Psyllid ID: psy17702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDDVVYDTEESDDEQTIAEEGGRRDS
cccEEEEcccccccccccccHHHHHHHHcccccccccccccccccccccEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccc
ccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccHcHEEEEEEccccccEccEEEEEEcccccHHHEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEEccccccccccccccHHHHHccHHHHHHHHccHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHHccHHHHEccccccEEEEEccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccHcccccccc
MREIVHLQvgqcgnqiGSKFWEVISeehgittngtyngdsdlQLERIQVYYNqaaaghhvpravlvdlepgtmdaiksghygkifrpdnfvygqsgagnnwakghytegAELVDVIMDVVRResencdclqgfqlthsigggtgsgmGTLLISKIrdeypdrimntfsvvpspkvsdtvvepYNAILSVHQLIEhtdetycidneaLYDICHrtlklptptysdlNHLVSATMSGvttclrfpgqlnADLRKLAvnmvpfprlhffmpgfapltsrnsiqyrsltvPELTQQMFDAKnmmvacdprhgkyLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVewipnnvktavcdippkglkmsgtfigNTTAIQGLFKRISEQFTSMFRRKAFLHWytgegmdemefsesgsnvTDVISEYQQYQEATIddvvydteesddeqtiaeeggrrds
mreivhlqvgqcgnqiGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQlthsigggtgsGMGTLLISKIRDEYPDRIMNTfsvvpspkvsDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDDVVYDteesddeqtiaeeggrrds
MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQlthsigggtgsgmgtllisKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDDVVYDTEESDDEQTIAEEGGRRDS
***IVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGM***********VTDVISEYQQYQEATIDDVVY********************
*REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQE****************************
MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDDVVY********************
MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEAT**************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQKNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDDVVYDTEESDDEQTIAEEGGRRDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
P11833447 Tubulin beta chain OS=Par N/A N/A 0.942 0.957 0.860 0.0
P30883445 Tubulin beta-4 chain OS=X N/A N/A 0.942 0.961 0.860 0.0
P02554445 Tubulin beta chain OS=Sus yes N/A 0.942 0.961 0.855 0.0
O17449447 Tubulin beta-1 chain OS=M N/A N/A 0.949 0.964 0.847 0.0
Q9YHC3445 Tubulin beta-1 chain OS=G N/A N/A 0.942 0.961 0.853 0.0
Q91240445 Tubulin beta chain OS=Pse N/A N/A 0.942 0.961 0.853 0.0
Q27U48447 Tubulin beta-1 chain OS=G N/A N/A 0.942 0.957 0.853 0.0
Q24560447 Tubulin beta-1 chain OS=D yes N/A 0.942 0.957 0.853 0.0
P68372445 Tubulin beta-4B chain OS= yes N/A 0.938 0.957 0.859 0.0
P68371445 Tubulin beta-4B chain OS= yes N/A 0.938 0.957 0.859 0.0
>sp|P11833|TBB_PARLI Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1 Back     alignment and function desciption
 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/429 (86%), Positives = 405/429 (94%), Gaps = 1/429 (0%)

Query: 1   MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
           MREIVH+Q GQCGNQIG+KFWEVIS+EHGI   GTY+GDSDLQLERI VYYN+A  G +V
Sbjct: 1   MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 61  PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
           PRAVLVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61  PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
           R+E+E+CDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
           EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
            ACDPRHG+YLTVAAIFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
           LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 420 EYQQYQEAT 428
           EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Paracentrotus lividus (taxid: 7656)
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1 Back     alignment and function description
>sp|P02554|TBB_PIG Tubulin beta chain OS=Sus scrofa PE=1 SV=1 Back     alignment and function description
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1 Back     alignment and function description
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1 Back     alignment and function description
>sp|Q91240|TBB_PSEAM Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1 Back     alignment and function description
>sp|Q27U48|TBB1_GLOMM Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2 Back     alignment and function description
>sp|P68372|TBB4B_MOUSE Tubulin beta-4B chain OS=Mus musculus GN=Tubb4b PE=1 SV=1 Back     alignment and function description
>sp|P68371|TBB4B_HUMAN Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
383861487447 PREDICTED: tubulin beta-1 chain-like [Me 0.966 0.982 0.837 0.0
325297052449 beta tubulin [Aplysia californica] gi|30 0.942 0.953 0.864 0.0
296434297447 tubulin, beta 2C-like [Saccoglossus kowa 0.942 0.957 0.862 0.0
432875424445 PREDICTED: tubulin beta-1 chain-like [Or 0.947 0.966 0.856 0.0
389610735447 beta-tubulin [Papilio polytes] 0.971 0.986 0.835 0.0
351705283445 Tubulin beta-2C chain [Heterocephalus gl 0.942 0.961 0.860 0.0
156389348442 predicted protein [Nematostella vectensi 0.933 0.959 0.836 0.0
157132376447 tubulin beta chain [Aedes aegypti] gi|10 0.964 0.979 0.838 0.0
390349562447 PREDICTED: tubulin beta chain isoform 1 0.942 0.957 0.860 0.0
226489288443 Tubulin beta-2C chain [Schistosoma japon 0.971 0.995 0.837 0.0
>gi|383861487|ref|XP_003706217.1| PREDICTED: tubulin beta-1 chain-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/444 (83%), Positives = 412/444 (92%), Gaps = 5/444 (1%)

