Psyllid ID: psy17728

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKKA
cccccccccccccccccccccHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccc
ccccccccccccccccccccccccccccccccccccHHcccccccHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccccccccccc
mmldipedneegeqdtpdkpkELKQLWTGCFQQSMNEFLQQFNesisvdevlyredIAGSIAHVTMLgerniideqDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNvgrklhtgrsrndqvVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHkhhimpgfthfqfaqpisLGHYLLAYASMFRRDIERLLDCRrrvnvnplgsaalggEFLIKKA
mmldipedneegeqdtpdkPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTmlgerniideqdKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNvgrklhtgrsrndqvvldlRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVnvnplgsaalggeflikka
MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKKA
************************QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI***
******************************FQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKK*
******************KPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKKA
*******************************QQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query231 2.2.26 [Sep-21-2011]
A6TL09 460 Argininosuccinate lyase O yes N/A 0.865 0.434 0.535 2e-57
Q6FFB2 477 Argininosuccinate lyase O yes N/A 0.861 0.417 0.502 6e-56
Q2SQ67 468 Argininosuccinate lyase O yes N/A 0.891 0.440 0.476 8e-56
Q8GDU5 458 Argininosuccinate lyase ( N/A N/A 0.870 0.438 0.522 2e-55
A3DBU0 458 Argininosuccinate lyase O yes N/A 0.865 0.436 0.51 3e-55
B0VMC7 477 Argininosuccinate lyase O yes N/A 0.887 0.429 0.492 4e-55
B2I1W9 477 Argininosuccinate lyase O yes N/A 0.887 0.429 0.492 4e-55
B0VDE4 477 Argininosuccinate lyase O yes N/A 0.887 0.429 0.492 4e-55
B7I338 477 Argininosuccinate lyase O yes N/A 0.887 0.429 0.492 4e-55
B7H1L9 477 Argininosuccinate lyase O yes N/A 0.887 0.429 0.492 4e-55
>sp|A6TL09|ARLY_ALKMQ Argininosuccinate lyase OS=Alkaliphilus metalliredigens (strain QYMF) GN=argH PE=3 SV=1 Back     alignment and function desciption
 Score =  222 bits (565), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 140/200 (70%)

Query: 25  QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
           +LW G F ++    + QFN SI  D+ LY+ DIAGS+AH  ML   NII +Q+ +LIV+ 
Sbjct: 2   KLWGGRFSKNTAALVDQFNASIEFDQKLYKYDIAGSVAHAKMLAHANIITKQESQLIVEG 61

Query: 85  LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
           L+ I  DIE GKVE ++ELEDIHMNIE+ LI  IG VG+KLHT RSRNDQV +D+RL+ R
Sbjct: 62  LQSILADIEAGKVEFQLELEDIHMNIETLLIDSIGEVGKKLHTARSRNDQVAVDIRLYLR 121

Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
             I  + +L+   +   T +A+ H   IMPG+TH Q AQ ++LGH+ +AY  MF+RD ER
Sbjct: 122 EEILEICELIKQLLITFTDIAEKHVDTIMPGYTHLQRAQAVTLGHHFMAYFQMFKRDHER 181

Query: 205 LLDCRRRVNVNPLGSAALGG 224
           LLDC +RVNV PLG+ AL G
Sbjct: 182 LLDCYKRVNVMPLGAGALAG 201

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 1
>sp|Q6FFB2|ARLY_ACIAD Argininosuccinate lyase OS=Acinetobacter sp. (strain ADP1) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q2SQ67|ARLY_HAHCH Argininosuccinate lyase OS=Hahella chejuensis (strain KCTC 2396) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q8GDU5|ARLY_HELMO Argininosuccinate lyase (Fragment) OS=Heliobacillus mobilis PE=3 SV=1 Back     alignment and function description
>sp|A3DBU0|ARLY_CLOTH Argininosuccinate lyase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B0VMC7|ARLY_ACIBS Argininosuccinate lyase OS=Acinetobacter baumannii (strain SDF) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B2I1W9|ARLY_ACIBC Argininosuccinate lyase OS=Acinetobacter baumannii (strain ACICU) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B0VDE4|ARLY_ACIBY Argininosuccinate lyase OS=Acinetobacter baumannii (strain AYE) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B7I338|ARLY_ACIB5 Argininosuccinate lyase OS=Acinetobacter baumannii (strain AB0057) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B7H1L9|ARLY_ACIB3 Argininosuccinate lyase OS=Acinetobacter baumannii (strain AB307-0294) GN=argH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query231
403051054 476 argininosuccinate lyase [Acinetobacter b 0.861 0.418 0.512 7e-56
389703384 476 argininosuccinate lyase [Acinetobacter s 0.861 0.418 0.512 9e-56
150388487 460 argininosuccinate lyase [Alkaliphilus me 0.865 0.434 0.535 1e-55
381196777 477 argininosuccinate lyase [Acinetobacter l 0.861 0.417 0.502 3e-55
421464557 477 argininosuccinate lyase [Acinetobacter r 0.913 0.442 0.490 3e-55
421856849 477 argininosuccinate lyase [Acinetobacter r 0.913 0.442 0.490 3e-55
255320963 477 argininosuccinate lyase [Acinetobacter r 0.913 0.442 0.490 3e-55
262370153 477 argininosuccinate lyase [Acinetobacter j 0.861 0.417 0.497 7e-55
350272157 461 argininosuccinate lyase [Oscillibacter v 0.865 0.433 0.505 2e-54
358012054 476 argininosuccinate lyase [Acinetobacter s 0.861 0.418 0.502 3e-54
>gi|403051054|ref|ZP_10905538.1| argininosuccinate lyase [Acinetobacter bereziniae LMG 1003] gi|445419643|ref|ZP_21435287.1| argininosuccinate lyase [Acinetobacter sp. WC-743] gi|444759459|gb|ELW83926.1| argininosuccinate lyase [Acinetobacter sp. WC-743] Back     alignment and taxonomy information
 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 102/199 (51%), Positives = 141/199 (70%)

Query: 26  LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
           +W G F ++ + F+ +F  S+  D+  Y++DIAGSIAH TML +  ++ EQ+++ I+  L
Sbjct: 18  MWGGRFSEATDAFVAEFTASVQFDQRFYKQDIAGSIAHATMLAKVGVLTEQERDDIINGL 77

Query: 86  KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRR 145
             I+ +IE G+ E +++LED+HMNIES L +RIG  G+KLHTGRSRNDQV  D+RL+ R 
Sbjct: 78  NTIKTEIEAGQFEWRIDLEDVHMNIESRLTQRIGITGKKLHTGRSRNDQVATDIRLYVRD 137

Query: 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERL 205
            I A++KLL    K + RLA  +   IMPGFTH Q AQP++ GH+L+A+  M  RD ERL
Sbjct: 138 EIDAILKLLEKLQKGILRLASNNTQTIMPGFTHLQTAQPVTFGHHLMAWFEMLVRDSERL 197

Query: 206 LDCRRRVNVNPLGSAALGG 224
           +DCR+RVN  PLGSAAL G
Sbjct: 198 IDCRKRVNRMPLGSAALAG 216

Source: Acinetobacter bereziniae LMG 1003

Species: Acinetobacter bereziniae

Genus: Acinetobacter

Family: Moraxellaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|389703384|ref|ZP_10185575.1| argininosuccinate lyase [Acinetobacter sp. HA] gi|388611434|gb|EIM40536.1| argininosuccinate lyase [Acinetobacter sp. HA] Back     alignment and taxonomy information
>gi|150388487|ref|YP_001318536.1| argininosuccinate lyase [Alkaliphilus metalliredigens QYMF] gi|166988202|sp|A6TL09.1|ARLY_ALKMQ RecName: Full=Argininosuccinate lyase; Short=ASAL; AltName: Full=Arginosuccinase gi|149948349|gb|ABR46877.1| argininosuccinate lyase [Alkaliphilus metalliredigens QYMF] Back     alignment and taxonomy information
>gi|381196777|ref|ZP_09904118.1| argininosuccinate lyase [Acinetobacter lwoffii WJ10621] Back     alignment and taxonomy information
>gi|421464557|ref|ZP_15913247.1| argininosuccinate lyase [Acinetobacter radioresistens WC-A-157] gi|400205310|gb|EJO36291.1| argininosuccinate lyase [Acinetobacter radioresistens WC-A-157] Back     alignment and taxonomy information
>gi|421856849|ref|ZP_16289208.1| argininosuccinate lyase [Acinetobacter radioresistens DSM 6976 = NBRC 102413] gi|403187751|dbj|GAB75409.1| argininosuccinate lyase [Acinetobacter radioresistens DSM 6976 = NBRC 102413] Back     alignment and taxonomy information
>gi|255320963|ref|ZP_05362136.1| argininosuccinate lyase [Acinetobacter radioresistens SK82] gi|262379946|ref|ZP_06073101.1| argininosuccinate lyase [Acinetobacter radioresistens SH164] gi|255301927|gb|EET81171.1| argininosuccinate lyase [Acinetobacter radioresistens SK82] gi|262298140|gb|EEY86054.1| argininosuccinate lyase [Acinetobacter radioresistens SH164] Back     alignment and taxonomy information
>gi|262370153|ref|ZP_06063480.1| argininosuccinate lyase [Acinetobacter johnsonii SH046] gi|262315192|gb|EEY96232.1| argininosuccinate lyase [Acinetobacter johnsonii SH046] Back     alignment and taxonomy information
>gi|350272157|ref|YP_004883465.1| argininosuccinate lyase [Oscillibacter valericigenes Sjm18-20] gi|348596999|dbj|BAL00960.1| argininosuccinate lyase [Oscillibacter valericigenes Sjm18-20] Back     alignment and taxonomy information
>gi|358012054|ref|ZP_09143864.1| argininosuccinate lyase [Acinetobacter sp. P8-3-8] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query231
TIGR_CMR|CHY_2259 456 CHY_2259 "argininosuccinate ly 0.878 0.445 0.492 7.7e-48
TIGR_CMR|ECH_0937 470 ECH_0937 "argininosuccinate ly 0.861 0.423 0.477 5.6e-45
TIGR_CMR|GSU_0156 458 GSU_0156 "argininosuccinate ly 0.870 0.438 0.477 5.6e-45
TAIR|locus:2183825 517 AT5G10920 [Arabidopsis thalian 0.904 0.404 0.457 1.9e-44
TIGR_CMR|CJE_1009 460 CJE_1009 "argininosuccinate ly 0.865 0.434 0.447 5.7e-43
TIGR_CMR|BA_4879 462 BA_4879 "argininosuccinate lya 0.874 0.437 0.430 5.2e-42
TIGR_CMR|SPO_0332 463 SPO_0332 "argininosuccinate ly 0.883 0.440 0.426 2.1e-38
TIGR_CMR|DET_1261 461 DET_1261 "argininosuccinate ly 0.839 0.420 0.422 1.3e-36
UNIPROTKB|Q9KNT9 458 argH "Argininosuccinate lyase" 0.861 0.434 0.4 1.9e-35
TIGR_CMR|VC_2641 458 VC_2641 "argininosuccinate lya 0.861 0.434 0.4 1.9e-35
TIGR_CMR|CHY_2259 CHY_2259 "argininosuccinate lyase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 100/203 (49%), Positives = 139/203 (68%)

Query:    25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
             +LW G F++  +  ++ F+ SI  D  LY EDI GSIAHVTML  + II  ++KE I+  
Sbjct:     2 KLWGGRFEKDTDREMRDFHASIHFDWRLYEEDIRGSIAHVTMLARQGIITNEEKEKIIGA 61

Query:    85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
             L +I  +I+ GKV+   E EDIH+NIE+ LI++IG+VG+K+HTGRSRNDQV LD RL+ +
Sbjct:    62 LTEILEEIKAGKVDFSPEAEDIHLNIETLLIKKIGDVGKKVHTGRSRNDQVALDTRLYVK 121

Query:   145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
             +   A+I L+ +  + L  LA+ H + IMPG+TH Q AQP++L H+LLAY  MF RD  R
Sbjct:   122 KEGTAIIALIKELQETLINLAEGHLNTIMPGYTHLQRAQPVTLAHHLLAYFWMFDRDRSR 181

Query:   205 LLDCRRRVNVNPLGSAALGGEFL 227
               DC +R + +PLG+ AL G  L
Sbjct:   182 FYDCLKRADRSPLGAGALAGTTL 204
GO:0004056 "argininosuccinate lyase activity" evidence=ISS
GO:0006526 "arginine biosynthetic process" evidence=ISS
TIGR_CMR|ECH_0937 ECH_0937 "argininosuccinate lyase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0156 GSU_0156 "argininosuccinate lyase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2183825 AT5G10920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1009 CJE_1009 "argininosuccinate lyase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4879 BA_4879 "argininosuccinate lyase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0332 SPO_0332 "argininosuccinate lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1261 DET_1261 "argininosuccinate lyase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNT9 argH "Argininosuccinate lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2641 VC_2641 "argininosuccinate lyase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6FFB2ARLY_ACIAD4, ., 3, ., 2, ., 10.50250.86140.4171yesN/A
A6TL09ARLY_ALKMQ4, ., 3, ., 2, ., 10.5350.86580.4347yesN/A
A4J174ARLY_DESRM4, ., 3, ., 2, ., 10.5050.86580.4347yesN/A
Q2RG68ARLY_MOOTA4, ., 3, ., 2, ., 10.51720.87870.4375yesN/A
Q2LT96ARLY_SYNAS4, ., 3, ., 2, ., 10.50460.90900.4449yesN/A
B3E9X6ARLY_GEOLS4, ., 3, ., 2, ., 10.5050.86580.4366yesN/A
A3DBU0ARLY_CLOTH4, ., 3, ., 2, ., 10.510.86580.4366yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.2.1LOW CONFIDENCE prediction!
3rd Layer4.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query231
PRK00855 459 PRK00855, PRK00855, argininosuccinate lyase; Provi 1e-104
cd01359 435 cd01359, Argininosuccinate_lyase, Argininosuccinat 8e-89
COG0165 459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 2e-87
TIGR00838 455 TIGR00838, argH, argininosuccinate lyase 3e-77
PLN02646 474 PLN02646, PLN02646, argininosuccinate lyase 6e-71
cd01334 325 cd01334, Lyase_I, Lyase class I family; a group of 4e-63
PRK04833 455 PRK04833, PRK04833, argininosuccinate lyase; Provi 2e-60
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 6e-51
pfam00206312 pfam00206, Lyase_1, Lyase 6e-35
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 6e-27
PRK06705 502 PRK06705, PRK06705, argininosuccinate lyase; Provi 8e-23
PRK06389 434 PRK06389, PRK06389, argininosuccinate lyase; Provi 1e-22
PRK02186 887 PRK02186, PRK02186, argininosuccinate lyase; Provi 7e-17
cd01595 381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 7e-15
cd01360 387 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate 9e-13
PRK13353 473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 2e-12
TIGR00928 435 TIGR00928, purB, adenylosuccinate lyase 3e-11
COG0015 438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 6e-11
cd01597 437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 1e-10
cd01357 450 cd01357, Aspartase, Aspartase 3e-09
cd01596 450 cd01596, Aspartase_like, aspartase (L-aspartate am 1e-08
PRK07380 431 PRK07380, PRK07380, adenylosuccinate lyase; Provis 3e-07
COG1027 471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 4e-07
PRK12273 472 PRK12273, aspA, aspartate ammonia-lyase; Provision 5e-07
cd01362 455 cd01362, Fumarase_classII, Class II fumarases 7e-06
TIGR00839 468 TIGR00839, aspA, aspartate ammonia-lyase 7e-06
PRK08540 449 PRK08540, PRK08540, adenylosuccinate lyase; Review 7e-06
PRK09053 452 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc 1e-05
PRK00485 464 PRK00485, fumC, fumarate hydratase; Reviewed 3e-05
cd03302 436 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate 9e-05
TIGR02426 338 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona 1e-04
COG0114 462 COG0114, FumC, Fumarase [Energy production and con 3e-04
PRK14515 479 PRK14515, PRK14515, aspartate ammonia-lyase; Provi 8e-04
TIGR00979 458 TIGR00979, fumC_II, fumarate hydratase, class II 0.002
PRK06390 451 PRK06390, PRK06390, adenylosuccinate lyase; Provis 0.002
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional Back     alignment and domain information 
 Score =  308 bits (791), Expect = e-104
 Identities = 110/201 (54%), Positives = 139/201 (69%)

Query: 24  KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
            +LW G F +  +E +++F  SIS D+ L  EDIAGSIAH  ML ++ I+ E++ E I+ 
Sbjct: 4   NKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILA 63

Query: 84  TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFT 143
            L +I  +IE GK E   ELEDIHM IE+ L  RIG+VG KLHTGRSRNDQV  DLRL+ 
Sbjct: 64  GLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYL 123

Query: 144 RRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIE 203
           R  I  + +LLL+  K L  LA+ H   IMPG+TH Q AQP++ GH+LLAYA M  RD+E
Sbjct: 124 RDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLE 183

Query: 204 RLLDCRRRVNVNPLGSAALGG 224
           RL D R+RVN +PLGSAAL G
Sbjct: 184 RLRDARKRVNRSPLGSAALAG 204

Length = 459
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 231
COG0165 459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
PLN02646 474 argininosuccinate lyase 100.0
KOG1316|consensus 464 100.0
PRK06389 434 argininosuccinate lyase; Provisional 100.0
TIGR00838 455 argH argininosuccinate lyase. This model describes 100.0
PRK00855 459 argininosuccinate lyase; Provisional 100.0
PRK04833 455 argininosuccinate lyase; Provisional 100.0
PRK12425 464 fumarate hydratase; Provisional 100.0
PRK06705 502 argininosuccinate lyase; Provisional 100.0
PRK14515 479 aspartate ammonia-lyase; Provisional 100.0
PRK00485 464 fumC fumarate hydratase; Reviewed 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
PRK12273 472 aspA aspartate ammonia-lyase; Provisional 100.0
cd01357 450 Aspartase Aspartase. This subgroup contains Escher 100.0
PRK13353 473 aspartate ammonia-lyase; Provisional 100.0
cd01359 435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 100.0
cd01362 455 Fumarase_classII Class II fumarases. This subgroup 100.0
TIGR00979 458 fumC_II fumarate hydratase, class II. Putative fum 100.0
cd01334 325 Lyase_I Lyase class I family; a group of proteins 100.0
TIGR00839 468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
cd01596 450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
PLN00134 458 fumarate hydratase; Provisional 100.0
cd01595 381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
cd01360 387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
TIGR02426 338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 100.0
PRK02186 887 argininosuccinate lyase; Provisional 100.0
cd01597 437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
PRK05975 351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
PRK08470 442 adenylosuccinate lyase; Provisional 100.0
PRK06390 451 adenylosuccinate lyase; Provisional 100.0
PRK08540 449 adenylosuccinate lyase; Reviewed 100.0
PRK07492 435 adenylosuccinate lyase; Provisional 100.0
TIGR00928 435 purB adenylosuccinate lyase. This family consists 100.0
PRK07380 431 adenylosuccinate lyase; Provisional 100.0
PRK09053 452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
COG0015 438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
cd03302 436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
PRK09285 456 adenylosuccinate lyase; Provisional 100.0
cd01598 425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
PLN02848 458 adenylosuccinate lyase 100.0
COG0114 462 FumC Fumarase [Energy production and conversion] 100.0
COG1027 471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
KOG1317|consensus 487 99.95
KOG2700|consensus 481 99.88
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 99.88
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-59  Score=423.28  Aligned_cols=205  Identities=49%  Similarity=0.754  Sum_probs=201.6

Q ss_pred             hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728         25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE  104 (231)
Q Consensus        25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e  104 (231)
                      ++|+|||.+.+++.+..|+.+..+|++|+++||.+++||++||.+.|+|+++++++|.++|.++.+++..+.|.+++..|
T Consensus         4 ~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~~~E   83 (459)
T COG0165           4 KLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDDE   83 (459)
T ss_pred             CCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCCccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728        105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP  184 (231)
Q Consensus       105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P  184 (231)
                      |||++||+.|++++|+.|+|+|+||||||||+|+++||+|+.+..|.+.+..|+++|+++|++|.+++||||||+|+|||
T Consensus        84 DvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~AQP  163 (459)
T COG0165          84 DVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQP  163 (459)
T ss_pred             cHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCcccccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728        185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK  229 (231)
Q Consensus       185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~  229 (231)
                      ||||||+++|+++|.||++||.++++|++.||||+||++||+||-
T Consensus       164 vtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~i  208 (459)
T COG0165         164 VTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPI  208 (459)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCC
Confidence            999999999999999999999999999999999999999999984

>PLN02646 argininosuccinate lyase Back     alignment and domain information
>KOG1316|consensus Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1317|consensus Back     alignment and domain information
>KOG2700|consensus Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query231
2e9f_A 462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 3e-39
1aos_A 464 Human Argininosuccinate Lyase Length = 464 3e-37
1k7w_A 468 Crystal Structure Of S283a Duck Delta 2 Crystallin 6e-37
1hy1_A 468 Crystal Structure Of Wild Type Duck Delta 2 Crystal 6e-37
1k62_A 464 Crystal Structure Of The Human Argininosuccinate Ly 7e-37
1tj7_A 457 Structure Determination And Refinement At 2.44 A Re 1e-36
1tju_A 474 Crystal Structure Of T161s Duck Delta 2 Crystallin 1e-36
1tjv_A 474 Crystal Structure Of T161d Duck Delta 2 Crystallin 4e-36
1auw_A 468 H91n Delta 2 Crystallin From Duck Length = 468 4e-36
1u15_A 472 Crystal Structure Of A Duck-Delta-Crystallin-1 Doub 4e-34
1hy0_A 466 Crystal Structure Of Wild Type Duck Delta 1 Crystal 6e-33
1xwo_A 465 Crystal Structrue Of Goose Delta Crystallin Length 3e-32
1dcn_A 447 Inactive Mutant H162n Of Delta 2 Crystallin With Bo 8e-32
1i0a_A 466 Crystal Structure Of Wild Type Turkey Delta 1 Cryst 8e-30
1q5n_A 454 Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate 2e-08
3c8t_A 451 Crystal Structure Of Fumarate Lyase From Mesorhizob 2e-05
2pfm_A 444 Crystal Structure Of Adenylosuccinate Lyase (Purb) 2e-04
1dof_A 403 The Crystal Structure Of Adenylosuccinate Lyase Fro 2e-04
1j3u_A 468 Crystal Structure Of Aspartase From Bacillus Sp. Ym 7e-04
3r6y_A 401 Crystal Structure Of Chymotrypsin-Treated Aspartase 7e-04
1c3u_A 431 T. Maritima Adenylosuccinate Lyase Length = 431 8e-04
1c3c_A 429 T. Maritima Adenylosuccinate Lyase Length = 429 9e-04
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure 
Iteration: 1

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 2/200 (1%)
Query: 27  WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
           W G F +  +    +FN S++ D  L+RED+  +  H  ML    ++  ++ E I+K L 
Sbjct: 6   WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLD 65
Query: 87  DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRN 146
            IE +IE G    + ELED+HMN+E+ L   +G  G KLHT RSRNDQV  DLRL+ R  
Sbjct: 66  RIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGA 125
Query: 147 IKALIKLLLDTVKQLTRLAQLH--KHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
           I  L+ LLL   + L R A+ H    +++PG+TH Q AQP+ L H+ LAY  M +RD  R
Sbjct: 126 IDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGR 185
Query: 205 LLDCRRRVNVNPLGSAALGG 224
           L D + R+N +PLG+AAL G
Sbjct: 186 LEDAKERLNESPLGAAALAG 205
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase Length = 464 Back     alignment and structure
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant Length = 468 Back     alignment and structure
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin (Eye Lens Protein) Length = 468 Back     alignment and structure
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase Q286r Mutant Length = 464 Back     alignment and structure
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck Length = 468 Back     alignment and structure
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop Mutant (Dlm) Length = 472 Back     alignment and structure
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin (Eye Lens Protein) Length = 466 Back     alignment and structure
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin Length = 465 Back     alignment and structure
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound Argininosuccinate Length = 447 Back     alignment and structure
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin (Eye Lens Protein) Length = 466 Back     alignment and structure
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus Sp. Adp1 Length = 454 Back     alignment and structure
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 Back     alignment and structure
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444 Back     alignment and structure
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403 Back     alignment and structure
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1 Length = 468 Back     alignment and structure
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From Bacillus Sp. Ym55-1 Length = 401 Back     alignment and structure
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query231
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 1e-103
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 1e-101
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 1e-101
2fel_A 359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 4e-14
3c8t_A 451 Fumarate lyase; structural genomics, PSI-2, protei 4e-14
1re5_A 450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 3e-13
2pfm_A 444 Adenylosuccinate lyase; PURB, purine biosynthesis, 3e-13
1c3c_A 429 Protein (adenylosuccinate lyase); purine biosynthe 4e-13
1q5n_A 454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 5e-13
1dof_A 403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 1e-12
4eei_A 438 Adenylosuccinate lyase; structural genomics, niaid 1e-11
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 5e-11
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 6e-11
3ocf_A 478 Fumarate lyase:delta crystallin; fumarase, brucell 2e-05
1jsw_A 478 L-aspartase, L-aspartate ammonia-lyase; amino acid 2e-05
3e04_A 490 Fumarase, fumarate hydratase; TCA cycle, structura 4e-05
3r6q_A 468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 5e-05
1fur_A 467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
3gtd_A 482 Fumarase C, fumarate hydratase class II; structura 1e-04
1yfm_A 488 Fumarase, YFUM; lyase, krebs cycle, active site wa 1e-04
4adm_A 495 Fumarase C, fumarate hydratase class II; lyase, tr 2e-04
1vdk_A 466 Fumarase C, fumarate hydratase class II; TCA cycle 2e-04
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Length = 462 Back     alignment and structure
 Score =  304 bits (781), Expect = e-103
 Identities = 87/203 (42%), Positives = 122/203 (60%), Gaps = 2/203 (0%)

Query: 24  KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
            + W G F +  +    +FN S++ D  L+RED+  +  H  ML    ++  ++ E I+K
Sbjct: 3   HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILK 62

Query: 84  TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFT 143
            L  IE +IE G    + ELED+HMN+E+ L   +G  G KLHT RSRNDQV  DLRL+ 
Sbjct: 63  GLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYL 122

Query: 144 RRNIKALIKLLLDTVKQLTRLAQLHKH--HIMPGFTHFQFAQPISLGHYLLAYASMFRRD 201
           R  I  L+ LLL   + L R A+ H    +++PG+TH Q AQP+ L H+ LAY  M +RD
Sbjct: 123 RGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRD 182

Query: 202 IERLLDCRRRVNVNPLGSAALGG 224
             RL D + R+N +PLG+AAL G
Sbjct: 183 AGRLEDAKERLNESPLGAAALAG 205
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Length = 457 Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query231
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1fur_A 467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1vdk_A 466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
1jsw_A 478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
1yfm_A 488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
4adm_A 495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
3r6q_A 468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
3ocf_A 478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
1q5n_A 454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
3c8t_A 451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
3gtd_A 482 Fumarase C, fumarate hydratase class II; structura 100.0
3e04_A 490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
2fel_A 359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
1dof_A 403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
1c3c_A 429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
1re5_A 450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
4hgv_A 495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
2pfm_A 444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
4eei_A 438 Adenylosuccinate lyase; structural genomics, niaid 100.0
2qga_B 465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
3bhg_A 459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
2ptr_A 462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
Probab=100.00  E-value=1.8e-52  Score=387.63  Aligned_cols=204  Identities=36%  Similarity=0.615  Sum_probs=196.6

Q ss_pred             hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceec-ccC
Q psy17728         25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VEL  103 (231)
Q Consensus        25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~-~~~  103 (231)
                      ++|+|||++++++.+..|+.+..+|.++++++|.+++||++++.+.|+||++++++|.++|++|..+...++|+++ ..+
T Consensus         2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~   81 (457)
T 1tj7_A            2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA   81 (457)
T ss_dssp             -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred             cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence            4899999999999999999999999999999999999999999999999999999999999999877777888776 689


Q ss_pred             cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728        104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ  183 (231)
Q Consensus       104 edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~  183 (231)
                      ||+||++|+++.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus        82 ~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~  161 (457)
T 1tj7_A           82 EDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQ  161 (457)
T ss_dssp             SSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEE
T ss_pred             CcHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCe
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728        184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI  228 (231)
Q Consensus       184 PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~  228 (231)
                      ||||||||++|+++|.||++||.+++++++.+||||++++||+++
T Consensus       162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~  206 (457)
T 1tj7_A          162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYE  206 (457)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSC
T ss_pred             echHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCC
Confidence            999999999999999999999999999999999999999999987
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 231
d1k62b_ 459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 5e-51
d1tj7a_ 455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 4e-49
d1tjva_ 449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 2e-45
d1fuoa_ 456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 3e-19
d1j3ua_ 462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 4e-17
d1c3ca_ 429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 4e-17
d1q5na_ 444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-16
d1re5a_ 448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 8e-16
d1jswa_ 459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 1e-14
d1yfma_ 459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 4e-14
d1vdka_ 460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 2e-12
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 5e-51
 Identities = 77/199 (38%), Positives = 115/199 (57%)

Query: 26  LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
           LW G F  +++  +++FN SI+ D  L+  D+ GS A+   L +  ++ + + + I+  L
Sbjct: 3   LWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGL 62

Query: 86  KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRR 145
             +  +   G  +L    EDIH   E  L   IG    KLHTGRSRNDQVV DLRL+ R+
Sbjct: 63  DKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQ 122

Query: 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERL 205
               L  LL + ++ +   A+  +  + PG+TH Q AQPI   H++L++A    RD ERL
Sbjct: 123 TCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERL 182

Query: 206 LDCRRRVNVNPLGSAALGG 224
           L+ R+R+NV PLGS A+ G
Sbjct: 183 LEVRKRINVLPLGSGAIAG 201
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query231
d1k62b_ 459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tj7a_ 455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1tjva_ 449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1j3ua_ 462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1jswa_ 459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1yfma_ 459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1vdka_ 460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1re5a_ 448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1f1oa_ 408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1q5na_ 444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1fuoa_ 456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
d1c3ca_ 429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1dofa_ 402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-56  Score=411.54  Aligned_cols=206  Identities=38%  Similarity=0.613  Sum_probs=201.2

Q ss_pred             hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728         25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE  104 (231)
Q Consensus        25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e  104 (231)
                      |+|||||++++++.+..|+.|..+|.+|++|||++++||++||.++|+||++++++|.++|+++..+...+.|++++..|
T Consensus         2 klW~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~e   81 (459)
T d1k62b_           2 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDE   81 (459)
T ss_dssp             CSSCSCCCCSSCHHHHHTTCCHHHHGGGHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTCC
T ss_pred             CCCCccCCcchhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728        105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP  184 (231)
Q Consensus       105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P  184 (231)
                      |+|+++|.++.+++|+.++|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++|+||||||+|+|||
T Consensus        82 d~~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P  161 (459)
T d1k62b_          82 DIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQP  161 (459)
T ss_dssp             SHHHHHHHHHHHTTSSGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEE
T ss_pred             chHHHHHHHHHHhhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceecceeecccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCCC
Q psy17728        185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKK  230 (231)
Q Consensus       185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~~  230 (231)
                      ||||||+++|+++|.|+++||.+++++++.+|||||+++|++||..
T Consensus       162 ~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lGg~a~~~~~~~~~  207 (459)
T d1k62b_         162 IRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVD  207 (459)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCTTCTTTTCCTTCCC
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCcccc
Confidence            9999999999999999999999999999999999999999999863
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure