999999  99999999999999      9999999999999         6


Q ss_pred             ccCccccccc--c-------------------------------------chhhccCCceeEeE-eecCcc-ccccceEe
Q psy17692         81 NCIVPKELYC--P-------------------------------------EIEDREQDRRKPAI-HLLGHH-GIEEEVFL  119 (211)
Q Consensus        81 v~g~pv~~~~--~-------------------------------------~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~  119 (211)
                      ++|.|+.+++  +                                     +++.+|++++++++ +.+|+| |+ +|+|+
T Consensus       191 v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kgs~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~~g~-~~~~~  269 (313)
T 1hye_A          191 IGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGI-RDVCI  269 (313)
T ss_dssp             ETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC------CCHHHHHHHHHHHHHTTCCEEEEEEEEEESSSSSC-EEEEE
T ss_pred             cCCEEHHHHhcCCHHHHHHHHHHHHhccceeecCCCCcHHHHHHHHHHHHHHHHcCCCeEEEEEEeecceecCc-cceEE
Confidence            6666665542  1                                     45788888999998 689999 99 89999


Q ss_pred             eeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        120 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       120 s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+||+||++|+.++++..|+++|++.|..|++.+++.++.+
T Consensus       270 ~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  310 (313)
T 1hye_A          270 GVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV  310 (313)
T ss_dssp             EEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888776543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=99.94  E-value=4.2e-27  Score=210.13  Aligned_cols=140  Identities=11%  Similarity=0.021  Sum_probs=114.8

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSR   79 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~   79 (211)
                      .|++.-+.+||.+|++|+|+||+|  |.|||+||+  ++||+++|++|++|       ||||+|||+||++.+       
T Consensus       131 Pvd~~t~~~~~~~~~~p~~~ig~~--t~LDs~R~~--~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v-------  199 (333)
T 5mdh_A          131 PANTNCLTASKSAPSIPKENFSCL--TRLDHNRAK--AQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV-------  199 (333)
T ss_dssp             SHHHHHHHHHHTCTTSCGGGEEEC--CHHHHHHHH--HHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEE-------
T ss_pred             chHHHHHHHHHHcCCCCcCEEEEE--EhHHHHHHH--HHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEe-------
Confidence            456666788999976666678999  999999999  99999999999988       999999999999943       


Q ss_pred             cccCcccc--ccc-----------c-----------------------------chhhccC--CceeEeE-eecC-cccc
Q psy17692         80 KNCIVPKE--LYC-----------P-----------------------------EIEDREQ--DRRKPAI-HLLG-HHGI  113 (211)
Q Consensus        80 ~v~g~pv~--~~~-----------~-----------------------------~~i~~d~--~~i~~vs-~l~G-~yGi  113 (211)
                      .++|.|+.  +++           .                             +.+.+|+  ++++|++ +++| +||+
T Consensus       200 ~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi  279 (333)
T 5mdh_A          200 KLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGV  279 (333)
T ss_dssp             ECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSC
T ss_pred             ccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCC
Confidence            13555432  111           0                             2345554  5799999 6899 9999


Q ss_pred             ccceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        114 EEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       114 ~~dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      .+|+|+|+||++ ++|+.++++ +.|+++|++.|..|++.+++..+
T Consensus       280 ~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~l~~sa~~L~~~~~  324 (333)
T 5mdh_A          280 PDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKMDLTAKELAEEKE  324 (333)
T ss_dssp             CSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            669999999999 999999997 99999999999999988776643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.93  E-value=8.4e-27  Score=205.28  Aligned_cols=139  Identities=20%  Similarity=0.291  Sum_probs=120.4

Q ss_pred             hHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcc
Q psy17692         12 KNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVP   85 (211)
Q Consensus        12 ~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~p   85 (211)
                      -+.++|.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||.+         +++|.|
T Consensus       125 ~~~~~~~~~~~~~rviG~g--t~ld~~r~~--~~la~~l~v~~~~v~~~v~G~Hg~~~~p~~s~~---------~v~g~~  191 (310)
T 1guz_A          125 THVAWVRSGLPKERVIGMA--GVLDAARFR--SFIAMELGVSMQDINACVLGGHGDAMVPVVKYT---------TVAGIP  191 (310)
T ss_dssp             HHHHHHHHCSCGGGEEEEC--HHHHHHHHH--HHHHHHHTCCGGGEECCEEECSGGGEEECGGGC---------EETTEE
T ss_pred             HHHHHHhcCCChHHEEECC--CchHHHHHH--HHHHHHhCCCHHHeEEEEEcccCCcEeeeeecc---------cCCCEE
Confidence            3467899999999999999  999999999  99999999999998      9999999999999         555655


Q ss_pred             cccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEeeeceEE
Q psy17692         86 KELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVM  125 (211)
Q Consensus        86 v~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vi  125 (211)
                      +.+++.                                       +++.+|++++++++ +.+|+||+ +|+|+|+||+|
T Consensus       192 ~~~~~~~~~~~~~~~~v~~~g~~ii~~~~kgs~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~~P~~i  270 (310)
T 1guz_A          192 ISDLLPAETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-DKTFVGVPVKL  270 (310)
T ss_dssp             HHHHSCHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEE
T ss_pred             HHHHCCHHHHHHHHHHHHHhHHHHHhhcCCCCcHHHHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-cceEEEEEEEE
Confidence            544321                                       45677888999997 68999999 89999999999


Q ss_pred             ecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcccceee
Q psy17692        126 ADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVM  164 (211)
Q Consensus       126 g~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~svP~vl  164 (211)
                      |++|+.++++..|+++|++.|..|++.+++..+.+...|
T Consensus       271 g~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~~~~  309 (310)
T 1guz_A          271 GRNGVEQIYEINLDQADLDLLQKSAKIVDENCKMLESTI  309 (310)
T ss_dssp             ETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             eCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999988887665544

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.93  E-value=1.2e-26  Score=205.94  Aligned_cols=137  Identities=18%  Similarity=0.240  Sum_probs=120.5

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      ++..-+.+++.+||||+||||+|  |.|||+||+  ++||+++|+++++|      +||++++|+||.+         ++
T Consensus       129 ~~~~t~~~~~~~g~~~~rviG~g--t~ld~~R~~--~~la~~lgv~~~~v~~~v~G~HG~~~~p~~s~~---------~v  195 (322)
T 1t2d_A          129 VDVMVQLLHQHSGVPKNKIIGLG--GVLDTSRLK--YYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYI---------TV  195 (322)
T ss_dssp             HHHHHHHHHHHHCCCGGGEEECC--HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------EE
T ss_pred             hHHHHHHHHHhcCCChHHEEecc--CcccHHHHH--HHHHHHhCCCHHHeEEEEEcCCCCcEEeeHHHc---------eE
Confidence            34445678899999999999999  999999999  99999999999999      9999999999999         66


Q ss_pred             cCccccccc-----c-------------------------------------chhhccCCceeEeE-eecCccccccceE
Q psy17692         82 CIVPKELYC-----P-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVF  118 (211)
Q Consensus        82 ~g~pv~~~~-----~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~  118 (211)
                      +|.|+.+|+     +                                     +++.+|++++++++ +.+|+||+ +|+|
T Consensus       196 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kgs~~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~g~~g~-~~~~  274 (322)
T 1t2d_A          196 GGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGH-SDIF  274 (322)
T ss_dssp             TTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEE
T ss_pred             CcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCccCC-CceE
Confidence            666654431     1                                     45788889999998 68999999 8999


Q ss_pred             eeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        119 LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       119 ~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      +|+||+||++|+.++++..|+++|++.|..|++.+++..+
T Consensus       275 ~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~L~~~~~  314 (322)
T 1t2d_A          275 GGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKA  314 (322)
T ss_dssp             EEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCeeEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988876643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.92  E-value=5.4e-26  Score=202.26  Aligned_cols=139  Identities=17%  Similarity=0.307  Sum_probs=120.3

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKN   81 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v   81 (211)
                      ++..-+.+++.+||||+||||+|  |+|||+||+  ++||+++|+++++|      +||++++|+||.+         ++
T Consensus       135 ~~~~t~~~~~~~~~~~~rviG~g--t~LD~~R~~--~~la~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~---------~v  201 (331)
T 1pzg_A          135 LDCMVKVMCEASGVPTNMICGMA--CMLDSGRFR--RYVADALSVSPRDVQATVIGTHGDCMVPLVRYI---------TV  201 (331)
T ss_dssp             HHHHHHHHHHHHCCCGGGEEECC--HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------EE
T ss_pred             hHHHHHHHHHhcCCChhcEEecc--chHHHHHHH--HHHHHHhCCCHHHceEEEecCCCCCEeeeeecc---------eE
Confidence            44445678899999999999999  999999999  99999999999999      9999999999999         44


Q ss_pred             cCcccccc------------------------------------cc--------chhhccCCceeEeE-eecCccccccc
Q psy17692         82 CIVPKELY------------------------------------CP--------EIEDREQDRRKPAI-HLLGHHGIEEE  116 (211)
Q Consensus        82 ~g~pv~~~------------------------------------~~--------~~i~~d~~~i~~vs-~l~G~yGi~~d  116 (211)
                      +|.|+.++                                    ..        +++.+|++++++++ +.+|+||+ +|
T Consensus       202 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~~kgst~~~~a~a~~~ii~ai~~~~~~~~~~~v~~~G~~g~-~~  280 (331)
T 1pzg_A          202 NGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KD  280 (331)
T ss_dssp             TTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EE
T ss_pred             CCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhhcCCCccchHHHHHHHHHHHHHhCCCcEEEEEEEecCccCC-Cc
Confidence            44444332                                    10        45778888999998 68999999 89


Q ss_pred             eEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        117 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       117 V~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +|+|+||+||++|+..+++..|+++|++.|..|++.+++..+.+
T Consensus       281 ~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  324 (331)
T 1pzg_A          281 MFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNKAV  324 (331)
T ss_dssp             EEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888776543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.92  E-value=7.4e-26  Score=201.18  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=120.7

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      +++..-+.+++.+||||+||||+|  |.|||+||+  ++||+++|+++++|      +||++++|+||.+         +
T Consensus       133 P~~~~t~~~~~~~~~~~~rviG~~--t~Ld~~R~~--~~la~~lgv~~~~v~~~v~G~Hg~t~~p~~s~~---------~  199 (328)
T 2hjr_A          133 PLDAMVYYFKEKSGIPANKVCGMS--GVLDSARFR--CNLSRALGVKPSDVSAIVVGGHGDEMIPLTSSV---------T  199 (328)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEESC--HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------E
T ss_pred             chHHHHHHHHHhcCCChhhEEEeC--cHHHHHHHH--HHHHHHhCCCHHHeeEEEecCCCCceeeeeeec---------e
Confidence            344455778899999999999999  999999999  99999999999999      9999999999998         4


Q ss_pred             ccCcccccc------------------------------------cc--------chhhccCCceeEeE-eecCcccccc
Q psy17692         81 NCIVPKELY------------------------------------CP--------EIEDREQDRRKPAI-HLLGHHGIEE  115 (211)
Q Consensus        81 v~g~pv~~~------------------------------------~~--------~~i~~d~~~i~~vs-~l~G~yGi~~  115 (211)
                      ++|.|+.++                                    ..        +++.+|++++++++ +.+|+||+ +
T Consensus       200 v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~~gs~~~~~a~a~~~i~~ai~~~~~~v~~~~v~~~G~~g~-~  278 (328)
T 2hjr_A          200 IGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNV-N  278 (328)
T ss_dssp             ETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-E
T ss_pred             ECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-C
Confidence            444444332                                    10        45778888999998 68999999 8


Q ss_pred             ceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        116 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       116 dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+|+|+||+||++|+..+++..|+++|++.|..|++.+++..+.+
T Consensus       279 ~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  323 (328)
T 2hjr_A          279 NLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQNLVQDL  323 (328)
T ss_dssp             EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888776543

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=99.92  E-value=6.4e-26  Score=203.49  Aligned_cols=137  Identities=9%  Similarity=0.054  Sum_probs=109.7

Q ss_pred             ceechhhHHHHHH-hCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccc
Q psy17692          6 KTVSSRKNCIVRK-ELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVS   77 (211)
Q Consensus         6 ~~~~~~~~~~~k~-sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il   77 (211)
                      ..|++.-+.+||. +|+|++|+||+|  |.||++||+  ++||+++|++|++|       |||++|+|+||++       
T Consensus       151 NPvd~~~~i~~~~~~g~~~~r~i~~~--t~LDs~R~~--~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a-------  219 (345)
T 4h7p_A          151 NPANTNALILLKSAQGKLNPRHVTAM--TRLDHNRAL--SLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSA-------  219 (345)
T ss_dssp             SSHHHHHHHHHHHTTTCSCGGGEEEC--CHHHHHHHH--HHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTC-------
T ss_pred             CCcchHHHHHHHHccCCCCcceeeec--cchhHHHHH--HHHHHHHCcChhheecceeecCCCCeEEeeeccc-------
Confidence            3456666778874 699999999999  999999999  99999999999998       9999999999999       


Q ss_pred             cccccCcccccccc---------------------------------------chhhccCCceeEeE---ee-cCccccc
Q psy17692         78 SRKNCIVPKELYCP---------------------------------------EIEDREQDRRKPAI---HL-LGHHGIE  114 (211)
Q Consensus        78 ~~~v~g~pv~~~~~---------------------------------------~~i~~d~~~i~~vs---~l-~G~yGi~  114 (211)
                        +++|.|+.+++.                                       +++.++++.+.++|   +. +|+||+.
T Consensus       220 --~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~kg~ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~  297 (345)
T 4h7p_A          220 --VIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVP  297 (345)
T ss_dssp             --EETTEEGGGGCCC------HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCC
T ss_pred             --eECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCC
Confidence              888888876654                                       23566666666666   22 6899997


Q ss_pred             cceEeeeceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhh
Q psy17692        115 EEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEV  156 (211)
Q Consensus       115 ~dV~~s~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~  156 (211)
                      +|+|+|+||++| +|..++++ ..|+|+|+++|..|++.+++-
T Consensus       298 ~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~s~~~L~~E  339 (345)
T 4h7p_A          298 SGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLASTIAELQEE  339 (345)
T ss_dssp             SSCEEEEEEEEE-TTEEEECCSCC-----CGGGHHHHHHHHHH
T ss_pred             CCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            899999999998 57777775 788999999999999777653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.91  E-value=7e-25  Score=193.70  Aligned_cols=135  Identities=20%  Similarity=0.287  Sum_probs=120.8

Q ss_pred             hHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcc
Q psy17692         12 KNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVP   85 (211)
Q Consensus        12 ~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~p   85 (211)
                      -+.+++.+|||++||||+|  |.||++||+  ++||+++|+++++|      +||++++|+||.+         +++|.|
T Consensus       123 ~~~~~~~~~~~~~rviG~~--t~ld~~r~~--~~la~~lgv~~~~v~~~v~G~hg~~~~p~~s~~---------~v~G~~  189 (319)
T 1a5z_A          123 TYFFLKESGMDPRKVFGSG--TVLDTARLR--TLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGA---------MIGGIP  189 (319)
T ss_dssp             HHHHHHHHTCCTTTEEECT--THHHHHHHH--HHHHHHHTCCGGGEECCEEBCSSTTCEECGGGC---------EETTEE
T ss_pred             HHHHHHHhCCChhhEEeeC--ccHHHHHHH--HHHHHHhCcCHHHceEEEEeCCCCCcccchhhc---------eECCEE
Confidence            3567799999999999999  999999999  99999999999999      9999999999999         777777


Q ss_pred             ccccc------c-------------------------------------chhhccCCceeEeE-eecCccccccceEeee
Q psy17692         86 KELYC------P-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSL  121 (211)
Q Consensus        86 v~~~~------~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~  121 (211)
                      +.+|+      +                                     +++.+|++++++++ +.+|+||+ +|+|+|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~v  268 (319)
T 1a5z_A          190 LQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV-KDLCISV  268 (319)
T ss_dssp             HHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEESSBTTB-CSEEEEE
T ss_pred             HHHHhhcccccCHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCccCc-cceEEEE
Confidence            65542      1                                     35788888999999 68999999 8999999


Q ss_pred             ceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        122 PCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       122 P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      ||+||++|+..+++..|+++|++.|..|++.+++.++.+
T Consensus       269 P~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  307 (319)
T 1a5z_A          269 PVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI  307 (319)
T ss_dssp             EEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998888876644

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.91  E-value=5.8e-25  Score=193.84  Aligned_cols=149  Identities=17%  Similarity=0.255  Sum_probs=118.8

Q ss_pred             echhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccc--ccccccc
Q psy17692          8 VSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRP--ERTVSSR   79 (211)
Q Consensus         8 ~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i--~~~il~~   79 (211)
                      ++.--+.++|.+||||+||||+|  |.||++||+  ++||+++|+++++|      +||++|+|+||...-  .+.+...
T Consensus       128 ~~~~t~~~~~~~~~p~~rviG~g--t~Ld~~R~~--~~la~~lgv~~~~v~~~v~G~Hg~s~~p~~s~~~~~~~~~~~~~  203 (303)
T 2i6t_A          128 VEIMTYVTWKLSTFPANRVIGIG--CNLDSQRLQ--YIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQEEVVSHTSQVQ  203 (303)
T ss_dssp             HHHHHHHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHTSCCTTGGGGEEEEBSCSSSCEEEEBCSSCCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHeeCCC--CCchHHHHH--HHHHHHcCCChHHeEEEEecCCCCCccccccccccccHHHHHHH
Confidence            34444678999999999999999  999999999  99999999999999      999999999999721  0111100


Q ss_pred             -------cccCcccccccc--------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecC-CCCHHH
Q psy17692         80 -------KNCIVPKELYCP--------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQ-PLTQEE  142 (211)
Q Consensus        80 -------~v~g~pv~~~~~--------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~-iLsdeE  142 (211)
                             -+.+..-..|.+        +++.+|++++++++ +.+|+||+.+|+|+|+||+||++|+.++++. .|+++|
T Consensus       204 ~~~~g~eii~~kGst~~~~a~a~~~i~~ai~~~~~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e  283 (303)
T 2i6t_A          204 LSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTV  283 (303)
T ss_dssp             HHHHHHTTSSSCCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHH
T ss_pred             HHHHHHHHHHccCchHHhHHHHHHHHHHHHHcCCCcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHH
Confidence                   011111122211        67899999999998 6899999966999999999999999999998 789999


Q ss_pred             HHHHHhhHHhHHhhhccc
Q psy17692        143 IEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       143 ~~iL~~Sa~~l~~~~~sv  160 (211)
                      ++.|..|++.+++.++.+
T Consensus       284 ~~~l~~s~~~l~~~~~~~  301 (303)
T 2i6t_A          284 TEKLQSSASSIHSLQQQL  301 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999998888776543

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=99.90  E-value=5.5e-24  Score=188.50  Aligned_cols=143  Identities=14%  Similarity=0.094  Sum_probs=110.5

Q ss_pred             echhhHH---HHHHhCC-CCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cC-CCceeeeccccc---cc
Q psy17692          8 VSSRKNC---IVRKELY-RPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SS-GKSCIVRKELYR---PE   73 (211)
Q Consensus         8 ~~~~~~~---~~k~sg~-p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eH-Gds~vp~~S~~~---i~   73 (211)
                      |++.-+.   +||.+|+ |++||||+   |.||++||+  ++||+++|+++++|      || |++|+|+||++.   +.
T Consensus       121 vd~~t~~a~~~~k~sg~~p~~rv~G~---~~LD~~R~~--~~la~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~~g~~~~  195 (312)
T 3hhp_A          121 VNTTVAIAAEVLKKAGVYDKNKLFGV---TTLDIIRSN--TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFT  195 (312)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTSEEEC---CHHHHHHHH--HHHHHHHTCCGGGCCCCEEECSSGGGEEECGGGCTTCCCC
T ss_pred             chhHHHHHHHHHHHcCCCCcceEEEE---echhHHHHH--HHHHHHhCcChhHcceeEEeccCCCceeeecccCCCCCCC
Confidence            3444455   7999998 99999999   599999999  99999999999999      99 999999999871   10


Q ss_pred             cc----cccc-cccCc---------ccccccc--------chh---hccCCceeEeEeecCccccccceEeeeceEEecc
Q psy17692         74 RT----VSSR-KNCIV---------PKELYCP--------EIE---DREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADN  128 (211)
Q Consensus        74 ~~----il~~-~v~g~---------pv~~~~~--------~~i---~~d~~~i~~vs~l~G~yGi~~dV~~s~P~vig~~  128 (211)
                      ..    +..+ ..+|.         --+.|..        +++   .+|+++++|+++++|+ |. .++|+|+|+++|++
T Consensus       196 ~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai~~~l~~~~~v~~~s~~~g~-g~-~~v~~s~P~~~g~~  273 (312)
T 3hhp_A          196 EQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGD-GQ-YARFFSQPLLLGKN  273 (312)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECC-CS-SCSEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHHHHHcCCCCceEEEEEecCC-CC-cceEEEeEEEEeCC
Confidence            00    0000 00110         0111111        345   6788899999988877 55 68899999999999


Q ss_pred             eEEEEecC-CCCHHHHHHHHhhHHhHHhhh
Q psy17692        129 GVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       129 GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      |+.++++. .|+++|++.|..|++.+++.+
T Consensus       274 Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i  303 (312)
T 3hhp_A          274 GVEERKSIGTLSAFEQNALEGMLDTLKKDI  303 (312)
T ss_dssp             EEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999 999999999999998877654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.90  E-value=5.2e-24  Score=187.11  Aligned_cols=152  Identities=20%  Similarity=0.235  Sum_probs=101.1

Q ss_pred             HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCccc
Q psy17692         13 NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPK   86 (211)
Q Consensus        13 ~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv   86 (211)
                      +.+++.+  |++||||+|  |.||++||+  +++|+++|+++++|      +||++|+|+||++         +++|.|+
T Consensus       124 ~~~~~~~--~~~rviG~g--t~Ld~~r~~--~~la~~l~v~~~~v~~~v~G~Hg~~~~p~~s~~---------~v~g~~~  188 (304)
T 2v6b_A          124 DLATQLA--PGQPVIGSG--TVLDSARFR--HLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSA---------MVAGMPV  188 (304)
T ss_dssp             HHHHHHS--CSSCEEECT--THHHHHHHH--HHHHHHHTSCGGGEECCEEESSSTTEEECGGGC---------EETTEEH
T ss_pred             HHHHHhC--ChhcEEeCC--cCchHHHHH--HHHHHHhCcCHHHceEEEecCCCCceeeehhHc---------cCCCEEH
Confidence            4467777  999999999  999999999  99999999999999      9999999999999         8888887


Q ss_pred             cccccc------------hhhccCCceeEeEeecC--ccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhH--
Q psy17692         87 ELYCPE------------IEDREQDRRKPAIHLLG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA--  150 (211)
Q Consensus        87 ~~~~~~------------~i~~d~~~i~~vs~l~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa--  150 (211)
                      .+++++            .+.+-+++.+.+...+|  .|+++             .++.++++++++|+ ++.+++|+  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t~~~~a-------------~a~~~~~~ai~~~~-~~~~~~~~~~  254 (304)
T 2v6b_A          189 ADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIG-------------AALARITEAVLRDR-RAVLTVSAPT  254 (304)
T ss_dssp             HHHHHHHTCCCSHHHHHHHHHHHTC-----------CCHHHH-------------HHHHHHHHHHHTTC-CEEEEEEEEE
T ss_pred             HHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCcHHHHH-------------HHHHHHHHHHHhCC-CcEEEEEEEE
Confidence            665210            01111123444443444  34554             55566666666664 56666665  


Q ss_pred             HhHHhhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        151 QAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       151 ~~l~~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ++ |+.+-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       255 ~g-yg~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  297 (304)
T 2v6b_A          255 PE-YGVSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRG  297 (304)
T ss_dssp             TT-TTEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_pred             CC-cCcEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            55 55555666666666666666666666666666666666654

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.89  E-value=3.5e-24  Score=190.09  Aligned_cols=135  Identities=10%  Similarity=0.056  Sum_probs=115.3

Q ss_pred             hhHHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeecccccccccccccccc
Q psy17692         11 RKNCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKNC   82 (211)
Q Consensus        11 ~~~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v~   82 (211)
                      .-+.+++.+ |||++||+|.   |.||++||+  +++|+++|+++++|       +||++++|+||++         +++
T Consensus       139 ~t~~~~~~~~~~p~~~v~g~---t~Ld~~r~~--~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~---------~v~  204 (329)
T 1b8p_A          139 NAYIAMKSAPSLPAKNFTAM---LRLDHNRAL--SQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYA---------QID  204 (329)
T ss_dssp             HHHHHHHTCTTSCGGGEEEC---CHHHHHHHH--HHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSC---------EET
T ss_pred             HHHHHHHHcCCCCHHHEEEe---ecHHHHHHH--HHHHHHhCcCHHHceEEEEEeccCCcEeeehHHC---------eEC
Confidence            334578888 9999999554   999999999  99999999999987       8999999999999         666


Q ss_pred             Ccccccccc----------------------------------------chhhcc-CCceeEeE-eecCccccccceEee
Q psy17692         83 IVPKELYCP----------------------------------------EIEDRE-QDRRKPAI-HLLGHHGIEEEVFLS  120 (211)
Q Consensus        83 g~pv~~~~~----------------------------------------~~i~~d-~~~i~~vs-~l~G~yGi~~dV~~s  120 (211)
                      |.|+.++++                                        +++.++ +++++|++ +++|+||+.+|+|+|
T Consensus       205 g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kg~~~~~~~a~a~~~~~~ai~~~~~~~~~~~s~~~~g~yg~~~~~~~s  284 (329)
T 1b8p_A          205 GASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFG  284 (329)
T ss_dssp             TEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEE
T ss_pred             CeeHHHHhccchhhHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHhcCCCCcEEEEEEEecCccCCCCCeEEE
Confidence            666533311                                        345667 78899998 688999997799999


Q ss_pred             eceEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        121 LPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       121 ~P~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +||+| ++|+.++++ +.|+++|++.|..|++.+++..+.+
T Consensus       285 ~P~~i-~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~  324 (329)
T 1b8p_A          285 FPVTT-ENGEYKIVQGLSIDAFSQERINVTLNELLEEQNGV  324 (329)
T ss_dssp             EEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEE-cCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 999999998 9999999999999998888776644

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=99.88  E-value=4.8e-23  Score=182.04  Aligned_cols=148  Identities=9%  Similarity=0.079  Sum_probs=114.9

Q ss_pred             CCceechhhHH----------HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cC-CCceeee
Q psy17692          4 SGKTVSSRKNC----------IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SS-GKSCIVR   66 (211)
Q Consensus         4 ~~~~~~~~~~~----------~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eH-Gds~vp~   66 (211)
                      +++.+..+|++          +++.+|||++||||+   |.||++||+  ++||+++|++|++|      || |++++|+
T Consensus       110 ~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~---t~Ld~~r~~--~~la~~l~v~~~~v~~~v~G~H~G~~~~p~  184 (314)
T 1mld_A          110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV---TTLDIVRAN--AFVAELKGLDPARVSVPVIGGHAGKTIIPL  184 (314)
T ss_dssp             TSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEEC---CHHHHHHHH--HHHHHHTTCCGGGCBCCEEECSSGGGEEEC
T ss_pred             CeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEe---ecccHHHHH--HHHHHHhCcChHhEEEEEccCCCCCcEeee
Confidence            35555555543          557789999999999   899999999  99999999999998      99 8999999


Q ss_pred             ccccccccccccc-------cc--c---------Ccccccccc--------chhhccC---CceeEeEeecCccccccce
Q psy17692         67 KELYRPERTVSSR-------KN--C---------IVPKELYCP--------EIEDREQ---DRRKPAIHLLGHHGIEEEV  117 (211)
Q Consensus        67 ~S~~~i~~~il~~-------~v--~---------g~pv~~~~~--------~~i~~d~---~~i~~vs~l~G~yGi~~dV  117 (211)
                      ||++.....+..+       ++  +         |..-..|..        +++.+|+   ++++++++++|+| . +|+
T Consensus       185 ~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~~~~~g~y-~-~~~  262 (314)
T 1mld_A          185 ISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE-T-DCP  262 (314)
T ss_dssp             GGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCS-S-SSS
T ss_pred             cccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEEEEeCCcc-C-Cce
Confidence            9998521111000       00  0         111111111        5677774   4799998899999 5 899


Q ss_pred             EeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhhc
Q psy17692        118 FLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       118 ~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+|+||+||++|+.+++++ .|+++|++.|..|++.+++..+
T Consensus       263 ~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~  304 (314)
T 1mld_A          263 YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK  304 (314)
T ss_dssp             EEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 9999999999999988877654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.88  E-value=5.5e-23  Score=180.94  Aligned_cols=139  Identities=15%  Similarity=0.232  Sum_probs=118.1

Q ss_pred             eechhhHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccccc
Q psy17692          7 TVSSRKNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRK   80 (211)
Q Consensus         7 ~~~~~~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~   80 (211)
                      +++..-+.+++.+|+||+||||++  |.||++|++  +++|+++|+++++|      +||++++|.||.+         +
T Consensus       123 p~~~~~~~~~~~~~~~~~rviG~~--t~ld~~r~~--~~la~~lg~~~~~v~~~v~g~Hg~~~~~~~~~a---------~  189 (317)
T 2ewd_A          123 PLDVMVSHFQKVSGLPHNKVCGMA--GVLDSSRFR--TFIAQHFGVNASDVSANVIGGHGDGMVPATSSV---------S  189 (317)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEESC--HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------E
T ss_pred             hHHHHHHHHHHhhCCCHHHEEecc--CcHHHHHHH--HHHHHHhCcChhhceEEEEecCCCceeEEeecc---------c
Confidence            334445678899999999999999  999999999  99999999999998      9999999999998         3


Q ss_pred             ccCcccccc------------------------------------cc--------chhhccCCceeEeE-eecCcccccc
Q psy17692         81 NCIVPKELY------------------------------------CP--------EIEDREQDRRKPAI-HLLGHHGIEE  115 (211)
Q Consensus        81 v~g~pv~~~------------------------------------~~--------~~i~~d~~~i~~vs-~l~G~yGi~~  115 (211)
                      ++|.|+..+                                    ..        +++.+|+++++|++ +.+|+||+ +
T Consensus       190 v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~g~g~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~G~~g~-~  268 (317)
T 2ewd_A          190 VGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGV-K  268 (317)
T ss_dssp             ETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEESSSTTC-S
T ss_pred             cCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhhcCCchHHHHHHHHHHHHHHHHcCCCeEEEEEEEecCccCC-c
Confidence            333333221                                    10        45677888999998 68999999 8


Q ss_pred             ceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhcc
Q psy17692        116 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLS  159 (211)
Q Consensus       116 dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~s  159 (211)
                      |+|+|+||+||++|+..+++..|+++|++.|..|++.+++.++.
T Consensus       269 ~~~~~~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~  312 (317)
T 2ewd_A          269 GIYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVNTISKV  312 (317)
T ss_dssp             SEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeEEEEcCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888776653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.86  E-value=4.6e-22  Score=174.34  Aligned_cols=127  Identities=18%  Similarity=0.212  Sum_probs=93.8

Q ss_pred             HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCccc
Q psy17692         13 NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPK   86 (211)
Q Consensus        13 ~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv   86 (211)
                      +.+++.++||++||||+|  |.||++||+  +++|+++++++++|      +||++++|+||.+         .++|.|+
T Consensus       130 ~~~~~~~~~~~~rvig~g--t~ld~~r~~--~~~a~~l~~~~~~v~~~v~G~hg~~~~~~~s~~---------~v~g~~~  196 (309)
T 1hyh_A          130 ALFQHVTGFPAHKVIGTG--TLLDTARMQ--RAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTV---------RVMGQPI  196 (309)
T ss_dssp             HHHHHHHCCCGGGEEECT--THHHHHHHH--HHHHHHHTCCGGGCBCCEEBCTTTTCEECTTTC---------EETTEEG
T ss_pred             HHHHHhcCCCHHHEeecC--ccchHHHHH--HHHHHHhCCChhheEEEEEeCCCCcEeeccccc---------eECCEEH
Confidence            567888999999999999  999999999  99999999999988      9999999999999         7888888


Q ss_pred             ccccc---------------------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEe
Q psy17692         87 ELYCP---------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMA  126 (211)
Q Consensus        87 ~~~~~---------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig  126 (211)
                      .+|++                                       +++.+|++++++++ +.+|     +|+|+|+||+||
T Consensus       197 ~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g-----~~~~~~vP~~i~  271 (309)
T 1hyh_A          197 VTLADAGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDD-----MGMYLSYPAIIG  271 (309)
T ss_dssp             GGC-----CCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTT-----TCSEEEEEEEEE
T ss_pred             HHhccCCHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHHHHHHHHcCCCcEEEEEEEECC-----CCeEEEEEEEEe
Confidence            77632                                       23455555556655 3444     355666666666


Q ss_pred             cceEEEEecCCCCHHHHHHHHhhHHhHHhhh
Q psy17692        127 DNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus       127 ~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      ++|+..+++..|+++|++.|..|++.+++.+
T Consensus       272 ~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~  302 (309)
T 1hyh_A          272 RDGVLAETTLDLTTDEQEKLLQSRDYIQQRF  302 (309)
T ss_dssp             TTEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6666666656666666666666665554443

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.86  E-value=7.6e-22  Score=175.06  Aligned_cols=137  Identities=14%  Similarity=0.147  Sum_probs=111.9

Q ss_pred             HHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cC-CCceeeeccccccccccccc-------c
Q psy17692         15 IVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SS-GKSCIVRKELYRPERTVSSR-------K   80 (211)
Q Consensus        15 ~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eH-Gds~vp~~S~~~i~~~il~~-------~   80 (211)
                      +||.+|||++||||+   |.||++||+  ++||+++|++|++|      +| |++++|+||.+.+...+..+       .
T Consensus       139 ~~~~~~~p~~rviG~---~~Ld~~r~~--~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~~~~~~~~~~~~~~  213 (326)
T 1smk_A          139 FKKAGTYDPKRLLGV---TMLDVVRAN--TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR  213 (326)
T ss_dssp             HHHHTCCCTTSEEEC---CHHHHHHHH--HHHHHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHH
T ss_pred             HHHccCCCcccEEEE---eehHHHHHH--HHHHHHhCcChhheEEEEecccCCceEEEecccCeecCcCCHHHHHHHHHH
Confidence            468999999999999   899999999  99999999999998      99 99999999998653211000       0


Q ss_pred             --cc---------Ccccccccc--------chh---hccCCceeEeEeecCccccccceEeeeceEEecceEEEEec-CC
Q psy17692         81 --NC---------IVPKELYCP--------EIE---DREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVN-QP  137 (211)
Q Consensus        81 --v~---------g~pv~~~~~--------~~i---~~d~~~i~~vs~l~G~yGi~~dV~~s~P~vig~~GV~~Ive-~i  137 (211)
                        .+         |..-..|.+        ++|   .+|+++++++++.+|+|+  +|+|+|+||+||++|+.++++ ..
T Consensus       214 v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~ai~~~~~~~~~v~~~~~~~g~~~--~~~~~~vP~~ig~~Gv~~i~~~~~  291 (326)
T 1smk_A          214 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVT--ELPFFASKVRLGRNGIEEVYSLGP  291 (326)
T ss_dssp             HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCSS--SSSEEEEEEEEETTEEEEECCCCC
T ss_pred             HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccccC--CceEEEEEEEEeCCeeEEEcCCCC
Confidence              00         111222321        567   889999999998888865  689999999999999999999 99


Q ss_pred             CCHHHHHHHHhhHHhHHhhhc
Q psy17692        138 LTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       138 LsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+++|++.|..|++.+++.++
T Consensus       292 L~~~e~~~l~~s~~~l~~~~~  312 (326)
T 1smk_A          292 LNEYERIGLEKAKKELAGSIE  312 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988877654

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.75  E-value=2.1e-18  Score=152.02  Aligned_cols=131  Identities=9%  Similarity=0.055  Sum_probs=112.4

Q ss_pred             HHHHHHh-CCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccccCc
Q psy17692         13 NCIVRKE-LYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKNCIV   84 (211)
Q Consensus        13 ~~~~k~s-g~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v~g~   84 (211)
                      +.+++.+ ++||+++.|.   |.||+.|++  +++++++|+++..+       +||++++|.|+.+         .++|.
T Consensus       138 ~~~~~~~~~~~p~~~yg~---tkl~~er~~--~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~---------~~~g~  203 (327)
T 1y7t_A          138 LIAYKNAPGLNPRNFTAM---TRLDHNRAK--AQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHA---------EVDGR  203 (327)
T ss_dssp             HHHHHTCTTSCGGGEEEC---CHHHHHHHH--HHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSC---------EETTE
T ss_pred             HHHHHHcCCCChhheecc---chHHHHHHH--HHHHHHhCcChhheeeeEEEcCCCCeEEEEeeee---------eeCCe
Confidence            4456777 8999999665   899999999  99999999998877       9999999999999         56666


Q ss_pred             ccccccc---------------------------------------chhhcc--CCceeEeE-eecCccccccceEeeec
Q psy17692         85 PKELYCP---------------------------------------EIEDRE--QDRRKPAI-HLLGHHGIEEEVFLSLP  122 (211)
Q Consensus        85 pv~~~~~---------------------------------------~~i~~d--~~~i~~vs-~l~G~yGi~~dV~~s~P  122 (211)
                      |+..+++                                       +++.+|  +++++|++ +++|+||+.+|+|+|+|
T Consensus       204 ~l~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P  283 (327)
T 1y7t_A          204 PALELVDMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFP  283 (327)
T ss_dssp             EGGGTSCHHHHHHTHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEE
T ss_pred             eHHHhccchhHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEE
Confidence            6554421                                       457788  58899999 68999999779999999


Q ss_pred             eEEecceEEEEec-CCCCHHHHHHHHhhHHhHHhhhc
Q psy17692        123 CVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       123 ~vig~~GV~~Ive-~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+| ++|+.++++ +.|+++|++.|..|++.+++..+
T Consensus       284 ~~i-~~G~~~i~~~~~l~~~e~~~l~~s~~~l~~~~~  319 (327)
T 1y7t_A          284 VTA-KDGAYRVVEGLEINEFARKRMEITAQELLDEME  319 (327)
T ss_dssp             EEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEE-cCCeEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999 999999998 99999999999999988877665

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.73  E-value=1.1e-17  Score=145.85  Aligned_cols=135  Identities=21%  Similarity=0.306  Sum_probs=113.4

Q ss_pred             hHHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcc
Q psy17692         12 KNCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVP   85 (211)
Q Consensus        12 ~~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~p   85 (211)
                      .+.+++.++||++||||.|  |.+|++|++  .++++++++++.++      +||++++|.|+.+         .+++.|
T Consensus       131 ~~~~~~~~~~~~~~vig~~--~~l~~~r~~--~~~a~~~~v~~~~v~~~~~G~~g~~~~~~w~k~---------~in~~~  197 (319)
T 1lld_A          131 THVAQKLTGLPENQIFGSG--TNLDSARLR--FLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESA---------TIGGVP  197 (319)
T ss_dssp             HHHHHHHHTCCTTSEEECT--THHHHHHHH--HHHHHHHTCCGGGEECCEEBSSSTTCEECTTSC---------EETTEE
T ss_pred             HHHHHHhcCCCHHHEeecc--ccHhHHHHH--HHHHHHhCCCHHHeEEEEEeCCCCceeeeeecc---------eECCcc
Confidence            3556777899999999999  999999999  99999999999887      8999999999998         333333


Q ss_pred             ccccc--------c-------------------------------------chhhccCCceeEeE-eecCccccccceEe
Q psy17692         86 KELYC--------P-------------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFL  119 (211)
Q Consensus        86 v~~~~--------~-------------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~  119 (211)
                      +..+.        .                                     .++.++++..++++ +++|+|+. .++++
T Consensus       198 l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~G~~~~~~a~~~~sm~~di~~~~~~ei~~s~~~~G~~~~-~~~~~  276 (319)
T 1lld_A          198 MSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGI-SDICM  276 (319)
T ss_dssp             GGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECSSBTTB-CSSEE
T ss_pred             HHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCCCCchHHHHHHHHHHHHHHHcCCCcEEEEEEEecCcCCc-cceEE
Confidence            33221        0                                     23555667788887 78999998 79999


Q ss_pred             eeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692        120 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       120 s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+|+.++++|+..+++..|+++|++.|..|++.+++.++.+
T Consensus       277 gvp~~~~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  317 (319)
T 1lld_A          277 SVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQF  317 (319)
T ss_dssp             EEEEEEETTEEECCSCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998888776543

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=99.58  E-value=2.2e-15  Score=138.05  Aligned_cols=144  Identities=10%  Similarity=0.099  Sum_probs=107.6

Q ss_pred             CCceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-----------------cCC
Q psy17692          4 SGKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-----------------SSG   60 (211)
Q Consensus         4 ~~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-----------------eHG   60 (211)
                      ++-.++.+|+      +++|.+  |++||||++  |.||  ||+  ++||+.+|+++++|                 +||
T Consensus       134 ~A~lin~TNPvdi~t~a~~k~~--p~~rviG~c--~~~~--r~~--~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG  205 (417)
T 1up7_A          134 NATIVNFTNPSGHITEFVRNYL--EYEKFIGLC--NVPI--NFI--REIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKG  205 (417)
T ss_dssp             CCEEEECSSSHHHHHHHHHHTT--CCSSEEECC--SHHH--HHH--HHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETT
T ss_pred             CEEEEEeCChHHHHHHHHHHhC--CCCCEEEeC--CCHH--HHH--HHHHHHhCCCHHHCeEEEEeecceeeEEEeecCC
Confidence            3445666664      456766  888999999  9996  999  99999999999999                 599


Q ss_pred             Cceeeecccc---cccc----ccc--------------------cc----cc--------------c----------Ccc
Q psy17692         61 KSCIVRKELY---RPER----TVS--------------------SR----KN--------------C----------IVP   85 (211)
Q Consensus        61 ds~vp~~S~~---~i~~----~il--------------------~~----~v--------------~----------g~p   85 (211)
                      ++++|.||..   .+..    .+.                    .+    .+              .          ..|
T Consensus       206 ~d~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~  285 (417)
T 1up7_A          206 EDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIP  285 (417)
T ss_dssp             EECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             cEehhhHHHHHHHhhCCCcCCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999985   2211    000                    00    00              0          000


Q ss_pred             c--c-----cccc------chhhccCCceeEeE-eecCcc-ccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhH
Q psy17692         86 K--E-----LYCP------EIEDREQDRRKPAI-HLLGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA  150 (211)
Q Consensus        86 v--~-----~~~~------~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa  150 (211)
                      .  .     .|..      ++|.+|++++++++ +.+|+| |+.+|+++++||+||++|+..++...|+++|+..|..++
T Consensus       286 ~~l~~kg~t~~~~~a~~ii~AI~~d~~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~~L~~~e~~~l~~~~  365 (417)
T 1up7_A          286 EELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVK  365 (417)
T ss_dssp             GGGGGSTTTTHHHHHHHHHHHHHSSSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHH
T ss_pred             hhhhhcCCcHHHHHHHHHHHHHHcCCCeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecCCCCHHHHHHHHHHH
Confidence            0  0     0011      56888999999999 578999 787799999999999999999999999999999999987


Q ss_pred             HhHHh
Q psy17692        151 QAIKE  155 (211)
Q Consensus       151 ~~l~~  155 (211)
                      ..++.
T Consensus       366 ~~e~l  370 (417)
T 1up7_A          366 MYERL  370 (417)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=99.52  E-value=9.3e-15  Score=135.05  Aligned_cols=138  Identities=14%  Similarity=0.115  Sum_probs=104.2

Q ss_pred             Cceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc-----------------cCCC
Q psy17692          5 GKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV-----------------SSGK   61 (211)
Q Consensus         5 ~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V-----------------eHGd   61 (211)
                      +-.++.+|      ++++|.+  |++||||++  |.++  ||+  ++||+.+|+++++|                 +||+
T Consensus       146 a~ii~~tNPvdivT~a~~k~~--p~~rViG~c--~~~~--r~~--~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~  217 (450)
T 1s6y_A          146 AWLINFTNPAGMVTEAVLRYT--KQEKVVGLC--NVPI--GMR--MGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV  217 (450)
T ss_dssp             CEEEECSSSHHHHHHHHHHHC--CCCCEEECC--SHHH--HHH--HHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE
T ss_pred             eEEEEeCCcHHHHHHHHHHhC--CCCCEEEeC--CcHH--HHH--HHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc
Confidence            34555565      4567776  888999999  9985  999  99999999999999                 4999


Q ss_pred             ceeeeccccccc----c-------------ccc---------------c-c-----------------------------
Q psy17692         62 SCIVRKELYRPE----R-------------TVS---------------S-R-----------------------------   79 (211)
Q Consensus        62 s~vp~~S~~~i~----~-------------~il---------------~-~-----------------------------   79 (211)
                      +++|.|+...+.    .             ..+               . +                             
T Consensus       218 d~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e  297 (450)
T 1s6y_A          218 EVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFE  297 (450)
T ss_dssp             ECHHHHHHHHSCC------------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             CchHhHHHHHhhhccccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence            999999874221    0             000               0 0                             


Q ss_pred             cc-----cCcccc-------cccc------chhhccCCceeEeE-eecCcc-ccccceEeeeceEEecceEEEEecCCCC
Q psy17692         80 KN-----CIVPKE-------LYCP------EIEDREQDRRKPAI-HLLGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLT  139 (211)
Q Consensus        80 ~v-----~g~pv~-------~~~~------~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~s~P~vig~~GV~~Ive~iLs  139 (211)
                      -+     .+.|..       .|..      ++|.+|++++++++ ..+|+| |+.+|+++++||+||++|+..++...|+
T Consensus       298 i~~~~~~~~k~~~~~~~~~~~~~~~a~~ii~AI~~d~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~~L~  377 (450)
T 1s6y_A          298 LYKDPNLAIKPPQLEKRGGAYYSDAACSLISSIYNDKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVGDLP  377 (450)
T ss_dssp             TTTCC-----------CCSCCHHHHHHHHHHHHHHTCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCC
T ss_pred             HHhhhccccccchhhcccchHHHHHHHHHHHHHHcCCCeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecCCCC
Confidence            00     111100       0001      67899999999999 578988 7867999999999999999999999999


Q ss_pred             HHHHHHHHhhH
Q psy17692        140 QEEIEKLKKSA  150 (211)
Q Consensus       140 deE~~iL~~Sa  150 (211)
                      ++|+..+..+.
T Consensus       378 ~~e~~l~~~~~  388 (450)
T 1s6y_A          378 VAVRGLVQQIK  388 (450)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998887

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.44  E-value=1e-13  Score=128.86  Aligned_cols=138  Identities=9%  Similarity=0.100  Sum_probs=102.3

Q ss_pred             Cceechhh------HHHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCC-CCc-----c-------------C
Q psy17692          5 GKTVSSRK------NCIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPK-RTV-----S-------------S   59 (211)
Q Consensus         5 ~~~~~~~~------~~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~-~~V-----e-------------H   59 (211)
                      +-.++.+|      ++++|.+  |++||||++  |.+|  ||+  ++||+.+|+++ ++|     +             |
T Consensus       165 A~ii~~TNPvdi~T~~~~k~~--p~~rViG~c--~~~~--r~~--~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~h  236 (472)
T 1u8x_X          165 AWMLNYSNPAAIVAEATRRLR--PNSKILNIC--DMPV--GIE--DRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQE  236 (472)
T ss_dssp             CEEEECCSCHHHHHHHHHHHS--TTCCEEECC--SHHH--HHH--HHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETT
T ss_pred             eEEEEeCCcHHHHHHHHHHhC--CCCCEEEeC--CcHH--HHH--HHHHHHhCcCchhceeEEEeccchhhheeeeEeCC
Confidence            34455555      4556776  899999999  9986  999  99999999998 998     3             9


Q ss_pred             CCceeeecccccc-----------------cccc--------------c--------------cc-----c--------c
Q psy17692         60 GKSCIVRKELYRP-----------------ERTV--------------S--------------SR-----K--------N   81 (211)
Q Consensus        60 Gds~vp~~S~~~i-----------------~~~i--------------l--------------~~-----~--------v   81 (211)
                      |++++|.|+...+                 ....              .              ..     +        .
T Consensus       237 G~d~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~  316 (472)
T 1u8x_X          237 GNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGR  316 (472)
T ss_dssp             CCBCHHHHHHHHHHHSSCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHT
T ss_pred             CCEehHhHHHHHHhcCCCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHH
Confidence            9999999987421                 0000              0              00     0        0


Q ss_pred             --cCc-----c-------cccc---cc--------chhhccCCceeEeE-eecCcc-ccccceEeeeceEEecceEEEEe
Q psy17692         82 --CIV-----P-------KELY---CP--------EIEDREQDRRKPAI-HLLGHH-GIEEEVFLSLPCVMADNGVTHIV  134 (211)
Q Consensus        82 --~g~-----p-------v~~~---~~--------~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~s~P~vig~~GV~~Iv  134 (211)
                        ...     +       -..+   ..        ++|.+|++++++++ ..+|+| |+.+|+++++||+||++|+..++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~AI~~d~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~  396 (472)
T 1u8x_X          317 EAFIFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPIT  396 (472)
T ss_dssp             TTTTTTTHHHHHHHTSCCSCSSCCCTTTHHHHHHHHHHHHTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECC
T ss_pred             HHHHHHHHHhhhhcCCcccccccccHHHHHHHHHHHHHhcCCCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEee
Confidence              000     0       0001   11        67899999999999 578988 78779999999999999999999


Q ss_pred             cCCCCHHHHHHHHhhH
Q psy17692        135 NQPLTQEEIEKLKKSA  150 (211)
Q Consensus       135 e~iLsdeE~~iL~~Sa  150 (211)
                      ...|+++|+..+..-.
T Consensus       397 ~~~Lp~~~~~l~~~~~  412 (472)
T 1u8x_X          397 VGTIPQFQKGLMEQQV  412 (472)
T ss_dssp             CBCCCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHH
Confidence            9999999877776543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.82  E-value=5.6e-11  Score=104.26  Aligned_cols=157  Identities=16%  Similarity=0.147  Sum_probs=101.4

Q ss_pred             HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCccCCCceeeeccccccccccccc---------cccC-
Q psy17692         14 CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTVSSGKSCIVRKELYRPERTVSSR---------KNCI-   83 (211)
Q Consensus        14 ~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~VeHGds~vp~~S~~~i~~~il~~---------~v~g-   83 (211)
                      .+.+..-+.|+=+|-.=. -=+|+  +.  +...+..|.++.+| -|-.++.+.++++   +++.+         .+.| 
T Consensus       101 i~~~i~~~~p~aivlvvs-NPvd~--~t--~i~~k~sg~p~~rv-ig~gT~LDs~R~~---~~l~~~~~~~~~~~~V~G~  171 (294)
T 2x0j_A          101 IAKKIVENAPESKILVVT-NPMDV--MT--YIMWKESGKPRNEV-FGMGNQLDSQRLK---ERLYNAGARNIRRAWIIGE  171 (294)
T ss_dssp             HHHHHHTTSTTCEEEECS-SSHHH--HH--HHHHHHSSCCTTSE-EECCHHHHHHHHH---HHHHHTTCEEECCCCEEBC
T ss_pred             HHHHHHhcCCceEEEEec-Ccchh--hH--HhhHHHcCCChhhE-EEeeeEEeHHHHH---HHHhhcccCCcceeEEEec
Confidence            344444455555555541 23565  55  66777779988888 4444445544441   11111         1111 


Q ss_pred             -----cccccccc-------chhhc-cCCceeEeEeecC--ccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHh
Q psy17692         84 -----VPKELYCP-------EIEDR-EQDRRKPAIHLLG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK  148 (211)
Q Consensus        84 -----~pv~~~~~-------~~i~~-d~~~i~~vs~l~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~  148 (211)
                           +|+-..+.       +.+.. -+.....+...+|  .|+++             .++.++++++|.|+ ++.+++
T Consensus       172 HGdt~vp~~S~~~v~g~~~~~~i~~~~~~~g~eIi~~kGst~~a~a-------------~a~~~~~~ail~d~-~~v~~~  237 (294)
T 2x0j_A          172 HGDSMFVAKSLADFDGEVDWEAVENDVRFVAAEVIKRKGATIFGPA-------------VAIYRMVKAVVEDT-GEIIPT  237 (294)
T ss_dssp             SSTTCEECGGGCCEESCCCHHHHHHHHHTHHHHHHHHHSSCCHHHH-------------HHHHHHHHHHHTTC-CCEEEE
T ss_pred             CCCcEEEeeeccCCCCchhHHHHHHHHhhhheEEEecCcccchhHH-------------HHHHHHHHHHHcCC-CcEEEE
Confidence                 33322221       11111 1123344444566  68887             78889999999997 899999


Q ss_pred             hH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        149 SA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       149 Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      |+  ++.|+.   +-|+|++||++|++ +++++||++|+++|++||+.||+
T Consensus       238 s~~l~g~yG~~~v~~s~P~~lg~~Gve-i~~l~L~~~E~~~l~~s~~~lk~  287 (294)
T 2x0j_A          238 SMILQGEYGIENVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNSAKILRE  287 (294)
T ss_dssp             EEEEESGGGCEEEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCccEEEEEEEEEeCCEEE-EeCCCCCHHHHHHHHHHHHHHHH
Confidence            98  677765   45999999999995 88999999999999999999975

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.74  E-value=1.7e-10  Score=102.49  Aligned_cols=66  Identities=24%  Similarity=0.342  Sum_probs=59.4

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.++ ++.+++|+  ++.|+   ++-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus       238 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~  308 (326)
T 3pqe_A          238 MSLARITKAILHNE-NSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKN  308 (326)
T ss_dssp             HHHHHHHHHHHTTC-CEEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CcEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999986 79999987  66776   455999999999999999999999999999999999986

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.72  E-value=1.7e-10  Score=102.56  Aligned_cols=66  Identities=29%  Similarity=0.449  Sum_probs=59.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.++ ++.+++|+  ++.|+   ++-|+|++||++|++++++++||++|+++|++||+.|++
T Consensus       241 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~sa~~L~~  311 (326)
T 3vku_A          241 TALARISKAILNDE-NAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKK  311 (326)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCC-CceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            77788999999986 89999987  66776   455999999999999999999999999999999999975

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.70  E-value=2.5e-10  Score=100.83  Aligned_cols=66  Identities=20%  Similarity=0.397  Sum_probs=59.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.++ ++.+++|+  ++.|+   ++-|+|+++|++|++++++++||++|+++|++|++.||+
T Consensus       239 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~  309 (315)
T 3tl2_A          239 ASLVEMTEAILKDQ-RRVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRN  309 (315)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999986 78999997  67777   455999999999999999999999999999999999986

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.69  E-value=2.7e-10  Score=101.02  Aligned_cols=66  Identities=21%  Similarity=0.350  Sum_probs=59.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ ++++++|+  ++.|+.   +-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus       241 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~  311 (324)
T 3gvi_A          241 ASAIQMAESYLKDK-KRVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAG  311 (324)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999997 79999997  667774   55999999999999999999999999999999999885

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.67  E-value=4.2e-10  Score=100.15  Aligned_cols=66  Identities=27%  Similarity=0.456  Sum_probs=59.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ ++.+++|+  ++.|++    +-|+|++||++|++++++++||++|+++|++|++.||+
T Consensus       253 ~a~a~~~~ail~d~-~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~  324 (331)
T 4aj2_A          253 LSVADLAESIMKNL-RRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWG  324 (331)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            66778999999997 88999987  777764    44999999999999999999999999999999999986

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.62  E-value=5.4e-10  Score=97.85  Aligned_cols=65  Identities=26%  Similarity=0.382  Sum_probs=58.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.++ ++.+++|+  ++.|+   ++-|+|+++|++||+ +++++||++|+++|++|++.||+
T Consensus       218 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l~L~~~E~~~l~~s~~~l~~  287 (294)
T 1oju_A          218 VAIYRMVKAVVEDT-GEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNSAKILRE  287 (294)
T ss_dssp             HHHHHHHHHHHTTC-CCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999986 89999996  66675   455999999999999 99999999999999999999986

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.60  E-value=5.3e-10  Score=98.78  Aligned_cols=66  Identities=20%  Similarity=0.323  Sum_probs=58.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.++ ++.+++|+  ++.|+.   +-|+|+++|++|++++++++||++|+++|++||+.||+
T Consensus       229 ~a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~  299 (314)
T 3nep_X          229 AAAAEMTEAILKDN-KRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVHS  299 (314)
T ss_dssp             HHHHHHHHHHHHTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            67778899999886 78999987  667764   45999999999999999999999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.58  E-value=9.2e-10  Score=96.24  Aligned_cols=57  Identities=30%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             CceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhccc
Q psy17692         99 DRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus        99 ~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      ++++|++ +++| ||    +|+|+||+||++|+.++++..|+++|++.|..|++.+++..+.+
T Consensus       245 ~~~~~~~~~~~g-yg----~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  302 (304)
T 2v6b_A          245 RAVLTVSAPTPE-YG----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQL  302 (304)
T ss_dssp             CEEEEEEEEETT-TT----EEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHC-----
T ss_pred             CcEEEEEEEECC-cC----cEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            4688988 6899 86    99999999999999999999999999999999999998876643

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.53  E-value=2.5e-07  Score=85.48  Aligned_cols=57  Identities=9%  Similarity=-0.015  Sum_probs=48.8

Q ss_pred             chhhccCCceeEeE-eecCcc-ccccceEeeeceEEecceEEEEecCCCCHHHHHHHHh
Q psy17692         92 EIEDREQDRRKPAI-HLLGHH-GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK  148 (211)
Q Consensus        92 ~~i~~d~~~i~~vs-~l~G~y-Gi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~  148 (211)
                      ++|.+|++++++++ ..+|.| |+.+|+++++||+||++|+..+....|.+.++..+..
T Consensus       333 ~aI~~d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g~Lp~~~~~l~~~  391 (450)
T 3fef_A          333 AALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAAR  391 (450)
T ss_dssp             HHHTTSCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCCCCCHHHHHHHHH
T ss_pred             HHHHcCCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccCCCCHHHHHHHHH
Confidence            46778888999999 578887 8867999999999999999999988999997665544

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.53  E-value=1.4e-09  Score=96.21  Aligned_cols=65  Identities=23%  Similarity=0.272  Sum_probs=58.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--H-hHHhhh----cccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--Q-AIKEVF----LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~-~l~~~~----~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ ++.+++|+  + +.|++.    -|+|++||++|++++ +++||++|+++|++||+.||+
T Consensus       239 ~a~~~~~~ail~~~-~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l~L~~~E~~~l~~s~~~l~~  310 (321)
T 3p7m_A          239 AAGIQMAESFLKDK-KMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EVEISDKEREQLQVSINAIKD  310 (321)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999997 79999997  6 788664    499999999999999 999999999999999999985

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.44  E-value=3.8e-09  Score=92.32  Aligned_cols=66  Identities=26%  Similarity=0.325  Sum_probs=57.3

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|++   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       227 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  297 (303)
T 1o6z_A          227 RGVAHMVEAILHDT-GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSD  297 (303)
T ss_dssp             HHHHHHHHHHHTTC-CCEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            55677888899987 78888887  566654   44999999999999999999999999999999999986

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.38  E-value=5.6e-09  Score=91.49  Aligned_cols=66  Identities=23%  Similarity=0.453  Sum_probs=57.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       231 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  301 (309)
T 1ur5_A          231 AATAQMVEAVLKDK-KRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRA  301 (309)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            56777889999987 78898887  566654   34999999999999999999999999999999999986

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.37  E-value=6.4e-09  Score=91.81  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.|++-
T Consensus       241 ~a~~~~~~ai~~~~-~~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~L~~~  312 (322)
T 1t2d_A          241 AAIIEMAESYLKDL-KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRM  312 (322)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            66677889999987 78899887  666654   449999999999999999999999999999999999863

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.37  E-value=4.8e-09  Score=92.14  Aligned_cols=66  Identities=33%  Similarity=0.433  Sum_probs=57.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       233 ~a~~~~~~ai~~~~-~~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~  303 (310)
T 2xxj_A          233 AGLARLVRAILTDE-KGVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILKE  303 (310)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CCEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            55677889999986 78899887  555554   44999999999999999999999999999999999986

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.36  E-value=6.7e-09  Score=91.60  Aligned_cols=67  Identities=22%  Similarity=0.440  Sum_probs=57.9

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+.
T Consensus       236 ~a~~~~~~ai~~~~-~~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~  307 (318)
T 1ez4_A          236 TALMRISKAILRDE-NAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKV  307 (318)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            56778889999986 78899987  565643   459999999999999999999999999999999999863

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.36  E-value=3e-09  Score=94.67  Aligned_cols=64  Identities=31%  Similarity=0.497  Sum_probs=56.5

Q ss_pred             eEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeE--EecCCCCHHHHHHHHHHHHHHHh
Q psy17692        129 GVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTH--IVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       129 GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~--ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ++.++++++|.|+ ++.+++|+  ++.|++    +-|+|++|| +|+++  +++++||++|+++|++||+.||+
T Consensus       252 a~~~~~~ail~~~-~~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~~L~~~E~~~l~~s~~~l~~  323 (330)
T 3ldh_A          252 SVADLAQTIMKDL-CRVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKMKLKPDEEQQLQKSATTLWD  323 (330)
T ss_dssp             HHHHHHHHHHHTC-CEEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecCCCCHHHHHHHHHHHHHHHH
Confidence            6678889999886 78999997  667754    459999999 99999  99999999999999999999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.36  E-value=6.6e-09  Score=90.90  Aligned_cols=66  Identities=23%  Similarity=0.374  Sum_probs=57.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       230 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  300 (310)
T 1guz_A          230 SSVVEMVESIVLDR-KRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDE  300 (310)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            56777889999987 78898887  566654   34999999999999999999999999999999999986

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.36  E-value=6.7e-09  Score=91.17  Aligned_cols=66  Identities=24%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       227 ~a~~~~~~ai~~~~-~~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~  297 (308)
T 2d4a_B          227 AGLVLTVEAIKRDS-KRIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVKK  297 (308)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            55778889999987 78898887  566654   34999999999999999999999999999999999986

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.36  E-value=5.6e-09  Score=91.78  Aligned_cols=66  Identities=23%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       239 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  309 (316)
T 1ldn_A          239 MGLARVTRAILHNE-NAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKS  309 (316)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            45677888899986 78888887  555544   44999999999999999999999999999999999986

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.35  E-value=7.4e-09  Score=91.08  Aligned_cols=66  Identities=30%  Similarity=0.468  Sum_probs=57.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       238 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  308 (317)
T 3d0o_A          238 MGLARITEAIFRNE-DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKD  308 (317)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            56778889999986 78899987  565643   45999999999999999999999999999999999986

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.35  E-value=6e-09  Score=91.78  Aligned_cols=66  Identities=26%  Similarity=0.357  Sum_probs=56.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++||+.||+
T Consensus       240 ~a~~~~~~ai~~~~-~~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~  310 (318)
T 1y6j_A          240 VSINTIVETLLKNQ-NTIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKK  310 (318)
T ss_dssp             HHHHHHHHHHHHTC-CCEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            55667888888885 78888887  555554   44999999999999999999999999999999999986

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.34  E-value=7e-09  Score=91.11  Aligned_cols=66  Identities=30%  Similarity=0.415  Sum_probs=57.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ ++.+++|+  ++.|++   +-++||+||++|++++++++|+++|+++|++||+.||+
T Consensus       232 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~  302 (319)
T 1a5z_A          232 LAVADIVESIFFDE-KRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKN  302 (319)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCEEEEEEEecCccCccceEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            56678889999986 78898887  555554   44999999999999999999999999999999999986

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.34  E-value=7.3e-09  Score=92.55  Aligned_cols=65  Identities=12%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--Hh--HHhhhcccceeecCCceeEEecCC--CCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QA--IKEVFLSLPCVMADNGVTHIVNQP--LTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~--l~~~~~svP~vlg~~Gv~~ii~l~--L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++|.|+ +..+++|+  ++  ..+++-|+|++||++||+++ +++  ||++|+++|++||+.||+
T Consensus       242 ~a~~~~~~ail~d~-~~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~  312 (343)
T 3fi9_A          242 YVSIEMIRAAMGGE-AFRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAK  312 (343)
T ss_dssp             HHHHHHHHHHTTSS-CCCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHH
Confidence            56677899999997 68899887  32  23456699999999999987 555  899999999999999986

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.34  E-value=7.4e-09  Score=91.35  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             ceEEEEecCC---CCHHHHHHHHhhH-H--hHHhhhcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQP---LTQEEIEKLKKSA-Q--AIKEVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~i---LsdeE~~iL~~Sa-~--~l~~~~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++.+   |+++ +..+++|. +  +.++++-|+|+++|++|+++++++ +||++|+++|++|++.||+
T Consensus       229 ~a~~~~~~ai~~~l~~~-~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~  301 (312)
T 3hhp_A          229 QAAARFGLSLVRALQGE-QGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK  301 (312)
T ss_dssp             HHHHHHHHHHHHHHTTC-SSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-CceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            7777788777   6775 67888774 2  356677799999999999999999 9999999999999999986

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.32  E-value=9.6e-09  Score=90.95  Aligned_cols=66  Identities=20%  Similarity=0.364  Sum_probs=57.8

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       249 ~a~~~ii~ai~~~~-~~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~  319 (331)
T 1pzg_A          249 ASAVAMATSFLNDE-KRVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMA  319 (331)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            66778889999987 78898887  666654   34999999999999999999999999999999999986

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.32  E-value=9.6e-09  Score=90.95  Aligned_cols=67  Identities=28%  Similarity=0.426  Sum_probs=57.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      .++.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+.
T Consensus       241 ~aa~~~~~ai~~~~-~~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~  312 (326)
T 2zqz_A          241 TALARISKAILNDE-NAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKV  312 (326)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            56777889999986 78898887  565543   459999999999999999999999999999999999863

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.31  E-value=8.9e-09  Score=90.28  Aligned_cols=66  Identities=26%  Similarity=0.391  Sum_probs=56.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH----hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK----EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~----~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ ++.+++|+  ++.|    +.+-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       234 ~a~~~~~~ai~~~~-~~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  305 (313)
T 1hye_A          234 AAILNVVRCIVNNE-KRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK  305 (313)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            55677888899987 78888887  5555    3445999999999999999999999999999999999986

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.29  E-value=1.3e-08  Score=90.04  Aligned_cols=67  Identities=22%  Similarity=0.321  Sum_probs=57.8

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      ..+.++++++++++ ++.+++|+  ++.|+.   +-++||+||++|++++++++|+++|+++|++|++.||+.
T Consensus       248 ~a~~~i~~ai~~~~-~~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~  319 (328)
T 2hjr_A          248 ASAVAMAQAYLKDS-KSVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQNL  319 (328)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            66778889999987 68888887  666654   349999999999999999999999999999999999863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.28  E-value=8.5e-09  Score=90.46  Aligned_cols=66  Identities=29%  Similarity=0.483  Sum_probs=56.4

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ ++.+++|+  ++.|++    +-++||+||++|+++++++ +|+++|+++|++||+.||+
T Consensus       224 ~a~~~i~~ai~~~~-~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~  296 (303)
T 2i6t_A          224 LSVADMVDSIVNNK-KKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHS  296 (303)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            66778889999987 78888887  666544    4499999999999999999 8999999999999999986

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.25  E-value=1.6e-08  Score=88.01  Aligned_cols=65  Identities=25%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ +..+++|+  ++ .+.+-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       234 ~a~~~~~~ai~~~~-~~~~~~~~~~~g-~~~~~~vP~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  300 (309)
T 1hyh_A          234 TSAIRIAKAVMADA-HAELVVSNRRDD-MGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQ  300 (309)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEECTT-TCSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcEEEEEEEECC-CCeEEEEEEEEeCCceEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            44566777778876 67777776  55 56667999999999999999999999999999999999986

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.23  E-value=1.7e-08  Score=88.29  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.++++++++++ ++.+++++  ++.++.   +-++||+||++|++++++++|+++|+++|++|++.||+
T Consensus       238 ~a~~~~~~ai~~~~-~~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  308 (317)
T 2ewd_A          238 AAAVKMAEAYLKDK-KAVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVNT  308 (317)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            45566777778876 57777776  555544   44999999999999999999999999999999999986

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=98.15  E-value=1e-07  Score=86.20  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             EEEEecCCC-----CHHHHHHHHhhH--Hh-HHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        130 VTHIVNQPL-----TQEEIEKLKKSA--QA-IKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       130 V~~Ive~iL-----sdeE~~iL~~Sa--~~-l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +.+++++++     +|+ ++.+++|+  ++ .|++    +-|+|++||++|++++++ ++||++|+++|++||+.|++
T Consensus       271 a~~i~~~i~~~l~g~d~-~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l~~Sa~~L~~  347 (375)
T 7mdh_A          271 AVSIADAIKSLVTPTPE-GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA  347 (375)
T ss_dssp             HHHHHHHHHHHHSCCCT-TCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCC-CeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            445666665     465 78999997  66 6765    459999999999999995 99999999999999998875

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.07  E-value=9.3e-08  Score=83.73  Aligned_cols=65  Identities=12%  Similarity=0.142  Sum_probs=55.1

Q ss_pred             eEEEEecCCCCHH-HHHHHHhhH--HhHHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        129 GVTHIVNQPLTQE-EIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       129 GV~~Ive~iLsde-E~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ++.+++++++++. +++.+++|+  ++.|++    +-|+|++| ++|++++++ ++|+++|+++|++|++.||+
T Consensus       244 a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s~~~l~~  316 (327)
T 1y7t_A          244 AAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEITAQELLD  316 (327)
T ss_dssp             HHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            4567788888884 478899888  556665    45999999 999999998 99999999999999999985

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.01  E-value=7.1e-07  Score=79.23  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             eEEEEecCCCCHH-HHHHHHhhH--Hh-HHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        129 GVTHIVNQPLTQE-EIEKLKKSA--QA-IKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       129 GV~~Ive~iLsde-E~~iL~~Sa--~~-l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .+..+++.++.++ |++++++|+  ++ .|++    +-|+|++| ++|++++++ ++||++|+++|++||+.||+
T Consensus       248 ~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~l~~sa~~L~~  321 (333)
T 5mdh_A          248 AICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKMDLTAKELAE  321 (333)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            3444555555554 356888887  66 7765    45999999 999999998 99999999999999999986

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.88  E-value=4.8e-07  Score=79.70  Aligned_cols=65  Identities=9%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             eEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        129 GVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       129 GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .+.+++++++.+.+++.+++|+  ++.|++    +-++||+| ++|++++++ ++|+++|+++|++|++.||+
T Consensus       248 a~~~~~~ai~~~~~~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~  319 (329)
T 1b8p_A          248 AAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINVTLNELLE  319 (329)
T ss_dssp             HHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            3455677777662367888887  555665    45999999 999999998 99999999999999999986

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.74  E-value=1.8e-05  Score=69.38  Aligned_cols=67  Identities=10%  Similarity=0.132  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCHHH--HHHHHhhH-HhHH--hhhcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEE--IEKLKKSA-QAIK--EVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE--~~iL~~Sa-~~l~--~~~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++|..  +..++++. ++.|  +.+-++||+||++|+++++++ +|+++|+++|++|++.||+
T Consensus       229 ~a~~~~~~ai~~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~  301 (314)
T 1mld_A          229 YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA  301 (314)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            555666677776641  13555532 3322  334599999999999999999 9999999999999999985

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.64  E-value=3e-05  Score=68.19  Aligned_cols=66  Identities=14%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             ceEEEEecCC---CCHHHHHHHHhhH-HhH--HhhhcccceeecCCceeEEec-CCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQP---LTQEEIEKLKKSA-QAI--KEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~i---LsdeE~~iL~~Sa-~~l--~~~~~svP~vlg~~Gv~~ii~-l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++   ++++ +..+++|. ++.  .+.+-++||+||++|++++++ ++|+++|+++|++|++.||+
T Consensus       237 ~a~~~~~~ai~~~~~~~-~~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~  309 (326)
T 1smk_A          237 YAAVKFADACLRGLRGD-AGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAG  309 (326)
T ss_dssp             HHHHHHHHHHHHHHHTC-SCEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CeEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            5555566666   5555 45555553 221  124459999999999999999 99999999999999999986

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.41  E-value=6.8e-06  Score=75.07  Aligned_cols=65  Identities=11%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH-----hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHH
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK-----EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK  193 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~-----~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik  193 (211)
                      ..+.+|++++++|+ ++++++|+  ++.+     +.+-++||+||++|++.++..+|+++|+++|+.+++..+
T Consensus       298 ~~a~~ii~AI~~d~-~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~~L~~~e~~~l~~~~~~e~  369 (417)
T 1up7_A          298 TAAAHLIRDLETDE-GKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYER  369 (417)
T ss_dssp             HHHHHHHHHHHSSS-CEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecCCCCHHHHHHHHHHHHHHH
Confidence            44667889999997 89999998  5544     334599999999999999999999999999999997765

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.40  E-value=2.7e-06  Score=78.44  Aligned_cols=63  Identities=10%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH-----hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHH
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK-----EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA  191 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~-----~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~  191 (211)
                      ..+.+|++++++|+ ++++++|+  ++.+     +.+-++||+||++|++.++..+|+++|++.|+.+++.
T Consensus       321 ~~a~~ii~AI~~d~-~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~~L~~~e~~l~~~~~~~  390 (450)
T 1s6y_A          321 DAACSLISSIYNDK-RDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVGDLPVAVRGLVQQIKSF  390 (450)
T ss_dssp             HHHHHHHHHHHHTC-CCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            55778999999997 89999998  5544     3345999999999999999999999999999998854

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.29  E-value=0.00012  Score=63.00  Aligned_cols=36  Identities=33%  Similarity=0.675  Sum_probs=34.8

Q ss_pred             ccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        159 SLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       159 svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ++|+.+|++|++++++++|+++|+++|++|++.||+
T Consensus       277 gvp~~~~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~  312 (319)
T 1lld_A          277 SVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKE  312 (319)
T ss_dssp             EEEEEEETTEEECCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999986

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.72  E-value=3.2e-05  Score=71.70  Aligned_cols=61  Identities=11%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH-----hhhcccceeecCCceeEEecCCCCHHHHHHHHHHH
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK-----EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA  189 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~-----~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa  189 (211)
                      ..+.+|++++++|+ ++++++|+  ++.+     +++-++||+||++||+.++..+|+++|++.++.-.
T Consensus       345 ~~a~~ii~AI~~d~-~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~~Lp~~~~~l~~~~~  412 (472)
T 1u8x_X          345 SYIVDLARAIAYNT-GERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQV  412 (472)
T ss_dssp             HHHHHHHHHHHHTC-CEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecCCCCHHHHHHHHHHH
Confidence            56677899999997 89999998  5543     34459999999999999999999999999988754

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.35  E-value=0.00078  Score=60.00  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=39.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH-----HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA-----QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa-----~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++.++.++ +...++|+     ++.|++    +-|+|+++|++|++.+..++|+++|+++|++|++.||+
T Consensus       264 ~a~~~~~~~~l~~~-~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~G~~~iv~~l~l~~~e~~~l~~s~~~L~~  338 (345)
T 4h7p_A          264 KAAVDHVHDWIHGT-PEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSGKLNGDLGKQRLASTIAELQE  338 (345)
T ss_dssp             HHHHHHHHHHHHCC-CTTCCEEEEEECTTCTTCCCSSCEEEEEEEEETTEEEECCSCC-----CGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCceEEEEEEEeCCCCcCCCCCEEEEEEEEEeCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            33444455544443 34444443     355554    44999999854444444689999999999999999986

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.11  E-value=0.0067  Score=56.25  Aligned_cols=43  Identities=12%  Similarity=0.005  Sum_probs=35.0

Q ss_pred             CceechhhH------HHHHHhCCCCCcEEecCCCCcCcccCccchhhhhhhhCCCCCCc
Q psy17692          5 GKTVSSRKN------CIVRKELYRPERTVSSGKNCIVPKELFRPERTVSSRKNRPKRTV   57 (211)
Q Consensus         5 ~~~~~~~~~------~~~k~sg~p~~rviG~g~~t~LDs~R~~~~~~la~~~~v~~~~V   57 (211)
                      +-.++.+|+      +++|   ||++||||++  |.+|+  |+  ++| +.+|+++++|
T Consensus       146 A~ii~~TNPvdi~t~~~~k---~p~~rviG~c--~~~~~--~~--~~l-~~lgv~~~~v  194 (480)
T 1obb_A          146 AWYLQAANPIFEGTTLVTR---TVPIKAVGFC--HGHYG--VM--EIV-EKLGLEEEKV  194 (480)
T ss_dssp             CEEEECSSCHHHHHHHHHH---HSCSEEEEEC--SGGGH--HH--HHH-HHTTCCGGGE
T ss_pred             eEEEEeCCcHHHHHHHHHH---CCCCcEEecC--CCHHH--HH--HHH-HHhCCCHHHc
Confidence            344555554      4455   8999999999  99996  78  999 9999999999

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=93.74  E-value=0.0024  Score=58.79  Aligned_cols=61  Identities=11%  Similarity=0.034  Sum_probs=49.3

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH-h----hhcccceeecCCceeEEecCCCCHHHHHHHHHHH
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK-E----VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA  189 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~-~----~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa  189 (211)
                      ..+.++++++++|+ +.++++|+  ++.+ +    .+-++||+||++|++.+...+|++.++..++.-.
T Consensus       326 e~~~~ii~aI~~d~-~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g~Lp~~~~~l~~~~~  393 (450)
T 3fef_A          326 EEGVNIIAALLGLG-ELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAARHI  393 (450)
T ss_dssp             CCHHHHHHHHTTSC-CEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccCCCCHHHHHHHHHHH
Confidence            55677889999997 78999988  4443 3    3459999999999999999999999988776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	7e-11
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	2e-07
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	1e-10
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	4e-08
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	2e-10
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	4e-07
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	1e-09
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	9e-08
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-09
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-07
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	2e-09
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	9e-08
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	2e-09
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	5e-08
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	3e-09
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	5e-06
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	6e-09
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	8e-08
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-08
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	3e-07
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	2e-08
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	9e-08
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	3e-08
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	9e-07
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	3e-08
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	5e-07
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	3e-08
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	5e-07
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	4e-08
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	2e-06
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	5e-08
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	3e-06
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	1e-07
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	1e-05
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	1e-07
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	3e-07
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	1e-07
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	7e-05
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	2e-07
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	7e-06
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	6e-07
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	3e-04
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	3e-06
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	0.001
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	4e-05
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	1e-04

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
            + G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + ++
Sbjct: 116 MVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDI 166

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  + 
Sbjct: 125 NEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLW 164

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 96  REQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
            +     P   +L      E V + +P  +  NG   + +  L+ EEIEKL+ SA+ ++E
Sbjct: 87  EDTGEIIPTSMILQGEYGIENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRE 145

Query: 156 VFLSL 160
               L
Sbjct: 146 RLEEL 150

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I+ V + +P  +  NG   + +  L+ EEIEKL+ SA+ ++
Sbjct: 105 IENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILR 144

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 97  EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
            +        + G HGI+EEVFLS+PCV+ ++G+T  V   +T EE   LKKSA  +  +
Sbjct: 107 LKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNM 166

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +EVFLS+PCV+ ++G+T  V   +T EE   LKKSA  + 
Sbjct: 125 EEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLW 164

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 102 KPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
             A  ++ +   +  ++LS P ++  +GV       LT +E EKL +S   I++ F
Sbjct: 101 AHAELVVSNRRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRF 156

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 47.5 bits (112), Expect = 9e-08
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 156 VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           ++LS P ++  +GV       LT +E EKL +S   I+
Sbjct: 116 MYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQ 153

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 89  YCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 148
                    ++        L     E +V++ +P V+  NG+  ++   L  +E  +   
Sbjct: 95  RVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHH 154

Query: 149 SAQAIKEVF 157
           SA  +K V 
Sbjct: 155 SAATLKSVL 163

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            ++V++ +P V+  NG+  ++   L  +E  +   SA  +K
Sbjct: 120 ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLK 160

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 54  KRTVSSGKSCIVRKELYRPERTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGI 113
           +RT + G   +         +  S+              I    +     A+ L G +GI
Sbjct: 64  ERTRNGGAEIVEHL------KQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGI 117

Query: 114 EEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
           ++  F+ +P  +  NGV  I    L Q +++ L+KSA+ + E
Sbjct: 118 DK-TFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDE 158

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I + F+ +P  +  NGV  I    L Q +++ L+KSA+ + 
Sbjct: 117 IDKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVD 157

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 97  EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           E+     + ++ G      +V + +P  +  +G+  +V+  L ++EI   +KSA+ IK+ 
Sbjct: 102 EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKY 161

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 48.3 bits (114), Expect = 5e-08
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 74  RTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEE-EVFLSLPCVMADNGVTH 132
            ++         +    P  E  E  + K    +    G E       L  V        
Sbjct: 44  TSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEK 103

Query: 133 IVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 192
            +           +      I++V + +P  +  +G+  +V+  L ++EI   +KSA+ I
Sbjct: 104 RLLTLSAY-----VDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEII 158

Query: 193 K 193
           K
Sbjct: 159 K 159

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 20/51 (39%), Positives = 35/51 (68%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
            +   +GI++ VFLSLPCV+ D+G+++IV   L   E ++L+KSA  + ++
Sbjct: 113 MVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDI 163

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 154 KEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
             VFLSLPCV+ D+G+++IV   L   E ++L+KSA  + 
Sbjct: 122 DNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLW 161

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 14/65 (21%), Positives = 25/65 (38%)

Query: 92  EIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQ 151
           E   ++  +      LL       ++F   P V+  NGV  ++   L  EE  K  ++  
Sbjct: 97  ESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIA 156

Query: 152 AIKEV 156
             K +
Sbjct: 157 ETKRM 161

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 47.9 bits (113), Expect = 8e-08
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
             ++F   P V+  NGV  ++   L  EE  K  ++    K
Sbjct: 119 HSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETK 159

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 98  QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
            +R  P   +L       ++ +S+P ++   GV + +N P++ +E+  LK+SA+ +KE 
Sbjct: 106 TNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKET 164

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 14/72 (19%), Positives = 37/72 (51%)

Query: 122 PCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEE 181
             +   + +  +++       +  + K    I ++ +S+P ++   GV + +N P++ +E
Sbjct: 91  IGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKE 150

Query: 182 IEKLKKSAQAIK 193
           +  LK+SA+ +K
Sbjct: 151 LAALKRSAETLK 162

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 106 HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSL 160
           +L G +G+ + ++  +P ++   GV  I+  PL +EE+  L  SA+A++    +L
Sbjct: 110 YLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 163

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 74  RTVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHI 133
            T+S              +I +R +      ++LL             P       V  +
Sbjct: 43  STISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGSAY-----YAPAAATAQMVEAV 97

Query: 134 VNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +        +         + +++  +P ++   GV  I+  PL +EE+  L  SA+A++
Sbjct: 98  LKDKKRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVR 157

Query: 194 -IRDFVK 199
              D +K
Sbjct: 158 ATLDTLK 164

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 13/68 (19%), Positives = 34/68 (50%)

Query: 90  CPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKS 149
             +   R+++   P    +       ++++  P ++   G+  I+  PL+ +E++K++ S
Sbjct: 95  ISKAILRDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDS 154

Query: 150 AQAIKEVF 157
           A  +K+V 
Sbjct: 155 AATLKKVL 162

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 45.2 bits (106), Expect = 9e-07
 Identities = 11/49 (22%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK--IRDFVK 199
           + ++++  P ++   G+  I+  PL+ +E++K++ SA  +K  + D + 
Sbjct: 119 LNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLNDGLA 167

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 97  EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           E      ++++ G +GI + +++  P V+  NG+ +I+  PLT  E E ++KSA  +K+V
Sbjct: 104 ENAVLPLSVYMDGQYGIND-LYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKV 162

Query: 157 F 157
            
Sbjct: 163 L 163

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           I ++++  P V+  NG+ +I+  PLT  E E ++KSA  +K
Sbjct: 120 INDLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLK 160

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 108 LGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           L      E+    +P  +  NGV  IV   L   E + +  +A+ + + +
Sbjct: 108 LEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQY 157

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
            ++    +P  +  NGV  IV   L   E + +  +A+ + 
Sbjct: 114 HEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLS 154

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 97  EQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEV 156
           +   R     + G +GIE+   +SLP ++   GV  ++   LT EE E L+ SA+ +K+V
Sbjct: 105 QNTIRTVGTVINGMYGIEDV-AISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKV 163

Query: 157 F 157
            
Sbjct: 164 L 164

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK-IRDFVK 199
           I++V +SLP ++   GV  ++   LT EE E L+ SA+ +K + + VK
Sbjct: 121 IEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEVK 168

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 9/68 (13%), Positives = 18/68 (26%)

Query: 89  YCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKK 148
               +           I   G +GI E V    P    +     +    +     E++  
Sbjct: 95  IHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINV 154

Query: 149 SAQAIKEV 156
           +   + E 
Sbjct: 155 TLNELLEE 162

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 146 LKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK-IRDFVK 199
              S    + V    P    +     +    +     E++  +   +   ++ V+
Sbjct: 113 SDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQNGVQ 167

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKE 155
             +G+ +++  S P  + D     +   P+     EK+  +A+ + E
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 167

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA-IKIRDFVK 199
             ++  S P  + D     +   P+     EK+  +A+   + ++   
Sbjct: 126 PDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAF 173

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 98  QDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVF 157
           + R       L  +   +++ +S+P  +  +GV  I+   L +EE+E  +KSA  +K   
Sbjct: 105 EKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAI 164

Query: 158 LSL 160
             +
Sbjct: 165 NEI 167

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 16/72 (22%), Positives = 32/72 (44%)

Query: 122 PCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQPLTQEE 181
             +   + V  I         +    +    +K++ +S+P  +  +GV  I+   L +EE
Sbjct: 90  IALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILELNLNEEE 149

Query: 182 IEKLKKSAQAIK 193
           +E  +KSA  +K
Sbjct: 150 LEAFRKSASILK 161

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 93  IEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQA 152
           +   E D    A+   G +GI E +  S P    D     +    + +   ++++ +AQ 
Sbjct: 100 LGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQE 159

Query: 153 IKE 155
           + +
Sbjct: 160 LLD 162

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 157 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK-IRDFVK 199
             S P    D     +    + +   ++++ +AQ +    + VK
Sbjct: 125 VYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQVK 168

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 95  DREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 154
           + E+     +++  G +G+++      P V+   G+  ++   L +EE ++ +KS   + 
Sbjct: 104 NDEKRVIPCSVYCNGEYGLKDMFIGL-PAVIGGAGIERVIELELNEEEKKQFQKSVDDVM 162

Query: 155 EV 156
            +
Sbjct: 163 AL 164

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 153 IKEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIK 193
           +K++F+ LP V+   G+  ++   L +EE ++ +KS   + 
Sbjct: 122 LKDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVM 162

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 93  IEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQP-LTQEEIEKLKKSAQ 151
           + D    +              +  + S P ++   G+   +    ++  E + + ++  
Sbjct: 94  LVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP 153

Query: 152 AIKE 155
            +K 
Sbjct: 154 ELKA 157

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 9/129 (6%)

Query: 77  SSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQ 136
           S     +   +     +  R Q+     +      G               + V  +  +
Sbjct: 42  SQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGK 101

Query: 137 PLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVNQP-LTQEEIEKLKKSAQAIK-- 193
                 +E     +Q     + S P ++   G+   +    ++  E + + ++   +K  
Sbjct: 102 EGV---VECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKAS 158

Query: 194 IR---DFVK 199
           I+   +FVK
Sbjct: 159 IKKGEEFVK 167

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 109 GHHGIEEEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKE 155
             +GI E++  S+PC    +G   +  +        E++KKS   +  
Sbjct: 117 NPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 154 KEVFLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIK-IRDFVK 199
           +++  S+PC    +G   +  +        E++KKS   +   +  V 
Sbjct: 123 EDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVA 170

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 110 HHGIEEEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIKE 155
               +   F S P ++  NGV    +   L+  E   L+     +K+
Sbjct: 110 EGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK 156

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 75  TVSSRKNCIVPKELYCPEIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIV 134
           T+    + +        E+ D  +  +     ++          LS+    A  G++ + 
Sbjct: 36  TILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVR 95

Query: 135 NQPLTQEEIEKLKKSAQAIKEVFLSLPCVMADNGVTHIVN-QPLTQEEIEKLKKSAQAIK 193
                Q  +E            F S P ++  NGV    +   L+  E   L+     +K
Sbjct: 96  ALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLK 155

Query: 194 --IR---DFVK 199
             I    +FV 
Sbjct: 156 KDIALGQEFVN 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.94
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.94
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.94
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.94
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.94
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.93
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.93
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.93
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.93
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.93
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.93
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.93
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.92
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.92
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.92
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.91
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.91
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.91
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.91
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.91
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.9
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.82
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.8
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.21
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.77
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.67
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	98.66
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.62
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	98.58
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.58
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	98.54
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.51
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	98.39
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	98.39
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.37
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.37
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.36
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	98.32
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.32
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.26
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.26
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.25
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	98.18
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	98.14
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.09
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	98.03
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	86.82
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	86.6
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	83.73
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	81.92

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.94  E-value=8e-28  Score=192.68  Aligned_cols=119  Identities=30%  Similarity=0.454  Sum_probs=106.0

Q ss_pred             cCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc-----------
Q psy17692         29 SGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP-----------   91 (211)
Q Consensus        29 ~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~-----------   91 (211)
                      +|  |.|||+||+  ++||+++|+++.+|      +||++|||+||++         .++|.|+..+.+           
T Consensus         1 ~G--T~LDs~R~~--~~lA~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~---------~v~g~~~~~~~~~~~~~~~~~~~   67 (172)
T d1i0za2           1 SG--CNLDSARFR--YLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGV---------NVAGVSLQELNPEMGTDNDSENW   67 (172)
T ss_dssp             CT--THHHHHHHH--HHHHHHHTSCGGGCBCCEEBCSSTTCEECGGGC---------EETTEEHHHHCTTTTSSSCSSCT
T ss_pred             CC--ChHHHHHHH--HHHHHHhCcCHHHceEEEEccCCCcccccHhhc---------eeCCeeHHHhhhhhccchhHHHH
Confidence            57  999999999  99999999999999      9999999999999         777777655432           


Q ss_pred             ---------------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCC
Q psy17692         92 ---------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQP  137 (211)
Q Consensus        92 ---------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~i  137 (211)
                                                       +.+..+++.++|++ +++|+||+.+++|+|+|+++|++|+..++++.
T Consensus        68 ~~i~~~~~~~~~~~~~~~~~s~~a~a~~~~~~~~~~~~~~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l~  147 (172)
T d1i0za2          68 KEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQK  147 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCCC
T ss_pred             HHHHHHhccceEEeeecccccchHHHHHHHHHHHHHhcCCCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCCC
Confidence                                             34567778899998 68999999779999999999999999999999


Q ss_pred             CCHHHHHHHHhhHHhHHhhhccc
Q psy17692        138 LTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       138 LsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+++|++.|..|++.+++..+++
T Consensus       148 L~~~E~~~l~~Sa~~l~~~~~~l  170 (172)
T d1i0za2         148 LKDDEVAQLKKSADTLWDIQKDL  170 (172)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999888887654

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.94  E-value=1e-27  Score=192.34  Aligned_cols=115  Identities=25%  Similarity=0.277  Sum_probs=103.6

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+||+  ++||+++|++|.+|      +||++|+|+||++         +++|.|+.++++               
T Consensus         1 T~LDs~R~~--~~la~~lgv~~~~V~~~ViG~Hg~t~vp~~s~~---------~i~g~~~~~~~~~~~~~~~~~~~~~~~   69 (169)
T d1y6ja2           1 TVLDSIRFR--YLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCT---------HIAGKNINEYIDDPKCNFTEEDKKKIA   69 (169)
T ss_dssp             THHHHHHHH--HHHHTTTTCCTTTEECCEEBCSSSSCEECCTTC---------EETTBCSCCC-----------CCHHHH
T ss_pred             CccHHHHHH--HHHHHHhCcCHHHceEEEEccCCCCCccCeeec---------ccCchhHHHHHHHhhhhhhHHHHHHHH
Confidence            789999999  99999999999999      9999999999999         888888777643               


Q ss_pred             -----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHH
Q psy17692         92 -----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQE  141 (211)
Q Consensus        92 -----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsde  141 (211)
                                                   +++..|+++++|++ +++|+||+ +|+|+|+|+++|++|+.+++++.|+|+
T Consensus        70 ~~~~~~~~~i~~~~~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~g~yg~-~~i~~s~Pv~lg~~Gv~~i~~l~Ls~~  148 (169)
T d1y6ja2          70 EDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQFNLTPE  148 (169)
T ss_dssp             HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHTCCCEECCEEEECSBTTB-CSEEEECCEEEETTEEEECCCCCCCHH
T ss_pred             HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhccCCCCceeeeeeeccccCC-cccceeeeeEEcCCcEEEEecCCCCHH
Confidence                                         34677888999998 68999999 799999999999999999999999999


Q ss_pred             HHHHHHhhHHhHHhhhcc
Q psy17692        142 EIEKLKKSAQAIKEVFLS  159 (211)
Q Consensus       142 E~~iL~~Sa~~l~~~~~s  159 (211)
                      |++.|..|++.+++..+.
T Consensus       149 E~~~l~~s~~~lk~~~~~  166 (169)
T d1y6ja2         149 EEEALRFSAEQVKKVLNE  166 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999888877654

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.94  E-value=9.7e-28  Score=191.50  Aligned_cols=119  Identities=27%  Similarity=0.361  Sum_probs=105.7

Q ss_pred             cCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc-----------
Q psy17692         29 SGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP-----------   91 (211)
Q Consensus        29 ~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~-----------   91 (211)
                      +|  |.|||+||+  ++||+++|+++.+|      +||++|+|+||++         .+++.|+..+..           
T Consensus         1 sG--T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~---------~i~~~~~~~~~~~~~~~~~~~~~   67 (169)
T d1ldma2           1 SG--CNLDSARFR--YLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGM---------NVASIKLHPLDGTNKDKQDWKKL   67 (169)
T ss_dssp             CT--THHHHHHHH--HHHHHHHTSCGGGCBCCBCBCSSTTCCBCGGGC---------EETTEESHHHHSSTTTTTTTTHH
T ss_pred             CC--chHHHHHHH--HHHHHHHCcCHHHeEEEEEcCCCccchhhhhhc---------ccCCcchHHhhcccchhhhccee
Confidence            57  999999999  99999999999999      9999999999999         777777755432           


Q ss_pred             ------------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCH
Q psy17692         92 ------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ  140 (211)
Q Consensus        92 ------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd  140 (211)
                                                    +++..+++.+++++ +++|+||+.+++|+|+|+++|++|+.+++++.|++
T Consensus        68 ~~~~~~~~~~~~~~~~s~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l~L~~  147 (169)
T d1ldma2          68 HKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKP  147 (169)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCCCCCH
T ss_pred             EEEecCceEEEeccccchhhHHHHHHhhhhheecCCCCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecCCCCH
Confidence                                          34567778899988 68999999779999999999999999999999999


Q ss_pred             HHHHHHHhhHHhHHhhhccc
Q psy17692        141 EEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       141 eE~~iL~~Sa~~l~~~~~sv  160 (211)
                      +|++.|..|++.++++.+++
T Consensus       148 ~E~~~l~~s~~~l~~~~k~l  167 (169)
T d1ldma2         148 NEEQQLQKSATTLWDIQKDL  167 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999998888776654

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2.2e-27  Score=189.67  Aligned_cols=119  Identities=17%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             cCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc-----------
Q psy17692         29 SGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP-----------   91 (211)
Q Consensus        29 ~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~-----------   91 (211)
                      +|  |+|||+|||  ++||+++|+++++|      +||++|||+||++         +++|.|+..+..           
T Consensus         1 ~G--T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~---------~i~g~~~~~~~~~~~~~~~~~~~   67 (168)
T d1hyea2           1 LG--THLDSLRFK--VAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSAT---------SIGGIPIQKFERFKELPIDEIIE   67 (168)
T ss_dssp             CT--THHHHHHHH--HHHHHHHTCCGGGEECCEEECSSTTEEECGGGC---------EETTEEGGGCGGGGGCCHHHHHH
T ss_pred             CC--chHHHHHHH--HHHHHHHCcCHHHeEEEEEcCCCCccccchhhe---------eECCEecccccccchhhhhhHHH
Confidence            58  999999999  99999999999999      9999999999999         788888876654           


Q ss_pred             ----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHH
Q psy17692         92 ----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEE  142 (211)
Q Consensus        92 ----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE  142 (211)
                                                  +.+..+.+++++++ ++.|+||..+|+|+|+|+++|++|+.+++++.|+++|
T Consensus        68 ~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l~Ls~~E  147 (168)
T d1hyea2          68 DVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDE  147 (168)
T ss_dssp             HHHHHTTSCCC------CCHHHHHHHHHHHHHTTCCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCCCCCHHH
T ss_pred             HHhhhHHHHHHhccCccccchhhhhHHHHhhhccCCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecCCCCHHH
Confidence                                        23455666777766 6777654448999999999999999999999999999


Q ss_pred             HHHHHhhHHhHHhhhccc
Q psy17692        143 IEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       143 ~~iL~~Sa~~l~~~~~sv  160 (211)
                      ++.|..|++.+++.++.+
T Consensus       148 ~~~l~~Sa~~lk~~~~~~  165 (168)
T d1hyea2         148 IIAFRKSAEIIKKYCEEV  165 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999998888776543

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=1.8e-27  Score=189.39  Aligned_cols=115  Identities=25%  Similarity=0.328  Sum_probs=97.9

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc----cCCCceeeeccccccccccccccccCccccc--------------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV----SSGKSCIVRKELYRPERTVSSRKNCIVPKEL--------------------   88 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V----eHGds~vp~~S~~~i~~~il~~~v~g~pv~~--------------------   88 (211)
                      |.|||+|||  ++|++....+..+-    ||||+|||+||.+         +++|.|..+                    
T Consensus         2 t~LDsaR~r--~~l~~~~~~~v~~a~ViGeHGds~vp~~S~~---------~i~g~~~~~~i~~~v~~~g~eIi~~kG~t   70 (152)
T d1ojua2           2 NQLDSQRLK--ERLYNAGARNIRRAWIIGEHGDSMFVAKSLA---------DFDGEVDWEAVENDVRFVAAEVIKRKGAT   70 (152)
T ss_dssp             HHHHHHHHH--HHHHHTTCBSCCCCCEEBCSSTTCEECGGGC---------CCBSCCCHHHHHHHHHTTHHHHHHHHSSC
T ss_pred             CccHHHHHH--HHHHccCCCCcceeEEEecCCCccccccccc---------cccCccchhHhHHHHHHHHHHhhhhccce
Confidence            899999999  99998887766322    9999999999999         555544322                    


Q ss_pred             -ccc--------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhHHhHHhhhc
Q psy17692         89 -YCP--------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus        89 -~~~--------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa~~l~~~~~  158 (211)
                       |.+        ++|++|+++++|++ +++|+||+ +|+|+|+|++||++|+ +++++.|+++|++.|..|++.+++.++
T Consensus        71 ~~gia~a~~~iv~aIl~d~~~v~pvs~~l~geyG~-~dv~lsvP~vig~~Gv-ei~~l~L~~~E~~~l~~Sa~~ik~~i~  148 (152)
T d1ojua2          71 IFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRERLE  148 (152)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-EECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHhcCCCceeeeEEeccccCC-CCEEEEeEEEECCCce-EEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence             111        67899999999999 69999999 7999999999999998 589999999999999999999988876


Q ss_pred             cc
Q psy17692        159 SL  160 (211)
Q Consensus       159 sv  160 (211)
                      ++
T Consensus       149 ~l  150 (152)
T d1ojua2         149 EL  150 (152)
T ss_dssp             TT
T ss_pred             Hc
Confidence            54

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=8.5e-27  Score=186.04  Aligned_cols=119  Identities=30%  Similarity=0.426  Sum_probs=106.2

Q ss_pred             cCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc-----------
Q psy17692         29 SGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP-----------   91 (211)
Q Consensus        29 ~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~-----------   91 (211)
                      +|  |+||++||+  ++||+++|++|.+|      +||++|+|+||++         +++|.|+..+.+           
T Consensus         1 tG--T~LD~~R~~--~~vA~~l~v~~~~V~~~ViG~Hs~~~ip~~s~~---------~v~g~~~~~~~~~~~~~~~~~~~   67 (172)
T d2ldxa2           1 SG--CNLDSARFR--YLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGV---------NVAGVTLKSLNPAIGTDKNKQHW   67 (172)
T ss_dssp             CT--THHHHHHHH--HHHHHHHTCCTTSSCCCEEECSSSCEEECGGGC---------BSSCSSSSBSTTTCSCSSSSSSC
T ss_pred             CC--chHHHHHHH--HHHHHHhCcCHHHcEEEEEcCCCCccccceecc---------eecCcchhhHHHHhhhhhhhhhh
Confidence            57  999999999  99999999999999      9999999999999         888888876643           


Q ss_pred             ---------------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCC
Q psy17692         92 ---------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQP  137 (211)
Q Consensus        92 ---------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~i  137 (211)
                                                       .++..+.+.+++++ ++.|+||+.+++|+|+|+++|++|+.+++++.
T Consensus        68 ~~i~~~~~~~~~~~~~~k~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l~  147 (172)
T d2ldxa2          68 KNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVN  147 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECCC
T ss_pred             hhhhhhhccceeehhhcccchhHHHHHHHhHHHHhhcCCCccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecCC
Confidence                                             23455667788887 68899999779999999999999999999999


Q ss_pred             CCHHHHHHHHhhHHhHHhhhccc
Q psy17692        138 LTQEEIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       138 LsdeE~~iL~~Sa~~l~~~~~sv  160 (211)
                      |+|+|++.|..|++.+++..+++
T Consensus       148 L~~~E~~~l~~s~~~lk~~~k~l  170 (172)
T d2ldxa2         148 MTAEEEGLLKKSADTLWNMQKNL  170 (172)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998877654

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.93  E-value=1.3e-27  Score=192.34  Aligned_cols=116  Identities=20%  Similarity=0.356  Sum_probs=103.9

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+|||  ++||+++|++|.+|      |||++|+|+||++         +++|.|+..+..               
T Consensus         2 c~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~S~~---------~i~g~~l~~~~~~~~~~~~~~~~~~~~   70 (174)
T d1pzga2           2 CMLDSGRFR--RYVADALSVSPRDVQATVIGTHGDCMVPLVRYI---------TVNGYPIQKFIKDGVVTEKQLEEIAEH   70 (174)
T ss_dssp             HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------EETTEEHHHHHHTTSSCHHHHHHHHHH
T ss_pred             cccHHHHHH--HHHHHHhCcCHHHcEEEEEccCCCccccceeee---------eECCEechhhccccchhhhhhhhhhhe
Confidence            899999999  99999999999999      9999999999999         888888766542               


Q ss_pred             -----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHH
Q psy17692         92 -----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQE  141 (211)
Q Consensus        92 -----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsde  141 (211)
                                                   +.+.+|++++++++ +++|+||+ +++|+|+|++||++|+..++++.|+++
T Consensus        71 ~~~~g~~~~~~~~~gst~~~~a~a~~~~~~~i~~~~~~~~~~s~~~~~~yGi-~~v~~s~Pv~ig~~Gi~~v~~l~l~~~  149 (174)
T d1pzga2          71 TKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIERVIELELNEE  149 (174)
T ss_dssp             HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHH
T ss_pred             eeccceeEeeeecccchhhhhHHHHHHHHHhhcccCCceEEeeeccccccCC-CCceeeeeeEEcCCcEEEEeCCCCCHH
Confidence                                         34677888899998 58899999 699999999999999999999999999


Q ss_pred             HHHHHHhhHHhHHhhhccc
Q psy17692        142 EIEKLKKSAQAIKEVFLSL  160 (211)
Q Consensus       142 E~~iL~~Sa~~l~~~~~sv  160 (211)
                      |++.|..|++.+++..+++
T Consensus       150 E~~~l~~s~~~l~~~~~~v  168 (174)
T d1pzga2         150 EKKQFQKSVDDVMALNKAV  168 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999998887766544

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.93  E-value=2.7e-27  Score=194.24  Aligned_cols=123  Identities=12%  Similarity=0.055  Sum_probs=104.3

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccccCcccccccc--------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP--------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~--------------   91 (211)
                      |.|||+|||  ++||+++|++|++|       |||++|||+||++         +++|.|+.+++.              
T Consensus         1 T~LDs~R~r--~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a---------~v~g~~l~~~~~~~~~~~~~~~~~v~   69 (188)
T d7mdha2           1 TRLDENRAK--CQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA---------KIDGRPVKEVIKRTKWLEEEFTITVQ   69 (188)
T ss_dssp             CHHHHHHHH--HHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSC---------EETTEEGGGTCCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHH--HHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeecc---------EeeccchhhcccchhhhHHHHHHHHh
Confidence            789999999  99999999999999       9999999999999         899999888775              


Q ss_pred             --------------------------chhhccCCce--eEeE-eecCc-cccccceEeeeceEEecceEEEEe-cCCCCH
Q psy17692         92 --------------------------EIEDREQDRR--KPAI-HLLGH-HGIEEEVFLSLPCVMADNGVTHIV-NQPLTQ  140 (211)
Q Consensus        92 --------------------------~~i~~d~~~i--~~vs-~l~G~-yGi~~dV~~s~P~vig~~GV~~Iv-e~iLsd  140 (211)
                                                +++.++++.+  +++. +.+|+ ||+.+|+|+|+||+||++|+.+++ ++.|++
T Consensus        70 ~~~~~ii~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~  149 (188)
T d7mdha2          70 KRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDD  149 (188)
T ss_dssp             THHHHHHHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCH
T ss_pred             hhHHHHHHhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCH
Confidence                                      2456666554  4444 57884 999779999999999999999997 699999


Q ss_pred             HHHHHHHhhHHhHHhhhcccceeecC
Q psy17692        141 EEIEKLKKSAQAIKEVFLSLPCVMAD  166 (211)
Q Consensus       141 eE~~iL~~Sa~~l~~~~~svP~vlg~  166 (211)
                      +|+++|..|++.++...+.+-.++|+
T Consensus       150 ~e~~~l~~S~~eL~~e~~~v~~Llg~  175 (188)
T d7mdha2         150 FLWERIKKSEAELLAEKKCVAHLTGE  175 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999998887666655555554

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=5.2e-27  Score=188.09  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=103.7

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+||+  ++||+++|++|.+|      +||++|+|+||++         +++|.|+..++.               
T Consensus         2 T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~---------~v~g~~~~~~~~~~~~~~~~~~~~~~~   70 (172)
T d1a5za2           2 TVLDTARLR--TLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGA---------MIGGIPLQNMCQVCQKCDSKILENFAE   70 (172)
T ss_dssp             THHHHHHHH--HHHHHHHTCCGGGEECCEEBCSSTTCEECGGGC---------EETTEEHHHHHTTSSSCCHHHHHHHHH
T ss_pred             CchHHHHHH--HHHHHHHCcCHHHeEEEEEecCCCCcccchhhc---------ccCCcchhhhhhccccccHHHhhhhHH
Confidence            999999999  99999999999999      9999999999999         888888765543               


Q ss_pred             ----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHH
Q psy17692         92 ----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEE  142 (211)
Q Consensus        92 ----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE  142 (211)
                                                  .++..+++.+.+++ +++|+||+ +++|+|+||+||++|+.+++++.|+++|
T Consensus        71 ~~~~~~~~i~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~v~~s~P~~lg~~Gv~~v~~l~Ls~~E  149 (172)
T d1a5za2          71 KTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILELNLNEEE  149 (172)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECCCCCCHHH
T ss_pred             HHhccceeEeeccccchhhHHHHHHHHHHHHHhhcccceeeeccccccccc-CCeeEeeeEEEcCCceEEEeCCCCCHHH
Confidence                                        23456667788887 68899999 7999999999999999999999999999


Q ss_pred             HHHHHhhHHhHHhhhcccc
Q psy17692        143 IEKLKKSAQAIKEVFLSLP  161 (211)
Q Consensus       143 ~~iL~~Sa~~l~~~~~svP  161 (211)
                      ++.|..|++.+++.++.+.
T Consensus       150 ~~~l~~sa~~lk~~i~~l~  168 (172)
T d1a5za2         150 LEAFRKSASILKNAINEIT  168 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999988888776654

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.93  E-value=1e-26  Score=185.82  Aligned_cols=115  Identities=19%  Similarity=0.394  Sum_probs=104.4

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+|||  ++||+++|++|.+|      +||++|||+||++         +++|.|+.++..               
T Consensus         2 g~LD~~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~---------~i~g~~~~~~~~~~~~~~~~~~v~~~g   70 (164)
T d1uxja2           2 GVLDAARYR--TFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFS---------TISGIPVSEFIAPDRLAQIVERTRKGG   70 (164)
T ss_dssp             HHHHHHHHH--HHHHHHHTCCGGGEEECCEECSGGGEECCGGGE---------EETTEEGGGTSCHHHHHHHHHHHHTHH
T ss_pred             cccHHHHHH--HHHHHHHCcCHHHeEEEEEcCCCCceeeeeeee---------ecCCCchhhccchhhHHHHHHHHHHHH
Confidence            689999999  99999999999999      9999999999999         888888876654               


Q ss_pred             ------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHH
Q psy17692         92 ------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKL  146 (211)
Q Consensus        92 ------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL  146 (211)
                                              +++.+++++++|++ +++|+||+ +++|+|+|++||++|+.+++++.|+++|++.|
T Consensus        71 ~~ii~~~~kgs~~~a~a~a~~~i~~~i~~~~~~~~~~~~~~~g~ygi-~~~~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l  149 (164)
T d1uxja2          71 GEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILELPLNEEEMALL  149 (164)
T ss_dssp             HHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHH
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHHHhCCCCceeeeeeeeccccCC-CCceEEECeEEeCCeeEEEeCCCCCHHHHHHH
Confidence                                    35677888899988 69999999 79999999999999999999999999999999


Q ss_pred             HhhHHhHHhhhcc
Q psy17692        147 KKSAQAIKEVFLS  159 (211)
Q Consensus       147 ~~Sa~~l~~~~~s  159 (211)
                      ..|++.+++.++.
T Consensus       150 ~~s~~~lk~~i~~  162 (164)
T d1uxja2         150 NASAKAVRATLDT  162 (164)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888877654

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.93  E-value=1.5e-26  Score=185.49  Aligned_cols=115  Identities=24%  Similarity=0.363  Sum_probs=103.3

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |.|||+||+  ++||+++|+++++|      +||++|||+||++         +++|.|+..++.               
T Consensus         1 T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~---------~v~g~~~~~~~~~~~~~~~~~~~~~~i   69 (170)
T d1llda2           1 TNLDSARLR--FLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESA---------TIGGVPMSDWTPLPGHDPLDADKREEI   69 (170)
T ss_dssp             THHHHHHHH--HHHHHHHTCCGGGEECCEEBSSSTTCEECTTSC---------EETTEEGGGCCCCTTCCCCCHHHHHHH
T ss_pred             CchHHHHHH--HHHHHHHCcCHHHeEEEEEcCCCCCcccchhhc---------ccCCCchhhhcccccccccchhhHHHH
Confidence            789999999  99999999999999      9999999999999         888888876543               


Q ss_pred             ------------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCH
Q psy17692         92 ------------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQ  140 (211)
Q Consensus        92 ------------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsd  140 (211)
                                                    +++.+++..+++++ +++|+||+ +|+|+|+|++||++|+.+++++.|++
T Consensus        70 ~~~v~~~g~~i~~~kg~t~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~i~~s~P~~lg~~Gv~~i~~l~L~~  148 (170)
T d1llda2          70 HQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTINTPVSD  148 (170)
T ss_dssp             HHHHHHHHHHHHTSCCSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCSCCCCCH
T ss_pred             HHHHhhhhhHHHhhhccchhhhHHHHHHHHHHHHcCCCceeeeeccccCccCC-CCeeEeeccEEcCCeeEEEecCCCCH
Confidence                                          24566777888888 68999999 79999999999999999999999999


Q ss_pred             HHHHHHHhhHHhHHhhhcc
Q psy17692        141 EEIEKLKKSAQAIKEVFLS  159 (211)
Q Consensus       141 eE~~iL~~Sa~~l~~~~~s  159 (211)
                      +|++.|..|++.+++.+..
T Consensus       149 ~E~~~l~~sa~~lk~~~~~  167 (170)
T d1llda2         149 KELAALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999988887653

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.93  E-value=9.8e-27  Score=185.93  Aligned_cols=115  Identities=22%  Similarity=0.323  Sum_probs=103.9

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      ++|||+||+  ++||+++|++|++|      +||++|+|+||++         +++|.|+.++.+               
T Consensus         2 g~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~s~vp~~s~~---------~i~g~~~~~~~~~~~~~~~~~~v~~~g   70 (163)
T d1guza2           2 GVLDAARFR--SFIAMELGVSMQDINACVLGGHGDAMVPVVKYT---------TVAGIPISDLLPAETIDKLVERTRNGG   70 (163)
T ss_dssp             HHHHHHHHH--HHHHHHHTCCGGGEECCEEECSGGGEEECGGGC---------EETTEEHHHHSCHHHHHHHHHHHHTHH
T ss_pred             cccHHHHHH--HHHHHHHCcCHHHeEEEEEcCCCCCcccCHhhc---------ccCCccccccCCHHHHHHHHHHHHHHH
Confidence            689999999  99999999999999      9999999999999         888888877654               


Q ss_pred             ------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHH
Q psy17692         92 ------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKL  146 (211)
Q Consensus        92 ------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL  146 (211)
                                              +.+..+++.++|++ +++|+||+ +|+|+|+|++||++|+.+++++.|+|+|++.|
T Consensus        71 ~~ii~~~~kgsa~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~~s~P~~lg~~Gv~~i~~l~Ls~~E~~~l  149 (163)
T d1guza2          71 AEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYEINLDQADLDLL  149 (163)
T ss_dssp             HHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHH
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHheeccCCCEEEEeeeeccccCC-CCcEEEEeeEEcCCeeEEEecCCCCHHHHHHH
Confidence                                    34566778889988 68999999 79999999999999999999999999999999


Q ss_pred             HhhHHhHHhhhcc
Q psy17692        147 KKSAQAIKEVFLS  159 (211)
Q Consensus       147 ~~Sa~~l~~~~~s  159 (211)
                      ..|++.+++.++.
T Consensus       150 ~~sa~~l~~~i~~  162 (163)
T d1guza2         150 QKSAKIVDENCKM  162 (163)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999888877653

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.92  E-value=3.3e-26  Score=185.36  Aligned_cols=115  Identities=12%  Similarity=0.049  Sum_probs=97.2

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccccCcccccccc--------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP--------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~--------------   91 (211)
                      |+|||+|||  ++||+++|++|++|       |||++|||+||++         +++|.|+..++.              
T Consensus         1 T~LDs~R~r--~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a---------~v~g~~~~~~~~~~~~~~~~~~~~i~   69 (179)
T d5mdha2           1 TRLDHNRAK--AQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHA---------KVKLQAKEVGVYEAVKDDSWLKGEFI   69 (179)
T ss_dssp             CHHHHHHHH--HHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTC---------EEECSSCEEEHHHHHCCHHHHHTHHH
T ss_pred             CccHHHHHH--HHHHHHHCcCHHHcEEEEEEEcCCCcccccchhc---------eecCcchhhhhhhccccchhhHHHHH
Confidence            789999999  99999999999999       9999999999999         888888766543              


Q ss_pred             ------------------------------chhhccCCceeE--eE-eecC-ccccccceEeeeceEEecceEEEEecCC
Q psy17692         92 ------------------------------EIEDREQDRRKP--AI-HLLG-HHGIEEEVFLSLPCVMADNGVTHIVNQP  137 (211)
Q Consensus        92 ------------------------------~~i~~d~~~i~~--vs-~l~G-~yGi~~dV~~s~P~vig~~GV~~Ive~i  137 (211)
                                                    +++.++.+...+  +. +.+| +||+.+|+|+|+|+++|+.|+..++++.
T Consensus        70 ~~~~~~~~~i~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l~  149 (179)
T d5mdha2          70 TTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLP  149 (179)
T ss_dssp             HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCCC
T ss_pred             HHHHhccHhhhhccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCCC
Confidence                                          234444444444  33 4676 8999889999999999999999999999


Q ss_pred             CCHHHHHHHHhhHHhHHhhhc
Q psy17692        138 LTQEEIEKLKKSAQAIKEVFL  158 (211)
Q Consensus       138 LsdeE~~iL~~Sa~~l~~~~~  158 (211)
                      |+++|+++|..|++.+++..+
T Consensus       150 L~~~E~~~l~~Sa~~L~~~~~  170 (179)
T d5mdha2         150 INDFSREKMDLTAKELAEEKE  170 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987766544

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=9.5e-26  Score=179.44  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=100.9

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+||+  ++||+++|+++.+|      +||++|+|+||++         +++|.|+..++.               
T Consensus         1 T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~---------~v~~~~~~~~~~~~~~~~~~~~~~i~~   69 (168)
T d1ldna2           1 TILDTARFR--FLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQA---------YIGVMPIRKLVESKGEEAQKDLERIFV   69 (168)
T ss_dssp             THHHHHHHH--HHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEE---------EETTEESTTTSGGGTTTHHHHHHHHHH
T ss_pred             CccHHHHHH--HHHHHHhCcCHHHeEEEEEcCCCCccccchhhc---------ccCCcchhhhhhhhhhhhccchhhhhh
Confidence            789999999  99999999999999      9999999999999         888888776553               


Q ss_pred             ----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHH
Q psy17692         92 ----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEE  142 (211)
Q Consensus        92 ----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE  142 (211)
                                                  +.+..+.+.+++++ ++.++||+ +|+|+|+||++|++|+..++++.|+++|
T Consensus        70 ~~~~~~~~v~~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~-~~v~~s~Pv~lg~~Gv~~v~~l~Ls~~E  148 (168)
T d1ldna2          70 NVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIEIELNDDE  148 (168)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEECCCCCCHHH
T ss_pred             hhhhhHHHHHHhhccccchHHHHHhhHHHhhhcccceeeeeeeeeccccCC-CCeeecceEEEcCCeEEEEeCCCCCHHH
Confidence                                        23455666788887 68889998 7999999999999999999999999999


Q ss_pred             HHHHHhhHHhHHhhhc
Q psy17692        143 IEKLKKSAQAIKEVFL  158 (211)
Q Consensus       143 ~~iL~~Sa~~l~~~~~  158 (211)
                      ++.|..|++.+++.++
T Consensus       149 ~~~L~~s~~~lk~~i~  164 (168)
T d1ldna2         149 KNRFHHSAATLKSVLA  164 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988887654

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.92  E-value=4.4e-26  Score=182.81  Aligned_cols=114  Identities=23%  Similarity=0.334  Sum_probs=100.4

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |.|||+||+  ++||+++|+++.+|      +||++|+|+||++         +++|.|+..++.               
T Consensus         1 T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~---------~i~g~~~~~~~~~~~~~~~~~~~~i~~   69 (172)
T d1llca2           1 TSLDTARFR--QSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHA---------NIGGVTIAEWVKAHPEIKEDKLVKMFE   69 (172)
T ss_dssp             THHHHHHHH--HHHHHHSCCCTTSCEEEEEBSSSSSCEEEEEEE---------ESTTCCSSSSSSCSCSSSSSSSSTTTT
T ss_pred             CchHHHHHH--HHHHHHhCcCHHHeEEEEEcCCCCcceeeeecc---------ccCCccHHHHHhhhhccchhHHHHHHH
Confidence            789999999  99999999999999      9999999999999         677777655432               


Q ss_pred             ----------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHH
Q psy17692         92 ----------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEE  142 (211)
Q Consensus        92 ----------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE  142 (211)
                                                  +.+..+...++|++ +++|+||+ +++|||+|+++|++|+.+++++.|+++|
T Consensus        70 ~~~~~~~~i~~~kg~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi-~~~~~s~P~~lg~~Gv~~i~~l~L~~~E  148 (172)
T d1llca2          70 DVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGI-NDLYIGTPAVINRNGIQNILEIPLTDHE  148 (172)
T ss_dssp             TTGGGTTTTSSSSSCTTHHHHHHHHHHHHHHHHTCCCCEECCCCCSSSSSC-CSSCCBCEEEEETTEEEEECCCCCTTHH
T ss_pred             hhcchHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCCccceeeeecCccCc-ccceEEEEEEEcCCceEEEecCCCCHHH
Confidence                                        23455667788888 68999999 7999999999999999999999999999


Q ss_pred             HHHHHhhHHhHHhhhc
Q psy17692        143 IEKLKKSAQAIKEVFL  158 (211)
Q Consensus       143 ~~iL~~Sa~~l~~~~~  158 (211)
                      ++.|..|++.+++..+
T Consensus       149 ~~~l~~s~~~lk~~i~  164 (172)
T d1llca2         149 EESMQKSASQLKKVLT  164 (172)
T ss_dssp             HHHHHTTTTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988887664

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.91  E-value=8e-26  Score=180.63  Aligned_cols=112  Identities=20%  Similarity=0.285  Sum_probs=98.5

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+||+  ++||+++|++|++|      +||++|+|+||++         +++|.|+..+..               
T Consensus         1 g~LD~~R~~--~~la~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~---------~i~g~~~~~~~~~~~~~~~~~~~~~~~   69 (165)
T d1t2da2           1 GVLDTSRLK--YYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYI---------TVGGIPLQEFINNKLISDAELEAIFDR   69 (165)
T ss_dssp             HHHHHHHHH--HHHHHHHTSCGGGEECCEEBCSSTTCEECGGGC---------EETTEEHHHHHHTTSSCHHHHHHHHHH
T ss_pred             CccHHHHHH--HHHHHHHCcCHHHeEEEEEcCCCCCcccceeec---------ccCCcchhhhcccchhhhhhhhhhhhh
Confidence            369999999  99999999999999      9999999999999         666666543321               


Q ss_pred             ---------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHH
Q psy17692         92 ---------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI  143 (211)
Q Consensus        92 ---------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~  143 (211)
                                                 +++..++++++|++ +++|+||+ +|+|+|+||+||++|+.+++++.|+++|+
T Consensus        70 ~~~~~~~v~~~~~~~~~a~a~a~~~~~~~i~~~~~~~~~~~v~~~g~yg~-~~v~~s~Pv~lg~~Gv~~i~~l~L~~~E~  148 (165)
T d1t2da2          70 TVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIELQLNSEEK  148 (165)
T ss_dssp             HHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHH
T ss_pred             hhhhhHHHhhhccceeechhHHHHHHHHHHhhccccceeeeecccccccc-CCeeEeeeEEEcCCceEEEeCCCCCHHHH
Confidence                                       35677888899988 79999999 79999999999999999999999999999


Q ss_pred             HHHHhhHHhHHhh
Q psy17692        144 EKLKKSAQAIKEV  156 (211)
Q Consensus       144 ~iL~~Sa~~l~~~  156 (211)
                      +.|..|++.+++.
T Consensus       149 ~~L~~s~~~lk~~  161 (165)
T d1t2da2         149 AKFDEAIAETKRM  161 (165)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999777765

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.91  E-value=1.2e-25  Score=179.96  Aligned_cols=114  Identities=19%  Similarity=0.339  Sum_probs=101.2

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |.||++||+  ++||+++|++|.+|      +||++|+|+||++         +++|.|+..+..               
T Consensus         1 T~LD~~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~---------~i~g~~~~~~~~~~~~~~~~~~~~~~~   69 (171)
T d1ez4a2           1 TSLDSSRLR--VALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTA---------TIGTRPVRDVAKEQGVSDDDLAKLEDG   69 (171)
T ss_dssp             THHHHHHHH--HHHHHHHTCCGGGEECCEESSSSSSCEECGGGC---------EETTEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CchHHHHHH--HHHHHHHCcCHHHeEEEEEccCCCccccccccc---------ccCCccceeecccccccchhhhhheee
Confidence            789999999  99999999999999      9999999999999         777777654332               


Q ss_pred             ---------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHH
Q psy17692         92 ---------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI  143 (211)
Q Consensus        92 ---------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~  143 (211)
                                                 +++..+...+++++ +++|+||+ +++|+|+|+++|++|+.+++++.|+++|+
T Consensus        70 ~~~~~~~i~~~k~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~~S~Pv~lg~~Gv~~v~~l~Ls~~E~  148 (171)
T d1ez4a2          70 VRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIESPLSADEL  148 (171)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHH
T ss_pred             hhhhhHHHHHhhhhHhHHHHHHHHHHHHHHhccCCceEEEEEeeccccCc-cceeeeEEEEEcCCcEEEEeCCCCCHHHH
Confidence                                       34667778899988 68999999 79999999999999999999999999999


Q ss_pred             HHHHhhHHhHHhhhc
Q psy17692        144 EKLKKSAQAIKEVFL  158 (211)
Q Consensus       144 ~iL~~Sa~~l~~~~~  158 (211)
                      +.|..|++.+++.++
T Consensus       149 ~~l~~s~~~l~~~i~  163 (171)
T d1ez4a2         149 KKMQDSAATLKKVLN  163 (171)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988877653

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.91  E-value=1.5e-25  Score=179.35  Aligned_cols=121  Identities=7%  Similarity=0.057  Sum_probs=104.8

Q ss_pred             cCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         34 IVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        34 ~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      .|||+|||  ++||+++|++|++|       |||++|+|+||.+         +++|.|+..+..               
T Consensus         2 ~LD~~R~r--~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~   70 (171)
T d1b8pa2           2 RLDHNRAL--SQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYA---------QIDGASVKDMINDDAWNRDTFLPTVGK   70 (171)
T ss_dssp             HHHHHHHH--HHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSC---------EETTEEHHHHHCCHHHHHHTHHHHHHT
T ss_pred             cchHHHHH--HHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecc---------eeecccchhhhhhhcchhhhHHHHHHH
Confidence            49999999  99999999999998       9999999999999         778877766543               


Q ss_pred             --------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHH
Q psy17692         92 --------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIE  144 (211)
Q Consensus        92 --------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~  144 (211)
                                                +.+..+.+.+++++ +.+|+||+.+++|||+||++|++|+..+.++.|+++|++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l~L~~~e~~  150 (171)
T d1b8pa2          71 RGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQE  150 (171)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhCCCccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCCCCCHHHHH
Confidence                                      23455667889988 689999997899999999999999999999999999999


Q ss_pred             HHHhhHHhHHhhhcccceeec
Q psy17692        145 KLKKSAQAIKEVFLSLPCVMA  165 (211)
Q Consensus       145 iL~~Sa~~l~~~~~svP~vlg  165 (211)
                      +|..|++.+++..+++--+||
T Consensus       151 ~l~~s~~~L~~e~~~v~~ll~  171 (171)
T d1b8pa2         151 RINVTLNELLEEQNGVQHLLG  171 (171)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999999888777666554443

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.8e-25  Score=178.18  Aligned_cols=115  Identities=9%  Similarity=0.038  Sum_probs=100.4

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc-------cCCCceeeeccccccccccccccccCcccccccc--------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV-------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP--------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V-------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~--------------   91 (211)
                      |.|||+|||  ++||+++|++|++|       |||++|+|+||++         +++|.|+.++..              
T Consensus         2 T~LDs~R~r--~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~---------~v~g~~~~~~~~~~~~~~~~~~~~~~   70 (173)
T d1y7ta2           2 TRLDHNRAK--AQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHA---------EVDGRPALELVDMEWYEKVFIPTVAQ   70 (173)
T ss_dssp             CHHHHHHHH--HHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSC---------EETTEEGGGTSCHHHHHHTHHHHHHH
T ss_pred             ChhHHHHHH--HHHHHHHCcCHHHcEEEEEEEecCccEEeeeeee---------eEcCccHHHhcccccccchhhhhhhh
Confidence            899999999  99999999999998       9999999999999         899999887754              


Q ss_pred             -------------------------chh--hccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHH
Q psy17692         92 -------------------------EIE--DREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEI  143 (211)
Q Consensus        92 -------------------------~~i--~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~  143 (211)
                                               .++  ..|+++++|++ +++|+||+.+++|+|+|++++..|+..+.++.|+++|+
T Consensus        71 ~~~~~~~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l~L~~~E~  150 (173)
T d1y7ta2          71 RGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFAR  150 (173)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHH
T ss_pred             hHHHHHHHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCCCCCHHHH
Confidence                                     112  23567899998 68999999789999999998887787777899999999


Q ss_pred             HHHHhhHHhHHhhhc
Q psy17692        144 EKLKKSAQAIKEVFL  158 (211)
Q Consensus       144 ~iL~~Sa~~l~~~~~  158 (211)
                      ++|..|++.+++..+
T Consensus       151 ~~l~~s~~~L~~~~e  165 (173)
T d1y7ta2         151 KRMEITAQELLDEME  165 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999987766554

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.91  E-value=5e-25  Score=173.67  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=100.3

Q ss_pred             cCCCCcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc-----------
Q psy17692         29 SGKNCIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP-----------   91 (211)
Q Consensus        29 ~g~~t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~-----------   91 (211)
                      +|  |+|||+||+  ++||+++|+++++|      +||++|+|+||++         ++++.|......           
T Consensus         1 ~G--t~LD~~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~---------~v~~~~~~~~~~~~~~~~~~~~~   67 (161)
T d1o6za2           1 FG--GRLDSARFR--YVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKV---------SVDGTDPEFSGDEKEQLLGDLQE   67 (161)
T ss_dssp             CC--HHHHHHHHH--HHHHHHHTCCGGGEECCEEECSSTTEEECGGGC---------EETTBCCCCCHHHHHHHHHHHHH
T ss_pred             CC--chHHHHHHH--HHHHHHHCcCHHHeEEEEEeCCCCceeeehhhh---------cccccccccchHHHHHHHHHhhh
Confidence            47  899999999  99999999999999      9999999999999         666665433222           


Q ss_pred             ------------------------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHH
Q psy17692         92 ------------------------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKL  146 (211)
Q Consensus        92 ------------------------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL  146 (211)
                                              ..+..+....++++ ++.++||+ +|+|+|+||++|++|+.+++++.|+|+|+++|
T Consensus        68 ~~~~i~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~S~Pv~ig~~Gv~~v~~l~l~~~E~~~L  146 (161)
T d1o6za2          68 SAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLM  146 (161)
T ss_dssp             HHHHHHTTTSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHH
T ss_pred             hHHHHHHhhhhhhhHHHHhhHhhhHhhhhccccceeecccccccccc-cCceeeeeeEEcCCCEEEEeCCCCCHHHHHHH
Confidence                                    23556667777777 68889998 79999999999999999999999999999999


Q ss_pred             HhhHHhHHhhhcc
Q psy17692        147 KKSAQAIKEVFLS  159 (211)
Q Consensus       147 ~~Sa~~l~~~~~s  159 (211)
                      ..|++.+++.++.
T Consensus       147 ~~s~~~L~~~~~~  159 (161)
T d1o6za2         147 ADAAEKLSDQYDK  159 (161)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888876653

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.90  E-value=2.4e-24  Score=171.16  Aligned_cols=111  Identities=20%  Similarity=0.209  Sum_probs=91.6

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeeccccccccccccccccCcccccccc---------------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSSRKNCIVPKELYCP---------------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~~~v~g~pv~~~~~---------------   91 (211)
                      |+|||+||+  ++||+++|++|.+|      +||++|||+||++         +++|.|+..+..               
T Consensus         2 T~LDs~R~~--~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~---------~v~g~~~~~~~~~~~~~~~~i~~~v~~   70 (163)
T d1hyha2           2 TLLDTARMQ--RAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTV---------RVMGQPIVTLADAGDIDLAAIEEEARK   70 (163)
T ss_dssp             THHHHHHHH--HHHHHHHTCCGGGCBCCEEBCTTTTCEECTTTC---------EETTEEGGGC-----CCHHHHHHHHHH
T ss_pred             CchHHHHHH--HHHHHHhCcCHHHeEEEEEcCCCCcCccceecc---------ccCCchHHHHhccccchHHHHHHHHhh
Confidence            999999999  99999999999999      9999999999999         999999987664               


Q ss_pred             ------------------------chhhccCCceeEeEeecCccccccceEeeeceEEecceEEEEecCCCCHHHHHHHH
Q psy17692         92 ------------------------EIEDREQDRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLK  147 (211)
Q Consensus        92 ------------------------~~i~~d~~~i~~vs~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~  147 (211)
                                              +++..++..+.+++.   +|+. +++|+|+||+||++|+.+++++.|+|+|+++|.
T Consensus        71 ~~~~i~~~kg~~~~~~a~~~~~~~~~~~~~~~~~~~~s~---~~~~-~~~~~s~Pv~ig~~Gv~~v~~l~Ls~~E~~~l~  146 (163)
T d1hyha2          71 GGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSN---RRDD-MGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLL  146 (163)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEE---ECTT-TCSEEEEEEEEETTEEEEECCCCCCHHHHHHHH
T ss_pred             hHHHHHHHHHhHHHhHHHHhhHHHHHhcCCccceeeece---ecCC-cceEEEeEEEEcCCeEEEEecCCCCHHHHHHHH
Confidence                                    123444455555552   2343 578999999999999999999999999999999


Q ss_pred             hhHHhHHhhhc
Q psy17692        148 KSAQAIKEVFL  158 (211)
Q Consensus       148 ~Sa~~l~~~~~  158 (211)
                      .|++.+++.++
T Consensus       147 ~s~~~l~~~~~  157 (163)
T d1hyha2         147 QSRDYIQQRFD  157 (163)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99987776654

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.82  E-value=1.7e-21  Score=155.51  Aligned_cols=112  Identities=10%  Similarity=0.020  Sum_probs=78.1

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cC-CCceeeeccccccccccccccccCcccc----cccc----------
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SS-GKSCIVRKELYRPERTVSSRKNCIVPKE----LYCP----------   91 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eH-Gds~vp~~S~~~i~~~il~~~v~g~pv~----~~~~----------   91 (211)
                      |.|||+|||  ++||+++|++|++|      || |++|+|.||.+         .+++.+..    .+..          
T Consensus         2 T~LDs~R~~--~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~---------~~~~~~~~~~~~~l~~~v~~~~~eii   70 (169)
T d1mlda2           2 TTLDIVRAN--AFVAELKGLDPARVSVPVIGGHAGKTIIPLISQC---------TPKVDFPQDQLSTLTGRIQEAGTEVV   70 (169)
T ss_dssp             CHHHHHHHH--HHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGC---------BSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHH--HHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhh---------ccCCCCcHHHHHHHHHHHHHhHHHHH
Confidence            889999999  99999999999999      88 55555666666         22221111    0000          


Q ss_pred             ---------------------chhhccC---CceeEeEeecCccccccceEeeeceEEecceEEEEecC-CCCHHHHHHH
Q psy17692         92 ---------------------EIEDREQ---DRRKPAIHLLGHHGIEEEVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKL  146 (211)
Q Consensus        92 ---------------------~~i~~d~---~~i~~vs~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~-iLsdeE~~iL  146 (211)
                                           ..+.++.   ..+.+++  .+.||+.+|+|+|+||+||++|+.++++. .|+++|++.|
T Consensus        71 ~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~--~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l  148 (169)
T d1mlda2          71 KAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECS--FVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMI  148 (169)
T ss_dssp             HHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEE--EEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHH
T ss_pred             HhhcCcChHhHHHHHHHHHHHHHhccccCCceEEEEEe--eccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHH
Confidence                                 1122222   2233333  23444436899999999999999999998 6999999999


Q ss_pred             HhhHHhHHhhh
Q psy17692        147 KKSAQAIKEVF  157 (211)
Q Consensus       147 ~~Sa~~l~~~~  157 (211)
                      ..|++.+++.+
T Consensus       149 ~~s~~~lk~~I  159 (169)
T d1mlda2         149 AEAIPELKASI  159 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998777644

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.3e-20  Score=149.79  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=88.0

Q ss_pred             CcCcccCccchhhhhhhhCCCCCCc------cCCCceeeecccccccccccc--------c----------cccCccccc
Q psy17692         33 CIVPKELFRPERTVSSRKNRPKRTV------SSGKSCIVRKELYRPERTVSS--------R----------KNCIVPKEL   88 (211)
Q Consensus        33 t~LDs~R~~~~~~la~~~~v~~~~V------eHGds~vp~~S~~~i~~~il~--------~----------~v~g~pv~~   88 (211)
                      |.|||+|||  ++||+++|++|++|      |||++++++|+..........        +          ...|.....
T Consensus         2 T~LDs~R~~--~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           2 TTLDIIRSN--TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CHHHHHHHH--HHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             cccHHHHHH--HHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccCCCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            889999999  99999999999999      998888877754411000000        0          001111111


Q ss_pred             ccc--------chhhccCCceeEeE-eecCccccccceEeeeceEEecceEEEEecC-CCCHHHHHHHHhhHHhHHhhh
Q psy17692         89 YCP--------EIEDREQDRRKPAI-HLLGHHGIEEEVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKEVF  157 (211)
Q Consensus        89 ~~~--------~~i~~d~~~i~~vs-~l~G~yGi~~dV~~s~P~vig~~GV~~Ive~-iLsdeE~~iL~~Sa~~l~~~~  157 (211)
                      +..        +.+.++.+...+++ ...++||...++|+|+||+||++|+.+++++ .|+|+|++.|..|++.++..+
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I  158 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDI  158 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            111        34566666666666 4566777657899999999999999999998 699999999999998877654

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.21  E-value=6.7e-14  Score=110.25  Aligned_cols=80  Identities=24%  Similarity=0.331  Sum_probs=68.5

Q ss_pred             ceeEeEeecC--ccccccceEeeeceEEecceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEE
Q psy17692        100 RRKPAIHLLG--HHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHI  172 (211)
Q Consensus       100 ~i~~vs~l~G--~yGi~~dV~~s~P~vig~~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~i  172 (211)
                      ....+...+|  .||++             .++.+|++++|.|+ ++.+|+|+  ++.|+.   +-|+|++||++|++ +
T Consensus        59 ~g~eIi~~kG~t~~gia-------------~a~~~iv~aIl~d~-~~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i  123 (152)
T d1ojua2          59 VAAEVIKRKGATIFGPA-------------VAIYRMVKAVVEDT-GEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-V  123 (152)
T ss_dssp             THHHHHHHHSSCCHHHH-------------HHHHHHHHHHHTTC-CCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-E
T ss_pred             HHHHhhhhccceeccHH-------------HHHHHHHHHHHhcC-CCceeeeEEeccccCCCCEEEEeEEEECCCceE-E
Confidence            3444444667  68998             89999999999997 89999998  777765   44999999999996 8


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHh
Q psy17692        173 VNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       173 i~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ++++||++|+++|++||+.||+
T Consensus       124 ~~l~L~~~E~~~l~~Sa~~ik~  145 (152)
T d1ojua2         124 ADIKLSDEEIEKLRNSAKILRE  145 (152)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999976

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.77  E-value=4e-11  Score=94.26  Aligned_cols=66  Identities=23%  Similarity=0.453  Sum_probs=58.0

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.+++++++.++ +..++.|+  ++.|++   +-++|++||++||+++++++||++|+++|++||+.||+
T Consensus        88 ~a~~~i~~~i~~~~-~~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~lk~  158 (164)
T d1uxja2          88 AATAQMVEAVLKDK-KRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRA  158 (164)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            77888999999987 67888887  666664   34999999999999999999999999999999999986

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.67  E-value=1.4e-10  Score=91.66  Aligned_cols=66  Identities=20%  Similarity=0.364  Sum_probs=57.0

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++++++++ +..+++|+  ++.|++   +-|+|++||++||+++++++||++|+++|++|++.|++
T Consensus        93 ~a~~~~~~~i~~~~-~~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l~l~~~E~~~l~~s~~~l~~  163 (174)
T d1pzga2          93 ASAVAMATSFLNDE-KRVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMA  163 (174)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccC-CceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            67777888888887 68888887  556665   44999999999999999999999999999999999875

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.66  E-value=1e-10  Score=92.07  Aligned_cols=66  Identities=26%  Similarity=0.357  Sum_probs=55.9

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+..++++++.++ +..+++++  ++.|+.   +-|+|+++|++||+++++++||++|+++|++||+.||+
T Consensus        92 ~~~~~~~~~i~~~~-~~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l~Ls~~E~~~l~~s~~~lk~  162 (169)
T d1y6ja2          92 VSINTIVETLLKNQ-NTIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKK  162 (169)
T ss_dssp             HHHHHHHHHHHHTC-CCEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-CCceeeeeeeccccCCcccceeeeeEEcCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            55666778888776 67788887  666664   34999999999999999999999999999999999986

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.62  E-value=2.5e-10  Score=89.56  Aligned_cols=66  Identities=23%  Similarity=0.374  Sum_probs=54.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.+++.+++.++ +..++.|+  ++.|+.   +-|+|++||++|++++++++||++|+++|++||+.||+
T Consensus        88 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l~Ls~~E~~~l~~sa~~l~~  158 (163)
T d1guza2          88 SSVVEMVESIVLDR-KRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDE  158 (163)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHheeccC-CCEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            55566778888877 57777776  444543   44999999999999999999999999999999999975

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.58  E-value=3.1e-10  Score=89.12  Aligned_cols=66  Identities=29%  Similarity=0.455  Sum_probs=56.0

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhhh----cccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEVF----LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~~----~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+.+++++++.++ +..++.++  ++.|++.    -|+|+++|++||+++++++||++|+++|++||+.||+
T Consensus        94 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l~L~~~E~~~l~~Sa~~l~~  165 (172)
T d1i0za2          94 LSVADLIESMLKNL-SRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWD  165 (172)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            55666778888886 67888887  6667653    3999999999999999999999999999999999975

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.58  E-value=1.1e-09  Score=85.89  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHhc
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKIR  195 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~~  195 (211)
                      ..+..++++++.+. +..+++|+  ++.|+.   +-|+|++||++||+++++++||++|+++|++|++.||+.
T Consensus        90 ~a~~~~~~~i~~~~-~~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l~L~~~E~~~L~~s~~~lk~~  161 (165)
T d1t2da2          90 AAIIEMAESYLKDL-KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRM  161 (165)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcc-ccceeeeeccccccccCCeeEeeeEEEcCCceEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            45666777777777 57777777  555554   459999999999999999999999999999999999863

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=98.54  E-value=7.6e-10  Score=86.47  Aligned_cols=66  Identities=29%  Similarity=0.444  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++..++.+++.++ ...++.++  ++.|+.    +-|+|+++|++||+++++++||++|+++|++||+.||+
T Consensus        91 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~  162 (169)
T d1ldma2          91 LSVADLAETIMKNL-CRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWD  162 (169)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhheecCCC-CceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            44555667777776 56777666  566654    34999999999999999999999999999999998864

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.51  E-value=1.9e-08  Score=78.37  Aligned_cols=40  Identities=30%  Similarity=0.561  Sum_probs=37.1

Q ss_pred             hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        155 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       155 ~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +++-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus       121 ~v~~s~Pv~lg~~Gv~~i~~l~Ls~~E~~~l~~Sa~~lk~  160 (168)
T d1hyea2         121 DVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK  160 (168)
T ss_dssp             EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEeeceEEcCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            3455999999999999999999999999999999999986

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=8.2e-08  Score=74.35  Aligned_cols=38  Identities=24%  Similarity=0.593  Sum_probs=35.9

Q ss_pred             hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        157 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       157 ~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +-|+|++||++||+.+++++||++|+++|++||+.||+
T Consensus       124 ~~s~Pv~lg~~Gv~~v~~l~Ls~~E~~~L~~s~~~lk~  161 (168)
T d1ldna2         124 YIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKS  161 (168)
T ss_dssp             EEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eecceEEEcCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            34999999999999999999999999999999999986

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.39  E-value=4.7e-08  Score=76.40  Aligned_cols=66  Identities=24%  Similarity=0.455  Sum_probs=49.8

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHH---hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIK---EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~---~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ..+..++++++.++ ...++.|+  ++.|   +++-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus        93 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l~L~~~E~~~l~~sa~~lk~  163 (170)
T d1llda2          93 MSGVDIIEAVLHDT-NRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKE  163 (170)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            44445555555555 45555554  3333   3344999999999999999999999999999999999975

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.37  E-value=9.8e-08  Score=74.42  Aligned_cols=39  Identities=13%  Similarity=0.306  Sum_probs=35.8

Q ss_pred             hhcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        156 VFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       156 ~~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      ++.|+|++||++|+++++++ +||++|+++|++||+.||.
T Consensus       118 v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~  157 (169)
T d1mlda2         118 PYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA  157 (169)
T ss_dssp             SEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred             EeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            34599999999999999998 6999999999999999884

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=7.8e-08  Score=75.03  Aligned_cols=38  Identities=34%  Similarity=0.595  Sum_probs=36.0

Q ss_pred             hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        157 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       157 ~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +-|+|++||++||+++++++||++|+++|++||+.||+
T Consensus       125 ~~s~P~~lg~~Gv~~v~~l~Ls~~E~~~l~~sa~~lk~  162 (172)
T d1a5za2         125 CISVPVTLGKHGVERILELNLNEEELEAFRKSASILKN  162 (172)
T ss_dssp             EEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eEeeeEEEcCCceEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            44999999999999999999999999999999999986

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.36  E-value=1.1e-07  Score=73.54  Aligned_cols=40  Identities=33%  Similarity=0.473  Sum_probs=36.9

Q ss_pred             hhhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        155 EVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       155 ~~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +.+-|+|++||++||+++++++||++|+++|++|++.||+
T Consensus       115 ~~~~s~Pv~ig~~Gv~~v~~l~Ls~~E~~~l~~s~~~l~~  154 (163)
T d1hyha2         115 GMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQ  154 (163)
T ss_dssp             CSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeEEEEcCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            3445999999999999999999999999999999999986

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.32  E-value=1.2e-07  Score=72.65  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        157 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       157 ~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +-|+|++||++|++++++++||++|+++|++|++.|++
T Consensus       118 ~~S~Pv~ig~~Gv~~v~~l~l~~~E~~~L~~s~~~L~~  155 (161)
T d1o6za2         118 AFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSD  155 (161)
T ss_dssp             EEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeEEcCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            34999999999999999999999999999999999986

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.32  E-value=1.3e-07  Score=74.58  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=49.3

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH----Hh-HHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA----QA-IKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa----~~-l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.++++.++.+. .+..+.|+    ++ .|++    +-|+|++||++||+.+++++||++|+++|++||+.|++
T Consensus        93 ~a~~~~~~~i~~~~-~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l~L~~~E~~~l~~Sa~~L~~  167 (179)
T d5mdha2          93 KAICDHVRDIWFGT-PEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE  167 (179)
T ss_dssp             HHHHHHHHHHHHCC-CTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc-ccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            55566666655443 33344443    22 3444    45999999999999999999999999999999999875

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=2.9e-07  Score=71.29  Aligned_cols=64  Identities=31%  Similarity=0.470  Sum_probs=47.7

Q ss_pred             EEEEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        130 VTHIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       130 V~~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      +..++.+.+.++ ...++.++  .+.|++    +-|+|+++|++||+++++++||++|+++|++||+.||+
T Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~lk~  165 (172)
T d2ldxa2          96 VTDLARSILKNL-KRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWN  165 (172)
T ss_dssp             HHHHHHHHHTTC-CEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHhhcCCC-ccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            333444444443 34455554  455554    34999999999999999999999999999999999975

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=2.4e-07  Score=71.79  Aligned_cols=66  Identities=15%  Similarity=0.104  Sum_probs=48.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--Hh----HHhhhcccceeecCCceeEEecC-CCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QA----IKEVFLSLPCVMADNGVTHIVNQ-PLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~----l~~~~~svP~vlg~~Gv~~ii~l-~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++..++..++.+. +...++++  ..    .++.+-|+|++||++|+++++++ +||++|+++|++|++.||.
T Consensus        84 ~a~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~  156 (167)
T d2cmda2          84 QAAARFGLSLVRAL-QGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK  156 (167)
T ss_dssp             HHHHHHHHHHHHHH-TTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC-CCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Confidence            44455556666554 44444443  11    23455699999999999999998 5999999999999999974

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.25  E-value=2.2e-07  Score=72.29  Aligned_cols=66  Identities=23%  Similarity=0.464  Sum_probs=51.1

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH--HhHHh---hhcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA--QAIKE---VFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa--~~l~~---~~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++.+++++++.++ ...++.++  ++.|+   .+-|+|++||++|++++++++||++|+++|++|++.||+
T Consensus        90 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l~Ls~~E~~~l~~s~~~l~~  160 (171)
T d1ez4a2          90 TALMRISKAILRDE-NAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKK  160 (171)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC-CceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            44555666666665 45566555  33444   344999999999999999999999999999999999975

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=98.18  E-value=4.1e-07  Score=70.71  Aligned_cols=62  Identities=8%  Similarity=0.081  Sum_probs=48.8

Q ss_pred             EEecCCCCHHHHHHHHhhH--HhHHhh----hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        132 HIVNQPLTQEEIEKLKKSA--QAIKEV----FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       132 ~Ive~iLsdeE~~iL~~Sa--~~l~~~----~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .+..+++.+. ...+++|+  ++.|+.    +-|+|+++|++||+.+.+++||++|+++|++|++.|++
T Consensus        94 ~~~~~i~~~~-~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l~L~~~e~~~l~~s~~~L~~  161 (171)
T d1b8pa2          94 HIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLE  161 (171)
T ss_dssp             HHHHHHHCCT-TCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCC-ccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            3445555554 45666666  556654    44999999999999999999999999999999999865

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.14  E-value=1.4e-07  Score=73.67  Aligned_cols=62  Identities=31%  Similarity=0.460  Sum_probs=48.1

Q ss_pred             EEecCCCCHHHHHHHHhhH--HhHHhh---hcccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        132 HIVNQPLTQEEIEKLKKSA--QAIKEV---FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       132 ~Ive~iLsdeE~~iL~~Sa--~~l~~~---~~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++++++.++ ...++.|+  ++.|++   +-|+|++||++|++++++++||++|+++|++|++.||+
T Consensus        95 ~~~~~~~~~~-~~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l~L~~~E~~~l~~s~~~lk~  161 (172)
T d1llca2          95 RISKAILNDE-NAVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKK  161 (172)
T ss_dssp             HHHHHHHHTC-CCCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCCCCTTHHHHHHHTTTTTTTT
T ss_pred             HHHHHHhcCC-CCccceeeeecCccCcccceEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            4455555554 35566665  444544   34999999999999999999999999999999999875

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=2.3e-07  Score=72.47  Aligned_cols=66  Identities=14%  Similarity=0.102  Sum_probs=51.4

Q ss_pred             ceEEEEecCCC--CHHHHHHHHhhH--HhHHhhh----cccceeecCCceeEEecCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPL--TQEEIEKLKKSA--QAIKEVF----LSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iL--sdeE~~iL~~Sa--~~l~~~~----~svP~vlg~~Gv~~ii~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++..++...+  +++ .+.+++|+  ++.|++.    .++|++++++|++.+.+++||++|+++|++||+.|++
T Consensus        89 ~a~~~~~~~~~~~~~~-~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l~L~~~E~~~l~~s~~~L~~  162 (173)
T d1y7ta2          89 NAAIEHIRDWALGTPE-GDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLD  162 (173)
T ss_dssp             HHHHHHHHHHHTBCCT-TCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCC-CCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            45555665333  354 57788887  7777653    4999999998899898999999999999999999864

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=98.03  E-value=1.3e-06  Score=69.84  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             ceEEEEecCCCCHHHHHHHHhhH----Hh-HHhh----hcccceeecCCceeEEe-cCCCCHHHHHHHHHHHHHHHh
Q psy17692        128 NGVTHIVNQPLTQEEIEKLKKSA----QA-IKEV----FLSLPCVMADNGVTHIV-NQPLTQEEIEKLKKSAQAIKI  194 (211)
Q Consensus       128 ~GV~~Ive~iLsdeE~~iL~~Sa----~~-l~~~----~~svP~vlg~~Gv~~ii-~l~L~~~E~~~l~~Sa~~ik~  194 (211)
                      .++..++++++.+. ...++.|+    ++ .|++    +-|+|++||++|+.+++ +++||++|+++|++|++.|++
T Consensus        89 ~A~~~~~~ai~~~~-~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~~S~~eL~~  164 (188)
T d7mdha2          89 VSIADAIKSLVTPT-PEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA  164 (188)
T ss_dssp             HHHHHHHHHHHSCC-CTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            56667777777665 45455554    44 3654    44999999999998886 699999999999999988864

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.039  Score=29.61  Aligned_cols=11  Identities=45%  Similarity=1.138  Sum_probs=9.7

Q ss_pred             ceeeccccccc
Q psy17692        199 KCQVCGKVYKA  209 (211)
Q Consensus       199 ~~~~~~~~~~~  209 (211)
                      +|..|||.|..
T Consensus         4 ~C~eCgK~F~~   14 (26)
T d1x6ea2           4 KCLECGKAFSQ   14 (26)
T ss_dssp             ECSSSCCEESS
T ss_pred             cCCCCcCeecc
Confidence            79999999964

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=0.06  Score=28.21  Aligned_cols=11  Identities=55%  Similarity=1.340  Sum_probs=9.4

Q ss_pred             cceeecccccc
Q psy17692        198 VKCQVCGKVYK  208 (211)
Q Consensus       198 ~~~~~~~~~~~  208 (211)
                      -||.+|||.|.
T Consensus         2 hkc~~c~kcfs   12 (26)
T d2dmda2           2 HKCEVCGKCFS   12 (26)
T ss_dssp             CCBTTTTBCCC
T ss_pred             CccchhhhHhc
Confidence            38999999884

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.12  Score=29.82  Aligned_cols=11  Identities=45%  Similarity=1.162  Sum_probs=9.8

Q ss_pred             ceeeccccccc
Q psy17692        199 KCQVCGKVYKA  209 (211)
Q Consensus       199 ~~~~~~~~~~~  209 (211)
                      +|.+|||.|.-
T Consensus        14 ~C~~CgK~F~~   24 (38)
T d2cota2          14 KCDECGKSFSH   24 (38)
T ss_dssp             BCSSSCCBCSC
T ss_pred             ecCCCCceeeC
Confidence            79999999974

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.92  E-value=0.12  Score=27.98  Aligned_cols=11  Identities=18%  Similarity=0.929  Sum_probs=9.6

Q ss_pred             ceeeccccccc
Q psy17692        199 KCQVCGKVYKA  209 (211)
Q Consensus       199 ~~~~~~~~~~~  209 (211)
                      +|++|||.|..
T Consensus         5 ~C~~C~k~F~~   15 (28)
T d1a1ia2           5 QCRICMRNFSR   15 (28)
T ss_dssp             ECTTTCCEESC
T ss_pred             cCCCCcCEecc
Confidence            79999999963