Query: 1   MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
           MREIVH+Q GQCGNQIG+KFWE+IS+EHGI   GTY+GDSDLQLERI VYYN+A+ G +V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYV 60

Query: 61  PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
           PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
           R+E+ENCDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIMNT+SVVPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVV 180

Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
           EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVS TMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCL 240

Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+L+VPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMM 300

Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
            ACDPRHG+YLTVAAIFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
           LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 420 EYQQYQEATIDDVVYDTEESDDEQ 443
           EYQQYQEAT D    +  E DDEQ
Sbjct: 421 EYQQYQEATAD----EDAEFDDEQ 440

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|325297052|ref|NP_001191530.1| beta tubulin [Aplysia californica] gi|30088884|gb|AAP13560.1| beta tubulin [Aplysia californica] Back     alignment and taxonomy information
>gi|296434297|ref|NP_001171814.1| tubulin, beta 2C-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|432875424|ref|XP_004072835.1| PREDICTED: tubulin beta-1 chain-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|389610735|dbj|BAM18978.1| beta-tubulin [Papilio polytes] Back     alignment and taxonomy information
>gi|351705283|gb|EHB08202.1| Tubulin beta-2C chain [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|156389348|ref|XP_001634953.1| predicted protein [Nematostella vectensis] gi|156222042|gb|EDO42890.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|157132376|ref|XP_001656025.1| tubulin beta chain [Aedes aegypti] gi|108881720|gb|EAT45945.1| AAEL002851-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|390349562|ref|XP_003727238.1| PREDICTED: tubulin beta chain isoform 1 [Strongylocentrotus purpuratus] gi|135489|sp|P11833.1|TBB_PARLI RecName: Full=Tubulin beta chain; AltName: Full=Beta-tubulin gi|10004|emb|CAA33447.1| unnamed protein product [Paracentrotus lividus] Back     alignment and taxonomy information
>gi|226489288|emb|CAX75788.1| Tubulin beta-2C chain [Schistosoma japonicum] gi|226489292|emb|CAX75790.1| Tubulin beta-2C chain [Schistosoma japonicum] gi|226489294|emb|CAX75791.1| Tubulin beta-2C chain [Schistosoma japonicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
UNIPROTKB|F1NYB1444 TUBB3 "Uncharacterized protein 0.973 0.995 0.799 1.1e-197
UNIPROTKB|G1K342445 TUBB3 "Uncharacterized protein 0.973 0.993 0.799 1.1e-197
UNIPROTKB|Q3MHM5445 TUBB4B "Tubulin beta-4B chain" 0.973 0.993 0.799 1.1e-197
UNIPROTKB|L7N0I7445 TUBB4B "Uncharacterized protei 0.973 0.993 0.799 1.1e-197
UNIPROTKB|P68371445 TUBB4B "Tubulin beta-4B chain" 0.973 0.993 0.799 1.1e-197
UNIPROTKB|F2Z571445 TUBB4B "Uncharacterized protei 0.973 0.993 0.799 1.1e-197
MGI|MGI:1915472445 Tubb4b "tubulin, beta 4B class 0.973 0.993 0.799 1.1e-197
UNIPROTKB|P02554445 P02554 "Tubulin beta chain" [S 0.973 0.993 0.795 2.9e-197
RGD|735101445 Tubb4b "tubulin, beta 4B class 0.973 0.993 0.796 3.8e-197
UNIPROTKB|Q6P9T8445 Tubb4b "Tubulin beta-4B chain" 0.973 0.993 0.796 3.8e-197
UNIPROTKB|F1NYB1 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1914 (678.8 bits), Expect = 1.1e-197, P = 1.1e-197
 Identities = 354/443 (79%), Positives = 394/443 (88%)

Query:     1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
             MREIVHLQ GQCGNQIG+KFWEVIS+EHGI   GTY+GDSDLQLERI VYYN+A  G +V
Sbjct:     1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query:    61 PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
             PRAVLVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct:    61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query:   121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
             R+E+E+CDCLQGFQ                   KIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct:   121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query:   181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
             EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct:   181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query:   241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
             RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM
Sbjct:   241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query:   301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
              ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct:   301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query:   360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
             LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct:   361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query:   420 EYQQYQEATIDDVVYDTEESDDE 442
             EYQQYQ+AT ++     EE+++E
Sbjct:   421 EYQQYQDATAEEEGEFEEEAEEE 443
GO:0003924 "GTPase activity" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
UNIPROTKB|G1K342 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHM5 TUBB4B "Tubulin beta-4B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0I7 TUBB4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P68371 TUBB4B "Tubulin beta-4B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z571 TUBB4B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1915472 Tubb4b "tubulin, beta 4B class IVB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P02554 P02554 "Tubulin beta chain" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|735101 Tubb4b "tubulin, beta 4B class IVb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P9T8 Tubb4b "Tubulin beta-4B chain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6B856TBB2B_BOVINNo assigned EC number0.85080.94270.9617yesN/A
Q9YHC3TBB1_GADMONo assigned EC number0.85310.94270.9617N/AN/A
Q4R5B3TBB2A_MACFANo assigned EC number0.85080.94270.9617N/AN/A
Q13885TBB2A_HUMANNo assigned EC number0.85080.94270.9617yesN/A
Q6P9T8TBB4B_RATNo assigned EC number0.85710.93830.9573yesN/A
P68372TBB4B_MOUSENo assigned EC number0.85940.93830.9573yesN/A
P32882TBB2_CHICKNo assigned EC number0.85080.94270.9617yesN/A
P04350TBB4A_HUMANNo assigned EC number0.85240.93830.9594yesN/A
P83130TBB2_DROERNo assigned EC number0.85080.94270.9596N/AN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.84840.94270.9639yesN/A
P99024TBB5_MOUSENo assigned EC number0.84840.94270.9639yesN/A
P61857TBB2_DROMENo assigned EC number0.85080.94270.9596noN/A
Q24560TBB1_DROMENo assigned EC number0.85310.94270.9574yesN/A
P02554TBB_PIGNo assigned EC number0.85540.94270.9617yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.84840.94270.9639yesN/A
Q5R943TBB5_PONABNo assigned EC number0.84840.94270.9639yesN/A
P36221TBB1_NOTCONo assigned EC number0.85310.94270.9596N/AN/A
P69897TBB5_RATNo assigned EC number0.84840.94270.9639yesN/A
P61858TBB2_DROHYNo assigned EC number0.85080.94270.9596N/AN/A
P85108TBB2A_RATNo assigned EC number0.85080.94270.9617yesN/A
Q27U48TBB1_GLOMMNo assigned EC number0.85310.94270.9574N/AN/A
P41937TBB4_CAEELNo assigned EC number0.83790.94930.9707yesN/A
P09206TBB3_CHICKNo assigned EC number0.85080.94270.9617yesN/A
P69893TBB5_CRIGRNo assigned EC number0.84840.94270.9639yesN/A
P09203TBB1_CHICKNo assigned EC number0.85080.94270.9617yesN/A
P69895TBB5_MACMUNo assigned EC number0.84840.94270.9639yesN/A
P68371TBB4B_HUMANNo assigned EC number0.85940.93830.9573yesN/A
O44388TBB_TRITRNo assigned EC number0.84650.94490.9662N/AN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.85240.93830.9594yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.85240.93830.9594N/AN/A
P09652TBB4_CHICKNo assigned EC number0.80940.97570.9866noN/A
O17449TBB1_MANSENo assigned EC number0.84720.94930.9642N/AN/A
Q9NFZ6TBB2_ECHMUNo assigned EC number0.83680.94270.9617N/AN/A
Q767L7TBB5_PIGNo assigned EC number0.84840.94270.9639yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.84840.94270.9639yesN/A
P09244TBB7_CHICKNo assigned EC number0.84840.94270.9639yesN/A
Q4QRB4TBB3_RATNo assigned EC number0.80800.98230.9911noN/A
P11833TBB_PARLINo assigned EC number0.86010.94270.9574N/AN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.85080.94270.9617yesN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.85080.94270.9617yesN/A
Q91240TBB_PSEAMNo assigned EC number0.85310.94270.9617N/AN/A
Q91575TBB5_XENLANo assigned EC number0.84840.94270.9639N/AN/A
P07437TBB5_HUMANNo assigned EC number0.84840.94270.9639yesN/A
P13602TBB2_XENLANo assigned EC number0.84910.94710.9706N/AN/A
Q3MHM5TBB4B_BOVINNo assigned EC number0.85940.93830.9573yesN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.85240.93830.9594yesN/A
P30883TBB4_XENLANo assigned EC number0.86010.94270.9617N/AN/A
Q7TMM9TBB2A_MOUSENo assigned EC number0.85080.94270.9617yesN/A
P08841TBB3_DROMENo assigned EC number0.81730.97130.9713noN/A
Q3KRE8TBB2B_RATNo assigned EC number0.85080.94270.9617yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-177
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-155
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-148
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-144
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-142
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-135
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-112
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-110
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-110
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-78
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 2e-75
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 6e-71
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 9e-68
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 9e-26
cd06060493 cd06060, misato, Human Misato shows similarity wit 4e-08
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 2e-04
cd02191303 cd02191, FtsZ, FtsZ is a GTPase that is similar to 0.004
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  925 bits (2393), Expect = 0.0
 Identities = 351/425 (82%), Positives = 396/425 (93%), Gaps = 1/425 (0%)

Query: 2   REIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVP 61
           REIVH+Q GQCGNQIG+KFWEVIS+EHG+   GTY GDSDLQLERI VY+N+A+ G +VP
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60

Query: 62  RAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVR 121
           RA+LVDLEPGTMD+++SG +G++FRPDNFV+GQSGAGNNWAKGHYTEGAEL+D ++DVVR
Sbjct: 61  RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120

Query: 122 RESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVVE 181
           +E+E+CDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIM TFSV PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180

Query: 182 PYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCLR 241
           PYNA LSVHQL+E++DET+CIDNEALYDIC RTLKL  PTY DLNHLVSA MSG+TTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240

Query: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMV 301
           FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM 
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 300

Query: 302 ACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGL 360
           ACDPRHG+YLT AAIFRG++SMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+GL
Sbjct: 301 ACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 360

Query: 361 KMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVISE 420
           KMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++SE
Sbjct: 361 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 420

Query: 421 YQQYQ 425
           YQQYQ
Sbjct: 421 YQQYQ 425

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374|consensus448 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376|consensus407 100.0
KOG1375|consensus369 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
KOG2530|consensus483 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.95
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.93
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.92
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.91
PRK13018378 cell division protein FtsZ; Provisional 99.91
PF14881180 Tubulin_3: Tubulin domain 99.87
PRK09330384 cell division protein FtsZ; Validated 99.87
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.48
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.34
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.49
PF13809345 Tubulin_2: Tubulin like 97.57
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1e-134  Score=972.52  Aligned_cols=431  Identities=52%  Similarity=0.995  Sum_probs=421.3

Q ss_pred             CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702          1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH   80 (454)
Q Consensus         1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~   80 (454)
                      |||||+||+||||||||++||+++|+||||.++|.+...++...++.++||+|+..||||||||+|||||+||+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            99999999999999999999999999999999999776666677899999999999999999999999999999999999


Q ss_pred             CCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCC
Q psy17702         81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYP  160 (454)
Q Consensus        81 ~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp  160 (454)
                      |+.+|||++++.+++|||||||+|+|+.|+++.|.++|+|||++|.||+||||+++||+|||||||+|+.|+|+|+++||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccc
Q psy17702        161 DRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL  240 (454)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (454)
                      ||.+.+|+|||.++.++++|||||++|+++.|.++||+++++||++|+++|.+.+++++|+|.++|++||++++++|+++
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl  240 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL  240 (443)
T ss_pred             hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCC
Q psy17702        241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQ  320 (454)
Q Consensus       241 r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  320 (454)
                      ||||++|+|+.+|.+||||||++||+.++|+|+++..+..+++.|+.++++++|+|.|+|.+|+|+.|+|++++.++||+
T Consensus       241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~  320 (443)
T COG5023         241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD  320 (443)
T ss_pred             ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCC---CCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhh
Q psy17702        321 MSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPP---KGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHW  396 (454)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~  396 (454)
                      +.++++++++.+++ |++.+|++|+|+++++++|+++|   .+.+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus       321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw  400 (443)
T COG5023         321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW  400 (443)
T ss_pred             CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence            99999999999999 99999999999999999999999   588899999999999999999999999999999999999


Q ss_pred             cccCCCChhcHHHHHHHHHHHHHHHHHHhhccCCC
Q psy17702        397 YTGEGMDEMEFSESGSNVTDVISEYQQYQEATIDD  431 (454)
Q Consensus       397 Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~  431 (454)
                      |+++||||+||.||++++++|.++|++++.+..++
T Consensus       401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~  435 (443)
T COG5023         401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLD  435 (443)
T ss_pred             HhhccCcccchhhHHHHHHHHHHHHHHhccccccc
Confidence            99999999999999999999999999997776443

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 0.0
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-95
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 3e-95
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 6e-95
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 8e-95
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 8e-95
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-94
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-94
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 2e-94
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 4e-94
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 4e-94
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 4e-94
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-90
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 9e-83
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 1e-71
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-71
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-69
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/429 (81%), Positives = 386/429 (89%), Gaps = 1/429 (0%)
Query: 1   MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
           MREIVH+Q GQCGNQIG+KFWEVIS+EHGI   G+Y+GDSDLQLERI VYYN+AA   +V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61  PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
           PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RRESENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
           R+ESE+CDCLQGFQ                   KIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
           EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
            ACDPRHG+YLTVAA+FRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
           LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAT 428
           EYQQYQ+AT
Sbjct: 421 EYQQYQDAT 429
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 4e-07
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 4e-04
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  788 bits (2036), Expect = 0.0
 Identities = 366/444 (82%), Positives = 409/444 (92%), Gaps = 1/444 (0%)

Query: 1   MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
           MREIVH+Q GQCGNQIG+KFWEVIS+EHGI   G+Y+GDSDLQLERI VYYN+A    +V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 61  PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
           PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
           R+ESE+CDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
           EPYNA LSVHQL+E+TDETY IDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMM 300
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR S QYR+LTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 301 VACDPRHGKYLTVAAIFRGQMSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKG 359
            ACDPRHG+YLTVA IFRG+MSMKEVDEQM+N Q KN+ Y+VEWIPNNVKTAVCDIPP+G
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 360 LKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTGEGMDEMEFSESGSNVTDVIS 419
           LKMS TFIGN+TAIQ LFKRISEQFT+MFRRKAFLHWYTGEGMDEMEF+E+ SN+ D++S
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 420 EYQQYQEATIDDVVYDTEESDDEQ 443
           EYQQYQ+AT D+     EE  +++
Sbjct: 421 EYQQYQDATADEQGEFEEEEGEDE 444
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.97
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.97
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.73
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.1
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.01
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=8.4e-126  Score=970.78  Aligned_cols=430  Identities=85%  Similarity=1.370  Sum_probs=420.4

Q ss_pred             CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702          1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH   80 (454)
Q Consensus         1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~   80 (454)
                      |||||+||+||||||||++||+++|+||+|+++|.+..+++.+.+++++||+|+..|+|+||||||||||+||++++.++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            99999999999999999999999999999999999887766677889999999999999999999999999999999999


Q ss_pred             CCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCC
Q psy17702         81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYP  160 (454)
Q Consensus        81 ~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp  160 (454)
                      ++.+|||++++++++|||||||+|||+.|+++.|.++|+||+++|+||++|||+++||+|||||||+|+.|+|.|+++||
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~  160 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCT
T ss_pred             ccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccc
Q psy17702        161 DRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL  240 (454)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (454)
                      |+.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++.+|+|.++|++||++++++|+++
T Consensus       161 kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~sl  240 (445)
T 3ryc_B          161 DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (445)
T ss_dssp             TSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhcccc
Confidence            99999999999987889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhhhhhhhcccccCcccccccccccccccccccccccCHhHHHHhhcccCccccccCCCCCceeeeeccccCC
Q psy17702        241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRNSIQYRSLTVPELTQQMFDAKNMMVACDPRHGKYLTVAAIFRGQ  320 (454)
Q Consensus       241 r~~~~~n~~~~~l~~nLvP~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  320 (454)
                      ||||.+|+|+.+|.+||||||++||++++|+|+++..+..++++++.+|++++|+++|+|.+|+|++|+|+||++++||+
T Consensus       241 Rf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG~  320 (445)
T 3ryc_B          241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGR  320 (445)
T ss_dssp             HSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEES
T ss_pred             ccCcccccCHHHHhhcccCCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeecC
Confidence            99999999999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhc-ccccccccccCCCceeeeeCCCCCCCcceEEEeccCccchHHHHhhHHHHhhhcccccchhhccc
Q psy17702        321 MSMKEVDEQMVNAQ-KNADYYVEWIPNNVKTAVCDIPPKGLKMSGTFIGNTTAIQGLFKRISEQFTSMFRRKAFLHWYTG  399 (454)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~I~~~l~~l~~~~~~m~~krAflH~Y~~  399 (454)
                      +.++++..++..+| |++.+|++|+|+++|+++|+++|...++++++|+|+|+|.++|+++.+||++||+||||||||++
T Consensus       321 v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp~~~~~s~~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~~  400 (445)
T 3ryc_B          321 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG  400 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCCTTCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHT
T ss_pred             CChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCCcccceeeeeecCcHHHHHHHHHHHHHHHhhhhcccchhhhhc
Confidence            99999999999998 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhcHHHHHHHHHHHHHHHHHHhhccCC
Q psy17702        400 EGMDEMEFSESGSNVTDVISEYQQYQEATID  430 (454)
Q Consensus       400 ~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~  430 (454)
                      |||||+||.||+++|++|+++|++++....|
T Consensus       401 eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~  431 (445)
T 3ryc_B          401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAD  431 (445)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999877644
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-136
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-124
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-116
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 6e-93
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 3e-88
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 3e-85
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 3e-04
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  389 bits (1001), Expect = e-136
 Identities = 207/243 (85%), Positives = 229/243 (94%)

Query: 1   MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHV 60
           MREIVH+Q GQCGNQIG+KFWEVIS+EHGI   G+Y+GDSDLQLERI VYYN+AA   +V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAVLVDLEPGTMDAIKSGHYGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVV 120
           PRA+LVDLEPGTMD+++SG +G+IFRPDNFV+GQSGAGNNWAKGHYTEGAELVD ++DVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYPDRIMNTFSVVPSPKVSDTVV 180
           R+ESE+CDCLQGFQLTHS+GGGTGSGMGTLLISKIR+EYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 181 EPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL 240
           EPYNA LSVHQL+E+TDETYCIDNEALYDIC RTLKL TPTY DLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFP 243
           RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.6
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.57
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.56
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.53
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.5e-77  Score=567.78  Aligned_cols=243  Identities=85%  Similarity=1.398  Sum_probs=236.6

Q ss_pred             CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCcccceEEecCCCCccccccccc
Q psy17702          1 MREIVHLQVGQCGNQIGSKFWEVISEEHGITTNGTYNGDSDLQLERIQVYYNQAAAGHHVPRAVLVDLEPGTMDAIKSGH   80 (454)
Q Consensus         1 M~EIitiq~Gq~GnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRal~vD~e~~~i~~i~~~~   80 (454)
                      |||||+|||||||||||.+||+++++||+++++|....+.+...+++++||.|...++|+||||+||+||++|++++.++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            99999999999999999999999999999999998776666667788999999999999999999999999999999999


Q ss_pred             CCccccCCCcccccCCCCCCccccccccchhhHHHHHHHHHHHhhhcCCCCCceEEeecCCCccccchHHHHHHhhhhCC
Q psy17702         81 YGKIFRPDNFVYGQSGAGNNWAKGHYTEGAELVDVIMDVVRRESENCDCLQGFQLTHSIGGGTGSGMGTLLISKIRDEYP  160 (454)
Q Consensus        81 ~~~~~~~~~~i~~~~~~gnn~a~G~~~~g~~~~d~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~L~deyp  160 (454)
                      ++++|+|++++++++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp  160 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCS
T ss_pred             cccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccceeEEecChhhHhhhhccCCCCCCCccchhHHHHHHhhcCcccc
Q psy17702        161 DRIMNTFSVVPSPKVSDTVVEPYNAILSVHQLIEHTDETYCIDNEALYDICHRTLKLPTPTYSDLNHLVSATMSGVTTCL  240 (454)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (454)
                      ++.+++++|+|++..+++++||||++|+|++|.+++|++++|||++|+++|.+.++++.++|+++|++||+.|+++|+++
T Consensus       161 ~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~  240 (243)
T d1tubb1         161 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (243)
T ss_dssp             SSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHHHHHTBT
T ss_pred             cceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            99999999999987899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy17702        241 RFP  243 (454)
Q Consensus       241 r~~  243 (454)
                      |||
T Consensus       241 RFP  243 (243)
T d1tubb1         241 RFP  243 (243)
T ss_dssp             TBS
T ss_pred             cCC
Confidence            998
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure