Psyllid ID: psy17742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
Protein Sequence
MFTDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSEGNATYEDEEYSVQYSEEPEEETEEMMAIRSITEAGFSEAKAEEFHRKRNKPRVQRETVEEAAVRSIPGHGYSHSIGEQQDISQHSSHAQRTAEEMLAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVTPDLELPTKRPASDDASSSDSAKVARCQDTSISDVARCSDDR
Secondary Structure (PSIPRED)
cccccccccccccccccHHcccccccccccEEcEEEEEEEcEEEEEEEEcEEEEEEEEEcccccccHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHcccccccEEcccccHHHHHHcccccccccEEEEcHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHcccccccccEEEEEEccccccccccccEEEEEEccccccccccEEHHHHHHHHHHcccEEEEEEcHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHcEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccccEEEcccccccccccEccEEEEEcccEEEEEEccEEEEEEEEccccccccccccccccccccccccccccEEEcccccccccccccHHccHHcccccccccccccccccccccccccccccccccccccHHHcccccHHcccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHccHHHHHHHHHccccHHcHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHcccccccccEEEEHEEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccccccccEEEEEEcccccccccccccEEEEEcccccccccEEEcHHHHHHHHHHcccEEEEEccHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHcHHccccccc
Coil and Loop (DISEMBL)
mftdvngplnylqccpkfitmlpdvqctplsinnvylritptfywytYHTSVACLFtmdsegnatyedeeysvqyseepeeeTEEMMAIRSITEAGFSEAKAEEfhrkrnkprvqreTVEEAAvrsipghgyshsigeqqdisqhSSHAQRTAEEMLAIRSitgesfdleDAEQFIQETVIEQnvedseeqrlterpveddteettittttgedstslgasqspcsdqseltnqeAGLGQTVAEHYNQkknvgtelrknSRIVYMRNFNNWTKSMLIDEFLTrckssqplgspikvldmgsgkggdmlkwINGGVKHVVFADIASVSIEDCKTRYEELKrkeearpyrrnvFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAeclkpggffvgtvpdsnqIMARYRRhqsasfgndvyQVQClfdtsrppplfgakydfnlegvvncpeflvYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALeghhkvgtlSKAEWEAITLYQVFAFEKvkgkvtpdvgkltpdsgkvtpdlelptkrpasddasssdsakvarcqdtsisdvarcsddr
Flexible Loop (DISEMBL)
MFTDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSEGNATYEDEEYSVQYSEEPEEETEEMMAIRSITEAGFseakaeefhrkrnkprvqretvEEAAVRSIPGHGYSHSIGEQQDISQHSSHAQRTAEEMLAIRSITGESFDLEDAEQFIQETVieqnvedseeqrlterpveddteettittttgedstslgaSQSPCSDQSELTNQEAGLGQTVAEhynqkknvgtelrknsriVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADiasvsiedCKTRYeelkrkeearpyrrnvfsaelrSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKgkvtpdvgkltpdsgkvtpdlelptkrpasddasssdsakvarcqdtsisdvarcsddr
Low Complexity Region (SEG)
MFTDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSEGNATYEDeeysvqyseepeeeteeMMAIRSITEAGFSEAKAEEFHRKRNKPRVQRETVEEAAVRSIPGHGYSHSIGEQQDISQHSSHAQRTAEEMLAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTERPVeddteettittttgedstSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVTPDLELPTKRPasddasssdsaKVARCQDTSISDVARCSDDR
Disordered region (IsUnstruct)
*****NGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMD***************************************************************************************************************************************************************************************************ELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL*********RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKVT*******************************************************
Disordered Region (DISOPRED)
**TDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSE*************************************************************************************************************************************************************************************AEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEH*********************SKAEWEAITLYQVFAFE**********************************************CQDTSISDVARC****
Disordered Region (DISEMBL)
MFTDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSEGNATYED******************MAIRSITEAGFSE***********************AVRSIPGHGYSHSIG**************TAEEMLAIRSITGESFDLEDAEQFIQETVIEQNV***********************************************NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVTPDLELP***********************************
Disordered Region (DISPRO)
*FTDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSE******************************************************************************************************************************************************************************AGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGK*********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWYTYHTSVACLFTMDSEGNATYEDEEYSVQYSEEPEEETEEMMAIRSITEAGFSEAKAEEFHRKRNKPRVQRETVEEAAVRSIPGHGYSHSIGEQQDISQHSSHAQRTAEEMLAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVTPDLELPTKRPASDDASSSDSAKVARCQDTSISDVARCSDDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	597	2.2.26 [Sep-21-2011]
Q9VJQ4	427	mRNA cap guanine-N7 methy	yes	N/A	0.589	0.824	0.410	1e-79
O43148	476	mRNA cap guanine-N7 methy	yes	N/A	0.495	0.621	0.448	3e-76
Q4R7K1	476	mRNA cap guanine-N7 methy	N/A	N/A	0.495	0.621	0.443	9e-76
Q5U2U7	461	mRNA cap guanine-N7 methy	yes	N/A	0.589	0.763	0.398	3e-73
Q28FT4	405	mRNA cap guanine-N7 methy	yes	N/A	0.510	0.753	0.434	1e-72
Q9D0L8	465	mRNA cap guanine-N7 methy	yes	N/A	0.587	0.754	0.401	1e-72
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	N/A	0.509	0.76	0.427	4e-72
Q9I8S2	402	mRNA cap guanine-N7 methy	N/A	N/A	0.490	0.728	0.431	5e-72
Q61E36	378	mRNA cap guanine-N7 methy	N/A	N/A	0.512	0.809	0.383	5e-53
Q9XVS1	380	mRNA cap guanine-N7 methy	yes	N/A	0.480	0.755	0.377	2e-52

>sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase OS=Drosophila melanogaster GN=l(2)35Bd PE=1 SV=2

 Score =  298 bits (762), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/412 (41%), Positives = 238/412 (57%), Gaps = 60/412 (14%)

Query: 182 EQNVEDSEEQRLTER-PVEDDTEETTITTTTGEDSTSLGASQSP---------------C 225
           EQN  D +  R  +   + DD E      TT   +     S+SP                
Sbjct: 6   EQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPREYYDEPGGKGNGSGA 65

Query: 226 SDQSELTNQEA-GLGQT--VAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLT 282
            DQ E   + A G   T  VA HYN+ K  G + R+ S+I +MRNFNNW KS LI+E+++
Sbjct: 66  DDQDEPETEAASGAANTHVVAHHYNELKEAGRKDRQKSKIFFMRNFNNWIKSQLINEYMS 125

Query: 283 RCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE 342
           + K ++ +G  ++VLDM  GKGGD+LKW    + H++  DIA VS+E C+ RY+++ ++ 
Sbjct: 126 QIKQNKRMGDALRVLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRS 185

Query: 343 EARPYRRNVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKN 392
           E   +  N F+AE          LR +Y+D +L+L+LVSCQF  HY FES+ QA CM++N
Sbjct: 186 EKSKF-ANKFTAEFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRN 244

Query: 393 AAECLKPGGFFVGTVPDSNQIMARYRRH--QSASFGNDVYQVQCLFDT-SRPPPLFGAKY 449
           AAECLKPGGFF+ T+PD+ +I+ R R     +  FGNDVY ++  FD  + P PLFGAKY
Sbjct: 245 AAECLKPGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIE--FDCETDPLPLFGAKY 302

Query: 450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNAL 509
            F+LEGVV+CPEFLV+FP L ++  ++GL+ + +  F  +Y   +  H G +LL++M+ L
Sbjct: 303 QFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENL--HHGRHLLQRMSGL 360

Query: 510 EG-----------------------HHKVGTLSKAEWEAITLYQVFAFEKVK 538
           E                           VGTLSK+EWEA TLY V AF+K K
Sbjct: 361 ESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAATLYLVCAFKKCK 412

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|O43148|MCES_HUMAN mRNA cap guanine-N7 methyltransferase OS=Homo sapiens GN=RNMT PE=1 SV=1

 Score =  286 bits (732), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/343 (44%), Positives = 204/343 (59%), Gaps = 47/343 (13%)

Query: 233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
           N E G   TVA HYN+ + VG E R  SRI Y+RNFNNW KS+LI EFL + +  Q    
Sbjct: 140 NLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVR--QKKKR 197

Query: 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
            I VLD+G GKGGD+LKW  G +  +V  DIA VS++ C+ RYE++K + ++      +F
Sbjct: 198 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSE----YIF 253

Query: 353 SAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
           SAE          L  ++ D  +  D+ SCQF  HYSFES +QA  ML+NA E L PGG+
Sbjct: 254 SAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY 313

Query: 403 FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEF 462
           F+GT P+S +++ R    ++ SFGN++Y V+  F      PLFG KYDFNLEGVV+ PEF
Sbjct: 314 FIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGDYPLFGCKYDFNLEGVVDVPEF 371

Query: 463 LVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGH---------- 512
           LVYFPLL  +A ++ +K + K+ F  FY  KIK +    LL++M ALE +          
Sbjct: 372 LVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVS 431

Query: 513 HKV-------------------GTLSKAEWEAITLYQVFAFEK 536
            KV                   GTLSK+EWEA ++Y VFAFEK
Sbjct: 432 EKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEK 474

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q4R7K1|MCES_MACFA mRNA cap guanine-N7 methyltransferase OS=Macaca fascicularis GN=RNMT PE=2 SV=1

 Score =  285 bits (728), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 152/343 (44%), Positives = 202/343 (58%), Gaps = 47/343 (13%)

Query: 233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
           N E G    VA HYN+ + VG E R  SRI Y+RNFNNW KS+LI EFL + +  Q    
Sbjct: 140 NLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVR--QKKKR 197

Query: 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
            I VLD+G GKGGD+LKW  G +  +V  DIA VSI+ C+ RYE++K + ++      +F
Sbjct: 198 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSIKQCQQRYEDMKNRRDSE----YIF 253

Query: 353 SAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
           SAE          L  ++ D  +  D+ SCQF  HYSFES +QA  ML+NA E L PGG+
Sbjct: 254 SAEFITADCSKELLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY 313

Query: 403 FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEF 462
           F+GT P+S +++ R    ++ SFGN++Y V+  F      PLFG KYDFNLEGVV+ PEF
Sbjct: 314 FIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGDYPLFGCKYDFNLEGVVDVPEF 371

Query: 463 LVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHK-------- 514
           LVYFPLL  +A ++ +K + K+ F  FY  KIK +    LL++M ALE +          
Sbjct: 372 LVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVS 431

Query: 515 ---------------------VGTLSKAEWEAITLYQVFAFEK 536
                                +GTLSK+EWEA ++Y VFAFEK
Sbjct: 432 ERVDDYEHAAKYMKNSQVKLPLGTLSKSEWEATSIYLVFAFEK 474

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q5U2U7|MCES_RAT mRNA cap guanine-N7 methyltransferase OS=Rattus norvegicus GN=Rnmt PE=2 SV=1

 Score =  276 bits (707), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/424 (39%), Positives = 230/424 (54%), Gaps = 72/424 (16%)

Query: 177 QETVIEQN---VEDSEEQR--------LTERPVEDD---TEETTITTTTG-EDSTSLGA- 220
           Q+ ++EQN   V+DS  ++        L E+  EDD   ++ + +    G ED  S G  
Sbjct: 44  QDDLVEQNSSYVQDSPSKKRKLDVEIILDEKHSEDDGGASKRSKLERGGGSEDEPSPGGL 103

Query: 221 --SQSPCSDQSELTNQ-------EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNW 271
              +     Q  L  Q       E G    VA HYN+ + VG   R  SRI Y+RNFNNW
Sbjct: 104 TERKRKLQPQDALETQTRKFQKLEEGHSSAVAAHYNELQEVGLVKRSQSRIFYLRNFNNW 163

Query: 272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDC 331
            KS+LI E L + +  Q     I VLD+G GKGGD+LKW  G +  +V ADIA +S++ C
Sbjct: 164 IKSILIGEILEKVR--QRKNRDITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQC 221

Query: 332 KTRYEELKRKEEARPYRRNVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFE 381
           + RYE++K     R     +FSAE          L  ++ D  +  D+ SCQF  HYSFE
Sbjct: 222 QQRYEDMK----CRRDNEYIFSAEFITADCSKELLVEKFHDPEMYFDICSCQFACHYSFE 277

Query: 382 SVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRP 441
           S++QA  ML+NA   L PGG+F+GT P+S +++ R    ++ SFGN++Y V+  F     
Sbjct: 278 SLEQADMMLRNACGRLNPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGN 335

Query: 442 PPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLN 501
            PLFG KYDFNLEGVV+ PEFLVYFPLL  +A ++ +K I K+ F  FY  KIK +    
Sbjct: 336 YPLFGCKYDFNLEGVVDVPEFLVYFPLLTEMAKKYNMKLIYKKTFLEFYEEKIKNNENKM 395

Query: 502 LLRKMNALEGHHK-----------------------------VGTLSKAEWEAITLYQVF 532
           LL++M ALE +                               +GTLSK+EWEA ++Y VF
Sbjct: 396 LLKRMQALESYPANENSKLASEKAGDYAHAAEYMKNSQVRLPLGTLSKSEWEATSIYLVF 455

Query: 533 AFEK 536
           AFEK
Sbjct: 456 AFEK 459

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q28FT4|MCES_XENTR mRNA cap guanine-N7 methyltransferase OS=Xenopus tropicalis GN=rnmt PE=2 SV=1

 Score =  274 bits (701), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/357 (43%), Positives = 202/357 (56%), Gaps = 52/357 (14%)

Query: 219 GASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLID 278
           G  +SP    S+    E G G  V  HYN+    G E R  SRI ++RNFNNW KS LI 
Sbjct: 60  GEPESP----SKRPRLEEGHGSLVVTHYNELPETGLETRSQSRIFHLRNFNNWMKSALIG 115

Query: 279 EFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338
           EF+ + +        I VLD+G GKGGD+LKW  GG+  +V  DIA VS++ C+ RY++L
Sbjct: 116 EFVEKVRQRT---RNIAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEERYKDL 172

Query: 339 KRKEEARPYRRNVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARC 388
           KRK         VF AE          L  +Y D  ++ D+ SCQF  HYSFE+ +QA  
Sbjct: 173 KRKSR----NERVFEAEFLTADSTKELLSEKYNDPEIKFDICSCQFVYHYSFETYEQADM 228

Query: 389 MLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK 448
           ML+NA E L PGGFF+GT PD  +++ R     + SFGNDVY V+  F+     PLFG K
Sbjct: 229 MLRNACERLCPGGFFIGTTPDGFELVKRLEASDTNSFGNDVYTVK--FEKKGKYPLFGCK 286

Query: 449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNA 508
           YDF+LE VVN PEFLVYFP+L  +A ++ +K I K+ FR F+  K+K      LL++M A
Sbjct: 287 YDFSLEEVVNVPEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEKVKNDEQKMLLKRMKA 346

Query: 509 LE---------------------------GHHK--VGTLSKAEWEAITLYQVFAFEK 536
           LE                           G  K  +GTLSK+EWEA ++Y +FAFEK
Sbjct: 347 LEPYPAAPNFKLVSGRTEDYEHAQKLVENGQVKLPLGTLSKSEWEATSIYLLFAFEK 403

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9D0L8|MCES_MOUSE mRNA cap guanine-N7 methyltransferase OS=Mus musculus GN=Rnmt PE=1 SV=1

 Score =  274 bits (701), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 169/421 (40%), Positives = 228/421 (54%), Gaps = 70/421 (16%)

Query: 178 ETVIEQN---VEDSEEQR--------LTERPVEDDTEETTITTT----TGEDSTSLGA-- 220
           E ++EQN   V+DS  ++        L E+  EDD      +        ED  SLG   
Sbjct: 51  EDLVEQNSSYVQDSPSKKRKLDVEIILEEKHSEDDGGSAKRSKLERGDVSEDEPSLGRLN 110

Query: 221 ----SQSPCSDQ--SELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKS 274
                  P  D+   +L   E G    VA HYN+ + VG   R  SRI Y+RNFNNW KS
Sbjct: 111 QTKRKLQPQDDEVPQKLQKLEEGHSSAVAAHYNELQEVGLAKRSQSRIFYLRNFNNWIKS 170

Query: 275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTR 334
           +LI E L + +  Q     I VLD+G GKGGD+LKW  G +  +V ADIA +S++ C+ R
Sbjct: 171 ILIGEILEKVR--QRKTRDITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQR 228

Query: 335 YEELKRKEEARPYRRNVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQ 384
           YE+++     R    ++FSAE          L  ++ D  +  D+ SCQF  HYSFES  
Sbjct: 229 YEDMR----CRRDNEHIFSAEFITADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQV 284

Query: 385 QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPL 444
           QA  ML+NA   L PGG+F+GT P+S +++ R    ++ SFGN++Y V+  F      PL
Sbjct: 285 QADTMLRNACGRLNPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGNYPL 342

Query: 445 FGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLR 504
           FG KYDFNLEGVV+ PEFLVYFPLL  +A ++ +K I K+ F  FY  KIK +    LL+
Sbjct: 343 FGCKYDFNLEGVVDVPEFLVYFPLLTEMAKKYNMKLIYKKTFLEFYEEKIKNNENKMLLK 402

Query: 505 KMNALEGH--HK---------------------------VGTLSKAEWEAITLYQVFAFE 535
           +M ALE +  H+                           +GTLSK+EWEA ++Y VFAFE
Sbjct: 403 RMQALEQYPAHENSKLASEKVGDYTHAAEYLKKSQVRLPLGTLSKSEWEATSIYLVFAFE 462

Query: 536 K 536
           K
Sbjct: 463 K 463

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score =  273 bits (697), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/351 (42%), Positives = 205/351 (58%), Gaps = 47/351 (13%)

Query: 226 SDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCK 285
           S   +L  +++   Q VA HYN+ K  G   R  SRIVYMRNFNNW KS+LI E L + +
Sbjct: 57  SPSKKLVTEDSLHSQKVATHYNKIKECGLAERNKSRIVYMRNFNNWLKSVLIAEILDKVR 116

Query: 286 SSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR 345
             +     + VLD+G GKGGD+LKW  G +  +V ADIA+VSIE C+ RY +++R+    
Sbjct: 117 QKR---REVTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRR--GH 171

Query: 346 PYRRNVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAE 395
           P  R  FSAE          L  + +D  L+ D+ SCQF  HYSFES  QA  ML+NA E
Sbjct: 172 PNDR-TFSAEFITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACE 230

Query: 396 CLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEG 455
            L+PGGFF+GT PD+ +++ R     S SFGN+V+ V   F      PLFG +YDF+LEG
Sbjct: 231 RLRPGGFFIGTTPDAYELVKRLEESDSNSFGNEVFSVT--FQKKGEYPLFGCQYDFSLEG 288

Query: 456 VVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE----- 510
           VVN PEFLVYFPL   +A ++ ++ + K+ F+ F+  K+K+    +L++ M ALE     
Sbjct: 289 VVNVPEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEEKVKDGKNKDLMQWMQALEQYPPD 348

Query: 511 -------------GHHK-----------VGTLSKAEWEAITLYQVFAFEKV 537
                         H K           +GTLSK+EWEA ++Y V+ FEK+
Sbjct: 349 ERGQLSSSGPGEYDHAKRKAADPAVRRPLGTLSKSEWEATSIYLVYVFEKM 399

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9I8S2|MCES_XENLA mRNA cap guanine-N7 methyltransferase OS=Xenopus laevis GN=rnmt PE=2 SV=1

 Score =  272 bits (696), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/341 (43%), Positives = 195/341 (57%), Gaps = 48/341 (14%)

Query: 235 EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPI 294
           E G G  V  HYN+    G E+R  SRI ++RNFNNW KS LI EF+ +    Q     I
Sbjct: 69  EEGHGSLVVTHYNELPETGLEIRSQSRIFHLRNFNNWMKSALIGEFVEKV---QQRTRNI 125

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
            VLD+G GKGGD+LKW  GG+  +V  DIA VS++ C+ RY+++KRK         +F A
Sbjct: 126 TVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEQRYKDMKRKSR----NERIFEA 181

Query: 355 E----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           E          L  +Y D  ++ D+ SCQF  HYSFE+ +QA  ML+NA E L PGGFF+
Sbjct: 182 EFLTSDSTKELLSEKYIDPEIKFDICSCQFVYHYSFETYEQADTMLRNACERLCPGGFFI 241

Query: 405 GTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLV 464
           GT PD  +++ R     + SFGNDVY V   F+     PLFG KYDF+LE VVN PEFLV
Sbjct: 242 GTTPDGFELVKRLEASDTNSFGNDVYTVT--FEKKGKYPLFGCKYDFSLEEVVNVPEFLV 299

Query: 465 YFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHK---------- 514
           YFP+L  +A ++ +K I K+ FR F+  K+K      LL++M ALE +            
Sbjct: 300 YFPVLVEMAKKYQMKLIYKKTFREFFEEKVKNDEQKMLLKRMKALESYPAAPNTKLVSGR 359

Query: 515 -------------------VGTLSKAEWEAITLYQVFAFEK 536
                              +GTLSK+EW+A ++Y +FAFEK
Sbjct: 360 TEDYEHAQKMVENGQIKLPLGTLSKSEWDATSIYLLFAFEK 400

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q61E36|MCES_CAEBR mRNA cap guanine-N7 methyltransferase OS=Caenorhabditis briggsae GN=tag-72 PE=3 SV=1

 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 192/355 (54%), Gaps = 49/355 (13%)

Query: 242 VAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGS 301
           VA+HYN  +  G + RK SRI +MRN NNW KS LI++ + +  +   + SP+ VLD+  
Sbjct: 6   VADHYNNVRQAGIQDRKESRIFFMRNMNNWIKSQLINDAM-KLVNENGVKSPV-VLDIAC 63

Query: 302 GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL----- 356
           GKGGD+ KW   G KHVV AD+A VSI+  + RY+ + +      Y  ++F A+      
Sbjct: 64  GKGGDLRKWDITGAKHVVMADVADVSIQQAEERYKTMHK------YPHDIFGAQFIVADC 117

Query: 357 -RSQYEDKALEL----DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
            +   +DK +E+    DLVSCQF +HYSF     AR  LKNA   LK GG F+GT+PD++
Sbjct: 118 TKENLDDK-IEIKEPFDLVSCQFAMHYSFVDEDSARTFLKNAVGKLKLGGVFIGTLPDAD 176

Query: 412 QIMARYRRHQSASFGNDVYQV--QCLFDTSRPP-PLFGAKYDFNLEGVVNCPEFLVYFPL 468
           +I+   R      F NDV ++  + + + S    PLFGAK+ F+L+  VNCPEFL YF L
Sbjct: 177 RIVWAVRNGTEGKFANDVCKITYEKVDELSEGNVPLFGAKFHFSLDEQVNCPEFLAYFSL 236

Query: 469 LERIAGEFGLKRILKENFR---SFYL----RKIKEHAGLNLLRKMNA--------LEGHH 513
           ++ +  E  ++ +   NF    + +L    R ++   GL      N         LE   
Sbjct: 237 VKHLLEEHDMELLFVHNFAEAITNWLVPGRRLLESMKGLETFPNRNLSGKTDEEYLEAKA 296

Query: 514 K-----------VGTLSKAEWEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVTP 557
           K           VGTLSK+EWEAI +Y VF F K K     ++    P+  KVTP
Sbjct: 297 KIDSLGDNVPKFVGTLSKSEWEAICMYLVFGFRK-KKTTEKNLESEAPEIKKVTP 350

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9XVS1|MCES_CAEEL mRNA cap guanine-N7 methyltransferase OS=Caenorhabditis elegans GN=tag-72 PE=3 SV=2

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 183/339 (53%), Gaps = 52/339 (15%)

Query: 242 VAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGS 301
           VA HYN+   VG E RK SRI +MRN NNW KS LI++   R  +   + +P +VLD+  
Sbjct: 6   VASHYNKVLQVGIEGRKESRIFFMRNMNNWVKSQLINDAKQRV-NDNGVNNP-RVLDLAC 63

Query: 302 GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN-VFSAEL---- 356
           GKGGD+ KW   G K VV AD+A VSI+  + RY+++        Y++N +F+ +     
Sbjct: 64  GKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQM------FGYKKNNIFTVQFIVAD 117

Query: 357 --RSQYEDKALE---LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
             +   ED+       DLVSCQF +HYSF     AR  LKNA   LKPGG F+GT+PD++
Sbjct: 118 CTKENLEDRIENKDPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDAD 177

Query: 412 QIMARYRRHQSASFGNDVYQV--QCLFDTSRPP-PLFGAKYDFNLEGVVNCPEFLVYFPL 468
           +I+   R  ++  F N+V ++  + + + +    PLFGAK+ F+L+  VNCPEFL YFPL
Sbjct: 178 RIVWSMRNGENGQFANEVCKITYENVEELAEGKVPLFGAKFHFSLDEQVNCPEFLAYFPL 237

Query: 469 LERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGH---------------- 512
           ++ +  E  ++ +   NF     + ++   G  LL  M  LE +                
Sbjct: 238 VKHLLEELDMELLFVHNFAEAINKWLE--PGRRLLESMTGLETYPNEKLSGKSDDEYLEA 295

Query: 513 -------------HKVGTLSKAEWEAITLYQVFAFEKVK 538
                          +GTLSK+EWEAI +Y VF F K K
Sbjct: 296 KAKLDAFPEDERIKTMGTLSKSEWEAICMYLVFGFRKKK 334

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	597
91094829	384	PREDICTED: similar to mrna (guanine-7-)m	0.510	0.794	0.466	6e-86
157130198	419	mrna (guanine-7-)methyltransferase [Aede	0.494	0.704	0.485	7e-86
170038879	434	mRNA cap guanine-N7 methyltransferase [C	0.581	0.799	0.426	1e-84
156550897	452	PREDICTED: mRNA cap guanine-N7 methyltra	0.606	0.800	0.416	2e-82
383847334	438	PREDICTED: mRNA cap guanine-N7 methyltra	0.509	0.694	0.44	3e-81
198476397	408	GA17612 [Drosophila pseudoobscura pseudo	0.594	0.870	0.420	1e-80
307182084	457	mRNA cap guanine-N7 methyltransferase [C	0.626	0.818	0.383	2e-80
332030377	454	mRNA cap guanine-N7 methyltransferase [A	0.564	0.742	0.414	2e-80
195155913	408	GL26022 [Drosophila persimilis] gi|19411	0.594	0.870	0.420	3e-80
158290166	383	AGAP003460-PA [Anopheles gambiae str. PE	0.537	0.838	0.436	8e-80

>gi|91094829|ref|XP_971254.1| PREDICTED: similar to mrna (guanine-7-)methyltransferase [Tribolium castaneum]

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 162/347 (46%), Positives = 223/347 (64%), Gaps = 42/347 (12%)

Query: 237 GLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKV 296
           G  + VA HYN  +  G + R  SRIVYMRNF+NW KSMLI+E+LT+ K  +   +P++V
Sbjct: 34  GYAKVVATHYNLLEEKGLDERSKSRIVYMRNFHNWIKSMLINEYLTKIKDGKKHNAPVRV 93

Query: 297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE- 355
           LDM  GKGGD+LKW  G + H++ +DIASVS++ C++RY ++K +        N++S E 
Sbjct: 94  LDMCCGKGGDLLKWRKGNITHLICSDIASVSLDQCRSRYNDMKERSSRERNGGNIYSIEY 153

Query: 356 ---------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406
                    LR +Y D +++LDLVSCQF  HYSFES+ QA CM++NA+ECL+PGGFF+GT
Sbjct: 154 IAGDCSRVRLREKYTDPSMKLDLVSCQFAFHYSFESLPQAECMIRNASECLQPGGFFIGT 213

Query: 407 VPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYF 466
           +PD+N ++AR RR  + +FGNDVYQV    D ++ PPLFGAKY+F+L+GVV+CPEFLV+F
Sbjct: 214 IPDANDLIARARRADANTFGNDVYQVHFDCDVNK-PPLFGAKYNFHLDGVVDCPEFLVHF 272

Query: 467 PLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGH-------------- 512
           P L ++A ++GLK + KE F  +Y +   E  G  LL  M +LE +              
Sbjct: 273 PTLIKLARKYGLKFVKKEKFYDYYEQMKNE--GRQLLINMKSLETYPPYDNTPLLGTDPG 330

Query: 513 ---------------HKVGTLSKAEWEAITLYQVFAFEKVKGKVTPD 544
                           K+GTLSK+EWEA +LY +F FEKVK     D
Sbjct: 331 DYIHAEEFLKKEGKNGKIGTLSKSEWEASSLYMLFVFEKVKNTWNTD 377

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130198|ref|XP_001655637.1| mrna (guanine-7-)methyltransferase [Aedes aegypti] gi|108871994|gb|EAT36219.1| AAEL011698-PA [Aedes aegypti]

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 163/336 (48%), Positives = 214/336 (63%), Gaps = 41/336 (12%)

Query: 241 TVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMG 300
            VA HYN+ +  G   R  SRI YMRNFNNW KS+LI+ +L R K    LG+P++V+DM 
Sbjct: 75  VVASHYNKLEERGLYERSKSRIFYMRNFNNWIKSILINRYLDRIKDKAALGTPLRVMDMC 134

Query: 301 SGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE--ARPYRRNVFSAE--- 355
            GKGGD+LKWI G + H++  DIA VS+E C+ RY  + +K +   +P+    F+A+   
Sbjct: 135 CGKGGDLLKWIKGNITHLICTDIAEVSVEQCEARYNNINQKNDQGGKPFTAEFFAADATL 194

Query: 356 --LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
             LR +Y D +++L LVSCQF  HY FES++QA  MLKNAAECLK GG+F+GT+PD+N+I
Sbjct: 195 QRLREKYRDPSIDLHLVSCQFAFHYCFESLKQAEFMLKNAAECLKEGGYFIGTIPDANEI 254

Query: 414 MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIA 473
           M R R     SFGNDVY++  L DT + PPLFGAKY+F L+GVV+CPEFLV+FP L ++A
Sbjct: 255 MKRQRAAGGDSFGNDVYKISFLCDTEK-PPLFGAKYNFQLDGVVDCPEFLVHFPTLVKLA 313

Query: 474 GEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEG---------------------- 511
            +FGL+ + K+ F  FY   +   +G  LL KM ALE                       
Sbjct: 314 LKFGLRLVEKKRFDEFYEESVS--SGRGLLEKMQALETFPGFSRDDRERQQNREEYRHAQ 371

Query: 512 ---------HHKVGTLSKAEWEAITLYQVFAFEKVK 538
                    H KVGTLSK+EWEA TLY  FAF+K+K
Sbjct: 372 QYLDRKDGRHTKVGTLSKSEWEASTLYMFFAFQKMK 407

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038879|ref|XP_001847275.1| mRNA cap guanine-N7 methyltransferase [Culex quinquefasciatus] gi|167862466|gb|EDS25849.1| mRNA cap guanine-N7 methyltransferase [Culex quinquefasciatus]

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/424 (42%), Positives = 241/424 (56%), Gaps = 77/424 (18%)

Query: 170 EDAEQFIQETVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQS 229
           E+AE    ET     V   EE + T+ P  DD E        GE S ++     P  D  
Sbjct: 21  EEAEDQQPETASSSEVLPVEEGKTTKHPHSDDEE------ADGEPSANV-----PSKDPQ 69

Query: 230 ELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQP 289
             T         VA HYNQ K  G   R  SRI YMRNFNNW KS+LI+ +L + +    
Sbjct: 70  HTT--------VVASHYNQLKERGLYERSKSRIFYMRNFNNWIKSILINRYLNKIREKAA 121

Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR 349
           LG+P++V+DM  GKGGD+LKW  G + H++  DIA+VS+E C+TRY+ + + +       
Sbjct: 122 LGTPLRVMDMCCGKGGDLLKWSKGNITHLICTDIAAVSVEQCETRYKNIIQNDRGSGGGG 181

Query: 350 ----------NVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCM 389
                      VF+AE          LR +Y D ++EL+LVSCQF  HY FES++QA  M
Sbjct: 182 RNSGQSASTGKVFTAEFFAADATLQRLREKYHDASVELNLVSCQFAFHYCFESLRQAEFM 241

Query: 390 LKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY 449
           LKNAAECL+ GG+F+GT+PD+N+IM R R   S +FGNDVY++  L DT + PPLFGAKY
Sbjct: 242 LKNAAECLREGGYFIGTIPDANEIMKRQRAAGSDTFGNDVYKITFLCDTEQ-PPLFGAKY 300

Query: 450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNAL 509
           +F L+GVV+CPEFLV+FP L ++A ++GL+ + K+ F  FY   ++  +G  L+ KM AL
Sbjct: 301 NFQLDGVVDCPEFLVHFPTLIKLALKYGLRLVEKQRFDEFYSESVQ--SGRGLIEKMQAL 358

Query: 510 E-----------------------GH------------HKVGTLSKAEWEAITLYQVFAF 534
           E                       GH             KVGTLSK+EWEA TLY  FAF
Sbjct: 359 ETFPGQSRDERERQQNLSEYSHAQGHLDKKGAGGGGRFQKVGTLSKSEWEASTLYMFFAF 418

Query: 535 EKVK 538
           +K+K
Sbjct: 419 QKMK 422

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550897|ref|XP_001602514.1| PREDICTED: mRNA cap guanine-N7 methyltransferase-like [Nasonia vitripennis]

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/403 (41%), Positives = 244/403 (60%), Gaps = 41/403 (10%)

Query: 171 DAEQFIQETVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSP-CSDQS 229
           DAE    +  + + + + EE   ++   + DT+E++       D ++  +S+ P   D S
Sbjct: 42  DAEPATSDPKLTRKLNEDEESPPSKIKRKSDTDESSQFYNLPSDLSTSSSSREPEKKDDS 101

Query: 230 ELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQP 289
           E +   A L   VA HYN  +  G   R  SRIVYMRNFNNW KSMLI+E+L + +  + 
Sbjct: 102 EKSTDHANL---VANHYNTLEEKGLAERNKSRIVYMRNFNNWVKSMLINEYLEKVRQGKS 158

Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR 349
            G P++VLDM  GKGGD+LKW  G + +++ ADIA VS+E C+ RY+++  K     +  
Sbjct: 159 HGEPLRVLDMCCGKGGDLLKWRKGNISYLICADIAEVSVEQCRNRYKDMGGKRYPPLFGA 218

Query: 350 NVFSAE-----LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
              + +     LR +Y+D +++LDLVSCQF  HYSFE++ QA CM KNA+E L+PGG+F+
Sbjct: 219 EFLAYDCTKVRLREKYKDASMQLDLVSCQFAFHYSFETLPQAECMFKNASESLRPGGYFI 278

Query: 405 GTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLV 464
           GT+P++ ++++R+++     FGN++Y V+   D +  PPLFGAKY F+LEGVVNCPEFLV
Sbjct: 279 GTIPNAYELVSRWQKADGNKFGNEIYSVEFSCDKTN-PPLFGAKYVFHLEGVVNCPEFLV 337

Query: 465 YFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE-------------- 510
           + P   ++A +FGL+ I+ E F  FY R+ ++  G  LL KM ALE              
Sbjct: 338 HLPTFIKLAWKFGLELIMFERFDEFYERRKED--GKTLLGKMLALETYPPYHEAPLLAEN 395

Query: 511 ---------------GHHKVGTLSKAEWEAITLYQVFAFEKVK 538
                          GH K+GTLS++EWEAITLY VFAF K +
Sbjct: 396 SQEYQHAVEYMQTSTGHRKIGTLSQSEWEAITLYSVFAFRKAR 438

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847334|ref|XP_003699309.1| PREDICTED: mRNA cap guanine-N7 methyltransferase-like [Megachile rotundata]

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/350 (44%), Positives = 219/350 (62%), Gaps = 46/350 (13%)

Query: 242 VAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGS 301
           VA+HYN   N     R  SRI+YMRNFNNW KSMLI E+  + K  +  GSP+KVLDM  
Sbjct: 92  VAKHYNSLANEDNCNRNRSRILYMRNFNNWIKSMLISEYTDKVKEHKVYGSPLKVLDMCC 151

Query: 302 GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE------ 355
           GKGGD+ KW    V HV+ AD+A +SIE C+ RY++L +    +     +F+AE      
Sbjct: 152 GKGGDLFKWEKAKVSHVICADLAEISIEQCQQRYKDLLKSSANKRDPTPLFTAEFITADC 211

Query: 356 ----LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
               LR++++D +++LD VSCQF  HY FE++QQA CM+KNA+ECLKPGG+FVGT+P++ 
Sbjct: 212 TKVHLRTKFKDPSIQLDFVSCQFAFHYCFETLQQAECMMKNASECLKPGGYFVGTIPNAY 271

Query: 412 QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLER 471
            +++R+++    SFGND+Y ++   D ++PP LFGAKY F LE +VNCPEFLVY P+L +
Sbjct: 272 DLVSRWQKCDGNSFGNDIYNIEFCCDKTKPP-LFGAKYHFQLESLVNCPEFLVYLPVLNK 330

Query: 472 IAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGH------------------- 512
           +A +FGL+ ++ + F  +Y  +  ++ G  LL KM ALE +                   
Sbjct: 331 LAQKFGLELVMFKRFDEYY--ETMKNKGKFLLNKMQALETYPPQQGTKLLGKPDEDYQHV 388

Query: 513 ----------HKVGTLSKAEWEAITLYQVFAFEKVK----GKVTPDVGKL 548
                     HK+GTLS+++W+ ITLY VF F+K+K     K  P+  KL
Sbjct: 389 KQHARNVSDRHKIGTLSQSDWDIITLYAVFVFQKMKTVWNSKGKPEYVKL 438

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476397|ref|XP_001357357.2| GA17612 [Drosophila pseudoobscura pseudoobscura] gi|198137675|gb|EAL34426.2| GA17612 [Drosophila pseudoobscura pseudoobscura]

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 234/397 (58%), Gaps = 42/397 (10%)

Query: 179 TVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQE-AG 237
           ++ EQNV D +  +  +     D EE+     +   + ++ A Q       +   QE A 
Sbjct: 2   SIYEQNVADEKFAKAHKIVSLSDDEESESNAESATTAAAINAGQDDAVGGDDEEAQEGAA 61

Query: 238 LGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVL 297
               VA HYN+ K  G   R+ S+I +MRNFNNW KSMLI+E++   K S+ +G  ++VL
Sbjct: 62  NAHVVASHYNELKEGGRRDRQKSKIFFMRNFNNWIKSMLINEYMALIKESKRVGDALRVL 121

Query: 298 DMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-- 355
           DM  GKGGD+LKW    + H++  DIA VS+E C+ RY+++  + E   Y  N F+AE  
Sbjct: 122 DMCCGKGGDLLKWEKAAITHIICTDIAEVSVEQCQRRYQDILERAEKSKY-ANKFTAEFF 180

Query: 356 --------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
                   LR +Y+D  L+L+LVSCQF  HY FES+ QA CM++NAAECL+PGG+F+ T+
Sbjct: 181 ACDSTLVRLRERYKDVTLQLNLVSCQFAFHYCFESLGQADCMMRNAAECLEPGGYFIATM 240

Query: 408 PDSNQIMARYRRH--QSASFGNDVYQVQCLFDT-SRPPPLFGAKYDFNLEGVVNCPEFLV 464
           PD+ +IM R R     + SFGNDVY ++  FD  + P PLFGAKY F+LEGVV+CPEFLV
Sbjct: 241 PDAYEIMRRKREAGPDAQSFGNDVYNIK--FDCETDPLPLFGAKYQFHLEGVVDCPEFLV 298

Query: 465 YFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEG------------- 511
           +FP L ++  ++GLK + K  F  +Y   + +  G NLL++M+ LE              
Sbjct: 299 HFPTLVKLGRKYGLKLVRKTTFADYYKEALPQ--GRNLLQRMSGLESIQPQRCANDDQFA 356

Query: 512 ----------HHKVGTLSKAEWEAITLYQVFAFEKVK 538
                        +GTLSK+EWEA TLY V AF+K K
Sbjct: 357 HVQEFQASQRGRPLGTLSKSEWEATTLYLVCAFKKYK 393

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182084|gb|EFN69462.1| mRNA cap guanine-N7 methyltransferase [Camponotus floridanus]

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/449 (38%), Positives = 248/449 (55%), Gaps = 75/449 (16%)

Query: 144 QHSSHAQRTAEEMLA--IRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTERPVEDD 201
           QH S  ++    M+   I S T +S DLE              +  S + +L+      D
Sbjct: 16  QHKSDTEKFCTTMIKTEILSETDKSADLE--------------IPQSRKHKLSP-----D 56

Query: 202 TEETTITTTTGEDSTSLGASQSPCSD-----QSELTNQEAGLGQT------VAEHYNQKK 250
            E  +       +  +L AS S  SD      +E +N ++  G++      VA+HYN  +
Sbjct: 57  CEHVSKVAKYDNEEDALSASTSVPSDLTTSGNNEKSNDKSNTGRSTDNTVLVADHYNMLE 116

Query: 251 NVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKW 310
             G   R  SRIVYMRNFNNW KSMLI E++ + K  +  G+ ++VLDM  GKGGD+LKW
Sbjct: 117 EKGLSFRNQSRIVYMRNFNNWIKSMLIHEYVVKLKQGKSFGASLRVLDMCCGKGGDLLKW 176

Query: 311 INGGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAE----------LRSQ 359
               + H++  DIA VS+E C+ RY ++  RK         +F+AE          LR +
Sbjct: 177 KKANISHLICTDIAQVSLEQCQQRYSDMVNRKGSKDRGFAPIFTAEFITADCTKVRLREK 236

Query: 360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419
           + D +++LD VSCQF  HYSFES+ QA CML+NA E LKPGG+F+GT+PD+  +++R+++
Sbjct: 237 FADPSMQLDFVSCQFAFHYSFESLPQAECMLRNAGESLKPGGYFIGTIPDAYDLVSRWQK 296

Query: 420 HQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLK 479
                FGNDVY ++ + +    PPLFGAKY+F+L+GVV+CPEFLV+ P L ++A ++GL+
Sbjct: 297 CDGNKFGNDVYSIEFICEDKTKPPLFGAKYNFHLDGVVDCPEFLVHLPTLRKLASKYGLE 356

Query: 480 RILKENFRSFYLRKIKEHAGLNLLRKMNALE----------------------------- 510
            I  E F  +Y R   E  G +LL  M ALE                             
Sbjct: 357 LIAFERFDEYYERFKDE--GRSLLGNMQALETYPPYHETPLLGDPEQDYQHAVRYMQNLP 414

Query: 511 -GHHKVGTLSKAEWEAITLYQVFAFEKVK 538
             H K+GTLS++EWE  +LY +FAF+K+K
Sbjct: 415 ANHRKIGTLSQSEWEVTSLYAIFAFQKMK 443

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030377|gb|EGI70084.1| mRNA cap guanine-N7 methyltransferase [Acromyrmex echinatior]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/393 (41%), Positives = 233/393 (59%), Gaps = 56/393 (14%)

Query: 195 ERP---VEDDTEE--TTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTV--AEHYN 247
           ERP    + D EE  ++ +T    D T+ G+++       + T+    L  TV  A+HYN
Sbjct: 55  ERPSKIAKHDAEEDASSASTNVPSDLTTSGSNEK----NKDTTDANRSLDNTVLVADHYN 110

Query: 248 QKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDM 307
             +  G   R  SRIVYMRNFNNW KSMLI+E++ + +  +  G+ +KVLDM  GKGGD+
Sbjct: 111 ALEEKGLSQRNQSRIVYMRNFNNWIKSMLINEYVVKVRQGKSFGTSLKVLDMCCGKGGDL 170

Query: 308 LKWINGGVKHVVFADIASVSIEDCKTRYEEL--KRKEEARPYRRNVFSAE---------- 355
           LKW    + H++ ADIA VS+E C+ RY ++  K+  + R +   +FSAE          
Sbjct: 171 LKWKKANISHLICADIAQVSLEQCQQRYNDMVNKKGSKDRGFAP-IFSAEFITADCTKVR 229

Query: 356 LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA 415
           LR ++ D +++LD VSCQF  HYSFES+ QA CM++NA+E LKPGG+F+GT+PD+  +++
Sbjct: 230 LREKFTDPSIQLDFVSCQFAFHYSFESLSQAECMIRNASESLKPGGYFIGTIPDAYDLIS 289

Query: 416 RYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGE 475
           R++      FGNDVY V+ L +    PP FGAKY+F+L+GVV+CPEFLV+ P L ++A +
Sbjct: 290 RWQNCDGHKFGNDVYNVEFLSEDKTKPPFFGAKYNFHLDGVVDCPEFLVHLPTLCKLALK 349

Query: 476 FGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE------------------------- 510
           +GL+ +  E F  FY R   E  G +LL  M ALE                         
Sbjct: 350 YGLELVAFERFEDFYERFKNE--GRSLLGNMQALETYPPYHEAPLLGDPERDYHHAVEYM 407

Query: 511 -----GHHKVGTLSKAEWEAITLYQVFAFEKVK 538
                 H K+GTLS++EWE  +LY VF+F K+K
Sbjct: 408 QNLPANHRKIGTLSQSEWEVTSLYAVFSFRKMK 440

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195155913|ref|XP_002018845.1| GL26022 [Drosophila persimilis] gi|194114998|gb|EDW37041.1| GL26022 [Drosophila persimilis]

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 233/397 (58%), Gaps = 42/397 (10%)

Query: 179 TVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQE-AG 237
           ++ EQNV D +  +  +     D EE+     +   +  + A Q       +   QE A 
Sbjct: 2   SIYEQNVADEKFAKAHKSVSLSDDEESESNAESATTAAPINAGQDDAVGGDDEEAQEGAA 61

Query: 238 LGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVL 297
               VA HYN+ K  G   R+ S+I +MRNFNNW KSMLI+E++   K S+ +G  ++VL
Sbjct: 62  NTHVVASHYNELKEGGRRDRQKSKIFFMRNFNNWIKSMLINEYMALIKESKRVGDALRVL 121

Query: 298 DMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-- 355
           DM  GKGGD+LKW    + H++  DIA VS+E C+ RY+++  + E   Y  N F+AE  
Sbjct: 122 DMCCGKGGDLLKWEKAAITHIICTDIAEVSVEQCQRRYQDILERAEKSKY-ANKFTAEFF 180

Query: 356 --------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
                   LR +Y+D  L+L+LVSCQF  HY FES+ QA CM++NAAECL+PGG+F+ T+
Sbjct: 181 ACDSTLVRLRERYKDVTLQLNLVSCQFAFHYCFESLGQADCMMRNAAECLEPGGYFIATM 240

Query: 408 PDSNQIMARYRRH--QSASFGNDVYQVQCLFDT-SRPPPLFGAKYDFNLEGVVNCPEFLV 464
           PD+ +IM R R     + SFGNDVY ++  FD  + P PLFGAKY F+LEGVV+CPEFLV
Sbjct: 241 PDAYEIMRRKREAGPDAQSFGNDVYNIK--FDCETDPLPLFGAKYQFHLEGVVDCPEFLV 298

Query: 465 YFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEG------------- 511
           +FP L ++  ++GLK + K  F  +Y   + +  G NLL++M+ LE              
Sbjct: 299 HFPTLVKLGRKYGLKLVRKTTFADYYKEALPQ--GRNLLQRMSGLESIQPQRCANDDQFA 356

Query: 512 ----------HHKVGTLSKAEWEAITLYQVFAFEKVK 538
                        +GTLSK+EWEA TLY V AF+K K
Sbjct: 357 HVQEFQASQRGRPLGTLSKSEWEATTLYLVCAFKKYK 393

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158290166|ref|XP_311746.4| AGAP003460-PA [Anopheles gambiae str. PEST] gi|157018325|gb|EAA07382.5| AGAP003460-PA [Anopheles gambiae str. PEST]

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 221/373 (59%), Gaps = 52/373 (13%)

Query: 214 DSTSLGASQSPCSDQSELTNQEAG------LGQTVAEHYNQKKNVGTELRKNSRIVYMRN 267
           DS     + +  +D  E T QE G          VA HYN+ ++ G   RK S I +MRN
Sbjct: 3   DSEESSTAPTHTTDTEEQTQQEGGENGEKKHSAIVASHYNKLEDRGLVARKKSNIYFMRN 62

Query: 268 FNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVS 327
           FNNW KS++ID++ T  K   PLGSP +VLDM  GKGGD++KW N  V H++  DIA VS
Sbjct: 63  FNNWIKSVVIDKYTTLVKGRTPLGSPFRVLDMCCGKGGDLIKWANANVTHLICTDIAQVS 122

Query: 328 IEDCKTRY---EELKRKEEARPYRRNVFSA-----ELRSQYEDKALELDLVSCQFCIHYS 379
           +E C+ R+   ++  R  + RP +   F+A     +LR++Y D +++L LVSCQF  HYS
Sbjct: 123 LEQCENRFNTMDQWSRDSQRRP-KVEFFAADATLQQLRTKYRDPSIKLHLVSCQFAFHYS 181

Query: 380 FESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTS 439
           FES +QA CM KNAAECL+ G +F+GT+PD+N+IM R RR  S +FGND+Y++Q L DT 
Sbjct: 182 FESFKQADCMFKNAAECLEEGFYFIGTMPDANEIMKRQRRAMSDTFGNDIYRIQFLCDTD 241

Query: 440 RPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAG 499
             PPLFGAKY+F L+ VV+CPEFLV+FP  E++A + GL+ + ++ F   +        G
Sbjct: 242 N-PPLFGAKYNFQLDEVVDCPEFLVHFPTFEKLALKHGLRLVERKRFEEVFDENSSRKQG 300

Query: 500 LNLLRKMNALEGH----------------------------------HKVGTLSKAEWEA 525
             LL KM ALE +                                   +VGTLS+ EWEA
Sbjct: 301 --LLEKMQALEMYPPPYGRFNGDDQRKEPEQYQHAEEYGRQMSNRHQFRVGTLSQKEWEA 358

Query: 526 ITLYQVFAFEKVK 538
            TLY  FAF+K+K
Sbjct: 359 ATLYLFFAFQKMK 371

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	597
FB|FBgn0001974	427	l(2)35Bd "lethal (2) 35Bd" [Dr	0.474	0.662	0.457	2.2e-76
UNIPROTKB|O43148	476	RNMT "mRNA cap guanine-N7 meth	0.738	0.926	0.352	2e-73
RGD|1309242	461	Rnmt "RNA (guanine-7-) methylt	0.458	0.594	0.457	7.7e-73
UNIPROTKB|Q28FT4	405	rnmt "mRNA cap guanine-N7 meth	0.474	0.698	0.456	1.1e-70
UNIPROTKB|E2RK56	457	E2RK56 "mRNA cap guanine-N7 me	0.457	0.597	0.458	6e-70
UNIPROTKB|E1BYM1	415	RNMT "mRNA cap guanine-N7 meth	0.522	0.751	0.468	1.4e-69
UNIPROTKB|Q9I8S2	402	rnmt "mRNA cap guanine-N7 meth	0.457	0.679	0.461	1.6e-69
ZFIN|ZDB-GENE-041008-25	400	rnmt "RNA (guanine-7-) methylt	0.469	0.7	0.445	4.2e-69
UNIPROTKB|Q4R7K1	476	RNMT "mRNA cap guanine-N7 meth	0.527	0.661	0.434	2.5e-65
UNIPROTKB|F1MHQ5	477	RNMT "mRNA cap guanine-N7 meth	0.529	0.662	0.428	5.2e-65

FB|FBgn0001974 l(2)35Bd "lethal (2) 35Bd" [Drosophila melanogaster (taxid:7227)]

 Score = 699 (251.1 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
 Identities = 139/304 (45%), Positives = 200/304 (65%)

Query:   223 SPCSDQSELTNQEA-GLGQT--VAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDE 279
             S   DQ E   + A G   T  VA HYN+ K  G + R+ S+I +MRNFNNW KS LI+E
Sbjct:    63 SGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDRQKSKIFFMRNFNNWIKSQLINE 122

Query:   280 FLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK 339
             ++++ K ++ +G  ++VLDM  GKGGD+LKW    + H++  DIA VS+E C+ RY+++ 
Sbjct:   123 YMSQIKQNKRMGDALRVLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDIL 182

Query:   340 RKEEARPYRRNVFSAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCM 389
             ++ E   +  N F+AE          LR +Y+D +L+L+LVSCQF  HY FES+ QA CM
Sbjct:   183 QRSEKSKFA-NKFTAEFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCM 241

Query:   390 LKNAAECLKPGGFFVGTVPDSNQIMARYRRH--QSASFGNDVYQVQCLFDTSRPP-PLFG 446
             ++NAAECLKPGGFF+ T+PD+ +I+ R R     +  FGNDVY ++  FD    P PLFG
Sbjct:   242 MRNAAECLKPGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIE--FDCETDPLPLFG 299

Query:   447 AKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKM 506
             AKY F+LEGVV+CPEFLV+FP L ++  ++GL+ + +  F  +Y   +  H G +LL++M
Sbjct:   300 AKYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENL--HHGRHLLQRM 357

Query:   507 NALE 510
             + LE
Sbjct:   358 SGLE 361

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|O43148 RNMT "mRNA cap guanine-N7 methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 672 (241.6 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 169/480 (35%), Positives = 250/480 (52%)

Query:    98 SEAKAEEFHR---KRNKPRVQRET-----VEEAAVRSIPGHGYSHSIGEQQDISQHSSHA 149
             + AKAEE+ +   ++ K  V  ET     + E    S  G     S+  Q DI++     
Sbjct:     3 NSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRKEF 62

Query:   150 QRTAEEMLAIRSITGESFDLEDAEQFIQETVI--EQNVEDSE-EQRLTERPVXXXXXXXX 206
             +   ++++   S  G+  D    ++ +   ++  E++  D+E   +  +R          
Sbjct:    63 E---DDLVKESSSCGK--DTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKS 117

Query:   207 XXXXXXXXXXSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMR 266
                        +     P     +  N E G   TVA HYN+ + VG E R  SRI Y+R
Sbjct:   118 STGDGTQNKRKIALEDVP----EKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLR 173

Query:   267 NFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASV 326
             NFNNW KS+LI EFL + +  +     I VLD+G GKGGD+LKW  G +  +V  DIA V
Sbjct:   174 NFNNWMKSVLIGEFLEKVRQKKK--RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADV 231

Query:   327 SIEDCKTRYEELKRKEEARPYRRNVFSAE----------LRSQYEDKALELDLVSCQFCI 376
             S++ C+ RYE++K + ++  Y   +FSAE          L  ++ D  +  D+ SCQF  
Sbjct:   232 SVKQCQQRYEDMKNRRDSE-Y---IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVC 287

Query:   377 HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLF 436
             HYSFES +QA  ML+NA E L PGG+F+GT P+S +++ R    ++ SFGN++Y V+  F
Sbjct:   288 HYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK--F 345

Query:   437 DTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKE 496
                   PLFG KYDFNLEGVV+ PEFLVYFPLL  +A ++ +K + K+ F  FY  KIK 
Sbjct:   346 QKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKN 405

Query:   497 HAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVT 556
             +    LL++M ALE +      SK   E +  Y+  A      +V   +G L+    + T
Sbjct:   406 NENKMLLKRMQALEPY-PANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEAT 464

GO:0006370 "7-methylguanosine mRNA capping" evidence=IMP;TAS

GO:0003723 "RNA binding" evidence=IMP

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IDA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IMP;IDA;TAS

GO:0005730 "nucleolus" evidence=IDA

RGD|1309242 Rnmt "RNA (guanine-7-) methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 642 (231.1 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
 Identities = 130/284 (45%), Positives = 179/284 (63%)

Query:   235 EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPI 294
             E G    VA HYN+ + VG   R  SRI Y+RNFNNW KS+LI E L + +  Q     I
Sbjct:   127 EEGHSSAVAAHYNELQEVGLVKRSQSRIFYLRNFNNWIKSILIGEILEKVR--QRKNRDI 184

Query:   295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK-RKEEARPYRRNVFS 353
              VLD+G GKGGD+LKW  G +  +V ADIA +S++ C+ RYE++K R++    +     +
Sbjct:   185 TVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMKCRRDNEYIFSAEFIT 244

Query:   354 AE-----LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408
             A+     L  ++ D  +  D+ SCQF  HYSFES++QA  ML+NA   L PGG+F+GT P
Sbjct:   245 ADCSKELLVEKFHDPEMYFDICSCQFACHYSFESLEQADMMLRNACGRLNPGGYFIGTTP 304

Query:   409 DSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPL 468
             +S +++ R    ++ SFGN++Y V+  F      PLFG KYDFNLEGVV+ PEFLVYFPL
Sbjct:   305 NSFELIRRLEASETESFGNEIYTVK--FQKKGNYPLFGCKYDFNLEGVVDVPEFLVYFPL 362

Query:   469 LERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGH 512
             L  +A ++ +K I K+ F  FY  KIK +    LL++M ALE +
Sbjct:   363 LTEMAKKYNMKLIYKKTFLEFYEEKIKNNENKMLLKRMQALESY 406

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISO;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

UNIPROTKB|Q28FT4 rnmt "mRNA cap guanine-N7 methyltransferase" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 649 (233.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 136/298 (45%), Positives = 181/298 (60%)

Query:   219 GASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLID 278
             G  +SP    S+    E G G  V  HYN+    G E R  SRI ++RNFNNW KS LI 
Sbjct:    60 GEPESP----SKRPRLEEGHGSLVVTHYNELPETGLETRSQSRIFHLRNFNNWMKSALIG 115

Query:   279 EFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338
             EF+ + +        I VLD+G GKGGD+LKW  GG+  +V  DIA VS++ C+ RY++L
Sbjct:   116 EFVEKVRQRT---RNIAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEERYKDL 172

Query:   339 KRKEE-ARPYRRNVFSAE-----LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKN 392
             KRK    R +     +A+     L  +Y D  ++ D+ SCQF  HYSFE+ +QA  ML+N
Sbjct:   173 KRKSRNERVFEAEFLTADSTKELLSEKYNDPEIKFDICSCQFVYHYSFETYEQADMMLRN 232

Query:   393 AAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFN 452
             A E L PGGFF+GT PD  +++ R     + SFGNDVY V+  F+     PLFG KYDF+
Sbjct:   233 ACERLCPGGFFIGTTPDGFELVKRLEASDTNSFGNDVYTVK--FEKKGKYPLFGCKYDFS 290

Query:   453 LEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE 510
             LE VVN PEFLVYFP+L  +A ++ +K I K+ FR F+  K+K      LL++M ALE
Sbjct:   291 LEEVVNVPEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEKVKNDEQKMLLKRMKALE 348

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

UNIPROTKB|E2RK56 E2RK56 "mRNA cap guanine-N7 methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 640 (230.4 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
 Identities = 132/288 (45%), Positives = 176/288 (61%)

Query:   233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
             N E G    VA HYN+ + VG E R  SRI  +RNFNNW KS+LI+EFL + +  +    
Sbjct:   119 NLEEGHSSAVAAHYNELQEVGLEKRSQSRIFNLRNFNNWVKSVLIEEFLEKVRQKKKKQR 178

Query:   293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
              I VLD+G GKGGD+L W  G +  VV  DI  VS++ C+ RYE++K       Y   +F
Sbjct:   179 DITVLDLGWGKGGDLLNWKKGRINKVVCTDITDVSVKQCQQRYEDMKNHCRDNEY---IF 235

Query:   353 SAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
             SAE          L +++ D     D+ SCQF  HYSFES +QA  ML+NA E L PGG+
Sbjct:   236 SAEFVTADCSKELLINKFRDAETCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY 295

Query:   403 FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEF 462
             F+GT P+S +++ R    ++ SFGN++Y V+  F      PLF  KYDFNLEGVV+ PEF
Sbjct:   296 FIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGDYPLFSCKYDFNLEGVVDVPEF 353

Query:   463 LVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE 510
             LVYFPLL  +A ++ +K + K+ F  FY  KIK +    LL++M ALE
Sbjct:   354 LVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKHNENKMLLKRMQALE 401

GO:0005634 "nucleus" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1BYM1 RNMT "mRNA cap guanine-N7 methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 156/333 (46%), Positives = 203/333 (60%)

Query:   235 EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPI 294
             EAG GQ VA HYN+ + VG E R  SRI Y+RNFNNWTKS+LI EF+ R +  +   S I
Sbjct:    81 EAGHGQAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWTKSVLIGEFIDRVRQKK---SDI 137

Query:   295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
              VLD+G GKGGD+LKW  G +K +V  DIA +S++ CK RYE++K +   R Y   +F A
Sbjct:   138 TVLDLGCGKGGDLLKWRKGRIKKLVCTDIADISVQQCKQRYEDMKAR--CR-YNERIFDA 194

Query:   355 E----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
             E          L S+Y D     D+ SCQF  HYSFE+ +QA  MLKNA   L PGG+F+
Sbjct:   195 EFIQADSTKDLLSSKYSDPDTRFDICSCQFVYHYSFETYEQADMMLKNACGNLSPGGYFI 254

Query:   405 GTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLV 464
             GT P+S +++ R    ++ SFGNDVY V+  F+     PLFG KYDF+LE VV+ PEFLV
Sbjct:   255 GTTPNSFELVKRLEASETNSFGNDVYNVK--FEKKGEYPLFGCKYDFHLEEVVDVPEFLV 312

Query:   465 YFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWE 524
             YFPLLE +A + G+K + K  FR FY  KIK      LLR+M ALE +   G  S+   +
Sbjct:   313 YFPLLEEMAKKHGMKLVYKMTFREFYEEKIKNEEHKMLLRRMQALEPYSTFGD-SRLASD 371

Query:   525 AITLYQVFAFEKVK-GKVTPDVGKLTPDSGKVT 556
                 Y+  A E +K GK    +G L+    + T
Sbjct:   372 KPDDYE-HAKEFIKDGKAKLPLGTLSKSEWEAT 403

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

UNIPROTKB|Q9I8S2 rnmt "mRNA cap guanine-N7 methyltransferase" [Xenopus laevis (taxid:8355)]

 Score = 641 (230.7 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
 Identities = 131/284 (46%), Positives = 176/284 (61%)

Query:   235 EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPI 294
             E G G  V  HYN+    G E+R  SRI ++RNFNNW KS LI EF+ +    Q     I
Sbjct:    69 EEGHGSLVVTHYNELPETGLEIRSQSRIFHLRNFNNWMKSALIGEFVEKV---QQRTRNI 125

Query:   295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE-ARPYRRNVFS 353
              VLD+G GKGGD+LKW  GG+  +V  DIA VS++ C+ RY+++KRK    R +     +
Sbjct:   126 TVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEQRYKDMKRKSRNERIFEAEFLT 185

Query:   354 AE-----LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408
             ++     L  +Y D  ++ D+ SCQF  HYSFE+ +QA  ML+NA E L PGGFF+GT P
Sbjct:   186 SDSTKELLSEKYIDPEIKFDICSCQFVYHYSFETYEQADTMLRNACERLCPGGFFIGTTP 245

Query:   409 DSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPL 468
             D  +++ R     + SFGNDVY V   F+     PLFG KYDF+LE VVN PEFLVYFP+
Sbjct:   246 DGFELVKRLEASDTNSFGNDVYTVT--FEKKGKYPLFGCKYDFSLEEVVNVPEFLVYFPV 303

Query:   469 LERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGH 512
             L  +A ++ +K I K+ FR F+  K+K      LL++M ALE +
Sbjct:   304 LVEMAKKYQMKLIYKKTFREFFEEKVKNDEQKMLLKRMKALESY 347

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

ZFIN|ZDB-GENE-041008-25 rnmt "RNA (guanine-7-) methyltransferase" [Danio rerio (taxid:7955)]

 Score = 637 (229.3 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 130/292 (44%), Positives = 182/292 (62%)

Query:   226 SDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCK 285
             S   +L  +++   Q VA HYN+ K  G   R  SRIVYMRNFNNW KS+LI E L + +
Sbjct:    57 SPSKKLVTEDSLHSQKVATHYNKIKECGLAERNKSRIVYMRNFNNWLKSVLIAEILDKVR 116

Query:   286 SSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEA- 344
               +     + VLD+G GKGGD+LKW  G +  +V ADIA+VSIE C+ RY +++R+    
Sbjct:   117 QKR---REVTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPN 173

Query:   345 -RPYRRNVFSAE-----LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLK 398
              R +     +A+     L  + +D  L+ D+ SCQF  HYSFES  QA  ML+NA E L+
Sbjct:   174 DRTFSAEFITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLR 233

Query:   399 PGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVN 458
             PGGFF+GT PD+ +++ R     S SFGN+V+ V   F      PLFG +YDF+LEGVVN
Sbjct:   234 PGGFFIGTTPDAYELVKRLEESDSNSFGNEVFSVT--FQKKGEYPLFGCQYDFSLEGVVN 291

Query:   459 CPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE 510
              PEFLVYFPL   +A ++ ++ + K+ F+ F+  K+K+    +L++ M ALE
Sbjct:   292 VPEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEEKVKDGKNKDLMQWMQALE 343

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q4R7K1 RNMT "mRNA cap guanine-N7 methyltransferase" [Macaca fascicularis (taxid:9541)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 145/334 (43%), Positives = 198/334 (59%)

Query:   233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
             N E G    VA HYN+ + VG E R  SRI Y+RNFNNW KS+LI EFL + +  +    
Sbjct:   140 NLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKK--R 197

Query:   293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
              I VLD+G GKGGD+LKW  G +  +V  DIA VSI+ C+ RYE++K + ++  Y   +F
Sbjct:   198 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSIKQCQQRYEDMKNRRDSE-Y---IF 253

Query:   353 SAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
             SAE          L  ++ D  +  D+ SCQF  HYSFES +QA  ML+NA E L PGG+
Sbjct:   254 SAEFITADCSKELLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY 313

Query:   403 FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEF 462
             F+GT P+S +++ R    ++ SFGN++Y V+  F      PLFG KYDFNLEGVV+ PEF
Sbjct:   314 FIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGDYPLFGCKYDFNLEGVVDVPEF 371

Query:   463 LVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAE 522
             LVYFPLL  +A ++ +K + K+ F  FY  KIK +    LL++M ALE +      SK  
Sbjct:   372 LVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPY-PANESSKLV 430

Query:   523 WEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVT 556
              E +  Y+  A      +V   +G L+    + T
Sbjct:   431 SERVDDYEHAAKYMKNSQVKLPLGTLSKSEWEAT 464

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

UNIPROTKB|F1MHQ5 RNMT "mRNA cap guanine-N7 methyltransferase" [Bos taurus (taxid:9913)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 143/334 (42%), Positives = 196/334 (58%)

Query:   233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
             N E G    VA HYN+ + VG E R  SRI Y+RNFNNW KS+LI EFL + +  +    
Sbjct:   140 NLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRN- 198

Query:   293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
              I VLD+G GKGGD+LKW  G +  +V  DIA VS+  C+ RYE++K +     Y   +F
Sbjct:   199 -ITVLDLGCGKGGDLLKWKKGRIDKLVCTDIADVSVRQCQQRYEDMKNRCRDNEY---IF 254

Query:   353 SAE----------LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
             SAE          L  ++ D+ +  D+ SCQF  HYSFES +QA  ML+NA E L PGG+
Sbjct:   255 SAEFITADCSKELLTDKFRDREMCFDICSCQFVCHYSFESYEQADVMLRNACERLSPGGY 314

Query:   403 FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEF 462
             F+GT P+S +++ R    ++ SFGN++Y V+  F      PLFG KYDFNLEGVV+ PEF
Sbjct:   315 FIGTTPNSFELIRRLEASETESFGNEIYTVK--FQKKGDYPLFGCKYDFNLEGVVDVPEF 372

Query:   463 LVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAE 522
             LVYFPLL  +A ++ +K + K+ F  FY  KIK +    LL++M ALE +      S+  
Sbjct:   373 LVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPY-PANENSRLA 431

Query:   523 WEAITLYQVFAFEKVKGKVTPDVGKLTPDSGKVT 556
              E +  Y+  A      +V   +G L+    + T
Sbjct:   432 SEKVGDYEHAAKYMKNSQVKLPLGTLSKSEWEAT 465

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
4th Layer	2.1.1.56	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	597
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	2e-97
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-09
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	3e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-06
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	1e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-04
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.002

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  299 bits (768), Expect = 2e-97
 Identities = 124/326 (38%), Positives = 178/326 (54%), Gaps = 28/326 (8%)

Query: 235 EAGLGQTVAEHYNQKKNVGT--ELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
           E+ +   VA HYN+    G   + R++S I  +RNFNNW KS+LI  +      +     
Sbjct: 7   ESNIVDIVAAHYNELPESGIDLKKRQDSTIDQLRNFNNWIKSLLISLY---ASKTFQDKP 63

Query: 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY----- 347
             KVLD+  GKGGD+ K+  GG+  ++  DIA VSIE  + RY +L  + +++ Y     
Sbjct: 64  KRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFI 123

Query: 348 ----RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
                 + F + +R  +E    + D+VS QF IHYSFES ++AR ML+N AE L  GG F
Sbjct: 124 AEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKF 183

Query: 404 VGTVPDSNQIMARYRRHQS--ASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-NCP 460
           +GT PD + I+ +         SFGN +Y V   F+   P P FG KY +NLE +V + P
Sbjct: 184 IGTTPDGDFIIKKLTATFVEHKSFGNSIYYVS--FEKDPPRPPFGIKYVYNLEDMVTDVP 241

Query: 461 EFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE--GHHK---- 514
           E+LV F  L  +A E+GL+ + K+ F   Y  +IK++    L+ +M+ LE          
Sbjct: 242 EYLVPFETLVELAEEYGLELVDKKTFHDIYNEEIKKYRSKMLINRMSGLESRPATYFELN 301

Query: 515 ---VGTLSKAEWEAITLYQVFAFEKV 537
              +GTL   EWEA+ LY VF FEK 
Sbjct: 302 RLALGTLEGDEWEALLLYLVFVFEKR 327

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           +VLD+G G G   L   +G    V   DI+ V++E  +      K           V   
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR------KAAAALLADNVEVLKG 54

Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           +      +     D++     +H+  E + +    L+ A   LKPGG  V
Sbjct: 55  DAEELPPEADESFDVIISDPPLHHLVEDLAR---FLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 32/134 (23%)

Query: 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRY 335
           L+   L R K         +VLD+G G  G +L+ +      V   D +  ++       
Sbjct: 12  LLARLLPRLKP------GGRVLDIGCG-TGILLRLLRERGFDVTGVDPSPAAVLIFSLFD 64

Query: 336 EELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAE 395
                   A  Y                    DL++         E +     +L+   E
Sbjct: 65  APD-PAVLAGKY--------------------DLITA---FE-VLEHLPDPPALLQQLRE 99

Query: 396 CLKPGGFFVGTVPD 409
            LKPGG  + + P 
Sbjct: 100 LLKPGGVLLISTPL 113

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 21/110 (19%)

Query: 297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR--PYRRNVFSA 354
           LD+G G G         G   V   D++   +   + R        +A   P+    F  
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESF-- 58

Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
                        D+V     +H+     ++A   L+  A  LKPGG  V
Sbjct: 59  -------------DVVVSSLVLHH-LPDPERA---LREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 296 VLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE 355
           +LD+G G G  +      G   V   DI+  ++E  K R  +   K         V  A 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRF-----VVADAR 55

Query: 356 LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGG 401
                E      DLV C           +Q R +L+ AA  L+PGG
Sbjct: 56  DLPFEEGSF---DLVICAGLSLDYLSP-KQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 297 LDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           LD+G G  G +L+ +            DI+  ++E      E L         R  +   
Sbjct: 1   LDIGCG-TGTLLRALLEALPGLEYTGVDISPAALEAAA---ERLAALGLLDAVRVRLDVL 56

Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
           +            D+V     +H+     +     L+N    LKPGG  
Sbjct: 57  DAIDLDPGSF---DVVVASNVLHH-LADPRAV---LRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 290 LGSPIKVLDMGSGKG--GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY 347
           L S IKVLD+G G G    +L    G    VV  DI+  +IE  K   ++L   E     
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFI 59

Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           + ++     + Q ED     D+V     +++  +       +L+     LKPGG  +
Sbjct: 60  QGDIEELP-QLQLEDN--SFDVVISNEVLNHLPDPD----KVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 290 LGSPIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY 347
           +    KVLD+  G  GDM   +  + G   VV  DI+   +E  + + ++       +  
Sbjct: 49  IKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNV 103

Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
              V  AE    + D     D V+  F +      + +A   LK     LKPGG  +
Sbjct: 104 EFVVGDAE-NLPFPDN--SFDAVTISFGLRN-VTDIDKA---LKEMYRVLKPGGRLL 153

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	597
KOG1975|consensus	389		100.0
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	100.0
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.78
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.76
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.75
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.73
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.71
PLN02244	340	tocopherol O-methyltransferase	99.69
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.68
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.64
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.6
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.6
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.56
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.56
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.56
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.54
KOG1270|consensus	282		99.54
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.54
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.52
KOG1540|consensus	296		99.51
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.5
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.49
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.48
PRK11207	197	tellurite resistance protein TehB; Provisional	99.48
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.47
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.47
PRK05785	226	hypothetical protein; Provisional	99.45
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.45
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.44
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.43
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.43
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.43
PLN02490	340	MPBQ/MSBQ methyltransferase	99.42
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.42
PRK06202	232	hypothetical protein; Provisional	99.41
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.41
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.41
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.41
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.4
PRK08317	241	hypothetical protein; Provisional	99.4
PRK12335	287	tellurite resistance protein TehB; Provisional	99.39
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.38
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.37
KOG2361|consensus	264		99.36
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.35
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.35
TIGR03438	301	probable methyltransferase. This model represents	99.34
KOG4300|consensus	252		99.34
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.31
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.29
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.28
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.28
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.28
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.27
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.27
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.27
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.26
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.25
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.25
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.24
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.24
KOG1541|consensus	270		99.24
PRK06922	677	hypothetical protein; Provisional	99.23
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.21
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.2
PRK14968	188	putative methyltransferase; Provisional	99.19
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.18
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.18
PLN02336	475	phosphoethanolamine N-methyltransferase	99.18
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.16
KOG1271|consensus	227		99.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.14
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.14
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.13
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.13
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.12
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.12
PLN03075	296	nicotianamine synthase; Provisional	99.12
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.12
PRK14967	223	putative methyltransferase; Provisional	99.11
PRK04266	226	fibrillarin; Provisional	99.1
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.08
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.08
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.05
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.04
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.04
KOG3010|consensus	261		99.04
PRK07402	196	precorrin-6B methylase; Provisional	99.02
COG4123	248	Predicted O-methyltransferase [General function pr	99.01
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.0
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.98
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.97
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.97
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.96
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.95
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.94
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.93
PRK00811	283	spermidine synthase; Provisional	98.92
PTZ00146	293	fibrillarin; Provisional	98.91
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.91
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.88
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.87
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.87
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.86
TIGR00438	188	rrmJ cell division protein FtsJ.	98.86
PRK04457	262	spermidine synthase; Provisional	98.83
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.81
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.8
PHA03411	279	putative methyltransferase; Provisional	98.8
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.79
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.77
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.75
KOG2899|consensus	288		98.75
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.75
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.74
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.73
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.73
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.72
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.71
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.71
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.7
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.7
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.7
KOG2940|consensus	325		98.69
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.69
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.67
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.67
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.67
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.65
COG2890	280	HemK Methylase of polypeptide chain release factor	98.64
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.64
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.63
PLN02366	308	spermidine synthase	98.6
PRK01581	374	speE spermidine synthase; Validated	98.59
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.55
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.55
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.54
KOG1499|consensus	346		98.52
PRK03612	521	spermidine synthase; Provisional	98.51
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.5
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.5
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.49
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.48
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.47
PLN02672	1082	methionine S-methyltransferase	98.43
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.4
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.39
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.36
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.36
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.35
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.34
PHA03412	241	putative methyltransferase; Provisional	98.34
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.3
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.28
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.27
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.27
PLN02476	278	O-methyltransferase	98.27
KOG2904|consensus	328		98.26
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.26
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.26
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.24
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.23
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.22
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.22
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.2
COG4122	219	Predicted O-methyltransferase [General function pr	98.18
KOG1269|consensus	364		98.15
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.12
KOG3045|consensus	325		98.12
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.1
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.09
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.08
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.05
PLN02823	336	spermine synthase	98.03
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.03
KOG3178|consensus	342		97.98
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.95
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.93
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.9
PRK04148	134	hypothetical protein; Provisional	97.87
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.85
COG2521	287	Predicted archaeal methyltransferase [General func	97.84
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.84
KOG1331|consensus	293		97.82
KOG3191|consensus	209		97.81
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.81
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.81
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.81
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.8
KOG1500|consensus	517		97.79
PRK00536	262	speE spermidine synthase; Provisional	97.78
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.77
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.76
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.73
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.73
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.73
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.72
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.72
KOG3420|consensus	185		97.71
KOG2352|consensus	482		97.7
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.7
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.62
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.62
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.52
KOG2798|consensus	369		97.46
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.42
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.39
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.36
KOG1661|consensus	237		97.34
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.23
KOG0820|consensus	315		97.23
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.17
KOG1663|consensus	237		97.12
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.12
KOG3987|consensus	288		97.1
COG2520	341	Predicted methyltransferase [General function pred	97.08
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.05
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.97
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.94
PF13679	141	Methyltransf_32: Methyltransferase domain	96.94
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.87
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.8
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.77
COG3897	218	Predicted methyltransferase [General function pred	96.66
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.55
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.53
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.53
KOG2915|consensus	314		96.38
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.36
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.33
KOG1709|consensus	271		96.18
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.16
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.13
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.05
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.03
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.95
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	95.87
KOG3201|consensus	201		95.84
KOG4589|consensus	232		95.74
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.65
KOG2730|consensus	263		95.62
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.5
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.4
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.36
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.31
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.15
KOG2187|consensus	534		94.96
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.86
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.79
PRK10742	250	putative methyltransferase; Provisional	94.65
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.58
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	94.57
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.4
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.38
COG4076	252	Predicted RNA methylase [General function predicti	94.11
PHA01634	156	hypothetical protein	94.1
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.09
KOG2793|consensus	248		94.09
KOG3115|consensus	249		93.93
COG0286	489	HsdM Type I restriction-modification system methyl	93.78
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	93.29
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.17
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.15
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	92.65
PRK11524	284	putative methyltransferase; Provisional	92.63
KOG1122|consensus	460		92.62
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.57
COG2384	226	Predicted SAM-dependent methyltransferase [General	92.01
PRK13699	227	putative methylase; Provisional	91.32
KOG4058|consensus	199		91.01
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.95
COG4798	238	Predicted methyltransferase [General function pred	90.94
COG1565	370	Uncharacterized conserved protein [Function unknow	90.91
KOG2671|consensus	421		90.89
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	90.88
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	90.81
KOG2198|consensus	375		90.65
KOG0024|consensus	354		90.1
KOG1253|consensus	525		90.01
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.57
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	89.52
COG3129	292	Predicted SAM-dependent methyltransferase [General	89.28
KOG1099|consensus	294		88.95
KOG2539|consensus	491		88.47
KOG1562|consensus	337		88.46
COG4301	321	Uncharacterized conserved protein [Function unknow	88.12
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	87.35
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	87.28
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.61
KOG1501|consensus	636		86.46
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	84.61
KOG1596|consensus	317		84.56
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	84.45
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.08
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	83.71
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	83.49
COG3315	297	O-Methyltransferase involved in polyketide biosynt	82.78
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	82.65
KOG2920|consensus	282		81.01
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	80.64
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	80.23

>KOG1975|consensus

Probab=100.00  E-value=1.3e-56  Score=456.25  Aligned_cols=298  Identities=42%  Similarity=0.726  Sum_probs=263.9

Q ss_pred             hhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcC
Q psy17742        235 EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGG  314 (597)
Q Consensus       235 ~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g  314 (597)
                      +.+.++.|++|||.+.+.++..|+.|+|++||+||||||++||+.|.+         ++..+||||||.|+++++|.++|
T Consensus        69 ~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~---------~~~~~~~LgCGKGGDLlKw~kAg  139 (389)
T KOG1975|consen   69 NESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTK---------RGDDVLDLGCGKGGDLLKWDKAG  139 (389)
T ss_pred             ccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhc---------cccccceeccCCcccHhHhhhhc
Confidence            456789999999999999999999999999999999999999999998         67889999999999999999999


Q ss_pred             CCEEEEEeCChHHHHHHHHHHHhhhhhcc-----ccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHH
Q psy17742        315 VKHVVFADIASVSIEDCKTRYEELKRKEE-----ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCM  389 (597)
Q Consensus       315 ~~~V~GIDiS~~mIe~A~er~~~~~~~~~-----~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~  389 (597)
                      +..++|+||++.+|++|++|+++......     ..++.+|.|...+.+.++.++.+||+|+|+|++||.|++++.++.+
T Consensus       140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~  219 (389)
T KOG1975|consen  140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIA  219 (389)
T ss_pred             ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHH
Confidence            99999999999999999999998766543     1223334444446666655544599999999999999999999999


Q ss_pred             HHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCC--CCCCCcccceeeeccccccccccCCCHH
Q psy17742        390 LKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTS--RPPPLFGAKYDFNLEGVVNCPEFLVYFP  467 (597)
Q Consensus       390 L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~--d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e  467 (597)
                      |+|+.++|||||+||+|+|+++.|+++++......|||+||+|+|.....  ...|+||.+|+|+|+++|+||||+|+++
T Consensus       220 l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~F~  299 (389)
T KOG1975|consen  220 LRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVPFP  299 (389)
T ss_pred             HHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcceeeehH
Confidence            99999999999999999999999999999988889999999999875432  2368999999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHhhceeEEEEcCCCC
Q psy17742        468 LLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKV  541 (597)
Q Consensus       468 ~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~FvF~K~~~~~  541 (597)
                      .|+.|++++||+||..++|.+||+++.+++.+..|+++|.+|+........+.+|||++++|.+|+++|..-+-
T Consensus       300 ~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ir~  373 (389)
T KOG1975|consen  300 TLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDRIRY  373 (389)
T ss_pred             HHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhcccccc
Confidence            99999999999999999999999999988744499999999986544557999999999999999999876544

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=100.00  E-value=1.3e-54  Score=456.80  Aligned_cols=298  Identities=45%  Similarity=0.796  Sum_probs=222.1

Q ss_pred             hhhhhHHHHHHHhcccccc--chhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742        235 EAGLGQTVAEHYNQKKNVG--TELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN  312 (597)
Q Consensus       235 ~~~~~~~Va~hYn~~~~~~--~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~  312 (597)
                      ....++.|++|||.++..+  ...|..|+|++||+||||||++||+.+++.+....   ++.+|||||||.|+++.+|..
T Consensus         6 ~~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~---~~~~VLDl~CGkGGDL~Kw~~   82 (331)
T PF03291_consen    6 ESDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNR---PGLTVLDLCCGKGGDLQKWQK   82 (331)
T ss_dssp             ----------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTT---TT-EEEEET-TTTTTHHHHHH
T ss_pred             cccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccC---CCCeEEEecCCCchhHHHHHh
Confidence            3457789999999998877  78899999999999999999999999998665443   678999999999999999999


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHHHhhhhhcc---------ccccccceeehhhhccCCCCCCceeEEEEccchhhhccCH
Q psy17742        313 GGVKHVVFADIASVSIEDCKTRYEELKRKEE---------ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESV  383 (597)
Q Consensus       313 ~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~---------~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~  383 (597)
                      .++..|+|+|||..+|+.|++|+........         ..++..+.|...+...++....+||+|.|+|+|||+|+++
T Consensus        83 ~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese  162 (331)
T PF03291_consen   83 AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESE  162 (331)
T ss_dssp             TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCH
Confidence            9999999999999999999999955432211         1112233343335555666556899999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh----hccCccCCceEEEEecCCCCCCCCCcccceeeeccccc-c
Q psy17742        384 QQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR----HQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-N  458 (597)
Q Consensus       384 ~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~----~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~V-n  458 (597)
                      +.++.+|++++.+|+|||+||+|+|+++.|..+++.    .....|||++|+|.|+.+  +..|.||.+|.|+|+++| +
T Consensus       163 ~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~--~~~~~fG~~Y~F~L~~~v~~  240 (331)
T PF03291_consen  163 EKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD--DFFPPFGAKYDFYLEDAVDD  240 (331)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC--SS--CTTEEEEEEETTCSSC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc--CCCCCCCcEEEEEecCcCCC
Confidence            999999999999999999999999999999988887    456789999999999985  578899999999999999 9


Q ss_pred             ccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCC-----------cccCCCHHHHHHHH
Q psy17742        459 CPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHH-----------KVGTLSKAEWEAIT  527 (597)
Q Consensus       459 ~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~-----------~~g~Ls~~E~E~~~  527 (597)
                      ||||||+++.|++||+++||++|+..+|++||+++.++.....|+++|.+++...           ..++||++|||+++
T Consensus       241 ~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~  320 (331)
T PF03291_consen  241 CPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAAS  320 (331)
T ss_dssp             EEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHC
T ss_pred             CceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHH
Confidence            9999999999999999999999999999999999887755447999999887432           24689999999999


Q ss_pred             -hhceeEEEEc
Q psy17742        528 -LYQVFAFEKV  537 (597)
Q Consensus       528 -LY~~FvF~K~  537 (597)
                       ||++|||+|.
T Consensus       321 ~lY~~F~F~K~  331 (331)
T PF03291_consen  321 SLYLVFAFKKK  331 (331)
T ss_dssp             TTEEEEEEEE-
T ss_pred             hheEEEEEEeC
Confidence             9999999995

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.78  E-value=6.1e-18  Score=172.26  Aligned_cols=208  Identities=17%  Similarity=0.262  Sum_probs=135.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+......     +...+..+..+...++||+|+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~-----~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQ-----FIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceE-----EEEcCHHHHhhhcCCCCCEEE
Confidence            46799999999999999999887 499999999999999999887655432221     333332221112235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..++||+    .++..+|+++.++|||||+|++...+...+.....-     .++      |+.. ....+ .....  
T Consensus       118 ~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~-----~~~------~~~~-~~~~~-~~~~~--  178 (255)
T PRK11036        118 FHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMV-----AGN------FDYV-QAGMP-KRKKR--  178 (255)
T ss_pred             ehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHH-----ccC------hHHH-HhcCc-ccccc--
Confidence            99999998    667799999999999999999998887654221100     111      0000 00000 00000  


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEE---ecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHh
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE---NFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITL  528 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~---~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~L  528 (597)
                      .     -.|.+.++++.+.++++++||+++...   .|++|........   .+++++..++.    ..-..+.+--++-
T Consensus       179 ~-----~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~~~~~---~~~~~~~~~e~----~~~~~~~~~~~~~  246 (255)
T PRK11036        179 T-----LSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNKHQQR---DCFEALLELEQ----RYCRQEPYISLGR  246 (255)
T ss_pred             C-----CCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCcccccc---chHHHHHHHHH----HHhcCCchhhhhh
Confidence            0     123456789999999999999999776   4666654433222   24455544441    1112244444578


Q ss_pred             hceeEEEE
Q psy17742        529 YQVFAFEK  536 (597)
Q Consensus       529 Y~~FvF~K  536 (597)
                      |.+++++|
T Consensus       247 ~~h~~~~~  254 (255)
T PRK11036        247 YIHVTARK  254 (255)
T ss_pred             HheEEEeC
Confidence            99999987

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.76  E-value=4.5e-17  Score=171.80  Aligned_cols=161  Identities=14%  Similarity=0.075  Sum_probs=111.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|||+|+.|++.|+.+..........     .+...+ .+.++...++||+|+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i-----~~~~~d-ae~l~~~~~~FD~Vi  203 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTI-----EYLCTT-AEKLADEGRKFDAVL  203 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccce-----eEEecC-HHHhhhccCCCCEEE
Confidence            56799999999999999888877 49999999999999999875443221111     022222 233444446899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..+|||+    .++..+|+++.++|||||.|++++++.........-     .+ .-|...+       .+..++.+  
T Consensus       204 ~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i-----~~-~eyi~~~-------lp~gth~~--  264 (322)
T PLN02396        204 SLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTI-----VG-AEYILRW-------LPKGTHQW--  264 (322)
T ss_pred             EhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhh-----hh-HHHHHhc-------CCCCCcCc--
Confidence            99999998    678899999999999999999999987532111000     00 0000000       01001111  


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                               ..+++++++.++++++||++++...+.
T Consensus       265 ---------~~f~tp~eL~~lL~~aGf~i~~~~G~~  291 (322)
T PLN02396        265 ---------SSFVTPEELSMILQRASVDVKEMAGFV  291 (322)
T ss_pred             ---------cCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence                     125789999999999999999887654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.75  E-value=1.1e-17  Score=168.89  Aligned_cols=204  Identities=20%  Similarity=0.236  Sum_probs=136.7

Q ss_pred             HhhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742        233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN  312 (597)
Q Consensus       233 ~~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~  312 (597)
                      .....+++.|+..||...          .+..+.....|- ..++.....        +++.+|||||||||..+..+++
T Consensus        11 ~~v~~vF~~ia~~YD~~n----------~~~S~g~~~~Wr-~~~i~~~~~--------~~g~~vLDva~GTGd~a~~~~k   71 (238)
T COG2226          11 EKVQKVFDKVAKKYDLMN----------DLMSFGLHRLWR-RALISLLGI--------KPGDKVLDVACGTGDMALLLAK   71 (238)
T ss_pred             HHHHHHHHhhHHHHHhhc----------ccccCcchHHHH-HHHHHhhCC--------CCCCEEEEecCCccHHHHHHHH
Confidence            345667888888887753          222333334562 223333222        2689999999999999999887


Q ss_pred             c-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHH
Q psy17742        313 G-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLK  391 (597)
Q Consensus       313 ~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~  391 (597)
                      . |..+|+|+|+|+.|++.|+++..+.+... .      .|.....+.+|.++.+||+|++.++|+++    .+...+|+
T Consensus        72 ~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i------~fv~~dAe~LPf~D~sFD~vt~~fglrnv----~d~~~aL~  140 (238)
T COG2226          72 SVGTGEVVGLDISESMLEVAREKLKKKGVQN-V------EFVVGDAENLPFPDNSFDAVTISFGLRNV----TDIDKALK  140 (238)
T ss_pred             hcCCceEEEEECCHHHHHHHHHHhhccCccc-e------EEEEechhhCCCCCCccCEEEeeehhhcC----CCHHHHHH
Confidence            5 35699999999999999999988765543 2      34433455677777889999999999998    89999999


Q ss_pred             HHHHhccCCcEEEEEeCCh---hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccc-------ceeeeccccccccc
Q psy17742        392 NAAECLKPGGFFVGTVPDS---NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA-------KYDFNLEGVVNCPE  461 (597)
Q Consensus       392 ~i~rlLKPGG~fIit~pn~---~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~-------~Y~F~L~d~Vn~pE  461 (597)
                      +++|+|||||++++.-...   ..+...+....   + +            ...|.+|.       .|. +|.+++   +
T Consensus       141 E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~---~-~------------~v~P~~g~~~~~~~~~y~-yL~eSi---~  200 (238)
T COG2226         141 EMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYY---F-K------------YVLPLIGKLVAKDAEAYE-YLAESI---R  200 (238)
T ss_pred             HHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHH---H-H------------hHhhhhceeeecChHHHH-HHHHHH---H
Confidence            9999999999988765444   12211111100   0 0            01122222       122 122222   2


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        462 FLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       462 Ylv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      .....++|.++++++||+.+.+.++
T Consensus       201 ~~p~~~~l~~~~~~~gf~~i~~~~~  225 (238)
T COG2226         201 RFPDQEELKQMIEKAGFEEVRYENL  225 (238)
T ss_pred             hCCCHHHHHHHHHhcCceEEeeEee
Confidence            3567889999999999999885543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.73  E-value=1.3e-17  Score=168.60  Aligned_cols=170  Identities=18%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|..+..+++. + ..+|+|+|+|+.|++.|+++....+....       .+.....+.++.++++||+
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i-------~~v~~da~~lp~~d~sfD~  119 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNI-------EFVQGDAEDLPFPDNSFDA  119 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SE-------EEEE-BTTB--S-TT-EEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCe-------eEEEcCHHHhcCCCCceeE
Confidence            5789999999999999988764 2 35899999999999999999887654321       2333334456666678999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccc
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA  447 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~  447 (597)
                      |+|.|++|.+    +++.++|++++|+|||||.|++.-.+.  ..+...+-..    +-..+  +.+-.   .....-..
T Consensus       120 v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~----y~~~i--lP~~g---~l~~~~~~  186 (233)
T PF01209_consen  120 VTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKF----YFKYI--LPLIG---RLLSGDRE  186 (233)
T ss_dssp             EEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------
T ss_pred             EEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeee----eeccc--ccccc---cccccccc
Confidence            9999999998    678899999999999999988654332  1222222110    00000  00000   00000001


Q ss_pred             ceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        448 KYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       448 ~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                      .|. +|.+++.   .+.+.+++.++++++||+.|...+
T Consensus       187 ~Y~-yL~~Si~---~f~~~~~~~~~l~~~Gf~~v~~~~  220 (233)
T PF01209_consen  187 AYR-YLPESIR---RFPSPEELKELLEEAGFKNVEYRP  220 (233)
T ss_dssp             --------------------------------------
T ss_pred             ccc-ccccccc---cccccccccccccccccccccccc
Confidence            233 2333332   256788999999999999987654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.71  E-value=2e-17  Score=165.40  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=116.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++++|||+|||.|.++..+++.| ..|+|+|+++.+|+.|+.+..+.+....        +.....+.+....++||+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~--------y~~~~~edl~~~~~~FDvV~  129 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNID--------YRQATVEDLASAGGQFDVVT  129 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccccc--------chhhhHHHHHhcCCCccEEE
Confidence            67999999999999999999999 5999999999999999999887766521        12222233434346899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..+|+|+    +++..+++++.++|||||.++++++|.......+.-..    +..+.++ ++.        -.+.|  
T Consensus       130 cmEVlEHv----~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~----ae~vl~~-vP~--------gTH~~--  190 (243)
T COG2227         130 CMEVLEHV----PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG----AEYVLRI-VPK--------GTHDY--  190 (243)
T ss_pred             EhhHHHcc----CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH----HHHHHHh-cCC--------cchhH--
Confidence            99999998    88899999999999999999999999865444332211    1111111 111        11112  


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                               .-++.++++...+...|+++.....+
T Consensus       191 ---------~k~irp~El~~~~~~~~~~~~~~~g~  216 (243)
T COG2227         191 ---------RKFIKPAELIRWLLGANLKIIDRKGL  216 (243)
T ss_pred             ---------HHhcCHHHHHHhcccCCceEEeecce
Confidence                     12578899999999999999877644

>PLN02244 tocopherol O-methyltransferase

Probab=99.69  E-value=4.4e-16  Score=165.53  Aligned_cols=226  Identities=16%  Similarity=0.136  Sum_probs=134.2

Q ss_pred             HhhhhhhHHHHHHHhccccccchhhccchh---hh----hhhhhhHHHHHHHHHHHhhcccC-CCCCCCCEEEEECCCCC
Q psy17742        233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRI---VY----MRNFNNWTKSMLIDEFLTRCKSS-QPLGSPIKVLDMGSGKG  304 (597)
Q Consensus       233 ~~~~~~~~~Va~hYn~~~~~~~~~R~~S~i---~~----LR~fnnwvKs~LI~~~l~~l~~~-~~~~~~~rVLDLGCGtG  304 (597)
                      ..+......|+.|||.....+...+.....   +.    ...+.. ....++...+..+... ....++.+|||||||+|
T Consensus        52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~-aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G  130 (340)
T PLN02244         52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQ-AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG  130 (340)
T ss_pred             cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHH-HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence            334567778999998764332221111000   00    000111 1223445555443221 01135789999999999


Q ss_pred             hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHH
Q psy17742        305 GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQ  384 (597)
Q Consensus       305 ~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~  384 (597)
                      ..+..+++....+|+|+|+|+.|++.|+++....+......     +...|. ..++...++||+|++..++||+    .
T Consensus       131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~-----~~~~D~-~~~~~~~~~FD~V~s~~~~~h~----~  200 (340)
T PLN02244        131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVS-----FQVADA-LNQPFEDGQFDLVWSMESGEHM----P  200 (340)
T ss_pred             HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceE-----EEEcCc-ccCCCCCCCccEEEECCchhcc----C
Confidence            99999887533599999999999999999877655432221     333332 2344445689999999999998    6


Q ss_pred             HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCC
Q psy17742        385 QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLV  464 (597)
Q Consensus       385 d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv  464 (597)
                      +...++++++++|||||+|++.......+...-     ..+...      ..   .....+...|        ..|. ..
T Consensus       201 d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~-----~~l~~~------~~---~~~~~i~~~~--------~~p~-~~  257 (340)
T PLN02244        201 DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGE-----TSLKPD------EQ---KLLDKICAAY--------YLPA-WC  257 (340)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEEeccccccccc-----ccCCHH------HH---HHHHHHHhhc--------cCCC-CC
Confidence            778999999999999999999764321110000     000000      00   0000000000        0111 24


Q ss_pred             CHHHHHHHHHHcCCeEEEEEecHHHHHH
Q psy17742        465 YFPLLERIAGEFGLKRILKENFRSFYLR  492 (597)
Q Consensus       465 ~~e~L~~La~eaGfelV~~~~F~ef~~e  492 (597)
                      +.+.+.++++++||+.+....+..+...
T Consensus       258 s~~~~~~~l~~aGf~~v~~~d~s~~v~~  285 (340)
T PLN02244        258 STSDYVKLAESLGLQDIKTEDWSEHVAP  285 (340)
T ss_pred             CHHHHHHHHHHCCCCeeEeeeCcHHHHH
Confidence            7889999999999999999887766443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.68  E-value=2.2e-15  Score=154.53  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=107.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhh--hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKR--KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~--~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+|+.|++.|+++......  ....     .+...+ ...++.++++|
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i-----~~~~~d-~~~lp~~~~sf  146 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNI-----EWIEGD-ATDLPFDDCYF  146 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCe-----EEEEcc-cccCCCCCCCE
Confidence            5689999999999998887764 3 25899999999999999987542111  1111     123333 23455555689


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH--HHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ--IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~--i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      |+|++.+++|++    +++..+|++++++|||||+|++.......  ....+...   .+..             ..+++
T Consensus       147 D~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~---~~~~-------------~~~~~  206 (261)
T PLN02233        147 DAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEW---MIDN-------------VVVPV  206 (261)
T ss_pred             eEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHH---HHhh-------------hhhHH
Confidence            999999999998    67889999999999999999887655421  11111100   0000             00001


Q ss_pred             cc------ceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        446 GA------KYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       446 G~------~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      +.      .|.+ +...+   +.+++.+++.++++++||+.+....+
T Consensus       207 ~~~~~~~~~y~~-l~~s~---~~f~s~~el~~ll~~aGF~~~~~~~~  249 (261)
T PLN02233        207 ATGYGLAKEYEY-LKSSI---NEYLTGEELEKLALEAGFSSAKHYEI  249 (261)
T ss_pred             HHHhCChHHHHH-HHHHH---HhcCCHHHHHHHHHHCCCCEEEEEEc
Confidence            11      1111 11111   22678999999999999999876653

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.66  E-value=1.3e-15  Score=141.87  Aligned_cols=138  Identities=22%  Similarity=0.306  Sum_probs=99.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||.|.++..+...+. +|+|+|+++.+++.        ....      ...+...   ......++||+|+
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~------~~~~~~~---~~~~~~~~fD~i~   83 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVV------FDNFDAQ---DPPFPDGSFDLII   83 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSE------EEEEECH---THHCHSSSEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhh------hhhhhhh---hhhccccchhhHh
Confidence            578999999999999999988886 99999999999988        0000      0122211   1112335799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH-HHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ-IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~-i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      |..+|||+    +++..+|+++.++|||||++++++++... ....+...   .+         ..      +..++   
T Consensus        84 ~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~---~~---------~~------~~~~~---  138 (161)
T PF13489_consen   84 CNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW---RY---------DR------PYGGH---  138 (161)
T ss_dssp             EESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC---CG---------TC------HHTTT---
T ss_pred             hHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc---CC---------cC------ccCce---
Confidence            99999999    78999999999999999999999998642 22211110   00         00      00011   


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEE
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRIL  482 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~  482 (597)
                                ..+++.+.|.++++++||++|+
T Consensus       139 ----------~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen  139 ----------VHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             ----------TEEBBHHHHHHHHHHTTEEEEE
T ss_pred             ----------eccCCHHHHHHHHHHCCCEEEE
Confidence                      1246889999999999999986

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.64  E-value=1.8e-15  Score=133.51  Aligned_cols=110  Identities=25%  Similarity=0.270  Sum_probs=83.3

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      |+.+|||||||+|..+..+++ ....+|+|+|+|+.|++.|+++........+..     ++..++ ........+||+|
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-----~~~~d~-~~~~~~~~~~D~v   74 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRIT-----FVQGDA-EFDPDFLEPFDLV   74 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEE-----EEESCC-HGGTTTSSCEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeE-----EEECcc-ccCcccCCCCCEE
Confidence            468999999999999999988 234689999999999999999985544433331     444444 1112223469999


Q ss_pred             EEcc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++.+ ++++++.. ++...+|+.+.+.|+|||+|+++.+
T Consensus        75 ~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   75 ICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             EECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9999 66655333 7889999999999999999999763

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.63  E-value=3.1e-14  Score=144.31  Aligned_cols=105  Identities=16%  Similarity=0.283  Sum_probs=84.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|..+..+...+ .+|+|+|+|+.|++.|+++....           .+...+. +.++...++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~-----------~~~~~d~-~~~~~~~~~fD~V~  108 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAAD-----------HYLAGDI-ESLPLATATFDLAW  108 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCC-----------CEEEcCc-ccCcCCCCcEEEEE
Confidence            45789999999999998888776 59999999999999998874321           0333332 23344446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      +..++|++    .++..+|.++.++|||||.|+++++....+
T Consensus       109 s~~~l~~~----~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~  146 (251)
T PRK10258        109 SNLAVQWC----GNLSTALRELYRVVRPGGVVAFTTLVQGSL  146 (251)
T ss_pred             ECchhhhc----CCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence            99999998    778899999999999999999998776443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.61  E-value=2.4e-15  Score=127.37  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=76.4

Q ss_pred             EEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccch
Q psy17742        297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCI  376 (597)
Q Consensus       297 LDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vL  376 (597)
                      ||+|||+|..+..+++.+..+|+|+|+++.+++.++++.......         +...+ ...++.++++||+|++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~---------~~~~d-~~~l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVS---------FRQGD-AEDLPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEE---------EEESB-TTSSSS-TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCch---------heeeh-HHhCccccccccccccccce
Confidence            899999999999999885579999999999999999987654332         22222 33456666789999999999


Q ss_pred             hhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        377 HYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       377 h~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      ||+    +++..+++++.|+|||||++++
T Consensus        71 ~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            998    8999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.60  E-value=2.9e-14  Score=142.29  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=82.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++........ .     .++..+.. .++...++||+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v-----~~~~~d~~-~~~~~~~~fD~  117 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-V-----ELVHGNAM-ELPFDDNSFDY  117 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-e-----EEEEechh-cCCCCCCCccE
Confidence            5689999999999999988764 2 3589999999999999999876544321 1     13333322 23333467999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++.+++|++    ++...+|+++.++|+|||++++..+.
T Consensus       118 V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~  153 (231)
T TIGR02752       118 VTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVCLETS  153 (231)
T ss_pred             EEEecccccC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence            9999999987    67789999999999999999886543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.60  E-value=4.8e-14  Score=144.86  Aligned_cols=156  Identities=17%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....   ...     .+...+.. ..+.+.++||+|+
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i-----~~~~~D~~-~~~~~~~~FD~V~  122 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKI-----EFEANDIL-KKDFPENTFDMIY  122 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---Cce-----EEEECCcc-cCCCCCCCeEEEE
Confidence            67899999999999998887643359999999999999999886541   111     02233322 2233346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH---HHHHhhhccCccCCceEEEEecCCCCCCCCCcccc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI---MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK  448 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i---~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~  448 (597)
                      +..+++|+  +..+...+|++++++|||||+|+++.+.....   ...+..                             
T Consensus       123 s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~-----------------------------  171 (263)
T PTZ00098        123 SRDAILHL--SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKA-----------------------------  171 (263)
T ss_pred             EhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHH-----------------------------
Confidence            99988886  33478899999999999999999976532110   000000                             


Q ss_pred             eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742        449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK  493 (597)
Q Consensus       449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~  493 (597)
                      |   +...   .-.+.+...+.++++++||+.+......+++...
T Consensus       172 ~---~~~~---~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~  210 (263)
T PTZ00098        172 Y---IKKR---KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLEL  210 (263)
T ss_pred             H---HHhc---CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence            0   0000   0014688899999999999999988766665443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.56  E-value=5.5e-14  Score=148.54  Aligned_cols=156  Identities=21%  Similarity=0.195  Sum_probs=103.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||||||+|.++..++..+...|+|+|+|+.|+..++......+.....     .+...++ +.++. .++||+|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i-----~~~~~d~-e~lp~-~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRA-----HLLPLGI-EQLPA-LKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCe-----EEEeCCH-HHCCC-cCCcCEEE
Confidence            46899999999999999999888778999999999997655432221111111     1222222 33444 46799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..++||.    .++..+|++++++|+|||.|++.+...+.-            +...   .+..          ..|. 
T Consensus       195 s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~------------~~~~---l~p~----------~~y~-  244 (322)
T PRK15068        195 SMGVLYHR----RSPLDHLKQLKDQLVPGGELVLETLVIDGD------------ENTV---LVPG----------DRYA-  244 (322)
T ss_pred             ECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEEEEecCC------------Cccc---cCch----------hHHh-
Confidence            99999997    678899999999999999999975321100            0000   0000          0010 


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS  488 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e  488 (597)
                          .+...-++.+...+..+++++||+.++......
T Consensus       245 ----~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~  277 (322)
T PRK15068        245 ----KMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV  277 (322)
T ss_pred             ----cCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence                000001245788999999999999998775443

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.56  E-value=5.1e-14  Score=145.60  Aligned_cols=177  Identities=22%  Similarity=0.246  Sum_probs=113.0

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA  354 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~  354 (597)
                      .+..++.++.    .+++.+|||||||.|+.+..+++. | .+|+|+.+|++.++.|+++....+......     +...
T Consensus        50 k~~~~~~~~~----l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~-----v~~~  119 (273)
T PF02353_consen   50 KLDLLCEKLG----LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGLEDRVE-----VRLQ  119 (273)
T ss_dssp             HHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEE-----EEES
T ss_pred             HHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCCCCceE-----EEEe
Confidence            3444444432    347899999999999999999887 6 499999999999999999998887654431     3333


Q ss_pred             hhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEe
Q psy17742        355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQC  434 (597)
Q Consensus       355 dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F  434 (597)
                      |.. .++   .+||.|++..++.|+  ...+...+++.+.++|||||.+++.+.....-..........           
T Consensus       120 D~~-~~~---~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~-----------  182 (273)
T PF02353_consen  120 DYR-DLP---GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSS-----------  182 (273)
T ss_dssp             -GG-G------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCC-----------
T ss_pred             ecc-ccC---CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCc-----------
Confidence            322 232   379999999999887  446788999999999999999987655443222111100000           


Q ss_pred             cCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Q psy17742        435 LFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIK  495 (597)
Q Consensus       435 ~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~  495 (597)
                               .|=.+|.|-       --++.+...+...+++.||+++.+.++...|..-..
T Consensus       183 ---------~~i~kyiFP-------gg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~  227 (273)
T PF02353_consen  183 ---------DFIRKYIFP-------GGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLR  227 (273)
T ss_dssp             ---------HHHHHHTST-------TS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHH
T ss_pred             ---------eEEEEeeCC-------CCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHH
Confidence                     011111110       013456788888999999999999999998876654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00452 methyltransferase, putative

Probab=99.56  E-value=8.6e-14  Score=146.49  Aligned_cols=172  Identities=17%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc
Q psy17742        270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR  349 (597)
Q Consensus       270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~  349 (597)
                      .|-.......++..+..    .++.+|||||||+|.++..++..|...|+|+|+|+.|+.+++............     
T Consensus       103 e~~s~~~~~~~l~~l~~----~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v-----  173 (314)
T TIGR00452       103 EWRSDIKWDRVLPHLSP----LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA-----  173 (314)
T ss_pred             HHHHHHHHHHHHHhcCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe-----
Confidence            45444444555554322    256899999999999999888888778999999999998764322211111111     


Q ss_pred             ceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCce
Q psy17742        350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDV  429 (597)
Q Consensus       350 d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~v  429 (597)
                      .+...++ +.++.. .+||+|+|..+++|.    .++..+|++++++|||||.|++.+...+.-            .+..
T Consensus       174 ~~~~~~i-e~lp~~-~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvletl~i~g~------------~~~~  235 (314)
T TIGR00452       174 ILEPLGI-EQLHEL-YAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLETLVIDGD------------LNTV  235 (314)
T ss_pred             EEEECCH-HHCCCC-CCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEEEEecCc------------cccc
Confidence            0222222 233332 369999999999998    778899999999999999999976422100            0000


Q ss_pred             EEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        430 YQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       430 y~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      .   ...          ..|.     .+.-.-++.+...+..+++++||+.++....
T Consensus       236 l---~p~----------~ry~-----k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       236 L---VPK----------DRYA-----KMKNVYFIPSVSALKNWLEKVGFENFRILDV  274 (314)
T ss_pred             c---Cch----------HHHH-----hccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence            0   000          0000     0000012457889999999999999987643

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.55  E-value=1e-13  Score=137.74  Aligned_cols=150  Identities=19%  Similarity=0.141  Sum_probs=109.2

Q ss_pred             EEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        295 KVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      +|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++....+...+..     ++..+.... +. .++||+|++.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~-----~~~~d~~~~-~~-~~~fD~I~~~   74 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIR-----IFYRDSAKD-PF-PDTYDLVFGF   74 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceE-----EEecccccC-CC-CCCCCEeehH
Confidence            69999999999999887653 3589999999999999999887655433221     333333222 22 2479999999


Q ss_pred             cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeec
Q psy17742        374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNL  453 (597)
Q Consensus       374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L  453 (597)
                      .++||+    .++..+|++++++|||||+|++..+..+.            +..      ...       .         
T Consensus        75 ~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------------~~~------~~~-------~---------  116 (224)
T smart00828       75 EVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANL------------LSA------IEH-------E---------  116 (224)
T ss_pred             HHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEccccc------------Ccc------ccc-------c---------
Confidence            999998    66789999999999999999997653211            000      000       0         


Q ss_pred             cccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742        454 EGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK  493 (597)
Q Consensus       454 ~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~  493 (597)
                          ....|+.+...+.++++++||+++...++..-|...
T Consensus       117 ----~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  152 (224)
T smart00828      117 ----ETTSYLVTREEWAELLARNNLRVVEGVDASLEIANF  152 (224)
T ss_pred             ----ccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhh
Confidence                011245778899999999999999998887766544

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=1.1e-13  Score=141.02  Aligned_cols=99  Identities=16%  Similarity=0.261  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++    ..         .+...+.. .+. ..++||+|
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~---------~~~~~d~~-~~~-~~~~fD~v   93 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV---------DARTGDVR-DWK-PKPDTDVV   93 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC---------cEEEcChh-hCC-CCCCceEE
Confidence            56899999999999999888762 35899999999999999763    11         13344433 232 23579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +|+.++||+    .++..++++++++|||||+|++.++.
T Consensus        94 ~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         94 VSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             EEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            999999998    67789999999999999999998764

>KOG1270|consensus

Probab=99.54  E-value=2.3e-14  Score=144.60  Aligned_cols=160  Identities=18%  Similarity=0.073  Sum_probs=111.7

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.+|||+|||+|.++..+++.| ++|+|||+++.||+.|+++............ .+..|.....+.   ..++||+|+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~-y~l~~~~~~~E~---~~~~fDaVvc  164 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIA-YRLEYEDTDVEG---LTGKFDAVVC  164 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccc-eeeehhhcchhh---cccccceeee
Confidence            4789999999999999999999 5999999999999999998433332221100 001122212222   2356999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeee
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFN  452 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~  452 (597)
                      ..+++|+    .++..+++.+.++|||||.+++++.+...+.....    ..+...+.+|-         |.-++     
T Consensus       165 sevleHV----~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~----i~~~E~vl~iv---------p~Gth-----  222 (282)
T KOG1270|consen  165 SEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGT----IFLAEIVLRIV---------PKGTH-----  222 (282)
T ss_pred             HHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcc----ccHHHHHHHhc---------CCCCc-----
Confidence            9999998    99999999999999999999999998865543211    00111111111         11111     


Q ss_pred             ccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        453 LEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       453 L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                            ..|-++.+.++..++...|+.+..+..
T Consensus       223 ------~~ekfi~p~e~~~~l~~~~~~v~~v~G  249 (282)
T KOG1270|consen  223 ------TWEKFINPEELTSILNANGAQVNDVVG  249 (282)
T ss_pred             ------CHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence                  234568899999999999998886654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.54  E-value=7.6e-14  Score=130.97  Aligned_cols=106  Identities=25%  Similarity=0.361  Sum_probs=86.4

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sF  367 (597)
                      ++.+|||||||+|.++..++. .+ ..+++|+|+|+.||+.|++++...+.....      +...++.+ ++  .. ++|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~------~~~~d~~~-l~~~~~-~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIE------FIQGDIED-LPQELE-EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEE------EEESBTTC-GCGCSS-TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccc------eEEeehhc-cccccC-CCe
Confidence            568999999999999999984 32 468999999999999999988877665221      44455444 44  22 579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++..++|++    .+...+|+++.++|++||.+++..+.
T Consensus        75 D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999999999998    78889999999999999999999888

...

>TIGR00740 methyltransferase, putative

Probab=99.52  E-value=5.2e-13  Score=134.62  Aligned_cols=107  Identities=18%  Similarity=0.310  Sum_probs=81.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING---GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|..+..+++.   ...+|+|+|+|+.|++.|+++........+..     +...++. .++.+  .+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~~--~~d  124 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVE-----ILCNDIR-HVEIK--NAS  124 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeE-----EEECChh-hCCCC--CCC
Confidence            5679999999999999888763   23589999999999999999876543222111     3333322 33332  489


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|++.+++||+  +..+...+|++++++|||||.|+++.+
T Consensus       125 ~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       125 MVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             EEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            99999999997  445788999999999999999999854

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG1540|consensus

Probab=99.51  E-value=1.6e-13  Score=137.97  Aligned_cols=200  Identities=19%  Similarity=0.267  Sum_probs=132.1

Q ss_pred             hhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-C
Q psy17742        236 AGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-G  314 (597)
Q Consensus       236 ~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g  314 (597)
                      ...++.|+..||-....          ..+-..+-| |..++..+-        +..+.+|||+|||+|..+..+++. +
T Consensus        63 ~~vF~~vA~~YD~mND~----------mSlGiHRlW-Kd~~v~~L~--------p~~~m~~lDvaGGTGDiaFril~~v~  123 (296)
T KOG1540|consen   63 HHVFESVAKKYDIMNDA----------MSLGIHRLW-KDMFVSKLG--------PGKGMKVLDVAGGTGDIAFRILRHVK  123 (296)
T ss_pred             HHHHHHHHHHHHHHHHH----------hhcchhHHH-HHHhhhccC--------CCCCCeEEEecCCcchhHHHHHHhhc
Confidence            56788888888764211          111111245 555544432        236799999999999999887653 2


Q ss_pred             ------CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHH
Q psy17742        315 ------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARC  388 (597)
Q Consensus       315 ------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~  388 (597)
                            ..+|+++||++.||..+++|..+.+.....    ...+.....+.+|+++.+||...+.|.|.+.    .++.+
T Consensus       124 s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~----~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~----th~~k  195 (296)
T KOG1540|consen  124 SQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASS----RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV----THIQK  195 (296)
T ss_pred             cccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCC----ceEEEeCCcccCCCCCCcceeEEEecceecC----CCHHH
Confidence                  268999999999999999998765443321    0134433456677777889999999999887    78899


Q ss_pred             HHHHHHHhccCCcEEEEEeCCh-h-HHHHHHhhhccCccCCceEEEEecCCCCCCCCCcc-------cceeeeccccccc
Q psy17742        389 MLKNAAECLKPGGFFVGTVPDS-N-QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFG-------AKYDFNLEGVVNC  459 (597)
Q Consensus       389 ~L~~i~rlLKPGG~fIit~pn~-~-~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG-------~~Y~F~L~d~Vn~  459 (597)
                      .|++++|+|||||+|.+-..+. + ..+..+.....  |              +..|..|       ..|.| |.++|+ 
T Consensus       196 ~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys--f--------------~VlpvlG~~iagd~~sYqY-LveSI~-  257 (296)
T KOG1540|consen  196 ALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS--F--------------DVLPVLGEIIAGDRKSYQY-LVESIR-  257 (296)
T ss_pred             HHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhh--h--------------hhhchhhHhhhhhHhhhhh-HHhhhh-
Confidence            9999999999999998766554 2 23333322110  0              0112222       12322 223332 


Q ss_pred             cccCCCHHHHHHHHHHcCCeEEE
Q psy17742        460 PEFLVYFPLLERIAGEFGLKRIL  482 (597)
Q Consensus       460 pEYlv~~e~L~~La~eaGfelV~  482 (597)
                        .+-+-++|..+.+++||..+.
T Consensus       258 --rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  258 --RFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             --cCCCHHHHHHHHHHcCCcccc
Confidence              245678999999999999986

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.50  E-value=5.2e-13  Score=131.25  Aligned_cols=104  Identities=23%  Similarity=0.254  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|..+..++....  .+++|+|+++.+++.++++.. ..  ...     .+...+..+ ++...++||+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~--~~i-----~~~~~d~~~-~~~~~~~~D~  109 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LP--LNI-----EFIQADAEA-LPFEDNSFDA  109 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cC--CCc-----eEEecchhc-CCCCCCcEEE
Confidence            568999999999999999887764  489999999999999998865 11  111     133333222 2233457999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++.+++|+.    .++..+|+++.++|+|||+|++...
T Consensus       110 i~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       110 VTIAFGLRNV----TDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             EEEeeeeCCc----ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999999887    6788999999999999999987653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.49  E-value=1e-12  Score=130.73  Aligned_cols=152  Identities=19%  Similarity=0.154  Sum_probs=102.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++++.........     .+...++. .++   ++||+|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i-----~~~~~d~~-~~~---~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNV-----EFEVNDLL-SLC---GEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCce-----EEEECChh-hCC---CCcCEEE
Confidence            57899999999999999998876 49999999999999999988654432111     13333322 222   5699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH-HHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ-IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~-i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +..+++|.  +..++..+++++.+++++|+++.+....... ....+..    .++         ..             
T Consensus       125 ~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~---------~~-------------  176 (219)
T TIGR02021       125 CMDVLIHY--PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGE----LFP---------GS-------------  176 (219)
T ss_pred             EhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHh----hCc---------Cc-------------
Confidence            99998875  3456888999999999877666553222111 1111111    010         00             


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                           ....+-+.++.+.+.++++++||+++....+
T Consensus       177 -----~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~  207 (219)
T TIGR02021       177 -----SRATSAYLHPMTDLERALGELGWKIVREGLV  207 (219)
T ss_pred             -----ccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence                 0001123568899999999999999987643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.49  E-value=5.4e-13  Score=147.46  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.......  .     .+...++.. .+.+.++||+|+
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~--v-----~~~~~d~~~-~~~~~~~fD~I~  337 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCS--V-----EFEVADCTK-KTYPDNSFDVIY  337 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCc--e-----EEEEcCccc-CCCCCCCEEEEE
Confidence            56899999999999988887653358999999999999999876432211  1     133344322 222335799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..+++|+    .++..+|++++++|||||.|+++.+.......           .               +.+. .+  
T Consensus       338 s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----------~---------------~~~~-~~--  384 (475)
T PLN02336        338 SRDTILHI----QDKPALFRSFFKWLKPGGKVLISDYCRSPGTP-----------S---------------PEFA-EY--  384 (475)
T ss_pred             ECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC-----------c---------------HHHH-HH--
Confidence            99999998    67889999999999999999998653210000           0               0000 00  


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKI  494 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~  494 (597)
                       +..   .--.+.+...+.++++++||+++....+.+-|....
T Consensus       385 -~~~---~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~~  423 (475)
T PLN02336        385 -IKQ---RGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQVL  423 (475)
T ss_pred             -HHh---cCCCCCCHHHHHHHHHHCCCeeeeeecchHHHHHHH
Confidence             000   001245778899999999999998877666554443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=6e-15  Score=128.20  Aligned_cols=97  Identities=23%  Similarity=0.351  Sum_probs=62.2

Q ss_pred             EEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEEEEcc
Q psy17742        297 LDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLVSCQF  374 (597)
Q Consensus       297 LDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvVi~~~  374 (597)
                      ||||||+|.++..++.. ...+|+|+|+|+.|++.|++++.........      .+.....+.+.. ..++||+|++.+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFE------RLRFDVLDLFDYDPPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EE------EEE--SSS---CCC----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCccee------EEEeecCChhhcccccccceehhhh
Confidence            89999999999998776 3359999999999999999888776543211      222211111111 114799999999


Q ss_pred             chhhhccCHHHHHHHHHHHHHhccCCcEE
Q psy17742        375 CIHYSFESVQQARCMLKNAAECLKPGGFF  403 (597)
Q Consensus       375 vLh~lFes~~d~~~~L~~i~rlLKPGG~f  403 (597)
                      ++||+    +++..+|++++++|||||+|
T Consensus        75 vl~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   75 VLHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             hHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            99998    88889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=2.9e-13  Score=133.14  Aligned_cols=103  Identities=21%  Similarity=0.312  Sum_probs=80.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++....+.....      ....++. .++. .++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~------~~~~d~~-~~~~-~~~fD~I~  100 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLH------TAVVDLN-NLTF-DGEYDFIL  100 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcce------EEecChh-hCCc-CCCcCEEE
Confidence            457899999999999999998874 9999999999999999887665432111      2223322 2222 24699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      |.+++||+  +..+...+++++.++|||||++++
T Consensus       101 ~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        101 STVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             EecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99999886  456789999999999999999655

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=3.9e-13  Score=136.66  Aligned_cols=106  Identities=19%  Similarity=0.344  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING---GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|..+..++..   ...+|+|+|+|+.|++.|++++...+......     +...+.. .++..  .+|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~-----~~~~d~~-~~~~~--~~D  127 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVD-----VIEGDIR-DIAIE--NAS  127 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeE-----EEeCChh-hCCCC--CCC
Confidence            5689999999999998877652   33599999999999999999987654332221     3333322 33332  499


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|++.+++|++  +..+...++++++++|||||.|+++.
T Consensus       128 ~vv~~~~l~~l--~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        128 MVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             EEehhhHHHhC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999997  34567899999999999999999875

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=7.1e-13  Score=136.69  Aligned_cols=165  Identities=20%  Similarity=0.182  Sum_probs=120.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++|.+|||||||.|..+..+++....+|+|+++|+++.+.+++++...+...+..     +...    .+.+-.++||-
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~-----v~l~----d~rd~~e~fDr  140 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVE-----VRLQ----DYRDFEEPFDR  140 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccE-----EEec----cccccccccce
Confidence            34899999999999999999988754599999999999999999999887763321     2222    23333356999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY  449 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y  449 (597)
                      |++..+++|+  ..+....+|+.++++|+|||.+++-+.....-..          .              ..+.|=.+|
T Consensus       141 IvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~----------~--------------~~~~~i~~y  194 (283)
T COG2230         141 IVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEF----------R--------------RFPDFIDKY  194 (283)
T ss_pred             eeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEEecCCCccc----------c--------------cchHHHHHh
Confidence            9999999998  5567999999999999999999876543311000          0              011122222


Q ss_pred             eeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Q psy17742        450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKE  496 (597)
Q Consensus       450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~  496 (597)
                      .|-       --++-+...+.+.+.++||.+.....|...|..-...
T Consensus       195 iFP-------gG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~  234 (283)
T COG2230         195 IFP-------GGELPSISEILELASEAGFVVLDVESLRPHYARTLRL  234 (283)
T ss_pred             CCC-------CCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence            211       0134567888899999999999999999888766554

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.47  E-value=1.8e-12  Score=128.83  Aligned_cols=106  Identities=19%  Similarity=0.204  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|..+..++..+  ..+|+|+|+++.+++.++++....+.....     .+...+.. .++...++||+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-----~~~~~d~~-~~~~~~~~~D~  124 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV-----EFVQGDAE-ALPFPDNSFDA  124 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCe-----EEEecccc-cCCCCCCCccE
Confidence            46899999999999999888765  369999999999999999987653222111     12333322 22233457999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |++.+++|+.    .+...+|+++.++|+|||.+++..
T Consensus       125 I~~~~~l~~~----~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        125 VTIAFGLRNV----PDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             EEEecccccC----CCHHHHHHHHHHhccCCcEEEEEE
Confidence            9999999887    678899999999999999998754

>PRK05785 hypothetical protein; Provisional

Probab=99.45  E-value=1.4e-12  Score=131.22  Aligned_cols=91  Identities=19%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++..              ....+ .+.++..+++||+|+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~--------------~~~~d-~~~lp~~d~sfD~v~  115 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADD--------------KVVGS-FEALPFRDKSFDVVM  115 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccc--------------eEEec-hhhCCCCCCCEEEEE
Confidence            357999999999999998887632489999999999999986421              22222 233555567899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGG  401 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG  401 (597)
                      +.+++||+    .++..+|++++|+|||++
T Consensus       116 ~~~~l~~~----~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        116 SSFALHAS----DNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ecChhhcc----CCHHHHHHHHHHHhcCce
Confidence            99999997    788899999999999953

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.45  E-value=2.6e-12  Score=128.63  Aligned_cols=157  Identities=17%  Similarity=0.093  Sum_probs=104.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..+.+.+ .+++|+|+++.+++.|+++........       .+...+.........++||+|+
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~fD~Ii  119 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKI-------DYRQTTAEELAAEHPGQFDVVT  119 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCce-------EEEecCHHHhhhhcCCCccEEE
Confidence            57899999999999998888776 489999999999999998876543311       1223332222112235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..+++++    .+...+|+++.++|+|||.++++.++.............    ..+..  +       .+..+.    
T Consensus       120 ~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~----~~~~~--~-------~~~~~~----  178 (233)
T PRK05134        120 CMEMLEHV----PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGA----EYVLR--M-------LPKGTH----  178 (233)
T ss_pred             EhhHhhcc----CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhH----HHHhh--h-------cCcccC----
Confidence            99999887    677889999999999999999988765322111000000    00000  0       000000    


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                             ....+++.+++.++++++||+++...
T Consensus       179 -------~~~~~~~~~~~~~~l~~~Gf~~v~~~  204 (233)
T PRK05134        179 -------DYKKFIKPSELAAWLRQAGLEVQDIT  204 (233)
T ss_pred             -------chhhcCCHHHHHHHHHHCCCeEeeee
Confidence                   00124678889999999999999775

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.44  E-value=8.3e-13  Score=129.75  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=79.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....+....       ....++. .++.. ++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~-------~~~~d~~-~~~~~-~~fD~I~   99 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLR-------TDAYDIN-AAALN-EDYDFIF   99 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCce-------eEeccch-hcccc-CCCCEEE
Confidence            357899999999999999998874 999999999999999988765443211       2222221 12222 4699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +..++|++  +.++...++++++++|||||++++.
T Consensus       100 ~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       100 STVVFMFL--QAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             EecccccC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            99999886  4467889999999999999996653

Part of a tellurite-reducing operon tehA and tehB

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.43  E-value=9.6e-12  Score=123.68  Aligned_cols=154  Identities=18%  Similarity=0.164  Sum_probs=100.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. .|+|+|+|+.|++.|++++...+.....     .+...+    ++...++||+|+
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i-----~~~~~d----~~~~~~~fD~v~  132 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNI-----TFEVGD----LESLLGRFDTVV  132 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCc-----EEEEcC----chhccCCcCEEE
Confidence            467999999999999999988775 7999999999999999987665432111     133333    222235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||.  +.++...+++++.+.+++|+. +. ..............     + .    .|...        .     
T Consensus       133 ~~~~l~~~--~~~~~~~~l~~l~~~~~~~~~-i~-~~~~~~~~~~~~~l-----~-~----~~~~~--------~-----  185 (230)
T PRK07580        133 CLDVLIHY--PQEDAARMLAHLASLTRGSLI-FT-FAPYTPLLALLHWI-----G-G----LFPGP--------S-----  185 (230)
T ss_pred             EcchhhcC--CHHHHHHHHHHHHhhcCCeEE-EE-ECCccHHHHHHHHh-----c-c----ccCCc--------c-----
Confidence            99999875  345778899999987754443 33 32222222111110     0 0    00000        0     


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                           ...+-+.++...+.++++.+||++++...+.
T Consensus       186 -----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  216 (230)
T PRK07580        186 -----RTTRIYPHREKGIRRALAAAGFKVVRTERIS  216 (230)
T ss_pred             -----CCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence                 0011234678899999999999999987654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.43  E-value=3.1e-13  Score=118.20  Aligned_cols=96  Identities=28%  Similarity=0.377  Sum_probs=72.7

Q ss_pred             EEEECCCCChhHHHHHhcC---C-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        296 VLDMGSGKGGDMLKWINGG---V-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       296 VLDLGCGtG~~l~~la~~g---~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      |||+|||+|..+..+....   . .+++|+|+|+.||+.++++....+...       .++..|.. .++...++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~-------~~~~~D~~-~l~~~~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKV-------RFVQADAR-DLPFSDGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTS-------EEEESCTT-CHHHHSSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCce-------EEEECCHh-HCcccCCCeeEEE
Confidence            7999999999999987653   2 699999999999999999987644321       14555533 2444456899999


Q ss_pred             Eccc-hhhhccCHHHHHHHHHHHHHhccCCc
Q psy17742        372 CQFC-IHYSFESVQQARCMLKNAAECLKPGG  401 (597)
Q Consensus       372 ~~~v-Lh~lFes~~d~~~~L~~i~rlLKPGG  401 (597)
                      |.+. +||+  +.++...+|+++.++|||||
T Consensus        73 ~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHHL--SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence            9655 9996  67789999999999999998

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.43  E-value=4.7e-12  Score=125.58  Aligned_cols=161  Identities=17%  Similarity=0.162  Sum_probs=106.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||+|||+|.++..++..+. .++|+|+++.+++.++++........ .     .+...+..+......++||+|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~-~-----~~~~~d~~~~~~~~~~~~D~i~  117 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK-I-----EYRCTSVEDLAEKGAKSFDVVT  117 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-e-----EEEeCCHHHhhcCCCCCccEEE
Confidence            468999999999999998887764 79999999999999998876543311 1     0222222222112135799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++|++    .++..+|+++.++|+|||.+++..++............    ...+....         +..+..+  
T Consensus       118 ~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~~~--  178 (224)
T TIGR01983       118 CMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG----AEYILRIV---------PKGTHDW--  178 (224)
T ss_pred             ehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh----hhhhhhcC---------CCCcCCh--
Confidence            99999987    67789999999999999999998876542111100000    00000000         0000000  


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                               ..+++.+.+.++++++||++++...+.
T Consensus       179 ---------~~~~~~~~l~~~l~~~G~~i~~~~~~~  205 (224)
T TIGR01983       179 ---------EKFIKPSELTSWLESAGLRVKDVKGLV  205 (224)
T ss_pred             ---------hhcCCHHHHHHHHHHcCCeeeeeeeEE
Confidence                     113577889999999999999877543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.42  E-value=2.4e-12  Score=136.80  Aligned_cols=146  Identities=17%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++......         .+...+. ..++...++||+|
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i---------~~i~gD~-e~lp~~~~sFDvV  182 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---------KIIEGDA-EDLPFPTDYADRY  182 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCC---------eEEeccH-HhCCCCCCceeEE
Confidence            5679999999999988887654 335899999999999999987542111         1333332 2334444679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY  449 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y  449 (597)
                      ++..++|+.    .+...+|++++++|||||.+++..+.. .....+.       +.         .           .+
T Consensus       183 Is~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~-------~~---------~-----------~~  231 (340)
T PLN02490        183 VSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF-------FA---------D-----------VW  231 (340)
T ss_pred             EEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH-------hh---------h-----------hh
Confidence            999999987    566789999999999999998764321 1111000       00         0           00


Q ss_pred             eeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHH
Q psy17742        450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSF  489 (597)
Q Consensus       450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef  489 (597)
                      .           .....+++.++++++||+.++...+...
T Consensus       232 ~-----------~~~t~eEl~~lL~~aGF~~V~i~~i~~~  260 (340)
T PLN02490        232 M-----------LFPKEEEYIEWFTKAGFKDVKLKRIGPK  260 (340)
T ss_pred             c-----------cCCCHHHHHHHHHHCCCeEEEEEEcChh
Confidence            0           0235788999999999999998876543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.42  E-value=6.6e-12  Score=135.75  Aligned_cols=157  Identities=20%  Similarity=0.157  Sum_probs=109.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..+++....+|+|+|+|+.+++.|+++.......         +...+.. .+   .++||+|+
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~---------~~~~D~~-~l---~~~fD~Iv  233 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVE---------IRLQDYR-DL---NGQFDRIV  233 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEE---------EEECchh-hc---CCCCCEEE
Confidence            67899999999999999888753359999999999999999987432110         2222221 12   25799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..+++|+  ...++..+++.+.++|||||++++..+......     .                    ....|-.+|.|
T Consensus       234 s~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~-----~--------------------~~~~~i~~yif  286 (383)
T PRK11705        234 SVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD-----T--------------------NVDPWINKYIF  286 (383)
T ss_pred             EeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-----C--------------------CCCCCceeeec
Confidence            99999886  345678999999999999999999865432100     0                    00111122222


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKE  496 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~  496 (597)
                      -       --++.+...+.++++ .||++.....|...|......
T Consensus       287 p-------~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~  323 (383)
T PRK11705        287 P-------NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMA  323 (383)
T ss_pred             C-------CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHH
Confidence            1       012456677777655 699999999999999766654

>PRK06202 hypothetical protein; Provisional

Probab=99.41  E-value=1.8e-12  Score=130.06  Aligned_cols=158  Identities=11%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ++.+|||||||+|.++..++.    .| ..+|+|+|+|+.|++.|+++....+....       ....   ..++...++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-------~~~~---~~l~~~~~~  129 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFR-------QAVS---DELVAEGER  129 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEE-------EEec---ccccccCCC
Confidence            567999999999998877653    23 24899999999999999887543322110       1111   122223467


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH-hhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY-RRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l-~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      ||+|+|++++||+  ..++...+|+++.++++  |.+++...........+ .......+.+.+..    .         
T Consensus       130 fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~----~---------  192 (232)
T PRK06202        130 FDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVH----T---------  192 (232)
T ss_pred             ccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceee----c---------
Confidence            9999999999997  33456789999999998  44444444432221111 11000001011110    0         


Q ss_pred             ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                               +....-...++.+++.+++++ ||++.....|
T Consensus       193 ---------d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~  223 (232)
T PRK06202        193 ---------DGLLSVRRSYTPAELAALAPQ-GWRVERQWPF  223 (232)
T ss_pred             ---------cchHHHHhhcCHHHHHHHhhC-CCeEEeccce
Confidence                     001111235788999999999 9999887665

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.41  E-value=1.5e-12  Score=133.59  Aligned_cols=106  Identities=22%  Similarity=0.264  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|.++..++.. +. .+|+|+|+++.|++.|+++....+... .     .+...++ ..++...++||+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v-----~~~~~d~-~~l~~~~~~fD~  149 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-V-----EFRLGEI-EALPVADNSVDV  149 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-E-----EEEEcch-hhCCCCCCceeE
Confidence            6789999999999987765543 32 479999999999999999876554321 1     1333332 234444467999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++..++|+.    .+...+|+++.++|||||+|++...
T Consensus       150 Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        150 IISNCVINLS----PDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             EEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999999887    5677899999999999999998643

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.41  E-value=6.4e-12  Score=122.69  Aligned_cols=157  Identities=15%  Similarity=0.185  Sum_probs=112.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV  370 (597)
                      ++.+|||||||.|.++..+........+|+|++++.+..|.++.-.             ..+.|+.+.+. .++++||.|
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~-------------Viq~Dld~gL~~f~d~sFD~V   79 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVS-------------VIQGDLDEGLADFPDQSFDYV   79 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCC-------------EEECCHHHhHhhCCCCCccEE
Confidence            7899999999999999998875556899999999999988876321             45555444432 344679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +++.+|.++    ..+..+|+++.|+   |...|+++||.-.+..++.-.-.   |.      .+..  +.     ..|.
T Consensus        80 IlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~---Gr------mPvt--~~-----lPy~  136 (193)
T PF07021_consen   80 ILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLR---GR------MPVT--KA-----LPYE  136 (193)
T ss_pred             ehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhc---CC------CCCC--CC-----CCCc
Confidence            999999888    8888898888555   77999999999877776643200   00      0000  01     1133


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS  488 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e  488 (597)
                      ++  +.-|  -.+.+...|++++++.|+++++...+..
T Consensus       137 WY--dTPN--ih~~Ti~DFe~lc~~~~i~I~~~~~~~~  170 (193)
T PF07021_consen  137 WY--DTPN--IHLCTIKDFEDLCRELGIRIEERVFLDG  170 (193)
T ss_pred             cc--CCCC--cccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence            33  1111  1367899999999999999999886654

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.41  E-value=1.5e-12  Score=132.44  Aligned_cols=102  Identities=19%  Similarity=0.338  Sum_probs=80.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|++++...           .+...+.....+  ..+||+|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~~d~~~~~~--~~~fD~v   97 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDC-----------QFVEADIASWQP--PQALDLI   97 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCC-----------eEEECchhccCC--CCCccEE
Confidence            56899999999999998887653 468999999999999999875321           133333332222  2479999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +++.++||+    .+...+|+++.++|||||.|++.+++.
T Consensus        98 ~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~~  133 (258)
T PRK01683         98 FANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPDN  133 (258)
T ss_pred             EEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            999999998    677899999999999999999987653

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.40  E-value=1.2e-11  Score=130.36  Aligned_cols=155  Identities=19%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.| .+|+|+|+|+.|++.|++++......... .....+...++. .+   .++||+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~-~~~~~f~~~Dl~-~l---~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPP-EVLPKFEANDLE-SL---SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhccccccc-ccceEEEEcchh-hc---CCCcCEEE
Confidence            46799999999999999999887 48999999999999999987654211000 000012333322 22   35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..+++|+  ..+....+++.+.+ +.+||.++...++. .....+..     ++.     .|..     .+  .     
T Consensus       218 ~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs~~p~~-~~~~~l~~-----~g~-----~~~g-----~~--~-----  271 (315)
T PLN02585        218 CLDVLIHY--PQDKADGMIAHLAS-LAEKRLIISFAPKT-LYYDILKR-----IGE-----LFPG-----PS--K-----  271 (315)
T ss_pred             EcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEEeCCcc-hHHHHHHH-----HHh-----hcCC-----CC--c-----
Confidence            99998775  22345567887775 45666655444432 11111111     111     0111     00  0     


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                            ....|+++.++++++++++||+++...
T Consensus       272 ------~~r~y~~s~eel~~lL~~AGf~v~~~~  298 (315)
T PLN02585        272 ------ATRAYLHAEADVERALKKAGWKVARRE  298 (315)
T ss_pred             ------CceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence                  011245789999999999999998654

>PRK08317 hypothetical protein; Provisional

Probab=99.40  E-value=6.4e-12  Score=124.18  Aligned_cols=106  Identities=22%  Similarity=0.209  Sum_probs=80.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..++...  ..+|+|+|+++.+++.|+++.......  .     .+...+. ..++...++||+
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~--~-----~~~~~d~-~~~~~~~~~~D~   90 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPN--V-----EFVRGDA-DGLPFPDGSFDA   90 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCc--e-----EEEeccc-ccCCCCCCCceE
Confidence            57899999999999999887653  358999999999999999873221111  1     0222222 222333467999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++..+++|+    .++..+++++.++|||||++++..++
T Consensus        91 v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         91 VRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             EEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            9999999998    67889999999999999999998764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.39  E-value=2.1e-12  Score=134.18  Aligned_cols=103  Identities=23%  Similarity=0.301  Sum_probs=80.7

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.+|||||||+|..+..++..|. +|+|+|+|+.+++.++++....+....       ....++.. ... .++||+|++
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~-------~~~~D~~~-~~~-~~~fD~I~~  190 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIR-------TGLYDINS-ASI-QEEYDFILS  190 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceE-------EEEechhc-ccc-cCCccEEEE
Confidence            45899999999999999998874 999999999999999988776544211       22223222 111 357999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ..++|++  +.++...+++++.++|+|||++++..
T Consensus       191 ~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        191 TVVLMFL--NRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             cchhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999987  45688899999999999999977643

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.38  E-value=3.1e-12  Score=125.66  Aligned_cols=104  Identities=24%  Similarity=0.334  Sum_probs=80.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.++||||||.|+.+..++..|. .|+++|+|+..++.+++.....+....       ....|+... ..+ +.||+|+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~-------~~~~Dl~~~-~~~-~~yD~I~   99 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIR-------TRVADLNDF-DFP-EEYDFIV   99 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEE-------EEE-BGCCB-S-T-TTEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeE-------EEEecchhc-ccc-CCcCEEE
Confidence            467999999999999999999997 899999999999999887766655432       334444332 222 4699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..+++|+  +.+....+++++...++|||++++.+
T Consensus       100 st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  100 STVVFMFL--QRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             EESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            99899887  56778899999999999999988844

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.37  E-value=8.8e-12  Score=111.17  Aligned_cols=104  Identities=15%  Similarity=0.073  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+.....      ++..+....++....+||+|
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~D~v   92 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIV------IVEGDAPEALEDSLPEPDRV   92 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceE------EEeccccccChhhcCCCCEE
Confidence            45799999999999999988753 368999999999999999887665432211      33332221122222479999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..+.+       ....+++.+.++|||||+|++++.
T Consensus        93 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        93 FIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             EECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            9976553       345899999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG2361|consensus

Probab=99.36  E-value=7.6e-12  Score=125.14  Aligned_cols=188  Identities=19%  Similarity=0.257  Sum_probs=122.6

Q ss_pred             hhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCC---CEEEEEeCChHHHHHH
Q psy17742        255 ELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGV---KHVVFADIASVSIEDC  331 (597)
Q Consensus       255 ~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~---~~V~GIDiS~~mIe~A  331 (597)
                      +...+.+++..|   +|    |..++-..+.....  ...+||+||||.|..+..+++...   -.|+++|.|+.+|+..
T Consensus        43 y~~~~~rFfkdR---~w----L~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~v  113 (264)
T KOG2361|consen   43 YKIHENRFFKDR---NW----LLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELV  113 (264)
T ss_pred             hhhccccccchh---HH----HHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHH
Confidence            333455555555   78    66777665544321  223899999999999988876532   3799999999999999


Q ss_pred             HHHHHhhhhhccccccccceeehhhhc---cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        332 KTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       332 ~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +++.........       .|..|+..   .-+...+++|+|++.|+|..+  +.+.+..++++++++|||||.+++.-.
T Consensus       114 k~~~~~~e~~~~-------afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  114 KKSSGYDESRVE-------AFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             Hhccccchhhhc-------ccceeccchhccCCCCcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence            886543332211       33333221   122335789999999999887  678999999999999999999999765


Q ss_pred             ChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        409 DSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       409 n~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                      ....+.. ++-..     +....-                 .|++. .-..+-|+++.+.|.+++.++||..+...
T Consensus       185 g~~Dlaq-lRF~~-----~~~i~~-----------------nfYVR-gDGT~~YfF~~eeL~~~f~~agf~~~~~~  236 (264)
T KOG2361|consen  185 GRYDLAQ-LRFKK-----GQCISE-----------------NFYVR-GDGTRAYFFTEEELDELFTKAGFEEVQLE  236 (264)
T ss_pred             ccchHHH-HhccC-----Cceeec-----------------ceEEc-cCCceeeeccHHHHHHHHHhcccchhccc
Confidence            5533221 11100     111110                 01110 00234477889999999999999888643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.35  E-value=7.8e-12  Score=123.89  Aligned_cols=107  Identities=20%  Similarity=0.325  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+|||||||+|.++..++..+ ..+++|+|+++.+++.++++...     ..     .+...++. .++...++||+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~-----~~~~~d~~-~~~~~~~~fD~v  102 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NV-----QFICGDAE-KLPLEDSSFDLI  102 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CC-----eEEecchh-hCCCCCCceeEE
Confidence            35789999999999999888765 34689999999999999887652     11     13333322 233334579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      ++.+++||+    .++..+|.++.++|+|||+|++..+....+
T Consensus       103 i~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~  141 (240)
T TIGR02072       103 VSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPGTL  141 (240)
T ss_pred             EEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence            999999998    678899999999999999999998776543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.35  E-value=1.8e-11  Score=126.93  Aligned_cols=154  Identities=18%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh-hhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA-ELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~-dl~e~l~~~~~sFDvV  370 (597)
                      .+.+|||||||.|.++..++..|.+.|+|+|.+....-+...-..-.+....       .+.. ...+.++. .+.||+|
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~-------~~~lplgvE~Lp~-~~~FDtV  186 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPP-------VFELPLGVEDLPN-LGAFDTV  186 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCcc-------EEEcCcchhhccc-cCCcCEE
Confidence            5789999999999999999999998999999999887664432221211111       1221 12344555 4689999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +|.++|-|.    .++...|++++..|+|||.+|+.+.--+              |+.-..+ ++..   ......+.  
T Consensus       187 F~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLETlvi~--------------g~~~~~L-~P~~---rYa~m~nv--  242 (315)
T PF08003_consen  187 FSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLETLVID--------------GDENTVL-VPED---RYAKMRNV--  242 (315)
T ss_pred             EEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEEeeec--------------CCCceEE-ccCC---cccCCCce--
Confidence            999999887    8889999999999999999999764321              1111111 1110   00000011  


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                                =|+-+...|...++++||+-|+.-.-.
T Consensus       243 ----------~FiPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  243 ----------WFIPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             ----------EEeCCHHHHHHHHHHcCCceEEEecCc
Confidence                      134578899999999999999876443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03438 probable methyltransferase

Probab=99.34  E-value=3e-11  Score=126.58  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=75.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC--CCCC--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY--EDKA--L  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l--~~~~--~  365 (597)
                      ++.+|||+|||+|..+..+++..  ..+|+|+|+|+.||+.|++++..........     .+..|+.+.+  +...  .
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~-----~i~gD~~~~~~~~~~~~~~  137 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVH-----GICADFTQPLALPPEPAAG  137 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEE-----EEEEcccchhhhhcccccC
Confidence            45789999999999999888764  2589999999999999999876532111111     2333332222  1110  1


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ...++++..+++++  +.++...+|++++++|+|||.|++.+.
T Consensus       138 ~~~~~~~gs~~~~~--~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       138 RRLGFFPGSTIGNF--TPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             CeEEEEecccccCC--CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            23344444567775  467888999999999999999998663

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG4300|consensus

Probab=99.34  E-value=4.4e-12  Score=124.17  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvVi  371 (597)
                      ...||++|||+|.....+-...+.+|+++|+++.|-+.|.+++.+.......      .|.....+.++ .+++++|+|+
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~------~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE------RFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE------EEEeechhcCcccccCCeeeEE
Confidence            3568999999999887766455569999999999999999998877443322      35544444454 3457899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |.++|+-.    +++.+.|+++.++|||||++++.-.-.
T Consensus       151 ~TlvLCSv----e~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  151 CTLVLCSV----EDPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             EEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            99999776    899999999999999999999875443

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.31  E-value=1.9e-11  Score=119.66  Aligned_cols=157  Identities=15%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++......++|+|+|+.+++.|+++    +..         +...++...++ ...++||+|
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~~~---------~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----GVN---------VIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----CCe---------EEEEEhhhcccccCCCCcCEE
Confidence            4679999999999999888765445789999999999988652    111         22333322221 234579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +|..++||+    .++..+|+++.+.+   |.+++++|+.........-..    +....   +..    ..     .|.
T Consensus        80 i~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~~~----~~~~~---~~~----~~-----~~~  136 (194)
T TIGR02081        80 ILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWSILT----KGRMP---VTG----EL-----PYD  136 (194)
T ss_pred             EEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHHHHh----CCccc---cCC----CC-----Ccc
Confidence            999999998    67888888887765   456777777644332221100    00000   000    00     010


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS  488 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e  488 (597)
                      +.  +.  .+..+++.+.+.++++++||++++...+..
T Consensus       137 ~~--~~--~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~~  170 (194)
T TIGR02081       137 WY--NT--PNIHFCTIADFEDLCGELNLRILDRAAFDV  170 (194)
T ss_pred             cc--CC--CCcccCcHHHHHHHHHHCCCEEEEEEEecc
Confidence            00  00  112357899999999999999999887643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.29  E-value=1.5e-11  Score=126.59  Aligned_cols=112  Identities=20%  Similarity=0.308  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCChh----HHHHHhcC------CCEEEEEeCChHHHHHHHHHHHh-hhhhcc-----c-----------
Q psy17742        292 SPIKVLDMGSGKGGD----MLKWINGG------VKHVVFADIASVSIEDCKTRYEE-LKRKEE-----A-----------  344 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~----l~~la~~g------~~~V~GIDiS~~mIe~A~er~~~-~~~~~~-----~-----------  344 (597)
                      ++.+|||+|||+|.-    +..+++.+      ..+|+|+|+|+.||+.|++..-. ......     .           
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            458999999999973    33333321      24899999999999999985311 000000     0           


Q ss_pred             -c--cccccee-ehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        345 -R--PYRRNVF-SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       345 -~--~~~~d~F-~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                       .  ......| ..++... +...++||+|+|.++|||+  +.++..+++++++++|+|||+|++.
T Consensus       179 v~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      179 VKPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence             0  0000122 2233322 2234679999999999997  4567789999999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.28  E-value=1.8e-11  Score=121.06  Aligned_cols=122  Identities=14%  Similarity=0.044  Sum_probs=85.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD  368 (597)
                      ++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|+++....+.....      +...+....++  ...++||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~------~~~~d~~~~l~~~~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLR------LLCGDAVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEE------EEecCHHHHHHHHcCccccc
Confidence            46789999999999999887653 358999999999999999987665432111      33333312222  2235799


Q ss_pred             EEEEccchhhhcc-C---HHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        369 LVSCQFCIHYSFE-S---VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       369 vVi~~~vLh~lFe-s---~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      +|++.+...+... +   ......+|+++.++|||||+|++.+++...+...+..
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~  168 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEV  168 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH
Confidence            9999876543210 0   0124679999999999999999999888766554443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.28  E-value=4e-11  Score=119.01  Aligned_cols=99  Identities=15%  Similarity=0.215  Sum_probs=76.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..+... +..+++|+|+|+.|++.|++++...           .+...++..++  ..++||+|
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~-----------~~~~~d~~~~~--~~~sfD~V  109 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNI-----------NIIQGSLFDPF--KDNFFDLV  109 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCC-----------cEEEeeccCCC--CCCCEEEE
Confidence            4578999999999999988775 3468999999999999998865321           13334433333  34679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..++||+  +.+++..+++++.+++  ++++++..
T Consensus       110 ~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       110 LTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             EECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            999999997  4567899999999998  45666654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.28  E-value=3.7e-11  Score=117.81  Aligned_cols=103  Identities=21%  Similarity=0.251  Sum_probs=77.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..++.. ...+|+|+|+++.|++.|+++....+... ..     +...+..+ +.. .++||+|
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~-----~~~~d~~~-~~~-~~~fDlV  116 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VT-----VVHGRAEE-FGQ-EEKFDVV  116 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EE-----EEeccHhh-CCC-CCCccEE
Confidence            4689999999999998887753 34699999999999999999888766532 21     33333322 333 4579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++.. +       .++..+++.++++|||||+|++.....
T Consensus       117 ~~~~-~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107        117 TSRA-V-------ASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             EEcc-c-------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            9964 2       345689999999999999999886543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.27  E-value=1.2e-10  Score=112.34  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=78.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+...       .+...+.....   .++||+|+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~d~~~~~---~~~fD~Vi   87 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGL-------DVVMTDLFKGV---RGKFDVIL   87 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCce-------EEEEccccccc---CCcccEEE
Confidence            457899999999999999988875 89999999999999999876543321       12333332222   24799999


Q ss_pred             EccchhhhccC-----------------HHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFES-----------------VQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes-----------------~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..+|+.-..                 ..-...+|+++.++|||||.+++...
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence            99777654110                 11256789999999999999988654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.27  E-value=3.5e-11  Score=120.25  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=77.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh------ccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK------EEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~------~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||+|||.|.++..++..|. .|+|+|+|+.+|+.+.+........      .........++..|+.+.-....+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            457999999999999999999996 8999999999999864422110000      000000001334443221111124


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +||+|+...++||+  +.+....+++.+.++|||||++++.+
T Consensus       113 ~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       113 PVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            69999999888887  56778889999999999999866654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.27  E-value=9.9e-11  Score=117.42  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=76.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh------ccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK------EEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~------~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||+|||.|.++..++..|. +|+|+|+|+.+|+.+..........      .........++..|+....+...+
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            457999999999999999999986 8999999999999875321110000      000000001333443322111224


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      .||+|+...++|++  +.+....+++.+.++|+|||++++
T Consensus       116 ~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        116 DVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence            69999999999887  567889999999999999997554

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.26  E-value=9.3e-11  Score=119.58  Aligned_cols=96  Identities=22%  Similarity=0.225  Sum_probs=73.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....+...        .+.      +.....+||+|+
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~--------~~~------~~~~~~~fD~Vv  184 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL--------NVY------LPQGDLKADVIV  184 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc--------eEE------EccCCCCcCEEE
Confidence            578999999999999988888776679999999999999999876654321        111      111112699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++...       .....++.++.++|||||+|+++..
T Consensus       185 ani~~-------~~~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        185 ANILA-------NPLLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             EcCcH-------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            97543       3456789999999999999999743

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.25  E-value=7.6e-11  Score=117.21  Aligned_cols=148  Identities=18%  Similarity=0.174  Sum_probs=98.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ...+.||+|+|.|+.+..++..-+.+|..+|+.+..++.|++........      .+.+|..++.+..| ..++||+|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~------v~~~~~~gLQ~f~P-~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPR------VGEFYCVGLQDFTP-EEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCC------EEEEEES-GGG-----TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCC------cceEEecCHhhccC-CCCcEeEEE
Confidence            46799999999999999877666789999999999999999876552222      23477776654444 346899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +++++.|+  +.+++..+|+.+...|+|||++++---...             -+.    ..|+.+              
T Consensus       128 ~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~-------------~~~----~~~D~~--------------  174 (218)
T PF05891_consen  128 IQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVKENVSS-------------SGF----DEFDEE--------------  174 (218)
T ss_dssp             EES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEEEEEES-------------SSE----EEEETT--------------
T ss_pred             ehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEEecCCC-------------CCC----cccCCc--------------
Confidence            99999998  888999999999999999999998421110             000    122221              


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                        ..+|.     -+.+.++++++++||+++....-
T Consensus       175 --DsSvT-----Rs~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  175 --DSSVT-----RSDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             --TTEEE-----EEHHHHHHHHHHCT-EEEEEEE-
T ss_pred             --cCeee-----cCHHHHHHHHHHcCCEEEEeccc
Confidence              01121     24578999999999999987643

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.25  E-value=1.6e-10  Score=112.69  Aligned_cols=99  Identities=16%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||+|||+|..+..++..+ ..+|+|+|+|+.|++.++++....+..+..      +...+..+ +.. .++||+|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~------~i~~d~~~-~~~-~~~fD~I~  114 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVE------IVNGRAED-FQH-EEQFDVIT  114 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeE------EEecchhh-ccc-cCCccEEE
Confidence            6799999999999888876543 358999999999999999887665443211      33444332 322 35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +.. +++       ...+++.+.++|+|||.+++..
T Consensus       115 s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       115 SRA-LAS-------LNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ehh-hhC-------HHHHHHHHHHhcCCCCEEEEEc
Confidence            875 433       3467888999999999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.24  E-value=3.8e-11  Score=117.69  Aligned_cols=105  Identities=17%  Similarity=0.260  Sum_probs=79.9

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      -.++||+|||.|.++..++... ..++++|+|+..|+.|++|.......        .+...++.+.+|.  ++||+|++
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V--------~~~~~dvp~~~P~--~~FDLIV~  112 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHV--------EWIQADVPEFWPE--GRFDLIVL  112 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSE--------EEEES-TTT---S--S-EEEEEE
T ss_pred             cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCe--------EEEECcCCCCCCC--CCeeEEEE
Confidence            4689999999999999998876 69999999999999999998765321        1445555555554  67999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ..+++|+ .+.+++..++.++...|+|||.||+....
T Consensus       113 SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  113 SEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             ES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            9999997 55678999999999999999999998764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.24  E-value=1.1e-10  Score=112.31  Aligned_cols=111  Identities=23%  Similarity=0.279  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCC-EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVK-HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~-~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||+|||+|..+..++..+.. +|+++|+++.+++.|+++....+... .     .++..|+.+.++  .++||+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v-----~~~~~d~~~~~~--~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-V-----EVVQSDLFEALP--DGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-E-----EEEESSTTTTCC--TTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-c-----cccccccccccc--ccceeEE
Confidence            4678999999999999998887643 79999999999999999988776653 1     145555555555  3579999


Q ss_pred             EEccchhhhcc-CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFE-SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFe-s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +|+-.+|.... ...-...+++.+.++|||||.|++.....
T Consensus       103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            99977665421 12347899999999999999998766554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG1541|consensus

Probab=99.24  E-value=3.2e-11  Score=119.22  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=94.3

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE  355 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d  355 (597)
                      +....+..+.....  .+.-|||||||+|.-...+...| ..++|+|||+.|++.|.++--+           ++....|
T Consensus        36 m~eRaLELLalp~~--~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-----------gdlil~D  101 (270)
T KOG1541|consen   36 MAERALELLALPGP--KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-----------GDLILCD  101 (270)
T ss_pred             HHHHHHHHhhCCCC--CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-----------cCeeeee
Confidence            44444444433211  35789999999999998888888 5899999999999999974222           2366667


Q ss_pred             hhccCCCCCCceeEEEEccchhhhcc-------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        356 LRSQYEDKALELDLVSCQFCIHYSFE-------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       356 l~e~l~~~~~sFDvVi~~~vLh~lFe-------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +.+.+|+..++||.||+..++.|++-       +...+..|+..++.+|++|+..++.+.-.
T Consensus       102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            78899999999999999988888762       33456788999999999999999987544

>PRK06922 hypothetical protein; Provisional

Probab=99.23  E-value=6.1e-11  Score=133.93  Aligned_cols=108  Identities=21%  Similarity=0.208  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD  368 (597)
                      ++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|+++....+...       .+...+... ++  ..+++||
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~i-------e~I~gDa~d-Lp~~fedeSFD  489 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSW-------NVIKGDAIN-LSSSFEKESVD  489 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCe-------EEEEcchHh-CccccCCCCEE
Confidence            4689999999999998887753 34599999999999999998765432211       123333221 22  2345799


Q ss_pred             EEEEccchhhhcc---------CHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFE---------SVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFe---------s~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|++.+++|+++.         +..+...+|++++++|||||.|++..
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999999998642         23578899999999999999999974

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.21  E-value=1.7e-10  Score=120.13  Aligned_cols=106  Identities=20%  Similarity=0.236  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..+++.|..+|+|+|+++.+++.|+++....+.....     ..+..+.. .  ...++||+|+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~-----~~~~~~~~-~--~~~~~fDlVv  230 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL-----QVKLIYLE-Q--PIEGKADVIV  230 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce-----EEEecccc-c--ccCCCceEEE
Confidence            46899999999999998888888779999999999999999987765443221     01222111 1  1235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~  412 (597)
                      ++...       .....++.++.++|||||+|+++......
T Consensus       231 an~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~~~  264 (288)
T TIGR00406       231 ANILA-------EVIKELYPQFSRLVKPGGWLILSGILETQ  264 (288)
T ss_pred             EecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence            98654       34467899999999999999998765543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.20  E-value=9.1e-11  Score=104.38  Aligned_cols=112  Identities=23%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFDvVi  371 (597)
                      +.+|||+|||+|.++..+++.+..+++|+|+++..++.|+.++.......+..     ++..|..... ....++||+|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~-----~~~~D~~~~~~~~~~~~~D~Iv   75 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVE-----VIVGDARDLPEPLPDGKFDLIV   75 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEE-----EEESHHHHHHHTCTTT-EEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEE-----EEECchhhchhhccCceeEEEE
Confidence            36899999999999999888775699999999999999999988765533321     4555532221 12236799999


Q ss_pred             EccchhhhccC----HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFES----VQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes----~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++-.++.....    ......+++.+.++|||||.+++.+++
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            98665432111    124578999999999999999998764

...

>PRK14968 putative methyltransferase; Provisional

Probab=99.19  E-value=4.6e-10  Score=107.75  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=79.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc-ccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE-ARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~-~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.++++........+ .     .++..++...+..  .+||+|
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-----~~~~~d~~~~~~~--~~~d~v   94 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGV-----EVIRSDLFEPFRG--DKFDVI   94 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcce-----EEEeccccccccc--cCceEE
Confidence            56789999999999999988876 6999999999999999988766544321 1     1344444444433  369999


Q ss_pred             EEccchhh-----------------hccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHY-----------------SFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~-----------------lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +++..+..                 ...+......+++++.++|||||.+++.++
T Consensus        95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            98754321                 001123467789999999999999988654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.18  E-value=4.6e-10  Score=109.10  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=75.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..+++.+ ..+|+|+|+++.+++.|+++....+... ..     +...+....+   .++||+|
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~-----~~~~d~~~~~---~~~~D~v  101 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-ID-----IIPGEAPIEL---PGKADAI  101 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eE-----EEecCchhhc---CcCCCEE
Confidence            56799999999999999887654 3589999999999999998876654321 10     2222222222   2469999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++....++       +..+++.+.++|+|||+|++.....
T Consensus       102 ~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~~~  134 (187)
T PRK08287        102 FIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFILL  134 (187)
T ss_pred             EECCCccC-------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence            99766543       3468899999999999999876443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.18  E-value=4e-10  Score=117.94  Aligned_cols=105  Identities=16%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....+...+..     +...|... .+.+  .+|+|
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~-----~~~~d~~~-~~~~--~~D~v  219 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMR-----GIAVDIYK-ESYP--EADAV  219 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEE-----EEecCccC-CCCC--CCCEE
Confidence            56799999999999999988764 358999998 789999999887766544332     23333221 1122  37999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..++|+.  +.+....+|+++++.|+|||+|++.-
T Consensus       220 ~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       220 LFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999899875  34566789999999999999998874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.18  E-value=1.4e-10  Score=119.56  Aligned_cols=101  Identities=21%  Similarity=0.348  Sum_probs=74.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ...+|||+|||+|.++..++...    ...++|+|+|+.|++.|+++....           .+...+. ..++...++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~-----------~~~~~d~-~~lp~~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQV-----------TFCVASS-HRLPFADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCC-----------eEEEeec-ccCCCcCCce
Confidence            35789999999999998876542    237999999999999998764321           0333332 2345555689


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      |+|++.++-           ..++++.++|||||+|++.+++...+..
T Consensus       153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e  189 (272)
T PRK11088        153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE  189 (272)
T ss_pred             eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence            999987542           2357899999999999999998876543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.18  E-value=1.2e-10  Score=128.91  Aligned_cols=104  Identities=17%  Similarity=0.252  Sum_probs=78.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.+++.....  . ..     .++..++. ..++.+.++||+|
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~--~-~i-----~~~~~d~~~~~~~~~~~~fD~I  107 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHY--K-NV-----KFMCADVTSPDLNISDGSVDLI  107 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccC--C-ce-----EEEEecccccccCCCCCCEEEE
Confidence            45789999999999999998775 59999999999999876542211  1 11     13333332 1233444679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|.+++||+  +.++...+++++.++|||||+|++.
T Consensus       108 ~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        108 FSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             ehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            999999997  3455789999999999999999885

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.16  E-value=7.7e-10  Score=108.77  Aligned_cols=113  Identities=15%  Similarity=0.084  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|+++....+......     +...+..+.++...++||+
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~-----~~~~d~~~~l~~~~~~~D~  114 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIV-----LIKGEAPEILFTINEKFDR  114 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeE-----EEEechhhhHhhcCCCCCE
Confidence            6789999999999999887653 2 3589999999999999999887665322111     2333322222222246999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHH
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMAR  416 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~  416 (597)
                      |++....       ..+..+++.+.++|||||+|++.....+.+...
T Consensus       115 V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~  154 (198)
T PRK00377        115 IFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETVNNA  154 (198)
T ss_pred             EEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHH
Confidence            9986432       456789999999999999999987777554433

>KOG1271|consensus

Probab=99.14  E-value=2.5e-10  Score=110.08  Aligned_cols=121  Identities=21%  Similarity=0.268  Sum_probs=87.0

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCE-EEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKH-VVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~-V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ..+|||||||+|.++..+++.++.. ++|+|.|+.+++.|+..+...+..+...     +-+.|+..+ ....++||+|+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~-----f~q~DI~~~-~~~~~qfdlvl  141 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIR-----FQQLDITDP-DFLSGQFDLVL  141 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCccee-----EEEeeccCC-cccccceeEEe
Confidence            3499999999999999999988644 9999999999999998877766654331     223333332 23346788888


Q ss_pred             EccchhhhccC----HHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhh
Q psy17742        372 CQFCIHYSFES----VQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRR  419 (597)
Q Consensus       372 ~~~vLh~lFes----~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~  419 (597)
                      --..+..+-.+    ...+...+..+.++|+|||+|+|+..|.  +.+.+.+..
T Consensus       142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~  195 (227)
T KOG1271|consen  142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN  195 (227)
T ss_pred             ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence            76554433111    2234567889999999999999998877  666665543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.14  E-value=1.2e-10  Score=115.78  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=100.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV  370 (597)
                      +-.++||||||||.....+...- .+++|+|||.+|++.|.++-.-..           .+.+++...++ ....+||+|
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~-----------L~~Aea~~Fl~~~~~er~DLi  192 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDT-----------LYVAEAVLFLEDLTQERFDLI  192 (287)
T ss_pred             ccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHH-----------HHHHHHHHHhhhccCCcccch
Confidence            35789999999999888776554 589999999999999987622110           22333222222 123579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..+|.|+    ..+..++--+..+|+|||.|.|++-...            .+|.  |.+.                 
T Consensus       193 ~AaDVl~Yl----G~Le~~~~~aa~~L~~gGlfaFSvE~l~------------~~~~--f~l~-----------------  237 (287)
T COG4976         193 VAADVLPYL----GALEGLFAGAAGLLAPGGLFAFSVETLP------------DDGG--FVLG-----------------  237 (287)
T ss_pred             hhhhHHHhh----cchhhHHHHHHHhcCCCceEEEEecccC------------CCCC--eecc-----------------
Confidence            999999999    8999999999999999999999864331            0111  1111                 


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                             ..-.|-.....++.+++..||+++....
T Consensus       238 -------ps~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         238 -------PSQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             -------hhhhhccchHHHHHHHHhcCceEEEeec
Confidence                   0112456667789999999999998764

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.14  E-value=2.8e-10  Score=111.74  Aligned_cols=117  Identities=17%  Similarity=0.147  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC--CCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY--EDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l--~~~~~sFD  368 (597)
                      ...+|||||||+|.++..++... ...|+|+|+++.|++.|+++....+..+..      +...+....+  ....+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~------~i~~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLH------VLCGDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEE------EEccCHHHHHHhhCCCCcee
Confidence            35689999999999999888753 358999999999999999887765443211      3333322111  01234799


Q ss_pred             EEEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        369 LVSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       369 vVi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      .|++++..+|. ....     ....+++.++++|||||.|++.+.+......
T Consensus        90 ~v~~~~pdpw~-k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~  140 (194)
T TIGR00091        90 KVFLNFPDPWP-KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFED  140 (194)
T ss_pred             EEEEECCCcCC-CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            99998765542 1100     0157999999999999999999988865544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.13  E-value=5.1e-10  Score=93.72  Aligned_cols=103  Identities=26%  Similarity=0.359  Sum_probs=75.6

Q ss_pred             EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEcc
Q psy17742        295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQF  374 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~  374 (597)
                      +|||+|||.|..+..++.....+++++|+++.+++.+++......... .     .++..+.........++||+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADN-V-----EVLKGDAEELPPEADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccc-e-----EEEEcChhhhccccCCceEEEEEcc
Confidence            489999999999998887555699999999999999885322221111 1     1333333322211235799999999


Q ss_pred             chhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        375 CIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       375 vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++++.   ......+++.+.+.|+|||.++++
T Consensus        75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98872   278889999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.13  E-value=4.2e-10  Score=120.08  Aligned_cols=107  Identities=18%  Similarity=0.264  Sum_probs=82.4

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ..+|||||||+|.++..+++.+ ..+|+++|+|+.|++.|+++....+...       .++..+....+   .++||+|+
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~-------~~~~~D~~~~~---~~~fDlIv  266 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG-------EVFASNVFSDI---KGRFDMII  266 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-------EEEEccccccc---CCCccEEE
Confidence            4589999999999999888764 3589999999999999999887655431       13333332222   35799999


Q ss_pred             EccchhhhccC-HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFES-VQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes-~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+..+|+.... ......+++++.++|||||.|++....
T Consensus       267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            99999874332 356789999999999999999887654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.12  E-value=2.6e-10  Score=119.23  Aligned_cols=100  Identities=25%  Similarity=0.299  Sum_probs=77.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.+++..++.|..+|+|+|+++.+++.|+++...++...+.      .+.  ......  .++||+|+
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~------~v~--~~~~~~--~~~~dlvv  230 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI------EVS--LSEDLV--EGKFDLVV  230 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE------EES--CTSCTC--CS-EEEEE
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE------EEE--Eecccc--cccCCEEE
Confidence            57899999999999999999999889999999999999999998887765432      111  112222  26799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++-..       +-+..++..+.++|+|||+|+++-.
T Consensus       231 ANI~~-------~vL~~l~~~~~~~l~~~G~lIlSGI  260 (295)
T PF06325_consen  231 ANILA-------DVLLELAPDIASLLKPGGYLILSGI  260 (295)
T ss_dssp             EES-H-------HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred             ECCCH-------HHHHHHHHHHHHhhCCCCEEEEccc
Confidence            98544       4456788999999999999999754

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.3e-10  Score=117.98  Aligned_cols=103  Identities=19%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.+++..++.|...++|+|+++.+++.|+++...++.....   ....|..   ...+. .++||+|+
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---~~~~~~~---~~~~~-~~~~DvIV  234 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV---QAKGFLL---LEVPE-NGPFDVIV  234 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh---hcccccc---hhhcc-cCcccEEE
Confidence            57899999999999999999999989999999999999999998877665211   0001211   11111 25799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++-.-       +-+..+...++++|||||+++++-.
T Consensus       235 ANILA-------~vl~~La~~~~~~lkpgg~lIlSGI  264 (300)
T COG2264         235 ANILA-------EVLVELAPDIKRLLKPGGRLILSGI  264 (300)
T ss_pred             ehhhH-------HHHHHHHHHHHHHcCCCceEEEEee
Confidence            98522       4456899999999999999999863

>PLN03075 nicotianamine synthase; Provisional

Probab=99.12  E-value=6.2e-10  Score=116.09  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             CCCEEEEECCCCChhHHHHHh--c-CCCEEEEEeCChHHHHHHHHHHHh-hhhhccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN--G-GVKHVVFADIASVSIEDCKTRYEE-LKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~--~-g~~~V~GIDiS~~mIe~A~er~~~-~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ++.+|||||||.|.++.-++.  . ...+++|+|+++.+++.|++.+.. .+...+..     +...++.+..+. .+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~-----F~~~Da~~~~~~-l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMF-----FHTADVMDVTES-LKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcE-----EEECchhhcccc-cCCc
Confidence            568999999998866554332  2 235899999999999999998854 44433331     333444333222 3569


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|+|. ++||+  +.++...+|+++.+.|+|||+|++-.
T Consensus       197 DlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        197 DVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEec
Confidence            999999 99886  44678899999999999999999976

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=6e-10  Score=110.35  Aligned_cols=101  Identities=18%  Similarity=0.168  Sum_probs=74.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..+++..  ..+|+|+|+++.+++.|++++...+.....     .+...+..+.++. .++||+
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v-----~~~~~d~~~~~~~-~~~fD~  145 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVV-----EVYHGDGKRGLEK-HAPFDA  145 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE-----EEEECCcccCCcc-CCCccE
Confidence            56899999999999998776542  258999999999999999988765543221     1344444333433 357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++..+++++    .      .++.+.|+|||+|++.+.
T Consensus       146 Ii~~~~~~~~----~------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        146 IIVTAAASTI----P------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             EEEccCcchh----h------HHHHHhcCcCcEEEEEEc
Confidence            9999887665    2      367899999999998653

>PRK14967 putative methyltransferase; Provisional

Probab=99.11  E-value=7.3e-10  Score=110.91  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=77.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+++|+|+++.+++.|+++....+...       .+...++...++  .++||+|+
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-------~~~~~d~~~~~~--~~~fD~Vi  106 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDV-------DVRRGDWARAVE--FRPFDVVV  106 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCee-------EEEECchhhhcc--CCCeeEEE
Confidence            568999999999999998887765699999999999999998876554321       133344333333  25799999


Q ss_pred             Eccchhhhcc-----------------CHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFE-----------------SVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFe-----------------s~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++-..+....                 .......+++.+.++|||||.|++....
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9743222100                 1123567899999999999999986543

>PRK04266 fibrillarin; Provisional

Probab=99.10  E-value=1.3e-09  Score=109.97  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sF  367 (597)
                      ++.+|||+|||+|.++..++... ...|+|+|+++.|++.+.++.....  + .     ..+..+...+   ... ..+|
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~--n-v-----~~i~~D~~~~~~~~~l-~~~~  142 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK--N-I-----IPILADARKPERYAHV-VEKV  142 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC--C-c-----EEEECCCCCcchhhhc-cccC
Confidence            67899999999999999887652 2489999999999998877655431  1 1     1233332211   111 1359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++...      .......+|+++.++|||||+|+++++.
T Consensus       143 D~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        143 DVIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             CEEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            99986422      1223456799999999999999998653

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.08  E-value=2.1e-10  Score=113.29  Aligned_cols=102  Identities=20%  Similarity=0.299  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|.|||||+|..+..+++. ..+.++|+|-|+.||+.|+.+..+..           +..+|+..--+.  ..+|++
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~-----------f~~aDl~~w~p~--~~~dll   96 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDAT-----------FEEADLRTWKPE--QPTDLL   96 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCc-----------eecccHhhcCCC--Cccchh
Confidence            5678999999999999888765 45799999999999999988865431           444554443333  359999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +++.+||++    ++-..+|..+...|.|||+|-+.+|+-
T Consensus        97 faNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          97 FANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence            999999999    677789999999999999999999876

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.08  E-value=1.3e-09  Score=117.69  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=80.2

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhc--cccccccceeehhhhccCCCCCCceeE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKE--EARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~--~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      +.+|||||||+|.++..++..+ ..+|+++|+|+.+++.|++++.......  ..     .++..+....++.  .+||+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v-----~~~~~D~l~~~~~--~~fDl  301 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRC-----EFMINNALSGVEP--FRFNA  301 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceE-----EEEEccccccCCC--CCEEE
Confidence            4689999999999999888764 4599999999999999999886554221  11     1333333333322  46999


Q ss_pred             EEEccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |+|+-.+|... .+.....++++.+.++|+|||.|++..-
T Consensus       302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            99998877642 1234567899999999999999999863

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.05  E-value=5.5e-09  Score=105.12  Aligned_cols=108  Identities=19%  Similarity=0.285  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+|||+|||+|..+..++... ..+++|+|+++.+++.|+++....+....      .+...+....++  .++||+|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~------~~~~~d~~~~~~--~~~fD~V  158 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV------TFLQSDWFEPLP--GGKFDLI  158 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeE------EEEECchhccCc--CCceeEE
Confidence            34689999999999999988752 35899999999999999998776544311      144444434343  3579999


Q ss_pred             EEccchhh------hcc----------------CHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHY------SFE----------------SVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~------lFe----------------s~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +++..++.      +..                .......+++++.++|+|||++++.+
T Consensus       159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            99643221      100                01224578999999999999999865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.04  E-value=1.8e-09  Score=107.56  Aligned_cols=101  Identities=20%  Similarity=0.163  Sum_probs=74.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..+++...  .+|+|+|+++.+++.|++++...+..+..      +...+....++. ..+||+
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~------~~~~d~~~~~~~-~~~fD~  149 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVI------VIVGDGTQGWEP-LAPYDR  149 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeE------EEECCcccCCcc-cCCCCE
Confidence            678999999999999988876532  36999999999999999998776543211      333443333322 247999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++..+..++          ...+.+.|+|||+|++.+..
T Consensus       150 Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       150 IYVTAAGPKI----------PEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             EEEcCCcccc----------cHHHHHhcCcCcEEEEEEcC
Confidence            9988766443          34578899999999987543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.04  E-value=1.7e-09  Score=108.51  Aligned_cols=148  Identities=20%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccc------cccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP------YRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~------~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+||..|||.|.++..|+..|. +|+|+|+|+.+|+.+.+.............      ....+++.|+...-+...+
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g  115 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG  115 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred             CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence            567999999999999999999996 999999999999999654332111000000      0001334443221122225


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      +||+|+-..+|+.+  +.+...+..+.+.++|+|||.+++.+..                        ++..... .|  
T Consensus       116 ~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~lLi~l~------------------------~~~~~~~-GP--  166 (218)
T PF05724_consen  116 KFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRGLLITLE------------------------YPQGEME-GP--  166 (218)
T ss_dssp             SEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEEEEEEE------------------------S-CSCSS-SS--
T ss_pred             CceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcEEEEEEE------------------------cCCcCCC-Cc--
Confidence            79999999999887  5678889999999999999995443321                        1110001 12  


Q ss_pred             ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                                     =|-++.+++++++. .+|++.....
T Consensus       167 ---------------Pf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  167 ---------------PFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             ---------------S----HHHHHHHHT-TTEEEEEEEE
T ss_pred             ---------------CCCCCHHHHHHHhc-CCcEEEEEec
Confidence                           23478899999999 8999887765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG3010|consensus

Probab=99.04  E-value=4.9e-10  Score=112.33  Aligned_cols=104  Identities=15%  Similarity=0.181  Sum_probs=75.2

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      ..++|+|||+|..++-++.. +.+|+|+|+|+.||+.|++..+..-.....      .+..+-...|....++.|+|+|.
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~------~ms~~~~v~L~g~e~SVDlI~~A  107 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPS------TMSSDEMVDLLGGEESVDLITAA  107 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCc------cccccccccccCCCcceeeehhh
Confidence            37999999999777766665 579999999999999998864433211111      22222222343335689999999


Q ss_pred             cchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEeCC
Q psy17742        374 FCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTVPD  409 (597)
Q Consensus       374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~pn  409 (597)
                      .++||.     +...++++++|+||+.| .+.+-..+
T Consensus       108 qa~HWF-----dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  108 QAVHWF-----DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             hhHHhh-----chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            999997     78899999999998755 66665444

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.02  E-value=5.4e-09  Score=102.47  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++.. ...+|+|+|+++.+++.|+++....+.....      ++..+....+......+|.|
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~------~~~~d~~~~~~~~~~~~d~v  113 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVE------VIEGSAPECLAQLAPAPDRV  113 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeE------EEECchHHHHhhCCCCCCEE
Confidence            5689999999999999887754 2358999999999999999988765442211      33333222121111235666


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      +...    .    .....+++++.++|+|||+|++..++.+.+.
T Consensus       114 ~~~~----~----~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  149 (196)
T PRK07402        114 CIEG----G----RPIKEILQAVWQYLKPGGRLVATASSLEGLY  149 (196)
T ss_pred             EEEC----C----cCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence            4421    1    3457899999999999999999998876544

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.01  E-value=5.3e-09  Score=106.47  Aligned_cols=136  Identities=20%  Similarity=0.254  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccc
Q psy17742        272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN  350 (597)
Q Consensus       272 vKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d  350 (597)
                      +.++|+..|....       ...+|||||||+|.....++.. ...+++|||+.+.+.+.|++.........+..     
T Consensus        31 ~DaiLL~~~~~~~-------~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~-----   98 (248)
T COG4123          31 TDAILLAAFAPVP-------KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQ-----   98 (248)
T ss_pred             cHHHHHHhhcccc-------cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhcee-----
Confidence            6677888887731       3689999999999999998877 44799999999999999999988876665542     


Q ss_pred             eeehhhhccCCCC-CCceeEEEEccchhhh--------------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHH
Q psy17742        351 VFSAELRSQYEDK-ALELDLVSCQFCIHYS--------------FESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQI  413 (597)
Q Consensus       351 ~F~~dl~e~l~~~-~~sFDvVi~~~vLh~l--------------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i  413 (597)
                      +++.|+.+..... ..+||+|+|+--+.-.              ++..-+.+.+++.+.++|||||.|.+..+-.  ..+
T Consensus        99 v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei  178 (248)
T COG4123          99 VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEI  178 (248)
T ss_pred             EehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHH
Confidence            5666643332221 2359999997433111              0112246889999999999999999987644  233


Q ss_pred             HHHHhh
Q psy17742        414 MARYRR  419 (597)
Q Consensus       414 ~~~l~~  419 (597)
                      ...++.
T Consensus       179 ~~~l~~  184 (248)
T COG4123         179 IELLKS  184 (248)
T ss_pred             HHHHHh
Confidence            444443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.00  E-value=3.5e-09  Score=105.52  Aligned_cols=100  Identities=23%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++...+..+..      +...+....++ ..++||+
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~------~~~gd~~~~~~-~~~~fD~  148 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVE------VIVGDGTLGYE-ENAPYDR  148 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeE------EEECCcccCCC-cCCCcCE
Confidence            67899999999999998777642  258999999999999999998766543211      33444333332 2357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++..+++.+          ...+.+.|||||+|++...
T Consensus       149 I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        149 IYVTAAGPDI----------PKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             EEECCCcccc----------hHHHHHhhCCCcEEEEEEc
Confidence            9998776443          2356778999999998653

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.98  E-value=3.1e-09  Score=112.66  Aligned_cols=120  Identities=18%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ ..++|+|+++.|+..|+.++...+... .     .++..|.. .++...++||+|+
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~-i-----~~~~~D~~-~l~~~~~~~D~Iv  253 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIED-F-----FVKRGDAT-KLPLSSESVDAIA  253 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC-C-----eEEecchh-cCCcccCCCCEEE
Confidence            57899999999999998877766 489999999999999999887655443 1     13444432 2343346799999


Q ss_pred             Eccchhhh--c-c--CHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        372 CQFCIHYS--F-E--SVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       372 ~~~vLh~l--F-e--s~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      +...+.-.  . .  ...-...+|+++.++|||||++++.+++...+...+..
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~  306 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAED  306 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhh
Confidence            96332110  0 0  11335789999999999999999999887655554443

This family is found exclusively in the Archaea.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.97  E-value=6.5e-09  Score=108.28  Aligned_cols=113  Identities=19%  Similarity=0.208  Sum_probs=80.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....+...+..     +...++.+.++.  ++||+|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~-----~~~~D~~~~~~~--~~fD~I  193 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVT-----LIQSDLFAALPG--RKYDLI  193 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECchhhccCC--CCccEE
Confidence            35789999999999999988753 3589999999999999999987765432221     444444444432  469999


Q ss_pred             EEccc------hhhh-----cc----------CHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        371 SCQFC------IHYS-----FE----------SVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       371 i~~~v------Lh~l-----Fe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +++--      +..+     ++          .......+++.+.++|+|||++++.+....
T Consensus       194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~  255 (284)
T TIGR03533       194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM  255 (284)
T ss_pred             EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence            99621      1100     00          012347889999999999999999987653

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.97  E-value=5.6e-09  Score=103.47  Aligned_cols=99  Identities=18%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|..+..++... .+++++|+++.+++.|++++...+.....      +...+....++. .++||+|+
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~------~~~~d~~~~~~~-~~~fD~I~  149 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVS------VRHGDGWKGWPA-YAPFDRIL  149 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceE------EEECCcccCCCc-CCCcCEEE
Confidence            57899999999999988777665 48999999999999999988765443211      333333333332 25799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +..+++++          .+.+.+.|+|||.+++.+.
T Consensus       150 ~~~~~~~~----------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        150 VTAAAPEI----------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence            98776554          3456789999999999876

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.96  E-value=7e-09  Score=111.93  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=85.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh---hccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL---RSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl---~e~l~~~~~sF  367 (597)
                      .+..+||||||+|.++..++... ...++|+|+++.+++.|.++....+..+..      ++..+.   ...++  ++++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~------~i~~DA~~ll~~~~--~~s~  193 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLL------IINYDARLLLELLP--SNSV  193 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEE------EEECCHHHhhhhCC--CCce
Confidence            35689999999999999988764 358999999999999999988776554322      344442   22343  4679


Q ss_pred             eEEEEccchhhhccCHH---HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        368 DLVSCQFCIHYSFESVQ---QARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~---d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      |.|++++...|. ....   -...+|+.++++|+|||.|.+.+-+.+....
T Consensus       194 D~I~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~  243 (390)
T PRK14121        194 EKIFVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF  243 (390)
T ss_pred             eEEEEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence            999998776552 1111   1157999999999999999999988865543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.95  E-value=1.3e-09  Score=103.97  Aligned_cols=143  Identities=15%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             EEEeCChHHHHHHHHHHHhhhh--hccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHh
Q psy17742        319 VFADIASVSIEDCKTRYEELKR--KEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAEC  396 (597)
Q Consensus       319 ~GIDiS~~mIe~A~er~~~~~~--~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rl  396 (597)
                      +|+|+|+.||+.|+++......  ..+.     .+...+ ...++...++||+|++.+++|++    .+...+|++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i-----~~~~~d-~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv   70 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCI-----EWIEGD-AIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV   70 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCce-----EEEEec-hhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence            5899999999999887543221  1111     133333 33456666789999999999998    6888999999999


Q ss_pred             ccCCcEEEEEeCChh--HHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHH
Q psy17742        397 LKPGGFFVGTVPDSN--QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAG  474 (597)
Q Consensus       397 LKPGG~fIit~pn~~--~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~  474 (597)
                      |||||.|++......  .+...+...   .+..      .... ..........|.+ +..++   +..++.+++.++++
T Consensus        71 LkpGG~l~i~d~~~~~~~~~~~~~~~---~~~~------~~~~-~~~~~~~~~~y~y-l~~si---~~f~~~~el~~ll~  136 (160)
T PLN02232         71 LKPGSRVSILDFNKSNQSVTTFMQGW---MIDN------VVVP-VATVYDLAKEYEY-LKYSI---NGYLTGEELETLAL  136 (160)
T ss_pred             cCcCeEEEEEECCCCChHHHHHHHHH---Hccc------hHhh-hhHHhCChHHHHh-HHHHH---HHCcCHHHHHHHHH
Confidence            999999987755431  111111110   0000      0000 0000000111211 11111   23578999999999


Q ss_pred             HcCCeEEEEEe
Q psy17742        475 EFGLKRILKEN  485 (597)
Q Consensus       475 eaGfelV~~~~  485 (597)
                      ++||+.+....
T Consensus       137 ~aGF~~~~~~~  147 (160)
T PLN02232        137 EAGFSSACHYE  147 (160)
T ss_pred             HcCCCcceEEE
Confidence            99999886543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.94  E-value=5e-09  Score=105.68  Aligned_cols=114  Identities=11%  Similarity=-0.023  Sum_probs=80.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh------hhccccccccceeehhhhccC--CCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK------RKEEARPYRRNVFSAELRSQY--EDK  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~------~~~~~~~~~~d~F~~dl~e~l--~~~  363 (597)
                      ++.+||+.|||.|.++..|+..|. +|+|+|+|+..|+.+.+......      ...........++.+|+.+.-  ...
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            457999999999999999999997 79999999999999876321100      000000000113444432211  112


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      .++||+|+-..+|+++  +.+...+..+.+.++|+|||.+++.+.
T Consensus       122 ~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        122 LPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             cCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            2579999999999998  567888999999999999999988653

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.93  E-value=3.2e-09  Score=105.80  Aligned_cols=106  Identities=18%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---------cC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---------QY  360 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---------~l  360 (597)
                      ++.+|||||||+|.++..+++..  ...|+|||+++ |.     ..     .. ..     ++..|+..         .+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~-----~~-v~-----~i~~D~~~~~~~~~i~~~~  113 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI-----VG-VD-----FLQGDFRDELVLKALLERV  113 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC-----CC-cE-----EEecCCCChHHHHHHHHHh
Confidence            56899999999999999887653  24899999998 21     00     00 11     23333211         23


Q ss_pred             CCCCCceeEEEEccchhhhccCH--H------HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742        361 EDKALELDLVSCQFCIHYSFESV--Q------QARCMLKNAAECLKPGGFFVGTVPDSNQIMARY  417 (597)
Q Consensus       361 ~~~~~sFDvVi~~~vLh~lFes~--~------d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l  417 (597)
                      .  .++||+|++..+.++. ...  +      ....+|+++.++|||||.|++.+...+.+.+.+
T Consensus       114 ~--~~~~D~V~S~~~~~~~-g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l  175 (209)
T PRK11188        114 G--DSKVQVVMSDMAPNMS-GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL  175 (209)
T ss_pred             C--CCCCCEEecCCCCccC-CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence            2  3579999998776653 211  1      125789999999999999999887765544433

>PRK00811 spermidine synthase; Provisional

Probab=98.92  E-value=6.6e-09  Score=108.15  Aligned_cols=113  Identities=17%  Similarity=0.278  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhh----ccccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRK----EEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~----~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      .+.+||+||||.|..+..+++. +..+|+++|+++.+++.|++.+......    .+.     .+...|....+....++
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv-----~v~~~Da~~~l~~~~~~  150 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRV-----ELVIGDGIKFVAETENS  150 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCce-----EEEECchHHHHhhCCCc
Confidence            4578999999999999998876 5679999999999999999987653211    111     13334433333323467


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ||+|++-..-++.....---..+++.++++|+|||+|++...+
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~  193 (283)
T PRK00811        151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS  193 (283)
T ss_pred             ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9999986543332000011367899999999999999986544

>PTZ00146 fibrillarin; Provisional

Probab=98.91  E-value=2e-08  Score=104.61  Aligned_cols=102  Identities=21%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~s  366 (597)
                      .++.+|||||||+|.++..+++.-  ...|+++|+++.|++...+......  + ..     .+..|...+  +.....+
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~--N-I~-----~I~~Da~~p~~y~~~~~~  202 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRP--N-IV-----PIIEDARYPQKYRMLVPM  202 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC--C-CE-----EEECCccChhhhhcccCC
Confidence            467899999999999999988752  2489999999986654444332211  1 11     223332211  1111236


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ||+|++..+.      ..+...++.++.++|||||+|++.
T Consensus       203 vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        203 VDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEE
Confidence            9999887542      245667788999999999999995

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.91  E-value=1.4e-08  Score=105.54  Aligned_cols=110  Identities=18%  Similarity=0.322  Sum_probs=79.5

Q ss_pred             CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      .+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++....+...+..     +...++.+.++.  .+||+|++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~-----~~~~d~~~~~~~--~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVE-----FIQSNLFEPLAG--QKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECchhccCcC--CCccEEEE
Confidence            689999999999999888754 3589999999999999999877665432221     344444444432  36999999


Q ss_pred             cc-------------chhhh-----cc---CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        373 QF-------------CIHYS-----FE---SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       373 ~~-------------vLh~l-----Fe---s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +-             +++|-     +.   .......++.++.++|+|||+|++.+.+.
T Consensus       189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            62             12211     00   12357789999999999999999988765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.88  E-value=1.3e-08  Score=103.81  Aligned_cols=98  Identities=17%  Similarity=0.291  Sum_probs=76.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ...++||||+|.|..+..++.. +.+|+++++|+.|....+++    +..         .+..+   .+.....+||+|+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g~~---------vl~~~---~w~~~~~~fDvIs  156 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----GFT---------VLDID---DWQQTDFKFDVIS  156 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----CCe---------EEehh---hhhccCCceEEEe
Confidence            4578999999999999999764 46899999999996665543    211         22221   1333345799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |.++|.-.    .++..+|+.+++.|+|+|++|+.+.-+
T Consensus       157 cLNvLDRc----~~P~~LL~~i~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  157 CLNVLDRC----DRPLTLLRDIRRALKPNGRLILAVVLP  191 (265)
T ss_pred             ehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            99999877    788999999999999999999987554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.87  E-value=1.9e-08  Score=105.99  Aligned_cols=110  Identities=18%  Similarity=0.216  Sum_probs=79.3

Q ss_pred             CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      .+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....+...+..     +...++.+.++.  ++||+|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~-----~~~~D~~~~l~~--~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVT-----LIESDLFAALPG--RRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEE-----EEECchhhhCCC--CCccEEEE
Confidence            689999999999999887653 3589999999999999999987765432221     444454444432  46999999


Q ss_pred             ccc------hhhh-----cc----------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        373 QFC------IHYS-----FE----------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       373 ~~v------Lh~l-----Fe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +-.      +..+     ++          .......+++++.++|+|||++++.+...
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            621      1100     00          01335788999999999999999988655

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.87  E-value=2.8e-08  Score=101.69  Aligned_cols=108  Identities=20%  Similarity=0.352  Sum_probs=75.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++.. .......     .++..++...++  .++||+|
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i-----~~~~~d~~~~~~--~~~fD~I  179 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARV-----EFLQGDWFEPLP--GGRFDLI  179 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcE-----EEEEccccCcCC--CCceeEE
Confidence            46789999999999999887654 4689999999999999999876 1111111     133444333333  3579999


Q ss_pred             EEccch------hhh-------------c---cCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCI------HYS-------------F---ESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vL------h~l-------------F---es~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +++...      +.+             +   ........+++++.++|+|||++++.+
T Consensus       180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            995321      100             0   012345789999999999999999965

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.86  E-value=7.8e-08  Score=93.78  Aligned_cols=128  Identities=18%  Similarity=0.202  Sum_probs=94.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++.+++|||||+|..+..|+..+ ..+|+++|-++++++..+++....+..+..      ....+..+.++... +||.
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~------vv~g~Ap~~L~~~~-~~da  105 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE------VVEGDAPEALPDLP-SPDA  105 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEE------EEeccchHhhcCCC-CCCE
Confidence            378899999999999999998544 469999999999999999998887754332      33333333344332 6999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQC  434 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F  434 (597)
                      |+....-        ....+|+.+...|||||++|......+.+...+.......+. ++-.+..
T Consensus       106 iFIGGg~--------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~i  161 (187)
T COG2242         106 IFIGGGG--------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQI  161 (187)
T ss_pred             EEECCCC--------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEe
Confidence            9988762        446889999999999999999999887776665544322222 5554443

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.86  E-value=1.1e-08  Score=99.76  Aligned_cols=100  Identities=21%  Similarity=0.224  Sum_probs=66.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh---------ccC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR---------SQY  360 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~---------e~l  360 (597)
                      ++.+|||+|||+|.++..++...  ..+|+|+|+|+.+      ..  .+..         +...+..         ..+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--~~i~---------~~~~d~~~~~~~~~l~~~~   94 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--ENVD---------FIRGDFTDEEVLNKIRERV   94 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--CCce---------EEEeeCCChhHHHHHHHHh
Confidence            67899999999999988876543  3479999999864      11  0110         2222211         112


Q ss_pred             CCCCCceeEEEEccchh--------hhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        361 EDKALELDLVSCQFCIH--------YSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       361 ~~~~~sFDvVi~~~vLh--------~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +  .++||+|++..+.|        +. ........+|+++.++|+|||+|++.+...+
T Consensus        95 ~--~~~~D~V~~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~  150 (188)
T TIGR00438        95 G--DDKVDVVMSDAAPNISGYWDIDHL-RSIDLVELALDIAKEVLKPKGNFVVKVFQGE  150 (188)
T ss_pred             C--CCCccEEEcCCCCCCCCCccccHH-HHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence            2  34699999865432        11 1123457899999999999999999766653

>PRK04457 spermidine synthase; Provisional

Probab=98.83  E-value=1.9e-08  Score=103.71  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||.|..+..++.. +..+++++|+++.+++.|++.+.......+..     +...|..+.+....++||+|
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~-----v~~~Da~~~l~~~~~~yD~I  140 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFE-----VIEADGAEYIAVHRHSTDVI  140 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceE-----EEECCHHHHHHhCCCCCCEE
Confidence            4578999999999999887654 34589999999999999999865432211111     33344332232223579999


Q ss_pred             EEccchhhh-ccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        371 SCQFCIHYS-FESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       371 i~~~vLh~l-Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      ++.. ++.. ....-....+++.+.++|+|||+|++...+..
T Consensus       141 ~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~  181 (262)
T PRK04457        141 LVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD  181 (262)
T ss_pred             EEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence            8752 2211 00001136899999999999999999765543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.81  E-value=9e-08  Score=98.03  Aligned_cols=109  Identities=16%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLV  370 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvV  370 (597)
                      +.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...+..         ++..++.+.++. ..++||+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~---------~~~~D~~~~l~~~~~~~fDlV  157 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGT---------VHEGDLYDALPTALRGRVDIL  157 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCE---------EEEeechhhcchhcCCCEeEE
Confidence            458999999999999987754 2358999999999999999987654421         333333322221 12469999


Q ss_pred             EEccch------hhh------cc----------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCI------HYS------FE----------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vL------h~l------Fe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +++--.      +.+      ++          ..+-.+.+++.+.++|+|||+|++.+...
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            997422      111      00          01224688899999999999999987644

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=3.6e-08  Score=102.56  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=87.0

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||+|||.|.+...+++.. ..+++.+|++..+|+.|+++...+......      ++..++.+...   ++||+|+
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~------v~~s~~~~~v~---~kfd~Ii  229 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTE------VWASNLYEPVE---GKFDLII  229 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccE------EEEeccccccc---ccccEEE
Confidence            4589999999999999988775 469999999999999999998877655321      45544444443   3799999


Q ss_pred             EccchhhhccCH-HHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        372 CQFCIHYSFESV-QQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       372 ~~~vLh~lFes~-~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      |+--||---... .-..++++...++|++||.|.+..-..-.....+.
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~  277 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK  277 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence            998887641111 12358999999999999999887764433333333

>PHA03411 putative methyltransferase; Provisional

Probab=98.80  E-value=4.8e-08  Score=100.98  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=68.9

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ..+|||+|||+|.++..++... ..+|+|+|+++.|++.|+++...      .     .+...++.....  ..+||+|+
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~------v-----~~v~~D~~e~~~--~~kFDlII  131 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE------A-----EWITSDVFEFES--NEKFDVVI  131 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcC------C-----EEEECchhhhcc--cCCCcEEE
Confidence            4689999999999988776642 35899999999999999886431      1     144444433222  24699999


Q ss_pred             EccchhhhccC-HHH---------------HHHHHHHHHHhccCCcEEEEE
Q psy17742        372 CQFCIHYSFES-VQQ---------------ARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       372 ~~~vLh~lFes-~~d---------------~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++-.+++.-.. ..+               ...+++.+..+|+|+|.+++.
T Consensus       132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            98887764111 011               245667777788888866654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.79  E-value=1.1e-07  Score=94.31  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=99.1

Q ss_pred             EEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-CCC------CCCc
Q psy17742        295 KVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YED------KALE  366 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~------~~~s  366 (597)
                      +|||||||+|..+..++..- .-...-.|+.+..+..........+..+...     -+..|+... ++.      ...+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-----P~~lDv~~~~w~~~~~~~~~~~~  102 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-----PLALDVSAPPWPWELPAPLSPES  102 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-----CeEeecCCCCCccccccccCCCC
Confidence            69999999999999988753 2367788998888766666555544433221     122222221 222      2357


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEE----EEecCCCCCCC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQ----VQCLFDTSRPP  442 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~----I~F~~~~~d~~  442 (597)
                      ||+|+|..++|-+  +......+++.+.++|++||.|++=-|-..               +..+.    ..|+..+...-
T Consensus       103 ~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~---------------~G~~ts~SN~~FD~sLr~rd  165 (204)
T PF06080_consen  103 FDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGPFNR---------------DGKFTSESNAAFDASLRSRD  165 (204)
T ss_pred             cceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCCccc---------------CCEeCCcHHHHHHHHHhcCC
Confidence            9999999999887  667889999999999999999987332110               00010    11222111222


Q ss_pred             CCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        443 PLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       443 p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                      |.+|                +-+.+.+.++++++||+++...
T Consensus       166 p~~G----------------iRD~e~v~~lA~~~GL~l~~~~  191 (204)
T PF06080_consen  166 PEWG----------------IRDIEDVEALAAAHGLELEEDI  191 (204)
T ss_pred             CCcC----------------ccCHHHHHHHHHHCCCccCccc
Confidence            3333                2478899999999999988654

The function of this family is unknown.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.79  E-value=2.2e-08  Score=116.35  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..|..+|+++|+|+.+++.|++++..++.. .+..     ++..|..+.+....++||+|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~-----~i~~D~~~~l~~~~~~fDlI  612 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHR-----LIQADCLAWLKEAREQFDLI  612 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceE-----EEEccHHHHHHHcCCCcCEE
Confidence            36799999999999999999888778999999999999999998876653 2221     44444332221113579999


Q ss_pred             EEccch-------hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCI-------HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vL-------h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++.--.       ...+....+...++..+.++|+|||.|++++...
T Consensus       613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            995321       1122223567788999999999999998876443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.77  E-value=7.5e-08  Score=104.81  Aligned_cols=119  Identities=14%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-CCCCCCceeEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YEDKALELDLV  370 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~~~~sFDvV  370 (597)
                      +.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|+++....+..  .     .+...++.+. ++. .++||+|
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~r--V-----~fi~gDl~e~~l~~-~~~FDLI  323 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGAR--V-----EFAHGSWFDTDMPS-EGKWDII  323 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCc--E-----EEEEcchhcccccc-CCCccEE
Confidence            468999999999999887754 3468999999999999999998765432  1     1334443222 222 2469999


Q ss_pred             EEccchhh------------------hc---cCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhh
Q psy17742        371 SCQFCIHY------------------SF---ESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~------------------lF---es~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~  419 (597)
                      +|+-...-                  ++   ....-.+.+++.+.++|+|||++++.+...  +.+...+..
T Consensus       324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~  395 (423)
T PRK14966        324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE  395 (423)
T ss_pred             EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence            99643100                  00   011235678888899999999998876553  455555543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.75  E-value=1.4e-07  Score=104.02  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee
Q psy17742        274 SMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS  353 (597)
Q Consensus       274 s~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~  353 (597)
                      ..++...+..+..    .++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+..+.      .++.
T Consensus       283 e~l~~~vl~~l~~----~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v------~~~~  351 (443)
T PRK13168        283 QKMVARALEWLDP----QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNV------TFYH  351 (443)
T ss_pred             HHHHHHHHHHhcC----CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCce------EEEE
Confidence            3455554444322    256799999999999999988776 5999999999999999998876654321      1444


Q ss_pred             hhhhccC---CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        354 AELRSQY---EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       354 ~dl~e~l---~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      .+..+.+   +...++||+|++.-.-.       ....+++.+.+ ++|++++++++ |+..+...+.
T Consensus       352 ~d~~~~l~~~~~~~~~fD~Vi~dPPr~-------g~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~  410 (443)
T PRK13168        352 ANLEEDFTDQPWALGGFDKVLLDPPRA-------GAAEVMQALAK-LGPKRIVYVSC-NPATLARDAG  410 (443)
T ss_pred             eChHHhhhhhhhhcCCCCEEEECcCCc-------ChHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHH
Confidence            4433222   12234699998863321       12345555555 68999888887 5555544443

>KOG2899|consensus

Probab=98.75  E-value=9.7e-08  Score=96.03  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=77.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccc------------------------
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARP------------------------  346 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~------------------------  346 (597)
                      .+..+|||||-.|..+..+++. +...++|+||++..|..|++..+..........                        
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            4678999999999999998764 567899999999999999997654321111000                        


Q ss_pred             --cc--cceeehh-----hhccCCCCCCceeEEEEccchhhhc--cCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        347 --YR--RNVFSAE-----LRSQYEDKALELDLVSCQFCIHYSF--ESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       347 --~~--~d~F~~d-----l~e~l~~~~~sFDvVi~~~vLh~lF--es~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                        .+  ...|...     ..+.+......||+|+|..+--|+.  -+.+.+..+|+.++++|.|||+||+.--.
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp  211 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP  211 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence              00  0001000     0111112235699999976522221  23467899999999999999999986433

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.75  E-value=7.6e-08  Score=105.66  Aligned_cols=114  Identities=17%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-CCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|+.+..++.. +..+|+|+|+++.+++.+++++...+......     ....+.... .....++||.
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~-----~~~~d~~~~~~~~~~~~fD~  312 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAE-----TKDGDGRGPSQWAENEQFDR  312 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEE-----EeccccccccccccccccCE
Confidence            6789999999999999887764 23589999999999999999987765432110     122221111 1012357999


Q ss_pred             EEEc------cchhhhcc-----CHH-------HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQ------FCIHYSFE-----SVQ-------QARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~------~vLh~lFe-----s~~-------d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++-      ++++...+     +..       ....+|.++.++|||||+|+.++..-
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9862      23433210     111       14689999999999999999887544

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.74  E-value=3.7e-08  Score=107.24  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhcc---CCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQ---YEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~---l~~~~~sF  367 (597)
                      ++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..++... ...     ++..|..+.   +....++|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~-----~i~~D~~~~l~~~~~~~~~f  294 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAE-----FVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEE-----EEEccHHHHHHHHHhcCCCC
Confidence            368899999999999887666676799999999999999999988766531 221     344443222   21223579


Q ss_pred             eEEEEccch---h--hhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCI---H--YSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vL---h--~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++.--.   .  .++........+++.+.++|+|||+|+.++.+
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999987331   0  01111134566777889999999999976643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.73  E-value=3.9e-08  Score=97.26  Aligned_cols=112  Identities=21%  Similarity=0.400  Sum_probs=65.4

Q ss_pred             CCCEEEEECCCCChhH----HHHHh---cCC---CEEEEEeCChHHHHHHHHH-HHhhhhhccc----cccc--------
Q psy17742        292 SPIKVLDMGSGKGGDM----LKWIN---GGV---KHVVFADIASVSIEDCKTR-YEELKRKEEA----RPYR--------  348 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l----~~la~---~g~---~~V~GIDiS~~mIe~A~er-~~~~~~~~~~----~~~~--------  348 (597)
                      +..+|+-.||++|.-.    ..+..   ...   -+++|+|||+.+|+.|++- |.........    ..++        
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            5689999999999822    22333   111   3899999999999999872 1111111000    0000        


Q ss_pred             --------ccee-ehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        349 --------RNVF-SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       349 --------~d~F-~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                              ...| ..++.+ .....+.||+|+|..+|-|+  +.+...++++.+++.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                    0011 122333 12234679999999999997  6677899999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.73  E-value=1e-07  Score=100.99  Aligned_cols=100  Identities=15%  Similarity=0.094  Sum_probs=71.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..+++...  ..|+|+|+++.+++.|+++....+.....      +...+....++. .++||+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~------~i~gD~~~~~~~-~~~fD~  152 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVI------FVCGDGYYGVPE-FAPYDV  152 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEE------EEeCChhhcccc-cCCccE
Confidence            568999999999999988876432  36999999999999999988766543211      333333333322 246999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++..+++.+          ...+.+.|+|||.+++...
T Consensus       153 Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        153 IFVTVGVDEV----------PETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             EEECCchHHh----------HHHHHHhcCCCCEEEEEeC
Confidence            9998766443          2345678999999988653

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.72  E-value=9.1e-08  Score=105.56  Aligned_cols=112  Identities=20%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|..+..++..  +..+|+|+|+++.+++.++++....+.....      +...|.......-.++||+
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~------~~~~D~~~~~~~~~~~fD~  323 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIE------TKALDARKVHEKFAEKFDK  323 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE------EEeCCcccccchhcccCCE
Confidence            5689999999999999887764  2358999999999999999998776543211      3334322211111146999


Q ss_pred             EEEccc------hhhh-----ccCHHH-------HHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFC------IHYS-----FESVQQ-------ARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~v------Lh~l-----Fes~~d-------~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++...      +.+.     ..+..+       ...+|+++.++|||||.|+.++..
T Consensus       324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            997421      1110     011122       256899999999999999976543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.71  E-value=1.3e-07  Score=103.99  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=75.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDv  369 (597)
                      ++.+|||+|||+|..+..++.... ..|+|+|+++.+++.+++++...+....       +...|...... ...++||.
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~-------~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKAT-------VIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-------EEEcCcccchhhcccCCCCE
Confidence            678999999999999988877542 5899999999999999999877654321       33333222111 12356999


Q ss_pred             EEEccc------h------hhhccCHH-------HHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFC------I------HYSFESVQ-------QARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~v------L------h~lFes~~-------d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++.-.      +      .|. .+..       ....+|..+.++|||||+++.++.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~-~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWL-RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             EEECCCCCcccccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            995321      1      111 1122       235789999999999999998774

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.71  E-value=1.2e-07  Score=104.40  Aligned_cols=112  Identities=14%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFD  368 (597)
                      ++.+|||+|||+|+.+..++..  +..+|+++|+++.+++.+++++...+.....      +...|.. .++ ...++||
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~------~~~~Da~-~l~~~~~~~fD  309 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIE------IKIADAE-RLTEYVQDTFD  309 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEE------EEECchh-hhhhhhhccCC
Confidence            6789999999999988877654  2358999999999999999998876553211      3333322 122 1235699


Q ss_pred             EEEEcc---chhhhc--------cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQF---CIHYSF--------ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~---vLh~lF--------es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .|++--   .+..+-        .+.       ....++|.++.++|||||+++.++...
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            998721   122210        011       123678999999999999999987654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.70  E-value=2e-07  Score=92.44  Aligned_cols=108  Identities=11%  Similarity=0.031  Sum_probs=75.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+|+++|+++.+++.|++++...+... .     .++..++...++...++||+|+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v-----~~~~~D~~~~l~~~~~~fDlV~  126 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN-A-----RVVNTNALSFLAQPGTPHNVVF  126 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc-E-----EEEEchHHHHHhhcCCCceEEE
Confidence            457999999999999987665666799999999999999999877765432 1     1444444333322224699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHH--hccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAE--CLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~r--lLKPGG~fIit~pn~  410 (597)
                      +.--++.     .-...++..+..  +|+|+|++++.....
T Consensus       127 ~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        127 VDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             ECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            9865322     223345555544  489999999987654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.70  E-value=1.1e-07  Score=104.93  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=75.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|+.+..++..  +..+|+|+|+|+.+++.++++....+.....      +...+.....+  .++||+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~------~~~~Da~~~~~--~~~fD~  321 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIE------TIEGDARSFSP--EEQPDA  321 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEE------EEeCccccccc--CCCCCE
Confidence            5689999999999988776642  2348999999999999999998776553211      33333222222  246999


Q ss_pred             EEEc----c--ch------hhhccCHH-------HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQ----F--CI------HYSFESVQ-------QARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~----~--vL------h~lFes~~-------d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++-    .  ++      .+. -+..       ....+|.++.++|||||+++..+...
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~-~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWK-LTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhc-CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9962    1  11      011 1111       23468999999999999999988554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.70  E-value=8.3e-08  Score=107.59  Aligned_cols=111  Identities=19%  Similarity=0.279  Sum_probs=77.1

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|+++....+...+..     +...++...++  .++||+|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~-----~~~~D~~~~~~--~~~fDlIv  211 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQ-----IIHSNWFENIE--KQKFDFIV  211 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCcccee-----eeecchhhhCc--CCCccEEE
Confidence            468999999999999887754 34589999999999999999877655432221     33444333343  24699999


Q ss_pred             Eccch--------------hh-----hcc---CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCI--------------HY-----SFE---SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vL--------------h~-----lFe---s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+-..              .|     +|.   .......+++++.++|+|||.|++.+-..
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~  272 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK  272 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence            95321              01     111   11345678899999999999999876433

>KOG2940|consensus

Probab=98.69  E-value=1.1e-08  Score=101.78  Aligned_cols=131  Identities=17%  Similarity=0.318  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc
Q psy17742        270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR  349 (597)
Q Consensus       270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~  349 (597)
                      .++|..+-..+..++...+.  ....++|||||.|.....+...++.+++.+|.|..|++.++..- +.....       
T Consensus        52 dylkeeig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~-------  121 (325)
T KOG2940|consen   52 DYLKEEIGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIET-------  121 (325)
T ss_pred             hHHHHHHHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEE-------
Confidence            44554444444444443322  34679999999999999999999999999999999999998642 221111       


Q ss_pred             ceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       350 d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      ..|..| .+.+++...+||+|++..++||+    .++...+.+|+..|||+|.|+.++...+.+.+
T Consensus       122 ~~~v~D-EE~Ldf~ens~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~FiasmlggdTLyE  182 (325)
T KOG2940|consen  122 SYFVGD-EEFLDFKENSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGDTLYE  182 (325)
T ss_pred             EEEecc-hhcccccccchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccccHHH
Confidence            134332 34556666789999999999999    88899999999999999999999988887765

>TIGR00417 speE spermidine synthase

Probab=98.69  E-value=9.3e-08  Score=98.76  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+||+||||+|..+..+++.. ..+++++|+++.+++.|++.+.......... . ..+...|....+....++||+|+
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~-~-v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDP-R-VDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCC-c-eEEEECchHHHHHhCCCCccEEE
Confidence            4599999999999998887765 5789999999999999999775532110000 0 01222332222222235799999


Q ss_pred             EccchhhhccCHHH--HHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQ--ARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d--~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +.......  ....  ...+++.++++|+|||++++...++
T Consensus       151 ~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~  189 (270)
T TIGR00417       151 VDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSESP  189 (270)
T ss_pred             EeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence            86542221  1112  3688999999999999999875544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.67  E-value=1.7e-07  Score=96.56  Aligned_cols=112  Identities=19%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|+.+..++...  ...|+++|+++.+++.+++++...+..+..      +...|.. .++...+.||+
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~------~~~~D~~-~~~~~~~~fD~  143 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVA------VTNFDGR-VFGAAVPKFDA  143 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEE------EecCCHH-HhhhhccCCCE
Confidence            67899999999999998876531  248999999999999999998876543211      3333322 12222245999


Q ss_pred             EEEcc------chhhhc-----cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQF------CIHYSF-----ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~------vLh~lF-----es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++--      ++..-.     -+.       .....+|+++.++|||||+|+.++...
T Consensus       144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            98631      111100     011       123569999999999999999886543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.67  E-value=1.6e-07  Score=103.33  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC---CCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY---EDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l---~~~~~s  366 (597)
                      ++.+|||+|||+|+.+..++..  +..+|+++|+++.+++.+++++...+..+..      +...|.....   +...++
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~------~~~~D~~~~~~~~~~~~~~  325 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIK------ILAADSRNLLELKPQWRGY  325 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEE------EEeCChhhccccccccccc
Confidence            5789999999999999887764  2348999999999999999998877654321      3333322211   112357


Q ss_pred             eeEEEEc------cchhhhcc-----CHHH-------HHHHHHHHHHhccCCcEEEEEeC
Q psy17742        367 LDLVSCQ------FCIHYSFE-----SVQQ-------ARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       367 FDvVi~~------~vLh~lFe-----s~~d-------~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ||.|++-      .++++..+     +..+       ...+|.++.++|||||+|+.++.
T Consensus       326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            9999963      23332200     1111       46889999999999999987763

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.67  E-value=1.6e-07  Score=93.87  Aligned_cols=100  Identities=20%  Similarity=0.253  Sum_probs=72.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+.-++.. + ...|+++|+.+..++.|++++...+..+..      +...|....++.. ++||.
T Consensus        72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~------~~~gdg~~g~~~~-apfD~  144 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVE------VVVGDGSEGWPEE-APFDR  144 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEE------EEES-GGGTTGGG--SEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCcee------EEEcchhhccccC-CCcCE
Confidence            7899999999999998877654 2 347999999999999999999887765432      4444444455543 57999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++..+...+    +      ..+.+.||+||++++-+.
T Consensus       145 I~v~~a~~~i----p------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  145 IIVTAAVPEI----P------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             EEEeeccchH----H------HHHHHhcCCCcEEEEEEc
Confidence            9999877443    2      336678999999999765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2e-07  Score=92.65  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=79.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+.-+++... +|+.+|+.+...+.|++++...+..+..      ..+.|-...++.. .+||.|+
T Consensus        72 ~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~------v~~gDG~~G~~~~-aPyD~I~  143 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVT------VRHGDGSKGWPEE-APYDRII  143 (209)
T ss_pred             CCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceE------EEECCcccCCCCC-CCcCEEE
Confidence            789999999999999998888763 9999999999999999999988775532      5555556667653 5799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +..+...+    +      +.+.+.|||||++++-+-
T Consensus       144 Vtaaa~~v----P------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         144 VTAAAPEV----P------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EeeccCCC----C------HHHHHhcccCCEEEEEEc
Confidence            98777444    2      335678999999999765

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.8e-07  Score=97.37  Aligned_cols=115  Identities=21%  Similarity=0.336  Sum_probs=80.9

Q ss_pred             EEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        295 KVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      +|||||||+|..+..++.... ..|+|+|+|+.+++.|++++...+.....      .+..++...+.   ++||+|+++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~------~~~~dlf~~~~---~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVL------VVQSDLFEPLR---GKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEE------EEeeecccccC---CceeEEEeC
Confidence            799999999999999887763 49999999999999999998887752111      22223333333   479999997


Q ss_pred             cc-h-----hh------------hc---cCHHHHHHHHHHHHHhccCCcEEEEEeC-Ch-hHHHHHHh
Q psy17742        374 FC-I-----HY------------SF---ESVQQARCMLKNAAECLKPGGFFVGTVP-DS-NQIMARYR  418 (597)
Q Consensus       374 ~v-L-----h~------------lF---es~~d~~~~L~~i~rlLKPGG~fIit~p-n~-~~i~~~l~  418 (597)
                      -- +     +.            ++   ...+-...++.++.+.|+|||++++.+- +. ..+.+.+.
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~  251 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE  251 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence            31 0     00            11   1123468899999999999999999876 22 44444443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.64  E-value=2.6e-07  Score=94.84  Aligned_cols=155  Identities=20%  Similarity=0.278  Sum_probs=96.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-----------------------cccccc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-----------------------EARPYR  348 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-----------------------~~~~~~  348 (597)
                      ++.++||||||.-.+...-+...+.+++..|.++..++..++-.++.+...                       +....+
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            467999999998665433333445789999999999988777554421100                       000011


Q ss_pred             cceeehhhhcc--CCC---CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccC
Q psy17742        349 RNVFSAELRSQ--YED---KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSA  423 (597)
Q Consensus       349 ~d~F~~dl~e~--l~~---~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~  423 (597)
                      ..++..|+.+.  +..   ...+||+|++.+++..+..+.+....+++++.++|||||.|++...               
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~---------------  200 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV---------------  200 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE---------------
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE---------------
Confidence            22333332222  222   1235999999999999999999999999999999999999998653               


Q ss_pred             ccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        424 SFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       424 ~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                       ++...|.+             |.+         ..+-..++.+.+++.++++||.++...
T Consensus       201 -l~~t~Y~v-------------G~~---------~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  201 -LGSTYYMV-------------GGH---------KFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             -SS-SEEEE-------------TTE---------EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             -cCceeEEE-------------CCE---------ecccccCCHHHHHHHHHHcCCEEEecc
Confidence             22223321             111         112234788999999999999999877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.63  E-value=2.4e-07  Score=93.98  Aligned_cols=103  Identities=14%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-----CCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-----DKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-----~~~  364 (597)
                      ++.+|||||||+|.-+..++..  +..+|+++|+++.+++.|++++...+...+..     +...+..+.++     ...
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~-----~~~gda~~~L~~l~~~~~~  142 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKIN-----FIQSDALSALDQLLNNDPK  142 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEccHHHHHHHHHhCCCC
Confidence            4679999999999977766543  23599999999999999999998877653332     33333222111     113


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++||+|++-..       .+....++..+.++|+|||.+++.
T Consensus       143 ~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        143 PEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            57999987522       245667899999999999999875

>PLN02366 spermidine synthase

Probab=98.60  E-value=2.5e-07  Score=97.64  Aligned_cols=111  Identities=18%  Similarity=0.260  Sum_probs=75.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhh---hccccccccceeehhhhccCCC-CCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKR---KEEARPYRRNVFSAELRSQYED-KALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~---~~~~~~~~~d~F~~dl~e~l~~-~~~s  366 (597)
                      .+.+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+.....   ..+.     .+...|....+.. ..++
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv-----~vi~~Da~~~l~~~~~~~  165 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV-----NLHIGDGVEFLKNAPEGT  165 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce-----EEEEChHHHHHhhccCCC
Confidence            46899999999999999988764 57899999999999999998765321   1111     1333332222221 1357


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ||+|++-..-+......---..+++.++++|+|||+|+...
T Consensus       166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            99999864432211000113578999999999999998743

>PRK01581 speE spermidine synthase; Validated

Probab=98.59  E-value=4.3e-07  Score=97.24  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHH--HHhhh---h-hccccccccceeehhhhccCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTR--YEELK---R-KEEARPYRRNVFSAELRSQYEDKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er--~~~~~---~-~~~~~~~~~d~F~~dl~e~l~~~~  364 (597)
                      .+.+||+||||.|..+..+++.. ..+|++||+++.+++.|++.  +....   . ..+.     .+...|....+....
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV-----~vvi~Da~~fL~~~~  224 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRV-----NVHVCDAKEFLSSPS  224 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCce-----EEEECcHHHHHHhcC
Confidence            45799999999999988887754 57999999999999999962  11111   0 1111     133333333333334


Q ss_pred             CceeEEEEccchhhh-ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        365 LELDLVSCQFCIHYS-FESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       365 ~sFDvVi~~~vLh~l-Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++||+|++-..-... ....---..+++.+++.|+|||+|++...++
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp  271 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP  271 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence            579999987421100 0001122579999999999999998875544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.55  E-value=2.8e-06  Score=87.99  Aligned_cols=112  Identities=20%  Similarity=0.328  Sum_probs=88.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .+.+||||+||.|+++...+...   ..++...|.|+..|+..++...+.+......+..++.|..+....+.+   ..+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p---~P~  211 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDP---APT  211 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCC---CCC
Confidence            57899999999999988865432   368999999999999999999998887765555566666543333332   368


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +++.+..+.+ |.+..-....|+.+.++|.|||++|.|.
T Consensus       212 l~iVsGL~El-F~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSGLYEL-FPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEecchhh-CCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            8888865554 6777778889999999999999999987

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.55  E-value=6.9e-07  Score=88.30  Aligned_cols=117  Identities=16%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCCcee
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKALELD  368 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~sFD  368 (597)
                      ..+||||||.|.++..++... -..++|+|+....+..|.++....+..+..      ++..+    +...++  ++++|
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~------~~~~da~~~l~~~~~--~~~v~   90 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVR------FLRGDARELLRRLFP--PGSVD   90 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEE------EEES-CTTHHHHHST--TTSEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceE------EEEccHHHHHhhccc--CCchh
Confidence            489999999999999988653 468999999999999999988877665543      44443    222233  35799


Q ss_pred             EEEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        369 LVSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       369 vVi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      .|+.+|.=-|. ....     --..+|..+.++|+|||.|.+.|-+.+.....+..
T Consensus        91 ~i~i~FPDPWp-K~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~  145 (195)
T PF02390_consen   91 RIYINFPDPWP-KKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQ  145 (195)
T ss_dssp             EEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHH
T ss_pred             eEEEeCCCCCc-ccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Confidence            99998753331 1000     12579999999999999999999888766555443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.54  E-value=4.2e-07  Score=87.16  Aligned_cols=108  Identities=12%  Similarity=0.118  Sum_probs=72.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+ .+++|+|+++.+++.+++++....   +.     .+...|..+ ++....+||+|+
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~---~v-----~ii~~D~~~-~~~~~~~~d~vi   82 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAAD---NL-----TVIHGDALK-FDLPKLQPYKVV   82 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCC---CE-----EEEECchhc-CCccccCCCEEE
Confidence            56799999999999999998875 699999999999999998875421   11     133443322 222233599999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      ++..+|..   .+.+..++++.  .+.++|+|++..-..+.+.
T Consensus        83 ~n~Py~~~---~~~i~~~l~~~--~~~~~~~l~~q~e~a~rl~  120 (169)
T smart00650       83 GNLPYNIS---TPILFKLLEEP--PAFRDAVLMVQKEVARRLA  120 (169)
T ss_pred             ECCCcccH---HHHHHHHHhcC--CCcceEEEEEEHHHhHHhc
Confidence            98666432   23444444432  2458899988765444443

>KOG1499|consensus

Probab=98.52  E-value=4.1e-07  Score=96.05  Aligned_cols=105  Identities=15%  Similarity=0.219  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~~~~sFDvV  370 (597)
                      .++.|||+|||+|.++...+++|..+|+|+|.|..+ +.|.+....++.....+     .....+.+ .+|  .++.|+|
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~-----vi~gkvEdi~LP--~eKVDiI  131 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVIT-----VIKGKVEDIELP--VEKVDII  131 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEE-----EeecceEEEecC--ccceeEE
Confidence            579999999999999999999999999999988765 89998888877665432     22221111 344  3579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      ++-+.=+++ -.+.-+..+|-.=-+.|+|||.++=
T Consensus       132 vSEWMGy~L-l~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  132 VSEWMGYFL-LYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             eehhhhHHH-HHhhhhhhhhhhhhhccCCCceEcc
Confidence            997654333 1224455666666799999998854

>PRK03612 spermidine synthase; Provisional

Probab=98.51  E-value=3.1e-07  Score=103.41  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=74.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHH--HHhhhh---h-ccccccccceeehhhhccCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTR--YEELKR---K-EEARPYRRNVFSAELRSQYEDKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er--~~~~~~---~-~~~~~~~~d~F~~dl~e~l~~~~  364 (597)
                      ++.+|||||||+|..+..+++.+. .+++++|+++++++.|+++  +.....   . .+.     .+...|....+....
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv-----~vi~~Da~~~l~~~~  371 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRV-----TVVNDDAFNWLRKLA  371 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCce-----EEEEChHHHHHHhCC
Confidence            457899999999999998887653 7999999999999999983  322211   0 111     133334332222223


Q ss_pred             CceeEEEEccchhhhcc-CHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        365 LELDLVSCQFCIHYSFE-SVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFe-s~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++||+|++......... ..---..+++.++++|||||.+++...
T Consensus       372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            57999999754332100 000124689999999999999998654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.50  E-value=7.8e-07  Score=93.93  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=70.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++....+... ..     +...+..+......++||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~-v~-----~~~~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTN-VQ-----FQALDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eE-----EEEcCHHHHHHhcCCCCeEEE
Confidence            35789999999999999999877 599999999999999999987766532 21     344443222211224699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      +.-.-.-+      ...+++.+ ..++|++.+++++ ++..+...+.
T Consensus       246 ~dPPr~G~------~~~~~~~l-~~~~~~~ivyvsc-~p~t~~rd~~  284 (315)
T PRK03522        246 VNPPRRGI------GKELCDYL-SQMAPRFILYSSC-NAQTMAKDLA  284 (315)
T ss_pred             ECCCCCCc------cHHHHHHH-HHcCCCeEEEEEC-CcccchhHHh
Confidence            87331100      11222222 3367877666655 4444444343

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.50  E-value=4.9e-06  Score=88.27  Aligned_cols=82  Identities=16%  Similarity=0.090  Sum_probs=55.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhh-hhhcccccccccee-ehh---hhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVF-SAE---LRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F-~~d---l~e~l~~~~~  365 (597)
                      .+.+|||||||+|.....++.. ...+++|+|+++.+++.|++++... +...+..     +. ..+   +...+....+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~-----~~~~~~~~~i~~~i~~~~~  188 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR-----LRLQKDSKAIFKGIIHKNE  188 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE-----EEEccchhhhhhcccccCC
Confidence            5689999999999877665543 2358999999999999999998876 3433221     11 111   2222222345


Q ss_pred             ceeEEEEccchhh
Q psy17742        366 ELDLVSCQFCIHY  378 (597)
Q Consensus       366 sFDvVi~~~vLh~  378 (597)
                      +||+|+|+--+|-
T Consensus       189 ~fDlivcNPPf~~  201 (321)
T PRK11727        189 RFDATLCNPPFHA  201 (321)
T ss_pred             ceEEEEeCCCCcC
Confidence            7999999977654

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.49  E-value=1.3e-06  Score=88.29  Aligned_cols=97  Identities=22%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||+|.|.++..+++.. ..+++..|+ |..++.+++       ..+..     +...|+.+.+|.    +|+|
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~-----~~~gd~f~~~P~----~D~~  162 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVE-----FVPGDFFDPLPV----ADVY  162 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEE-----EEES-TTTCCSS----ESEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccc-----cccccHHhhhcc----ccce
Confidence            45789999999999999987653 358999999 788888887       11111     233333334442    9999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCC--cEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPG--GFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPG--G~fIit~  407 (597)
                      ++..+||..  +.++...+|+++++.|+||  |+|++.-
T Consensus       163 ~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  163 LLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            999999996  6688999999999999999  9998853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=1.1e-06  Score=89.35  Aligned_cols=115  Identities=18%  Similarity=0.287  Sum_probs=90.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ..++.+|||.|.|+|.++..++..  +..+|+..|+-++..+.|++++...+..+...     ....|..+.....  .|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~-----~~~~Dv~~~~~~~--~v  164 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT-----LKLGDVREGIDEE--DV  164 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE-----EEecccccccccc--cc
Confidence            348899999999999999998742  34699999999999999999998876554331     3334444433332  59


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhh
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRH  420 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~  420 (597)
                      |+|+.         +.+++..++..++++|||||.+++-.|..+.+.+.+...
T Consensus       165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l  208 (256)
T COG2519         165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEAL  208 (256)
T ss_pred             CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Confidence            98865         337888999999999999999999999998887766554

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.47  E-value=1.2e-06  Score=84.84  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHhhccc---CCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhh--hcc
Q psy17742        270 NWTKSMLIDEFLTRCKS---SQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKR--KEE  343 (597)
Q Consensus       270 nwvKs~LI~~~l~~l~~---~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~--~~~  343 (597)
                      -|--+.++..|+.....   .....++.+|||||||+|.....++.. +..+|+..|..+ .++.++.+...+..  ...
T Consensus        20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~   98 (173)
T PF10294_consen   20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR   98 (173)
T ss_dssp             ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred             EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence            35445555555544210   011235789999999999988888877 567999999999 88988888766541  111


Q ss_pred             ccccccceeeh--hhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        344 ARPYRRNVFSA--ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       344 ~~~~~~d~F~~--dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ..   ...+.-  +...... ...+||+|++..++..-    .....+++-+.++|+|+|.+++.....
T Consensus        99 v~---v~~L~Wg~~~~~~~~-~~~~~D~IlasDv~Y~~----~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen   99 VS---VRPLDWGDELDSDLL-EPHSFDVILASDVLYDE----ELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             -E---EEE--TTS-HHHHHH-S-SSBSEEEEES--S-G----GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             cc---CcEEEecCccccccc-ccccCCEEEEecccchH----HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            10   001111  0111111 12469999999998654    677889999999999999888876544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02672 methionine S-methyltransferase

Probab=98.43  E-value=1e-06  Score=105.69  Aligned_cols=113  Identities=14%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhh---------------ccccccccceeehhh
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRK---------------EEARPYRRNVFSAEL  356 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~---------------~~~~~~~~d~F~~dl  356 (597)
                      +.+|||||||+|..+..++... ..+|+|+|+|+.+++.|+++...+...               .+.     .++..|+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV-----~f~~sDl  193 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRV-----EFYESDL  193 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccE-----EEEECch
Confidence            4689999999999999988754 368999999999999999988754321               111     2445555


Q ss_pred             hccCCCCCCceeEEEEccc--------------hh-------h-------hc------cCHHHHHHHHHHHHHhccCCcE
Q psy17742        357 RSQYEDKALELDLVSCQFC--------------IH-------Y-------SF------ESVQQARCMLKNAAECLKPGGF  402 (597)
Q Consensus       357 ~e~l~~~~~sFDvVi~~~v--------------Lh-------~-------lF------es~~d~~~~L~~i~rlLKPGG~  402 (597)
                      ...+.....+||+|+++--              ..       |       ++      ....-.++++.++.++|+|||+
T Consensus       194 ~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~  273 (1082)
T PLN02672        194 LGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI  273 (1082)
T ss_pred             hhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence            4444332236999999622              00       0       00      0112247788899999999999


Q ss_pred             EEEEeCCh
Q psy17742        403 FVGTVPDS  410 (597)
Q Consensus       403 fIit~pn~  410 (597)
                      +++.+-..
T Consensus       274 l~lEiG~~  281 (1082)
T PLN02672        274 MIFNMGGR  281 (1082)
T ss_pred             EEEEECcc
Confidence            99988655

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.40  E-value=1.3e-06  Score=86.65  Aligned_cols=113  Identities=15%  Similarity=0.178  Sum_probs=71.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +...|-|+|||.+.++..+. .+ ..|...|+-...         +            .+..+|+ ...|.++++.|+++
T Consensus        72 ~~~viaD~GCGdA~la~~~~-~~-~~V~SfDLva~n---------~------------~Vtacdi-a~vPL~~~svDv~V  127 (219)
T PF05148_consen   72 KSLVIADFGCGDAKLAKAVP-NK-HKVHSFDLVAPN---------P------------RVTACDI-ANVPLEDESVDVAV  127 (219)
T ss_dssp             TTS-EEEES-TT-HHHHH---S----EEEEESS-SS---------T------------TEEES-T-TS-S--TT-EEEEE
T ss_pred             CCEEEEECCCchHHHHHhcc-cC-ceEEEeeccCCC---------C------------CEEEecC-ccCcCCCCceeEEE
Confidence            35789999999999996543 33 379999986420         0            0233333 44555667899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..+|..     .++..+|+++.|+|||||.|.+.-..+.                                        
T Consensus       128 fcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~SR----------------------------------------  162 (219)
T PF05148_consen  128 FCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVKSR----------------------------------------  162 (219)
T ss_dssp             EES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------------------
T ss_pred             EEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEeccc----------------------------------------
Confidence            9888855     4889999999999999999998643221                                        


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                                 +.+.+.|.+.++..||+++...
T Consensus       163 -----------f~~~~~F~~~~~~~GF~~~~~d  184 (219)
T PF05148_consen  163 -----------FENVKQFIKALKKLGFKLKSKD  184 (219)
T ss_dssp             ------------S-HHHHHHHHHCTTEEEEEEE
T ss_pred             -----------CcCHHHHHHHHHHCCCeEEecc
Confidence                       1245778899999999999754

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.39  E-value=3.1e-06  Score=83.19  Aligned_cols=109  Identities=15%  Similarity=0.053  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sFD  368 (597)
                      .+.+|||++||+|.+...++..|..+|+++|+++.+++.++++....+...+..     ++..|....   +......||
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~-----~~~~D~~~~l~~~~~~~~~~d  123 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAE-----VVRNSALRALKFLAKKPTFDN  123 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEE-----EEehhHHHHHHHhhccCCCce
Confidence            468899999999999999999987799999999999999999887765432221     344443222   211112478


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHH--HHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNA--AECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i--~rlLKPGG~fIit~pn~  410 (597)
                      +|+.---+..     .....++..+  ..+|++||.+++.....
T Consensus       124 vv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~~  162 (189)
T TIGR00095       124 VIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDRE  162 (189)
T ss_pred             EEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence            8877433321     1122333333  35799999999987654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.36  E-value=1.3e-06  Score=91.18  Aligned_cols=112  Identities=19%  Similarity=0.294  Sum_probs=72.5

Q ss_pred             CCEEEEECCCCChh--H--HHHHhc-----CCCEEEEEeCChHHHHHHHHH-HHhhhhhccc----cccc----------
Q psy17742        293 PIKVLDMGSGKGGD--M--LKWING-----GVKHVVFADIASVSIEDCKTR-YEELKRKEEA----RPYR----------  348 (597)
Q Consensus       293 ~~rVLDLGCGtG~~--l--~~la~~-----g~~~V~GIDiS~~mIe~A~er-~~~~~~~~~~----~~~~----------  348 (597)
                      ..+|+..||++|.-  +  ..+.+.     ...+|+|+|||+.+|+.|++- |.........    ..++          
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            48999999999982  2  223332     123799999999999999873 2111100000    0000          


Q ss_pred             ---------cceee-hhhhc-cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        349 ---------RNVFS-AELRS-QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       349 ---------~d~F~-~dl~e-~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                               ...|. .++.. .++. .+.||+|+|.+++.|+  +.+...++++++++.|+|||+|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                     00111 12332 2222 3579999999999986  56788999999999999999987753

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.36  E-value=2.4e-05  Score=83.03  Aligned_cols=189  Identities=10%  Similarity=-0.017  Sum_probs=107.8

Q ss_pred             CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHHHhhh-hhccccccccceeehhhhccCCC--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRYEELK-RKEEARPYRRNVFSAELRSQYED--K  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~~~~~-~~~~~~~~~~d~F~~dl~e~l~~--~  363 (597)
                      ++..|+|+|||.|.-+..+++    .+ ...|+++|||..+|+.+.+++.... .......+.+++...  ...++.  .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~--l~~l~~~~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG--LAWLKRPEN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH--Hhhcccccc
Confidence            456899999999986554433    22 3479999999999999999887222 111111111222211  111211  1


Q ss_pred             CCceeEEEEcc-chhhhccCHHHHHHHHHHHHH-hccCCcEEEEEeCCh---hHHHHHH---------------hhh---
Q psy17742        364 ALELDLVSCQF-CIHYSFESVQQARCMLKNAAE-CLKPGGFFVGTVPDS---NQIMARY---------------RRH---  420 (597)
Q Consensus       364 ~~sFDvVi~~~-vLh~lFes~~d~~~~L~~i~r-lLKPGG~fIit~pn~---~~i~~~l---------------~~~---  420 (597)
                      .....+|+..+ +|..+  +......+|+++++ .|+|||.|++.+--.   ..+...+               ...   
T Consensus       154 ~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~  231 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEI  231 (319)
T ss_pred             cCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Confidence            12356776655 57775  45678899999999 999999998865322   2222221               111   


Q ss_pred             -ccCccC--CceEEEEecCCCC---------CCCCCcccceeeecccccc-ccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        421 -QSASFG--NDVYQVQCLFDTS---------RPPPLFGAKYDFNLEGVVN-CPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       421 -~~~~fg--N~vy~I~F~~~~~---------d~~p~fG~~Y~F~L~d~Vn-~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                       ....|.  +.-+...|+....         .....-+..+.|.-.+.|. -.-|-++.+.+..+++.+||+++...
T Consensus       232 Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE~I~te~S~Kyt~~~~~~l~~~aG~~~~~~W  308 (319)
T TIGR03439       232 LGSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVW  308 (319)
T ss_pred             hCccccCHHHcEEEEEEcCCCCeEEEEEEeCCcEEEcCceEEEcCCCEEEEEeeeCCCHHHHHHHHHHCCCeeeEEE
Confidence             111121  1112223332110         0001113345555445553 23578999999999999999998754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.35  E-value=5.5e-06  Score=91.06  Aligned_cols=112  Identities=17%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sFD  368 (597)
                      ++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++++...+..+..      ++..+..+.   +.....+||
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~------~~~~d~~~~l~~~~~~~~~~D  364 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVE------FLAGTLETVLPKQPWAGQIPD  364 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceE------EEeCCHHHHHHHHHhcCCCCC
Confidence            45799999999999999988765 58999999999999999988766543211      444443222   222234699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      +|++.-.--      .-...+++.+.+ |+|+|.+++++ ++..+...+.
T Consensus       365 ~vi~dPPr~------G~~~~~l~~l~~-l~~~~ivyvsc-~p~tlard~~  406 (431)
T TIGR00479       365 VLLLDPPRK------GCAAEVLRTIIE-LKPERIVYVSC-NPATLARDLE  406 (431)
T ss_pred             EEEECcCCC------CCCHHHHHHHHh-cCCCEEEEEcC-CHHHHHHHHH
Confidence            998753210      112345555543 88988777754 4555544443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.34  E-value=4.6e-06  Score=83.20  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh---ccCCC--CC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR---SQYED--KA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~---e~l~~--~~  364 (597)
                      +..+||+||||+|.-+..++..-  ..+|+.+|+++...+.|++.+...+...+..     +...+..   ..+..  ..
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~-----~~~gda~~~l~~l~~~~~~  119 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIE-----VIEGDALEVLPELANDGEE  119 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEE-----EEES-HHHHHHHHHHTTTT
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEE-----EEEeccHhhHHHHHhccCC
Confidence            45799999999999999988641  3599999999999999999998877654432     3333211   11211  12


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++||+|+.-..       ..+....+..+.++|+|||.+++.-
T Consensus       120 ~~fD~VFiDa~-------K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  120 GQFDFVFIDAD-------KRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             TSEEEEEEEST-------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             CceeEEEEccc-------ccchhhHHHHHhhhccCCeEEEEcc
Confidence            57999987532       2455678888889999999999963

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=98.34  E-value=1.6e-06  Score=88.07  Aligned_cols=97  Identities=14%  Similarity=0.129  Sum_probs=66.3

Q ss_pred             CCEEEEECCCCChhHHHHHhc----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        293 PIKVLDMGSGKGGDMLKWING----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      +.+|||+|||+|.++..+++.    ....|+|+|+++.+++.|+++....           .+...|+... .. .++||
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~-----------~~~~~D~~~~-~~-~~~FD  116 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEA-----------TWINADALTT-EF-DTLFD  116 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCC-----------EEEEcchhcc-cc-cCCcc
Confidence            579999999999999887653    2348999999999999999775321           1344443221 12 24799


Q ss_pred             EEEEccchhhhc--------cCHHHHHHHHHHHHHhccCCcE
Q psy17742        369 LVSCQFCIHYSF--------ESVQQARCMLKNAAECLKPGGF  402 (597)
Q Consensus       369 vVi~~~vLh~lF--------es~~d~~~~L~~i~rlLKPGG~  402 (597)
                      +|+++--++-+-        ....-...++..+.+++++|+.
T Consensus       117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            999985543210        0112356688999997777775

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.30  E-value=4.2e-06  Score=81.96  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=75.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFD  368 (597)
                      .+.+||||-||+|......+..|+.+|+.||.++..+...++++...+......     .+..+...   .+.....+||
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~-----v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIR-----VIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEE-----EEESSHHHHHHHHHHCTS-EE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCccee-----eeccCHHHHHHhhcccCCCce
Confidence            578999999999999999999999999999999999999999998877665332     33333111   1211235799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn~  410 (597)
                      +|++---...-    .....++..+.  .+|+++|++++.....
T Consensus       117 iIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  117 IIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             EEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            99886444331    11366777776  8999999999988655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.28  E-value=2.6e-06  Score=86.25  Aligned_cols=97  Identities=20%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||+|||+|.++..+++.|..+|+|+|+++.|+....+...........  .+. .+..   +.+...-..+|+++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~--ni~-~~~~---~~~~~d~~~~Dvsf  148 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERT--NIR-YVTP---ADIFPDFATFDVSF  148 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecC--Ccc-cCCH---hHcCCCceeeeEEE
Confidence            56799999999999999999988889999999999887622211110000000  000 1111   11111223588776


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +...+            +|..+.++|+| |.+++-+
T Consensus       149 iS~~~------------~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       149 ISLIS------------ILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             eehHh------------HHHHHHHHhCc-CeEEEEc
Confidence            65322            47788999999 7766544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.27  E-value=6.5e-06  Score=89.10  Aligned_cols=113  Identities=11%  Similarity=0.045  Sum_probs=75.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++....+... .     .++..+....+.....+||+|+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~-~-----~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDN-L-----SFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCc-E-----EEEECCHHHHHHhcCCCCCEEE
Confidence            35789999999999999988776 699999999999999999987765432 1     1444443322221123599998


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      +.-.--.      -...+++.+. .++|++.++++. ++..+.+.+..
T Consensus       306 ~DPPr~G------~~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~~  345 (374)
T TIGR02085       306 VNPPRRG------IGKELCDYLS-QMAPKFILYSSC-NAQTMAKDIAE  345 (374)
T ss_pred             ECCCCCC------CcHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHHH
Confidence            8633211      1234455554 479988888776 56566555554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.27  E-value=4.5e-06  Score=90.58  Aligned_cols=115  Identities=19%  Similarity=0.234  Sum_probs=85.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFD  368 (597)
                      .+++|||+-|=||+++...+..|..+|++||+|...|+.|++++.-++......    .++..|..+   .......+||
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~----~~i~~Dvf~~l~~~~~~g~~fD  292 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH----RFIVGDVFKWLRKAERRGEKFD  292 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce----eeehhhHHHHHHHHHhcCCccc
Confidence            378999999999999999999998899999999999999999998877643211    144444222   2223334899


Q ss_pred             EEEEc---cc--hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQ---FC--IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~---~v--Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +|++-   |+  =...|.-..+...++..+.++|+|||.+++++...
T Consensus       293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99982   11  00112334678899999999999999999987655

>PLN02476 O-methyltransferase

Probab=98.27  E-value=7.8e-06  Score=85.08  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-----CCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-----DKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-----~~~  364 (597)
                      ++.+|||||+|+|..+..++..  ...+|+++|.+++.++.|++.+...+...+..     +...+..+.++     ...
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~-----li~GdA~e~L~~l~~~~~~  192 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN-----VKHGLAAESLKSMIQNGEG  192 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHHHHhcccC
Confidence            4689999999999999987763  12479999999999999999998887654332     33333222111     112


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++||+|+.-.       ...+...+++.+.++|+|||.+++.
T Consensus       193 ~~FD~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        193 SSYDFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCCEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            5799998753       2356778899999999999999985

>KOG2904|consensus

Probab=98.26  E-value=1.2e-05  Score=82.46  Aligned_cols=113  Identities=21%  Similarity=0.256  Sum_probs=79.1

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +..|||+|||+|..+..++.. +-..|+++|.|+.++..|.++....+.......+ ......+.....+...+++|+++
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~-~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI-HNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE-ecccccccccccccccCceeEEe
Confidence            468999999999999887653 3468999999999999999998877665543100 00112222333334457899999


Q ss_pred             Eccchhhhc------------------------cCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSF------------------------ESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lF------------------------es~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |+--  |++                        +....+..++.-+.|+|+|||.+.+.+.
T Consensus       228 sNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  228 SNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             cCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            9732  111                        2224456778888999999999999876

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.26  E-value=6.8e-05  Score=77.73  Aligned_cols=197  Identities=16%  Similarity=0.160  Sum_probs=112.1

Q ss_pred             hhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc
Q psy17742        234 QEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING  313 (597)
Q Consensus       234 ~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~  313 (597)
                      .+..+.+.++..+.+....+..+|.        ....+|.+.|-..+.    .......+.+||=-|||.|+++..++..
T Consensus        10 d~~kV~s~L~q~~RDWS~eg~~ER~--------~~~~~I~~~L~~~~p----~~~~~~~~~~VLVPGsGLGRLa~Eia~~   77 (270)
T PF07942_consen   10 DMDKVRSTLKQFVRDWSSEGEEERD--------PCYSPILDELESLFP----PAGSDRSKIRVLVPGSGLGRLAWEIAKL   77 (270)
T ss_pred             hHHHHHHHHHHHHhhCchhhHHHHH--------HHHHHHHHHHHHhhc----ccccCCCccEEEEcCCCcchHHHHHhhc
Confidence            3445556666666555444444443        112333333333222    1111224689999999999999999999


Q ss_pred             CCCEEEEEeCChHHHHHHHHHHHhhhhhccc--------------------cccccc-----------eee---hhhhcc
Q psy17742        314 GVKHVVFADIASVSIEDCKTRYEELKRKEEA--------------------RPYRRN-----------VFS---AELRSQ  359 (597)
Q Consensus       314 g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~--------------------~~~~~d-----------~F~---~dl~e~  359 (597)
                      |+ .+.|.|.|--|+-...--+.........                    ...+.|           .|.   .|..+.
T Consensus        78 G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~  156 (270)
T PF07942_consen   78 GY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEV  156 (270)
T ss_pred             cc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEe
Confidence            97 8999999999976544332210000000                    000000           000   011112


Q ss_pred             CCCC--CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCC
Q psy17742        360 YEDK--ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFD  437 (597)
Q Consensus       360 l~~~--~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~  437 (597)
                      ....  .++||+|+..|-+    .+..++...|+.|.++|||||++|=.-|-              .|+..       . 
T Consensus       157 y~~~~~~~~~d~VvT~FFI----DTA~Ni~~Yi~tI~~lLkpgG~WIN~GPL--------------lyh~~-------~-  210 (270)
T PF07942_consen  157 YGPDENKGSFDVVVTCFFI----DTAENIIEYIETIEHLLKPGGYWINFGPL--------------LYHFE-------P-  210 (270)
T ss_pred             cCCcccCCcccEEEEEEEe----echHHHHHHHHHHHHHhccCCEEEecCCc--------------cccCC-------C-
Confidence            2222  3689999888766    44488999999999999999966532110              01100       0 


Q ss_pred             CCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        438 TSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       438 ~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                             .+....    .++.     .+.++|..+++..||+++....
T Consensus       211 -------~~~~~~----~sve-----Ls~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  211 -------MSIPNE----MSVE-----LSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             -------CCCCCC----cccC-----CCHHHHHHHHHHCCCEEEEEEE
Confidence                   000000    0122     6789999999999999997654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.26  E-value=5e-06  Score=86.09  Aligned_cols=112  Identities=18%  Similarity=0.260  Sum_probs=72.6

Q ss_pred             CCCEEEEECCCCCh--hH--HHHHhcC------CCEEEEEeCChHHHHHHHHH-HHhhhh------hcc-c--ccccc--
Q psy17742        292 SPIKVLDMGSGKGG--DM--LKWINGG------VKHVVFADIASVSIEDCKTR-YEELKR------KEE-A--RPYRR--  349 (597)
Q Consensus       292 ~~~rVLDLGCGtG~--~l--~~la~~g------~~~V~GIDiS~~mIe~A~er-~~~~~~------~~~-~--~~~~~--  349 (597)
                      ...+|+-+||++|.  ++  ..+.+..      .-+|+|+|||..+|+.|+.- |.....      ... .  .....  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            46899999999997  22  2222222      24899999999999999862 220100      000 0  00000  


Q ss_pred             c----------eee-hhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        350 N----------VFS-AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       350 d----------~F~-~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .          .|. .++....+ ..+.||+|+|..+|-|+  +.+...++++.++..|+|||+|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            0          111 11222221 23569999999999997  6678889999999999999999884

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.24  E-value=7.1e-06  Score=85.71  Aligned_cols=113  Identities=23%  Similarity=0.270  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCC--CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYE--DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~--~~~~sFD  368 (597)
                      .+++|||+-|=+|+++...+..|..+|++||.|..+++.|++++.-++... ...     +...|..+.+.  ...++||
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~-----~~~~Dvf~~l~~~~~~~~fD  197 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR-----FIQGDVFKFLKRLKKGGRFD  197 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE-----EEES-HHHHHHHHHHTT-EE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE-----EEecCHHHHHHHHhcCCCCC
Confidence            468999999999999999888888899999999999999999988776542 221     33333221111  1235799


Q ss_pred             EEEEc---cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQ---FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~---~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +|++-   |+= --|.-..+...++..+.++|+|||.|++++-+.
T Consensus       198 ~IIlDPPsF~k-~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  198 LIILDPPSFAK-SKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             EEEE--SSEES-STCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             EEEECCCCCCC-CHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            99982   210 011113577889999999999999998877554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=3.5e-06  Score=82.40  Aligned_cols=74  Identities=23%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||+|||||.++...+-.|...|+|+|+++++++.|+++..+.....       .++..|+.. +   .+.||.|+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v-------~f~~~dv~~-~---~~~~dtvi  113 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDV-------EFVVADVSD-F---RGKFDTVI  113 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCce-------EEEEcchhh-c---CCccceEE
Confidence            567899999999999999888898899999999999999999987733221       144443322 2   35699998


Q ss_pred             Eccch
Q psy17742        372 CQFCI  376 (597)
Q Consensus       372 ~~~vL  376 (597)
                      ++--+
T Consensus       114 mNPPF  118 (198)
T COG2263         114 MNPPF  118 (198)
T ss_pred             ECCCC
Confidence            87544

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.22  E-value=1.5e-05  Score=79.71  Aligned_cols=123  Identities=18%  Similarity=0.294  Sum_probs=88.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh-hccCC-CCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL-RSQYE-DKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl-~e~l~-~~~~sFDv  369 (597)
                      ...++|||||=+......  ..+.-.|+.||+.+.-          .+           +...|. ..++| ...++||+
T Consensus        51 ~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~----------~~-----------I~qqDFm~rplp~~~~e~Fdv  107 (219)
T PF11968_consen   51 PKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH----------PG-----------ILQQDFMERPLPKNESEKFDV  107 (219)
T ss_pred             ccceEEeecccCCCCccc--ccCceeeEEeecCCCC----------CC-----------ceeeccccCCCCCCcccceeE
Confidence            347999999886554432  2343469999998631          11           233331 12343 23468999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcE-----EEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGF-----FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPL  444 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~-----fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~  444 (597)
                      |+|+.+|.|+ .+....-.+++.+++.|+|+|.     |++..|.+..-             |+                
T Consensus       108 Is~SLVLNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~-------------NS----------------  157 (219)
T PF11968_consen  108 ISLSLVLNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVT-------------NS----------------  157 (219)
T ss_pred             EEEEEEEeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhh-------------cc----------------
Confidence            9999999998 6777888999999999999999     99988887521             11                


Q ss_pred             cccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        445 FGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       445 fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                                       .+.+.+.|.++++..||..+..+
T Consensus       158 -----------------Ry~~~~~l~~im~~LGf~~~~~~  180 (219)
T PF11968_consen  158 -----------------RYMTEERLREIMESLGFTRVKYK  180 (219)
T ss_pred             -----------------cccCHHHHHHHHHhCCcEEEEEE
Confidence                             12566889999999999999865

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.22  E-value=3.7e-06  Score=86.13  Aligned_cols=117  Identities=17%  Similarity=0.251  Sum_probs=84.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCC-CCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYED-KALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~-~~~s  366 (597)
                      .+|.+|||.|.|+|.++..++..  ...+|+..|+.++.++.|++++...+......     +...|+. ..+.. ....
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~-----~~~~Dv~~~g~~~~~~~~  113 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVT-----VHHRDVCEEGFDEELESD  113 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEE-----EEES-GGCG--STT-TTS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCce-----eEecceecccccccccCc
Confidence            48999999999999999988753  23599999999999999999999887754332     2333322 22311 1246


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhc-cCCcEEEEEeCChhHHHHHHhhhc
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECL-KPGGFFVGTVPDSNQIMARYRRHQ  421 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlL-KPGG~fIit~pn~~~i~~~l~~~~  421 (597)
                      ||.|+.-         .+++..++..+.++| ||||+|++-.|+.+.+...+....
T Consensus       114 ~DavfLD---------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~  160 (247)
T PF08704_consen  114 FDAVFLD---------LPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR  160 (247)
T ss_dssp             EEEEEEE---------SSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ccEEEEe---------CCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence            9998653         266778999999999 999999999999988887666543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.20  E-value=1e-05  Score=81.90  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=85.6

Q ss_pred             CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCceeE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELDL  369 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFDv  369 (597)
                      ..+||||||.|.++..++... -..++|||+....+..|.++....+..+..      +++.|   +...+.. .++.|-
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlr------i~~~DA~~~l~~~~~-~~sl~~  122 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLR------LLCGDAVEVLDYLIP-DGSLDK  122 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEE------EEcCCHHHHHHhcCC-CCCeeE
Confidence            579999999999999988765 357999999999999999998888773221      44443   3333433 357999


Q ss_pred             EEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        370 VSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       370 Vi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      |..+|.=-|. ....     -...+|+.+.+.|+|||.|.+.|-+.+....
T Consensus       123 I~i~FPDPWp-KkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         123 IYINFPDPWP-KKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             EEEECCCCCC-CccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            9998764332 1111     1257999999999999999999998877666

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.18  E-value=1.4e-05  Score=80.45  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-hhhhccCC-CCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-AELRSQYE-DKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-~dl~e~l~-~~~~sF  367 (597)
                      ++++||+||.+.|.-+..++..-  ..+++.+|+++++++.|++++.+.+...+..     .+. .+..+.+. ...++|
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~-----~~~~gdal~~l~~~~~~~f  133 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIE-----LLLGGDALDVLSRLLDGSF  133 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEE-----EEecCcHHHHHHhccCCCc
Confidence            56899999999999888876542  3589999999999999999999988776532     222 23222222 234679


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+.-.       ...+...+|..+.++|+|||.+++.
T Consensus       134 DliFIDa-------dK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         134 DLVFIDA-------DKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             cEEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            9998753       3356678999999999999999985

>KOG1269|consensus

Probab=98.15  E-value=7.8e-06  Score=88.07  Aligned_cols=153  Identities=18%  Similarity=0.107  Sum_probs=103.1

Q ss_pred             hhHHHHHHHhccccccchhhccc-----hhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742        238 LGQTVAEHYNQKKNVGTELRKNS-----RIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN  312 (597)
Q Consensus       238 ~~~~Va~hYn~~~~~~~~~R~~S-----~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~  312 (597)
                      ..+.++..||.....+...+..+     .+....+.-.|++...+..+...      ..++..+||+|||-|+.......
T Consensus        57 ~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~g~~~~~~~i~~  130 (364)
T KOG1269|consen   57 LPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRES------CFPGSKVLDVGTGVGGPSRYIAV  130 (364)
T ss_pred             cchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhc------CcccccccccCcCcCchhHHHHH
Confidence            44567777776543333222111     12222222246555444444332      22556899999999999998887


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHH
Q psy17742        313 GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKN  392 (597)
Q Consensus       313 ~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~  392 (597)
                      .+...++|+|.++..+..+..............     +...+... -+..+..||.+.+..+..|+    ++...++++
T Consensus       131 f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~-----~~~~~~~~-~~fedn~fd~v~~ld~~~~~----~~~~~~y~E  200 (364)
T KOG1269|consen  131 FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCN-----FVVADFGK-MPFEDNTFDGVRFLEVVCHA----PDLEKVYAE  200 (364)
T ss_pred             hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcc-----eehhhhhc-CCCCccccCcEEEEeecccC----CcHHHHHHH
Confidence            776799999999999988888766666555442     22222222 22334579999999999998    899999999


Q ss_pred             HHHhccCCcEEEEE
Q psy17742        393 AAECLKPGGFFVGT  406 (597)
Q Consensus       393 i~rlLKPGG~fIit  406 (597)
                      ++++|+|||+++.-
T Consensus       201 i~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  201 IYRVLKPGGLFIVK  214 (364)
T ss_pred             HhcccCCCceEEeH
Confidence            99999999999874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.12  E-value=1.9e-06  Score=94.76  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=69.8

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEE--EEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVV--FADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~--GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      -.+||+|||.|.++..++..++..+.  --|..+..++.|.+|.-..            .+..-..+.||.+++.||+|.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa------------~~~~~~s~rLPfp~~~fDmvH  186 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA------------MIGVLGSQRLPFPSNAFDMVH  186 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch------------hhhhhccccccCCccchhhhh
Confidence            46899999999999999998852211  1255556677776653111            111111345777778899999


Q ss_pred             Eccch-hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCI-HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vL-h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |..++ .+.    ..-..+|-++.|+|+|||+|+.+.|-.
T Consensus       187 csrc~i~W~----~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  187 CSRCLIPWH----PNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             cccccccch----hcccceeehhhhhhccCceEEecCCcc
Confidence            99884 443    222468999999999999999998754

; GO: 0008168 methyltransferase activity

>KOG3045|consensus

Probab=98.12  E-value=1.2e-05  Score=81.91  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=62.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ....|-|+|||.+.++.   .. ...|..+|+-..-            .         ++...|+.. +|..+++.|+++
T Consensus       180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~~------------~---------~V~~cDm~~-vPl~d~svDvaV  233 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAVN------------E---------RVIACDMRN-VPLEDESVDVAV  233 (325)
T ss_pred             CceEEEecccchhhhhh---cc-ccceeeeeeecCC------------C---------ceeeccccC-CcCccCcccEEE
Confidence            46789999999998876   22 2478889985420            0         133344333 566667899998


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +..+|.-     .++..++++++|+|+|||.+++.-.
T Consensus       234 ~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  234 FCLSLMG-----TNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             eeHhhhc-----ccHHHHHHHHHHHhccCceEEEEeh
Confidence            8777644     5889999999999999999998643

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.10  E-value=1.5e-05  Score=76.93  Aligned_cols=107  Identities=28%  Similarity=0.374  Sum_probs=62.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~  365 (597)
                      .+.+||||||++|+++..++..+  ...|+|+|+.+..         ....   .....++.+...    +...+....+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~~~---~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PLQN---VSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S-TT---EEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cccc---eeeeecccchhhHHHhhhhhcccccc
Confidence            45899999999999999998887  5699999998761         0000   011112233221    2222322235


Q ss_pred             ceeEEEEccchhhh-------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        366 ELDLVSCQFCIHYS-------FESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       366 sFDvVi~~~vLh~l-------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +||+|+|-.+....       +.+..-....|.-+...|+|||.|++.+...
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            79999997632111       0111334455666668899999999987654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.09  E-value=1.6e-05  Score=84.52  Aligned_cols=110  Identities=24%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +|..|||==||||+++....-.|. +++|+|++..|+.-|+.++...+.....      .........++.+..+||.|+
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~------~~~~~Da~~lpl~~~~vdaIa  269 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYP------VLKVLDATNLPLRDNSVDAIA  269 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCcee------EEEecccccCCCCCCccceEE
Confidence            678999999999999999888885 9999999999999999998877643321      122212234444444699999


Q ss_pred             Eccchhhh----ccC-HHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYS----FES-VQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~l----Fes-~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +---..-.    -.. .+-...+|+.++++||+||++++..|
T Consensus       270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            84221110    000 23468899999999999999999988

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.08  E-value=3.4e-05  Score=66.40  Aligned_cols=104  Identities=23%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             EEEECCCCChhH--HHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCCCCC-CceeEEE
Q psy17742        296 VLDMGSGKGGDM--LKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKA-LELDLVS  371 (597)
Q Consensus       296 VLDLGCGtG~~l--~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~~~-~sFDvVi  371 (597)
                      +||+|||+|...  ..+...+ ..++|+|+++.++..++..... ......     .....+... .++... ..||++.
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRG-AYVVGVDLSPEMLALARARAEG-AGLGLV-----DFVVADALGGVLPFEDSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCC-ceEEEEeCCHHHHHHHHhhhhh-cCCCce-----EEEEeccccCCCCCCCCCceeEEe
Confidence            999999999965  2222222 3799999999999985554432 111000     122222222 133333 3699994


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +...+++.    . ....+.++.+.|+|+|.+++......
T Consensus       125 ~~~~~~~~----~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         125 SLLVLHLL----P-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeehhcC----C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            44444443    2 78899999999999999999887653

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.05  E-value=2.1e-05  Score=87.18  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      +..|||||||+|.++...++++     ..+|++|+-++.++...+++....+...+.+     ++..++. .+..+ .++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~-----vi~~d~r-~v~lp-ekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVT-----VIHGDMR-EVELP-EKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEE-----EEES-TT-TSCHS-S-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEE-----EEeCccc-CCCCC-Cce
Confidence            5789999999999998776664     4699999999999988877755555543332     4555433 33333 379


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      |+|++=.. .. |...+-....|..+.+.|||||.+|
T Consensus       260 DIIVSElL-Gs-fg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  260 DIIVSELL-GS-FGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eEEEEecc-CC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence            99998432 11 2222344567889999999999885

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02823 spermine synthase

Probab=98.03  E-value=2e-05  Score=84.14  Aligned_cols=111  Identities=19%  Similarity=0.341  Sum_probs=72.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhh---hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKR---KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~---~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+||.||+|.|..+..+++. +..+++.+|+++.+++.|++.+.....   ..+.     .+...|....+....++|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv-----~v~~~Da~~~L~~~~~~y  177 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRL-----ELIINDARAELEKRDEKF  177 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCce-----EEEEChhHHHHhhCCCCc
Confidence            3578999999999999987775 467899999999999999988653221   1111     133333223333334579


Q ss_pred             eEEEEccchhhhccCHH--HHHHHHH-HHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQ--QARCMLK-NAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~--d~~~~L~-~i~rlLKPGG~fIit~  407 (597)
                      |+|++-..=...-....  --..+++ .+.++|+|||+|++..
T Consensus       178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            99998521100000000  1236787 8999999999998764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.03  E-value=4.2e-05  Score=83.16  Aligned_cols=106  Identities=24%  Similarity=0.303  Sum_probs=76.7

Q ss_pred             CCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||++||+|..+..++. .+..+|+++|+++.+++.++++...++.....      ++..|....+.. .++||+|+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~------v~~~Da~~~l~~-~~~fD~V~  130 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEK------VFNKDANALLHE-ERKFDVVD  130 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceE------EEhhhHHHHHhh-cCCCCEEE
Confidence            36899999999999999865 45568999999999999999988766543221      444443322221 24699998


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      +.- .       .....++..+.+.+++||+++++..+...+
T Consensus       131 lDP-~-------Gs~~~~l~~al~~~~~~gilyvSAtD~~~L  164 (382)
T PRK04338        131 IDP-F-------GSPAPFLDSAIRSVKRGGLLCVTATDTAPL  164 (382)
T ss_pred             ECC-C-------CCcHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence            852 2       123467888778899999999997666554

>KOG3178|consensus

Probab=97.98  E-value=2e-05  Score=83.60  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .-...+|+|.|.|..+..+.. .+.++-|+++....|..+...+. .+..         .+..+..+..|.    -|+|+
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV~---------~v~gdmfq~~P~----~daI~  241 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PGVE---------HVAGDMFQDTPK----GDAIW  241 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CCcc---------eecccccccCCC----cCeEE
Confidence            347899999999999999887 55689999999999888887764 3322         222222233543    57999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++++|||.  +.++..++|++|++.|+|||.+++.-.
T Consensus       242 mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  242 MKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             EEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            99999998  778999999999999999999988644

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.95  E-value=7.6e-05  Score=76.57  Aligned_cols=103  Identities=12%  Similarity=0.010  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCC---C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYED---K  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~---~  363 (597)
                      +..+||+||+++|.-+..++..-  ..+|+.+|+++...+.|++.+...+...+..     +...+..+   .+..   .
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~-----~~~G~a~e~L~~l~~~~~~  153 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKID-----FREGPALPVLDQMIEDGKY  153 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceE-----EEeccHHHHHHHHHhcccc
Confidence            45789999999999888776531  3589999999999999999998877654432     22222111   1111   1


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .++||+|+.-..       .......+..+.++|+|||.+++.
T Consensus       154 ~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        154 HGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             CCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            257999987532       345667888889999999999884

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.93  E-value=5.8e-05  Score=81.83  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=77.8

Q ss_pred             CCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +.+|||+.||+|..++.++..  |..+|+++|+++.+++.++++...++.....      ++..|....+.....+||+|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~------v~~~Da~~~l~~~~~~fDvI  118 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIE------VPNEDAANVLRYRNRKFHVI  118 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE------EEchhHHHHHHHhCCCCCEE
Confidence            368999999999999998876  6789999999999999999998766543211      44444332222222469999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~  412 (597)
                      ..-- +       ..+..++..+.+.+++||++.+|..|...
T Consensus       119 dlDP-f-------Gs~~~fld~al~~~~~~glL~vTaTD~~~  152 (374)
T TIGR00308       119 DIDP-F-------GTPAPFVDSAIQASAERGLLLVTATDTSA  152 (374)
T ss_pred             EeCC-C-------CCcHHHHHHHHHhcccCCEEEEEecccHH
Confidence            7743 3       22346899999999999999999655543

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.90  E-value=6.4e-05  Score=84.57  Aligned_cols=118  Identities=14%  Similarity=0.083  Sum_probs=84.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sF  367 (597)
                      .+..+||||||.|.++..++... -..++|+|+....+..|.++....+..+..      ++..+   +...++.  +++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~------~~~~~~~~~~~~~~~--~sv  418 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFL------LFPNNLDLILNDLPN--NSL  418 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEE------EEcCCHHHHHHhcCc--ccc
Confidence            45789999999999999988764 357999999999999888877665544321      22222   2233443  569


Q ss_pred             eEEEEccchhhhcc--CHH---HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        368 DLVSCQFCIHYSFE--SVQ---QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       368 DvVi~~~vLh~lFe--s~~---d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      |.|+.+|.=-|. .  |..   --..+|+.+.++|||||.|.+.+-+.+.....+.
T Consensus       419 ~~i~i~FPDPWp-Kkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~  473 (506)
T PRK01544        419 DGIYILFPDPWI-KNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIE  473 (506)
T ss_pred             cEEEEECCCCCC-CCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence            999998764331 0  001   1257999999999999999999988876655443

>PRK04148 hypothetical protein; Provisional

Probab=97.87  E-value=8.5e-05  Score=69.34  Aligned_cols=98  Identities=14%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             CCCEEEEECCCCCh-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||.|. .+..|.+.|. .|+|+|+++..++.|+++...        ....|.|..++     .--+.+|+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~--------~v~dDlf~p~~-----~~y~~a~li   81 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLN--------AFVDDLFNPNL-----EIYKNAKLI   81 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCe--------EEECcCCCCCH-----HHHhcCCEE
Confidence            45789999999997 7777888785 999999999999988776311        11123343321     112348999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~  412 (597)
                      .+...       ..++...+.++++.+  |.-+++.....+.
T Consensus        82 ysirp-------p~el~~~~~~la~~~--~~~~~i~~l~~e~  114 (134)
T PRK04148         82 YSIRP-------PRDLQPFILELAKKI--NVPLIIKPLSGEE  114 (134)
T ss_pred             EEeCC-------CHHHHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence            88643       255666666666654  4556666555543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.85  E-value=7.2e-05  Score=74.40  Aligned_cols=98  Identities=24%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++..|||+.||-|.++..+++ .....|+++|++|.+++.++++...++......     .+..|....++  .+.||-|
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~-----~~~~D~~~~~~--~~~~drv  173 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIE-----VINGDAREFLP--EGKFDRV  173 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEE-----EEES-GGG-----TT-EEEE
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEE-----EEcCCHHHhcC--ccccCEE
Confidence            578999999999999999887 234689999999999999999988877664331     44555443333  4679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      ++...-        ....+|..+.+++++||++-
T Consensus       174 im~lp~--------~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  174 IMNLPE--------SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred             EECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence            987432        22357888999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.84  E-value=3.9e-05  Score=77.23  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=74.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehh---hhccCCCCCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAE---LRSQYEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~d---l~e~l~~~~~s  366 (597)
                      +.+.+|||.+.|-|..++..++.|..+|+-++.++..|+.|.-+-=..... ...     .++..|   +.+.+++  .+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i-----~iilGD~~e~V~~~~D--~s  205 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAI-----KIILGDAYEVVKDFDD--ES  205 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccccccc-----EEecccHHHHHhcCCc--cc
Confidence            368999999999999999999999779999999999999887531111110 001     122222   3455655  46


Q ss_pred             eeEEEEccc-hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        367 LDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       367 FDvVi~~~v-Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ||+|+---- |.+.  .+--...+.++++|+|||||.++-=+-+
T Consensus       206 fDaIiHDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~  247 (287)
T COG2521         206 FDAIIHDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGN  247 (287)
T ss_pred             cceEeeCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence            999976321 1111  1224578999999999999998764433

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.84  E-value=0.00012  Score=74.90  Aligned_cols=44  Identities=20%  Similarity=0.182  Sum_probs=39.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ++.+|||||||+|.++..++..+ ..|+++|+++.+++.+++++.
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhC
Confidence            56899999999999999999887 479999999999999988764

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1331|consensus

Probab=97.82  E-value=2.1e-05  Score=81.18  Aligned_cols=102  Identities=18%  Similarity=0.132  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+..+||+|||.|.++..-   ....++|.|++...+..|++.....            .+.+| ...++....+||.++
T Consensus        45 ~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~~~~~------------~~~ad-~l~~p~~~~s~d~~l  108 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRSGGDN------------VCRAD-ALKLPFREESFDAAL  108 (293)
T ss_pred             CcceeeecccCCcccCcCC---CcceeeecchhhhhccccccCCCce------------eehhh-hhcCCCCCCccccch
Confidence            3678999999999877522   2347899999999888887643220            22222 123444456799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..++||+ .+......+++++.+.|+|||..++.+...
T Consensus       109 siavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  109 SIAVIHHL-STRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             hhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            99999997 677888999999999999999988876544

>KOG3191|consensus

Probab=97.81  E-value=0.00024  Score=69.30  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             CCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ..-+||||||+|..+..+++.  +...+.++||++.+++...+.+..++...       +....|+...+..  ++.|++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~-------~~V~tdl~~~l~~--~~VDvL  114 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI-------DVVRTDLLSGLRN--ESVDVL  114 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc-------ceeehhHHhhhcc--CCccEE
Confidence            577999999999988887654  34578999999999998888766654432       2455565555654  568888


Q ss_pred             EEccch----------h-----hh--ccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        371 SCQFCI----------H-----YS--FESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       371 i~~~vL----------h-----~l--Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      +.+-..          +     |.  -...+-..+++..+-.+|.|.|+|++.....+...
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~  175 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK  175 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence            775211          1     11  01122367889999999999999998887664333

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.81  E-value=6.3e-05  Score=77.30  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++....   +.     .+...|.. .++.+  .||.|+
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~---~v-----~ii~~D~~-~~~~~--~~d~Vv   96 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAG---NV-----EIIEGDAL-KVDLP--EFNKVV   96 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCC---CE-----EEEEeccc-cCCch--hceEEE
Confidence            56899999999999999998886 589999999999999998875411   11     13333322 22332  489999


Q ss_pred             Eccchh
Q psy17742        372 CQFCIH  377 (597)
Q Consensus       372 ~~~vLh  377 (597)
                      ++...+
T Consensus        97 ~NlPy~  102 (258)
T PRK14896         97 SNLPYQ  102 (258)
T ss_pred             EcCCcc
Confidence            986653

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.81  E-value=4.9e-05  Score=77.81  Aligned_cols=113  Identities=17%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhh---ccccccccceeehhhhccCCCCCC-c
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRK---EEARPYRRNVFSAELRSQYEDKAL-E  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~---~~~~~~~~d~F~~dl~e~l~~~~~-s  366 (597)
                      .+.+||=||-|.|+.+..+++.. ..++++|||++.+++.|++.+......   .+.     .....|-...+..... +
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~-----~i~~~Dg~~~l~~~~~~~  150 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRV-----RIIIGDGRKFLKETQEEK  150 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTE-----EEEESTHHHHHHTSSST-
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCce-----EEEEhhhHHHHHhccCCc
Confidence            46899999999999999988765 679999999999999999977654322   111     1333332222222233 7


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ||+|+.-..-.......---..+++.++++|+|||+++....+
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence            9999873221000000001257999999999999999987633

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.81  E-value=0.00013  Score=81.26  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=76.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+|||+|||.|+=+..++..  +-..|+++|+++.-++.+++++...+..+..      ....|.........+.||
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~------v~~~D~~~~~~~~~~~fD  185 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVA------LTHFDGRVFGAALPETFD  185 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE------EEeCchhhhhhhchhhcC
Confidence            36789999999999988776653  2248999999999999999998887665421      233321111011124699


Q ss_pred             EEE----Eccc--hhhhcc-----CH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVS----CQFC--IHYSFE-----SV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi----~~~v--Lh~lFe-----s~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .|+    |+..  +..-.+     +.       .-...+|.++.++|||||++|-+|...
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            999    4422  211100     01       112789999999999999999887653

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.80  E-value=7.4e-05  Score=78.04  Aligned_cols=112  Identities=17%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      .+||-||.|.|+.++.+++.. ..+++.|||.+..|+.|++.+........ .+... ....|-.+.+.....+||+|++
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~-i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVE-IIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceE-EEeccHHHHHHhCCCcCCEEEE
Confidence            699999999999999988776 68999999999999999998776542211 00011 2222322333333347999998


Q ss_pred             ccchhhhccCHH--HHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        373 QFCIHYSFESVQ--QARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       373 ~~vLh~lFes~~--d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      -..=. . ..-+  --..+++.++++|+++|+++...-+
T Consensus       156 D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~  192 (282)
T COG0421         156 DSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS  192 (282)
T ss_pred             cCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            53221 0 0000  1257999999999999999998433

>KOG1500|consensus

Probab=97.79  E-value=0.00012  Score=76.90  Aligned_cols=106  Identities=18%  Similarity=0.154  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+..|||+|||.|.++...+.+|.++|++++.| +|.+.|++....+....+.      ....+-.+.+..+ ++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rI------tVI~GKiEdieLP-Ek~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRI------TVIPGKIEDIELP-EKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceE------EEccCccccccCc-hhccEEE
Confidence            578899999999999999999999999999965 6888998887766444332      1111222333333 4799998


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +- .+.|+.-++.-+ .-.-.+++.|||.|..+-|+
T Consensus       249 SE-PMG~mL~NERML-EsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  249 SE-PMGYMLVNERML-ESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             ec-cchhhhhhHHHH-HHHHHHHhhcCCCCcccCcc
Confidence            74 344543344333 33344569999999987665

>PRK00536 speE spermidine synthase; Provisional

Probab=97.78  E-value=0.00011  Score=76.00  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=72.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvV  370 (597)
                      .+.+||=||.|.|+.++.+++.. .+|+.|||++.+|+.+++.++....... .+......      .+.. ..++||+|
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~-DpRv~l~~------~~~~~~~~~fDVI  143 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKN-NKNFTHAK------QLLDLDIKKYDLI  143 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhc-CCCEEEee------hhhhccCCcCCEE
Confidence            46899999999999999999886 4999999999999999997766433211 11111111      1111 12579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++-...         ...+++.+++.|+|||.++...-++
T Consensus       144 IvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs~sp  174 (262)
T PRK00536        144 ICLQEP---------DIHKIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_pred             EEcCCC---------ChHHHHHHHHhcCCCcEEEECCCCc
Confidence            976321         1478899999999999999855333

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.77  E-value=0.00019  Score=74.36  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+++.|++.+++++.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc
Confidence            567999999999999999988875 99999999999999988764

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.76  E-value=0.00049  Score=67.65  Aligned_cols=97  Identities=23%  Similarity=0.244  Sum_probs=69.9

Q ss_pred             EEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        295 KVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      +|||||+|.|.....++-.. ..+++.+|....-+...+.-....+..+..      .+.....+  .....+||+|++.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~------v~~~R~E~--~~~~~~fd~v~aR  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVE------VINGRAEE--PEYRESFDVVTAR  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEE------EEES-HHH--TTTTT-EEEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEE------EEEeeecc--cccCCCccEEEee
Confidence            89999999998777765432 358999999999888888877777766432      33333333  2234679999998


Q ss_pred             cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      .+-        .+..++.-+..+|++||.+++--
T Consensus       123 Av~--------~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  123 AVA--------PLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             SSS--------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhc--------CHHHHHHHHHHhcCCCCEEEEEc
Confidence            543        44578899999999999988764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.73  E-value=0.00021  Score=69.73  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=68.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCC--------EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVK--------HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~--------~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~  361 (597)
                      ++..|||--||+|.++...+..  ...        +++|.|+++.+++.|+++....+.....     .+...| ...++
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i-----~~~~~D-~~~l~  101 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI-----DFIQWD-ARELP  101 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE-----EEEE---GGGGG
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce-----EEEecc-hhhcc
Confidence            5689999999999999875433  222        3889999999999999998876654332     122223 22333


Q ss_pred             CCCCceeEEEEccchhhhccCH----HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        362 DKALELDLVSCQFCIHYSFESV----QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~----~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ...+++|+|++.--...-....    .-...+++.+.++|++ ..++++..+.
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~  153 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR  153 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence            3346799999975443321221    2245678888899999 4444444433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.73  E-value=0.00041  Score=66.86  Aligned_cols=108  Identities=17%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh--hhccCCCCCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE--LRSQYEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d--l~e~l~~~~~s  366 (597)
                      ..+.-||++|.|+|-++..++..|.  ..++.++.|++.+....+++.....-+      ++.|..+  +. ...  ...
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~------gda~~l~~~l~-e~~--gq~  117 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIIN------GDAFDLRTTLG-EHK--GQF  117 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccc------cchhhHHHHHh-hcC--CCe
Confidence            3678999999999999999998874  579999999999999999887654321      2344433  21 122  235


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ||.|+|.--+-.+  ......++|+.+...|.+||.|+-.+..
T Consensus       118 ~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         118 FDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             eeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            9999997655443  3356678999999999999999877655

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.73  E-value=0.00021  Score=76.96  Aligned_cols=47  Identities=17%  Similarity=0.183  Sum_probs=40.7

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK  341 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~  341 (597)
                      .+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++....+..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~  245 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID  245 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            469999999999999777654 69999999999999999988776543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.72  E-value=0.00013  Score=76.60  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             CCCEEEEECCCCChhHHHHHh--------cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN--------GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYED  362 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~--------~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~  362 (597)
                      ++.+|||-+||+|.++..+..        .....++|+|+++.++..|+-++.-.+......    .....+ +......
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~----~i~~~d~l~~~~~~  121 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI----NIIQGDSLENDKFI  121 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC----EEEES-TTTSHSCT
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc----cccccccccccccc
Confidence            567899999999999887654        234589999999999999987654333322110    022222 2222222


Q ss_pred             CCCceeEEEEccchhhh------------c-----cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        363 KALELDLVSCQFCIHYS------------F-----ESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~l------------F-----es~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ...+||+|+++-.+...            |     .....-..++..+.+.|++||++.+.+|+.
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            23579999997432221            0     011122358899999999999999988865

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.72  E-value=0.00033  Score=68.81  Aligned_cols=112  Identities=22%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCC--CceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKA--LELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~--~sFDv  369 (597)
                      .+.++||+-+|+|.+....+..|...++.||.+...+...+++....+......     .+..+....+....  ++||+
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~-----~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEAR-----VLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceE-----EEeecHHHHHHhcCCCCcccE
Confidence            578999999999999999999999999999999999999999988777443332     44443222222111  24999


Q ss_pred             EEEccchhhhccCHHHHHHHHHH--HHHhccCCcEEEEEeCChh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKN--AAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~--i~rlLKPGG~fIit~pn~~  411 (597)
                      |+.---++.-   .-+....+..  -..+|+|||.+++......
T Consensus       118 VflDPPy~~~---l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~  158 (187)
T COG0742         118 VFLDPPYAKG---LLDKELALLLLEENGWLKPGALIVVEHDKDV  158 (187)
T ss_pred             EEeCCCCccc---hhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence            9986555421   1122233333  4577999999999876553

>KOG3420|consensus

Probab=97.71  E-value=4.8e-05  Score=71.55  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=59.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+++++|||||.|-+.....-.+...|+|+||.+++++.+.++..+.....       ++++++.....+. .+.||.++
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi-------dlLqcdildle~~-~g~fDtav  119 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI-------DLLQCDILDLELK-GGIFDTAV  119 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh-------heeeeeccchhcc-CCeEeeEE
Confidence            578899999999999977776777889999999999999999887765543       2566654333322 37899998


Q ss_pred             Eccch
Q psy17742        372 CQFCI  376 (597)
Q Consensus       372 ~~~vL  376 (597)
                      .+--+
T Consensus       120 iNppF  124 (185)
T KOG3420|consen  120 INPPF  124 (185)
T ss_pred             ecCCC
Confidence            87443

>KOG2352|consensus

Probab=97.70  E-value=0.00019  Score=79.01  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=81.4

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      .++|-+|||.-.+...+.+.|+..++.+|+|+..|+....+........        .+.......+.+++++||+|+.-
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~--------~~~~~d~~~l~fedESFdiVIdk  121 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEM--------QMVEMDMDQLVFEDESFDIVIDK  121 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcce--------EEEEecchhccCCCcceeEEEec
Confidence            3899999999999999999999999999999999999888764211111        22222222333444679999999


Q ss_pred             cchhhhccCHHHH------HHHHHHHHHhccCCcEEEEEeC
Q psy17742        374 FCIHYSFESVQQA------RCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       374 ~vLh~lFes~~d~------~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ..++++|+.+...      ...+.+++++|+|||+++..+.
T Consensus       122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            9999998766543      4789999999999999766544

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.70  E-value=0.0001  Score=77.45  Aligned_cols=77  Identities=18%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++...+......     +...|... ...  ..||+|+
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~-----ii~~Dal~-~~~--~~~d~Vv  106 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLE-----VIEGDALK-TEF--PYFDVCV  106 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEE-----EEECCHhh-hcc--cccCEEE
Confidence            57899999999999999988776 589999999999999999876543221111     33444222 122  2589999


Q ss_pred             Eccchh
Q psy17742        372 CQFCIH  377 (597)
Q Consensus       372 ~~~vLh  377 (597)
                      ++...+
T Consensus       107 aNlPY~  112 (294)
T PTZ00338        107 ANVPYQ  112 (294)
T ss_pred             ecCCcc
Confidence            875553

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.62  E-value=0.00022  Score=76.99  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=40.6

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK  341 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~  341 (597)
                      .+|||++||+|.++..+++. ..+|+|+|+++.+++.|+++....+..
T Consensus       208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~  254 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID  254 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            57999999999999977765 469999999999999999988776543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.62  E-value=0.00069  Score=70.49  Aligned_cols=108  Identities=19%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFD  368 (597)
                      .+.+|||+|||.|.-+..+...  ...+++++|.|+.|++.++............      ..... ..+..+.  ...|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~------~~~~~~~~~~~~~--~~~D  104 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNA------EWRRVLYRDFLPF--PPDD  104 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccc------hhhhhhhcccccC--CCCc
Confidence            4679999999999755443321  4568999999999999998876544321110      01111 1111222  2359


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +|++.++|.-+ .+ .....+++++.+.+.+  +||+.-+...
T Consensus       105 Lvi~s~~L~EL-~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen  105 LVIASYVLNEL-PS-AARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             EEEEehhhhcC-Cc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence            99999999988 34 6778888888888776  7777766653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.52  E-value=0.00017  Score=75.77  Aligned_cols=59  Identities=19%  Similarity=0.172  Sum_probs=47.6

Q ss_pred             HHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHh
Q psy17742        275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       275 ~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      +|+.+.+..+...    ++..+||++||.|+++..+++..  ...|+|+|.++.+++.|++++..
T Consensus         6 Vll~Evl~~L~~~----pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050          6 VLLDEVVDALAIK----PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             ccHHHHHHhhCCC----CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            4566666655332    56799999999999999988764  35899999999999999988754

>KOG2798|consensus

Probab=97.46  E-value=0.0042  Score=65.27  Aligned_cols=204  Identities=18%  Similarity=0.214  Sum_probs=115.9

Q ss_pred             HhhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742        233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN  312 (597)
Q Consensus       233 ~~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~  312 (597)
                      ..|..+.+..+..+......+..+|..            ..+-+|..+..............+||==|||.|+++..++.
T Consensus       103 ~~m~kv~s~l~~i~RdwssE~~~ERd~------------~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~  170 (369)
T KOG2798|consen  103 DFMSKVSSTLKQICRDWSSEGQRERDQ------------LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLAC  170 (369)
T ss_pred             HHHHHHHHHHHHHHHHhhhccchhhhh------------hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHH
Confidence            344556666666666554444444331            22235555555544444444568899999999999999999


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHHHhhhhhcc-------------------cccc-cc-----------cee--e-hhhhc
Q psy17742        313 GGVKHVVFADIASVSIEDCKTRYEELKRKEE-------------------ARPY-RR-----------NVF--S-AELRS  358 (597)
Q Consensus       313 ~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~-------------------~~~~-~~-----------d~F--~-~dl~e  358 (597)
                      .|+ .+-|-++|--|+-...=-+..-...+.                   ..++ +.           .-|  . .|..+
T Consensus       171 ~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~e  249 (369)
T KOG2798|consen  171 LGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLE  249 (369)
T ss_pred             hcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeE
Confidence            886 677888888876432221110000000                   0000 00           011  1 01111


Q ss_pred             cCC--CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecC
Q psy17742        359 QYE--DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLF  436 (597)
Q Consensus       359 ~l~--~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~  436 (597)
                      -.+  ...+.||+|+..|.+    .+..+....|..|.++|||||+++=.                   |--+|  .|.+
T Consensus       250 vy~~s~~~~~~d~VvTcfFI----DTa~NileYi~tI~~iLk~GGvWiNl-------------------GPLlY--HF~d  304 (369)
T KOG2798|consen  250 VYGTSSGAGSYDVVVTCFFI----DTAHNILEYIDTIYKILKPGGVWINL-------------------GPLLY--HFED  304 (369)
T ss_pred             EecCcCCCCccceEEEEEEe----echHHHHHHHHHHHHhccCCcEEEec-------------------cceee--eccC
Confidence            111  123469999877666    34488899999999999999998652                   22222  1222


Q ss_pred             CCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHH
Q psy17742        437 DTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFY  490 (597)
Q Consensus       437 ~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~  490 (597)
                      +       .|..-    +..|     =.+.+.|..+++..||+++.......-|
T Consensus       305 ~-------~g~~~----~~si-----Els~edl~~v~~~~GF~~~ke~~Idt~Y  342 (369)
T KOG2798|consen  305 T-------HGVEN----EMSI-----ELSLEDLKRVASHRGFEVEKERGIDTTY  342 (369)
T ss_pred             C-------CCCcc----cccc-----cccHHHHHHHHHhcCcEEEEeeeeeccc
Confidence            1       11100    0111     2578899999999999999877554444

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.42  E-value=0.00097  Score=66.66  Aligned_cols=107  Identities=20%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             CCCCEEEEECCCCChhHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhc--------cccccccceeehhhhccCC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKE--------EARPYRRNVFSAELRSQYE  361 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~--------~~~~~~~d~F~~dl~e~l~  361 (597)
                      +++...+|||||.|......+ ..+..+.+||++.+...+.|...........        ......++++..+....+ 
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~-  119 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI-  119 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-
Confidence            367899999999999877643 4567779999999999888876443322110        000111222222211111 


Q ss_pred             CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      .  ...|+|+++...   |.  +++...|..+...||+|-++|-
T Consensus       120 ~--s~AdvVf~Nn~~---F~--~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  120 W--SDADVVFVNNTC---FD--PDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             G--HC-SEEEE--TT---T---HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             h--cCCCEEEEeccc---cC--HHHHHHHHHHHhcCCCCCEEEE
Confidence            1  137999998764   43  5666777888889999887764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.39  E-value=0.00062  Score=76.90  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             CCEEEEECCCCChhHHHHHhcC---------CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG---------VKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g---------~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      ..+|||.|||+|.++..++...         ...++|+|+++.++..|+.++....
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            4689999999999998765421         1478999999999999998876554

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.36  E-value=0.00042  Score=66.85  Aligned_cols=75  Identities=20%  Similarity=0.228  Sum_probs=48.3

Q ss_pred             EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      .|||+.||.|+.++.+++.. .+|++||+++..++.|+.++.-.+...+...+.+|++..  ...+.... .||+|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~--~~~~~~~~-~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL--LKRLKSNK-IFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH--GGGB-------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH--Hhhccccc-cccEEEEC
Confidence            59999999999999999886 599999999999999999988887655443222222221  22222211 28999874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1661|consensus

Probab=97.34  E-value=0.00052  Score=68.34  Aligned_cols=106  Identities=18%  Similarity=0.161  Sum_probs=69.5

Q ss_pred             CCCEEEEECCCCChhHHHHHh---cCCCEEEEEeCChHHHHHHHHHHHhhhhhccc--cc-ccccee-ehhhhccCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN---GGVKHVVFADIASVSIEDCKTRYEELKRKEEA--RP-YRRNVF-SAELRSQYEDKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~---~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~--~~-~~~d~F-~~dl~e~l~~~~  364 (597)
                      ++.+.||+|+|+|.++..++.   ......+|||.-++.|+.+++++...-.....  .. .....| ..|-...++. .
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-~  160 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-Q  160 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-c
Confidence            689999999999999877653   12234599999999999999987664321000  00 000122 2233333443 3


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      .+||.|.|..+-          ....+++...|+|||.+++-..
T Consensus       161 a~YDaIhvGAaa----------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  161 APYDAIHVGAAA----------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CCcceEEEccCc----------cccHHHHHHhhccCCeEEEeec
Confidence            579999997433          3456777788999999988653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.23  E-value=0.0021  Score=75.19  Aligned_cols=117  Identities=11%  Similarity=-0.055  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-------------------------------------------CCCEEEEEeCChHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-------------------------------------------GVKHVVFADIASVSI  328 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-------------------------------------------g~~~V~GIDiS~~mI  328 (597)
                      ++..++|-+||+|.+++..+..                                           ...+++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            4678999999999999875431                                           012699999999999


Q ss_pred             HHHHHHHHhhhhhccccccccceeehhhhcc-CCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhcc---CCcEEE
Q psy17742        329 EDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLK---PGGFFV  404 (597)
Q Consensus       329 e~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLK---PGG~fI  404 (597)
                      +.|+.+....+......     +...|.... .+...++||+|+++--...-.....+...+.+.+.+.||   +|+.++
T Consensus       270 ~~A~~N~~~~g~~~~i~-----~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~  344 (702)
T PRK11783        270 QAARKNARRAGVAELIT-----FEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA  344 (702)
T ss_pred             HHHHHHHHHcCCCcceE-----EEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            99999988876653321     333332221 122224699999985543222333455556555555554   899998


Q ss_pred             EEeCChhHH
Q psy17742        405 GTVPDSNQI  413 (597)
Q Consensus       405 it~pn~~~i  413 (597)
                      +.+.+....
T Consensus       345 llt~~~~l~  353 (702)
T PRK11783        345 LFSSSPELL  353 (702)
T ss_pred             EEeCCHHHH
Confidence            888876533

>KOG0820|consensus

Probab=97.23  E-value=0.00083  Score=69.22  Aligned_cols=74  Identities=22%  Similarity=0.379  Sum_probs=56.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCcee
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELD  368 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFD  368 (597)
                      .+++..||++|.|||.++.+++..+ ++|+++++++.|+....+|.+.........     ++..| +..++|    .||
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLq-----V~~gD~lK~d~P----~fd  125 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQ-----VLHGDFLKTDLP----RFD  125 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceee-----EEecccccCCCc----ccc
Confidence            3478999999999999999999998 599999999999999999987765433322     33333 112232    399


Q ss_pred             EEEEc
Q psy17742        369 LVSCQ  373 (597)
Q Consensus       369 vVi~~  373 (597)
                      +++++
T Consensus       126 ~cVsN  130 (315)
T KOG0820|consen  126 GCVSN  130 (315)
T ss_pred             eeecc
Confidence            99985

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0018  Score=71.60  Aligned_cols=129  Identities=18%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc
Q psy17742        270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR  349 (597)
Q Consensus       270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~  349 (597)
                      .-+...|+......+...    ++.+|||+=||.|.++..+++.. .+|+|+|+++.+|+.|++++..++..+ .     
T Consensus       275 ~~~~ekl~~~a~~~~~~~----~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N-~-----  343 (432)
T COG2265         275 PAVAEKLYETALEWLELA----GGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDN-V-----  343 (432)
T ss_pred             HHHHHHHHHHHHHHHhhc----CCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCc-E-----
Confidence            334444555544443322    56789999999999999998554 699999999999999999998887775 3     


Q ss_pred             ceeehhhhccCCC---CCCceeEEEEccchhhhccCHHHHH-HHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        350 NVFSAELRSQYED---KALELDLVSCQFCIHYSFESVQQAR-CMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       350 d~F~~dl~e~l~~---~~~sFDvVi~~~vLh~lFes~~d~~-~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                       .|..+..+.+..   ....+|+|+.---       ..-.. .+++.+.+ ++|-.++++++ |+..+...+..
T Consensus       344 -~f~~~~ae~~~~~~~~~~~~d~VvvDPP-------R~G~~~~~lk~l~~-~~p~~IvYVSC-NP~TlaRDl~~  407 (432)
T COG2265         344 -EFIAGDAEEFTPAWWEGYKPDVVVVDPP-------RAGADREVLKQLAK-LKPKRIVYVSC-NPATLARDLAI  407 (432)
T ss_pred             -EEEeCCHHHHhhhccccCCCCEEEECCC-------CCCCCHHHHHHHHh-cCCCcEEEEeC-CHHHHHHHHHH
Confidence             454432222211   1236899987421       11122 45555544 46666666654 66566555543

>KOG1663|consensus

Probab=97.12  E-value=0.0068  Score=61.30  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh--hhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA--ELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~--dl~e~l~~~~~sF  367 (597)
                      .++++||||.=+|.-+..++..  .-.+|+++|+++...+.+.......+......++.+.....  .+....  ..+.|
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~--~~~tf  150 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG--ESGTF  150 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC--CCCce
Confidence            4688999999999888776643  13589999999999999977766665554432111111111  022222  24679


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+++.-.       ........+..+.++||+||++++.
T Consensus       151 DfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  151 DFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             eEEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence            9997631       2245558899999999999999985

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0049  Score=66.52  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh--ccCCCCC
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWINGG---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR--SQYEDKA  364 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~--e~l~~~~  364 (597)
                      +.++.+|||++++.|+=+..++...   ...|+++|+++.-+...+++....+..+..      ....+..  .......
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~------~~~~d~~~~~~~~~~~  227 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVI------VVNKDARRLAELLPGG  227 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceE------EEeccccccccccccc
Confidence            3478999999999999777766543   235799999999999999999888776522      3333211  1111222


Q ss_pred             CceeEEEEc------cchhhhc-----cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        365 LELDLVSCQ------FCIHYSF-----ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       365 ~sFDvVi~~------~vLh~lF-----es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++||.|++-      ++++--.     -+.       .-..++|..+.++|||||.|+-+|.+-
T Consensus       228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            359999862      2221110     011       124678999999999999999987654

>KOG3987|consensus

Probab=97.10  E-value=0.00011  Score=72.81  Aligned_cols=97  Identities=19%  Similarity=0.313  Sum_probs=71.5

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.++||||+|.|..+..++.. +.+|++.++|..|+...+++.-.             .+..  . .+...+-+||+|+|
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~yn-------------Vl~~--~-ew~~t~~k~dli~c  175 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYN-------------VLTE--I-EWLQTDVKLDLILC  175 (288)
T ss_pred             CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCc-------------eeee--h-hhhhcCceeehHHH
Confidence            579999999999999877644 35799999999998877764110             1111  1 12222346999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccC-CcEEEEEeCCh
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKP-GGFFVGTVPDS  410 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKP-GG~fIit~pn~  410 (597)
                      ...|.-.    .++-++|+.+..+|+| .|.+|+...-+
T Consensus       176 lNlLDRc----~~p~kLL~Di~~vl~psngrvivaLVLP  210 (288)
T KOG3987|consen  176 LNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVALVLP  210 (288)
T ss_pred             HHHHHhh----cChHHHHHHHHHHhccCCCcEEEEEEec
Confidence            9888666    5677999999999999 89888875433

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.08  E-value=0.0023  Score=68.54  Aligned_cols=105  Identities=22%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .|.+|||+-+|-|.++..++..|...|+++|++|.+++.+++++.-++......     .+..|..+..+. .+.||-|+
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~-----~i~gD~rev~~~-~~~aDrIi  261 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVE-----PILGDAREVAPE-LGVADRII  261 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceee-----EEeccHHHhhhc-cccCCEEE
Confidence            578999999999999999999986669999999999999999998887765432     444443332222 15699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +...        .....++..+.++|++||++..-....
T Consensus       262 m~~p--------~~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         262 MGLP--------KSAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             eCCC--------CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence            8743        234567888888999999987654433

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.002  Score=64.33  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=68.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~  365 (597)
                      ++..|+|||+-.|+|++.+++...  ..|+|+|+.|--.         ...   ...+.+++...+    +.+.+..  .
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~~~---V~~iq~d~~~~~~~~~l~~~l~~--~  110 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------IPG---VIFLQGDITDEDTLEKLLEALGG--A  110 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------CCC---ceEEeeeccCccHHHHHHHHcCC--C
Confidence            679999999999999998776532  2499999976421         000   111112233222    3333433  3


Q ss_pred             ceeEEEEccc--------hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh---hHHHHHHh
Q psy17742        366 ELDLVSCQFC--------IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS---NQIMARYR  418 (597)
Q Consensus       366 sFDvVi~~~v--------Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~---~~i~~~l~  418 (597)
                      .+|+|++-.+        .+|. -...-...++.-+..+|+|||.|++-+...   +.+++.++
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~  173 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALR  173 (205)
T ss_pred             CcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHH
Confidence            4799997432        2332 122334566777788999999999887666   44444444

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.97  E-value=0.0051  Score=64.39  Aligned_cols=114  Identities=25%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCce
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sF  367 (597)
                      .++.+|||+++|.|+=+..++..-  -..+++.|+++.-+...+.+....+..+..      .+..|.....+. ....|
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~------~~~~D~~~~~~~~~~~~f  157 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVI------VINADARKLDPKKPESKF  157 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEE------EEESHHHHHHHHHHTTTE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEE------EEeecccccccccccccc
Confidence            367899999999999777766532  358999999999999999998887765432      333332222111 11259


Q ss_pred             eEEEEc------cchhhh------cc--C----HHHHHHHHHHHHHhc----cCCcEEEEEeCCh
Q psy17742        368 DLVSCQ------FCIHYS------FE--S----VQQARCMLKNAAECL----KPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~------~vLh~l------Fe--s----~~d~~~~L~~i~rlL----KPGG~fIit~pn~  410 (597)
                      |.|++-      +++..-      ..  .    ..-..++|+++.+.|    ||||+++-+|-.-
T Consensus       158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            999872      112111      00  0    012367899999999    9999999988544

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.94  E-value=0.0055  Score=66.06  Aligned_cols=65  Identities=22%  Similarity=0.194  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc
Q psy17742        272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE  342 (597)
Q Consensus       272 vKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~  342 (597)
                      +...|+......+...    + .+|||+-||.|.++..++... .+|+|||+++.+|+.|++++..++..+
T Consensus       181 ~~~~l~~~~~~~l~~~----~-~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n  245 (352)
T PF05958_consen  181 QNEKLYEQALEWLDLS----K-GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDN  245 (352)
T ss_dssp             HHHHHHHHHHHHCTT-----T-TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred             HHHHHHHHHHHHhhcC----C-CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence            4444666555544322    2 379999999999999998765 699999999999999999988877654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.94  E-value=0.0084  Score=55.97  Aligned_cols=48  Identities=27%  Similarity=0.270  Sum_probs=41.8

Q ss_pred             CCCEEEEECCCCChhHHHHHh-----cCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-----GGVKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-----~g~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      +...|+|+|||.|.++..++.     ....+|+|||.++..++.|.++.....
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            578999999999999998877     444599999999999999999877665

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.87  E-value=0.0061  Score=61.37  Aligned_cols=96  Identities=20%  Similarity=0.245  Sum_probs=67.6

Q ss_pred             CCEEEEECCCCChhHHHHH--hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc-eeE
Q psy17742        293 PIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE-LDL  369 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la--~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s-FDv  369 (597)
                      +.+|+|||+|.|.....++  ... .+|+-+|....-+...+.-..+.+..+..      ++.. -.+.+... .. ||+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL~L~nv~------i~~~-RaE~~~~~-~~~~D~  138 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKELGLENVE------IVHG-RAEEFGQE-KKQYDV  138 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHhCCCCeE------Eehh-hHhhcccc-cccCcE
Confidence            5899999999999887755  233 36999999998888887777776665432      2222 22333321 13 999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      |++..+        ..+..++.-+..+||+||.++.
T Consensus       139 vtsRAv--------a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         139 VTSRAV--------ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEeehc--------cchHHHHHHHHHhcccCCcchh
Confidence            999854        3455678888899999998764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.80  E-value=0.018  Score=62.50  Aligned_cols=123  Identities=15%  Similarity=0.025  Sum_probs=81.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--C--------------------------------------EEEEEeCChHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--K--------------------------------------HVVFADIASVSIEDC  331 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~--------------------------------------~V~GIDiS~~mIe~A  331 (597)
                      ++..++|-=||+|.+++..+-.+.  +                                      .++|+|+++.+|+.|
T Consensus       191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A  270 (381)
T COG0116         191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA  270 (381)
T ss_pred             CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence            346899999999999988654331  1                                      378999999999999


Q ss_pred             HHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHH----HHHHHHHHHHhccCCcEEEEEe
Q psy17742        332 KTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQ----ARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       332 ~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d----~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +.++...+.....      .|.......+..+.+.+|+|+|+--..-=+.+...    ...+.+.+++.++-.+.+++++
T Consensus       271 k~NA~~AGv~d~I------~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         271 KANARAAGVGDLI------EFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHhcCCCceE------EEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            9999988776543      34433233343332469999998543221223322    3455666677788888888888


Q ss_pred             CChhHHHHHHhhh
Q psy17742        408 PDSNQIMARYRRH  420 (597)
Q Consensus       408 pn~~~i~~~l~~~  420 (597)
                      .........++..
T Consensus       345 ~e~~~~~~~~ra~  357 (381)
T COG0116         345 SEDLLFCLGLRAD  357 (381)
T ss_pred             cHHHHHHHhhhhc
Confidence            7665555555543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.77  E-value=0.015  Score=58.74  Aligned_cols=103  Identities=21%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh--ccCCCCCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR--SQYEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~--e~l~~~~~s  366 (597)
                      +++.+||-||.++|....++++- + -..|++++.|+.+....-.-.....+..        -+..|..  ..+..--+.
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIi--------PIl~DAr~P~~Y~~lv~~  143 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNII--------PILEDARHPEKYRMLVEM  143 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEE--------EEES-TTSGGGGTTTS--
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCcee--------eeeccCCChHHhhccccc
Confidence            47899999999999988887653 2 2489999999976554443333222211        1111111  111111246


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      .|+|++--+      ..++.+-++.|+...||+||.|++.+
T Consensus       144 VDvI~~DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  144 VDVIFQDVA------QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             EEEEEEE-S------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEecCC------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            999988522      23688889999999999999999976

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.66  E-value=0.0058  Score=60.46  Aligned_cols=104  Identities=18%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+++|||+|+|.|..++..++.|...|+..|+.+..+...+-+...++....       +...++   +. .+..||+|+
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~-------~~~~d~---~g-~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSIL-------FTHADL---IG-SPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeE-------Eeeccc---cC-CCcceeEEE
Confidence            5789999999999999999999988999999998877777666655553321       222221   22 345699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..++..-    ....+++.-..++...|-.+++-.|..
T Consensus       148 agDlfy~~----~~a~~l~~~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         148 AGDLFYNH----TEADRLIPWKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             eeceecCc----hHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            98875221    455667774444444455555555554

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.0089  Score=60.82  Aligned_cols=100  Identities=23%  Similarity=0.218  Sum_probs=66.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++..+||||+.||+++..+++.|+.+|+|+|..-..+..--+.-.......+.  .++ .+.   .+.+.   +..|+|+
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~t--N~r-~l~---~~~~~---~~~d~~v  149 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERT--NVR-YLT---PEDFT---EKPDLIV  149 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecC--Chh-hCC---HHHcc---cCCCeEE
Confidence            67899999999999999999999999999999887654322211000000000  000 011   11121   2478888


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |--++       -....+|-.+..+|+|||.++.-+
T Consensus       150 ~DvSF-------ISL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         150 IDVSF-------ISLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             EEeeh-------hhHHHHHHHHHHhcCCCceEEEEe
Confidence            87555       356789999999999999887754

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.53  E-value=0.0099  Score=63.66  Aligned_cols=87  Identities=15%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .++.++|||||++|+++..+++.|. .|++||..+-    + ......+.   .     ..+..+.....+. .+.+|+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l----~-~~L~~~~~---V-----~h~~~d~fr~~p~-~~~vDwv  274 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM----A-QSLMDTGQ---V-----EHLRADGFKFRPP-RKNVDWL  274 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc----C-HhhhCCCC---E-----EEEeccCcccCCC-CCCCCEE
Confidence            3689999999999999999999996 9999996541    1 11111111   1     0222221222221 3579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPG  400 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPG  400 (597)
                      +|-.+.        .+..+++-+.+.|..|
T Consensus       275 VcDmve--------~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        275 VCDMVE--------KPARVAELMAQWLVNG  296 (357)
T ss_pred             EEeccc--------CHHHHHHHHHHHHhcC
Confidence            996543        4556777777777665

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.53  E-value=0.041  Score=55.10  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=71.5

Q ss_pred             EEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEcc
Q psy17742        296 VLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQF  374 (597)
Q Consensus       296 VLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~  374 (597)
                      |.||||-.|.+...+.+.|. .+++++|+++..++.|++.....+...+..     ....|-...++.. ...|+|+..+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~-----~rlgdGL~~l~~~-e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIE-----VRLGDGLEVLKPG-EDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEE-----EEE-SGGGG--GG-G---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEE-----EEECCcccccCCC-CCCCEEEEec
Confidence            68999999999999998884 579999999999999999998877654431     2233322334332 2278876654


Q ss_pred             chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhh
Q psy17742        375 CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRR  419 (597)
Q Consensus       375 vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~  419 (597)
                      += .     .-...+|.+....++....||+.-.+. ..++..|..
T Consensus        75 MG-G-----~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~  114 (205)
T PF04816_consen   75 MG-G-----ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE  114 (205)
T ss_dssp             E--H-----HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred             CC-H-----HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence            32 1     356778888888887777888877666 444444444

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2915|consensus

Probab=96.38  E-value=0.022  Score=59.05  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=80.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      |+.+||+-|.|+|.++..+++.  .-.+++-.|+-..-.+.|.+.+++.+.....+.+.+|+-.    ..+...+..+|.
T Consensus       105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~----~GF~~ks~~aDa  180 (314)
T KOG2915|consen  105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG----SGFLIKSLKADA  180 (314)
T ss_pred             CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc----CCccccccccce
Confidence            7899999999999999888764  2358999999999999999999888766554333333322    233333567898


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEeCChhHHHHHHhh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~pn~~~i~~~l~~  419 (597)
                      |+.-         .+.+..++-.++.+||.+| +|+...|.-+.+-.....
T Consensus       181 VFLD---------lPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~  222 (314)
T KOG2915|consen  181 VFLD---------LPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEA  222 (314)
T ss_pred             EEEc---------CCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHH
Confidence            8653         2455567777778898876 666666666666544443

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.01  Score=61.34  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ++++.+.....    .++..|||||+|.|.++..+++.+. .|+++++++.++...+++..
T Consensus        18 v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          18 VIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             HHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc
Confidence            45555553322    2478999999999999999999884 89999999999999998875

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.33  E-value=0.032  Score=59.82  Aligned_cols=115  Identities=20%  Similarity=0.323  Sum_probs=63.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc------------C-----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING------------G-----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA  354 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~------------g-----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~  354 (597)
                      ...+|+|+||..|..+..+...            +     --+|+.-|+-.+=-...-+.+.........   ...+|..
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~---~~~~f~~   92 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK---FRNYFVS   92 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH---TTSEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC---CceEEEE
Confidence            4679999999999977654321            1     027888887665443333322222100000   0124443


Q ss_pred             h-----hhccCCCCCCceeEEEEccchhhhcc------C-----------------------------HHHHHHHHHHHH
Q psy17742        355 E-----LRSQYEDKALELDLVSCQFCIHYSFE------S-----------------------------VQQARCMLKNAA  394 (597)
Q Consensus       355 d-----l~e~l~~~~~sFDvVi~~~vLh~lFe------s-----------------------------~~d~~~~L~~i~  394 (597)
                      .     ...-+|  .++.|++++.++|||+-.      +                             ..|+..+|+.=+
T Consensus        93 gvpgSFy~rLfP--~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra  170 (334)
T PF03492_consen   93 GVPGSFYGRLFP--SNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA  170 (334)
T ss_dssp             EEES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCC--CCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3     122334  367999999999999721      0                             145677888888


Q ss_pred             HhccCCcEEEEEeCChh
Q psy17742        395 ECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       395 rlLKPGG~fIit~pn~~  411 (597)
                      +-|+|||+++++++..+
T Consensus       171 ~ELv~GG~mvl~~~gr~  187 (334)
T PF03492_consen  171 EELVPGGRMVLTFLGRD  187 (334)
T ss_dssp             HHEEEEEEEEEEEEE-S
T ss_pred             heeccCcEEEEEEeecc
Confidence            99999999999986553

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1709|consensus

Probab=96.18  E-value=0.057  Score=54.36  Aligned_cols=104  Identities=15%  Similarity=0.097  Sum_probs=71.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+||.+|-|-|....++.......-+-|+..+..++..+...-.....  .  ++-.-.-.|....++++  .||-|+
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~n--V--iil~g~WeDvl~~L~d~--~FDGI~  174 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKEN--V--IILEGRWEDVLNTLPDK--HFDGIY  174 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccc--e--EEEecchHhhhcccccc--CcceeE
Confidence            57999999999999988888887767788999999887776542211111  1  00000112244556664  599996


Q ss_pred             Ec-cchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        372 CQ-FCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       372 ~~-~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      -- ++=+|     ++...+.+.+.++|||+|+|-+.
T Consensus       175 yDTy~e~y-----Edl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  175 YDTYSELY-----EDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eechhhHH-----HHHHHHHHHHhhhcCCCceEEEe
Confidence            53 32333     89999999999999999988553

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.16  E-value=0.038  Score=57.39  Aligned_cols=129  Identities=14%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCC--ChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccce
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGK--GGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV  351 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGt--G~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~  351 (597)
                      ++.+..+.+....   .=...||||||-  -......++.  .-++|+-+|..+..+..++..+...... ....+..|.
T Consensus        55 Fl~RaVr~la~~~---GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g-~t~~v~aD~  130 (267)
T PF04672_consen   55 FLRRAVRYLAEEA---GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRG-RTAYVQADL  130 (267)
T ss_dssp             HHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTS-EEEEEE--T
T ss_pred             HHHHHHHHHHHhc---CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCc-cEEEEeCCC
Confidence            4444444443331   124699999994  3344444432  3469999999999999999887665431 111011122


Q ss_pred             eehh-h------hccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        352 FSAE-L------RSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       352 F~~d-l------~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      ...+ +      ...+.. .. -=.|++..+|||+ .+.+++..+++.+...|.||.+|+++....+
T Consensus       131 r~p~~iL~~p~~~~~lD~-~r-PVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  131 RDPEAILAHPEVRGLLDF-DR-PVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             T-HHHHHCSHHHHCC--T-TS---EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCHHHHhcCHHHHhcCCC-CC-CeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            2221 1      111211 11 2256677789997 6667899999999999999999999986654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.13  E-value=0.01  Score=54.51  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=38.6

Q ss_pred             EEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        295 KVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      .|||+|||.|.++..++..+. .+++++|+++.+++.+++++...+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~   46 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN   46 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC
Confidence            389999999999998887664 379999999999999999876654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.05  E-value=0.037  Score=59.42  Aligned_cols=113  Identities=18%  Similarity=0.200  Sum_probs=74.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHH--HHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTR--YEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er--~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ...+||=+|.|.|.-++.+.+.. +.+++-+|++|.||+.+++.  .+..+......+ ....+..|..+.+......||
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dp-Rv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDP-RVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCC-eeEEEeccHHHHHHhhccccc
Confidence            34689999999999999998876 78999999999999999853  222221111000 011344443333433445799


Q ss_pred             EEEEcc------chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQF------CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~------vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +||.-+      ++.-+     --..+..-+++.|+++|.+++..-++
T Consensus       368 ~vIVDl~DP~tps~~rl-----YS~eFY~ll~~~l~e~Gl~VvQags~  410 (508)
T COG4262         368 VVIVDLPDPSTPSIGRL-----YSVEFYRLLSRHLAETGLMVVQAGSP  410 (508)
T ss_pred             EEEEeCCCCCCcchhhh-----hhHHHHHHHHHhcCcCceEEEecCCC
Confidence            998742      22111     12468888999999999999875444

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.03  E-value=0.005  Score=54.07  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             EEECCCCChhHHHHHhc----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCceeE
Q psy17742        297 LDMGSGKGGDMLKWING----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELDL  369 (597)
Q Consensus       297 LDLGCGtG~~l~~la~~----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFDv  369 (597)
                      ||||+..|..+..+++.    +..+++++|..+. .+.+++..+..+...+..     ++..+   ....++  .++||+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~-----~~~g~s~~~l~~~~--~~~~dl   72 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVE-----FIQGDSPDFLPSLP--DGPIDL   72 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEE-----EEES-THHHHHHHH--H--EEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEE-----EEEcCcHHHHHHcC--CCCEEE
Confidence            68999999877766542    2237999999995 223333333222222221     23322   122232  256999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+.=. -|--    +.....++.+...|+|||++++.
T Consensus        73 i~iDg-~H~~----~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   73 IFIDG-DHSY----EAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             EEEES----H----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEECC-CCCH----HHHHHHHHHHHHHcCCCeEEEEe
Confidence            98754 2222    66778899999999999999874

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.95  E-value=0.039  Score=52.07  Aligned_cols=84  Identities=24%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCceeEEEEccchhhhcc-------CHHHH
Q psy17742        317 HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELDLVSCQFCIHYSFE-------SVQQA  386 (597)
Q Consensus       317 ~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFDvVi~~~vLh~lFe-------s~~d~  386 (597)
                      +|+|+||-+.+|+.+++++.+.+...+..     ++..+   +.+.++.  +++|+|+.+  |.|+..       ..+.-
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~-----li~~sHe~l~~~i~~--~~v~~~iFN--LGYLPggDk~i~T~~~TT   71 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVT-----LILDSHENLDEYIPE--GPVDAAIFN--LGYLPGGDKSITTKPETT   71 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEE-----EEES-GGGGGGT--S----EEEEEEE--ESB-CTS-TTSB--HHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEE-----EEECCHHHHHhhCcc--CCcCEEEEE--CCcCCCCCCCCCcCcHHH
Confidence            58999999999999999999886654331     33332   3333443  469998776  555532       23445


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCC
Q psy17742        387 RCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       387 ~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ..+|+.+.++|+|||.+++.+..
T Consensus        72 l~Al~~al~lL~~gG~i~iv~Y~   94 (140)
T PF06962_consen   72 LKALEAALELLKPGGIITIVVYP   94 (140)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             HHHHHHHHHhhccCCEEEEEEeC
Confidence            78899999999999999988754

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=95.87  E-value=0.11  Score=53.66  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=40.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ++..|||||+|.|.++..+++.+ .+++++|+++.+++..++++.
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh
Confidence            57899999999999999999888 799999999999999998766

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG3201|consensus

Probab=95.84  E-value=0.035  Score=53.59  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             CCEEEEECCCCChhHHHHHh--cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCCCCCceeE
Q psy17742        293 PIKVLDMGSGKGGDMLKWIN--GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYEDKALELDL  369 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~--~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~~~~sFDv  369 (597)
                      +.+||++|.|--+++--+..  .....|...|-++.+|+..++....+.......  + -.+..... ........+||+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts--c-~vlrw~~~~aqsq~eq~tFDi  106 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTS--C-CVLRWLIWGAQSQQEQHTFDI  106 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccce--e-hhhHHHHhhhHHHHhhCcccE
Confidence            56799999986555444332  234689999999999988877544331111000  0 00000000 001111247999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+|..++-.-    +....+.+.|..+|+|.|.-++..|..
T Consensus       107 IlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen  107 ILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             EEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCcc
Confidence            9999987443    566788999999999999877765533

>KOG4589|consensus

Probab=95.74  E-value=0.036  Score=54.65  Aligned_cols=109  Identities=18%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCC
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDK  363 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~  363 (597)
                      ..++.+|||+||..|.++.-..+.  ....|.|||+-.-.        +..+.....   ..++-+..    +.+.++. 
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p~~Ga~~i~---~~dvtdp~~~~ki~e~lp~-  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------PPEGATIIQ---GNDVTDPETYRKIFEALPN-  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------CCCCccccc---ccccCCHHHHHHHHHhCCC-
Confidence            447899999999999999876553  24579999985421        111111000   00111111    3444544 


Q ss_pred             CCceeEEEEccchhhh----ccC---HHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        364 ALELDLVSCQFCIHYS----FES---VQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~l----Fes---~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                       .+.|+|++-++-...    ..|   .+--..+|.-....++|+|.|++-+.+..
T Consensus       135 -r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  135 -RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             -CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence             569999985431110    011   11123344445567899999999987773

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.65  E-value=0.04  Score=58.17  Aligned_cols=83  Identities=16%  Similarity=0.083  Sum_probs=43.1

Q ss_pred             CCEEEEECCCCChhHHHH-HhcCCCEEEEEeCChHHHHHHHHHHHhh-hhhccccccccceeehh---hhccCCCCCCce
Q psy17742        293 PIKVLDMGSGKGGDMLKW-INGGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAE---LRSQYEDKALEL  367 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~l-a~~g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F~~d---l~e~l~~~~~sF  367 (597)
                      ..++||||||....-.-+ ++....+++|+||++.+++.|++....+ ....+..    .....+   +...+......|
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~----l~~~~~~~~i~~~i~~~~e~~  178 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE----LRKQKNPDNIFDGIIQPNERF  178 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE----EEE--ST-SSTTTSTT--S-E
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE----EEEcCCccccchhhhccccee
Confidence            578999999987543222 2222369999999999999999998877 4433221    011111   222333334579


Q ss_pred             eEEEEccchhhh
Q psy17742        368 DLVSCQFCIHYS  379 (597)
Q Consensus       368 DvVi~~~vLh~l  379 (597)
                      |+.+|+--+|-.
T Consensus       179 dftmCNPPFy~s  190 (299)
T PF05971_consen  179 DFTMCNPPFYSS  190 (299)
T ss_dssp             EEEEE-----SS
T ss_pred             eEEecCCccccC
Confidence            999999888553

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2730|consensus

Probab=95.62  E-value=0.0065  Score=61.11  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      ...|+|.-||.|+.+..++..+. .|++||+++.-|..|+.++.-.+...+..++.+|++..  ...+......+|+|..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~--~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL--ASKLKADKIKYDCVFL  171 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH--HHHHhhhhheeeeeec
Confidence            45799999999999998887774 89999999999999999988888877765444554443  2223332234667766


Q ss_pred             ccch
Q psy17742        373 QFCI  376 (597)
Q Consensus       373 ~~vL  376 (597)
                      +..-
T Consensus       172 sppw  175 (263)
T KOG2730|consen  172 SPPW  175 (263)
T ss_pred             CCCC
Confidence            5433

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.50  E-value=0.0072  Score=57.77  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      .+++.|+|+|..++.|+  +......+++.+++.|||||+|-+.+|+...+.+.+..
T Consensus        44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~   98 (185)
T COG4627          44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH   98 (185)
T ss_pred             CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh
Confidence            34679999999999887  66788899999999999999999999999887776543

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.40  E-value=0.27  Score=51.49  Aligned_cols=110  Identities=18%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             CCCEEEEECCCCChhHHH-HHhc-C-CCEEEEEeCChHHHHHHHHHHH-hhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLK-WING-G-VKHVVFADIASVSIEDCKTRYE-ELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~-la~~-g-~~~V~GIDiS~~mIe~A~er~~-~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+|+=||||.=-++.- +++. + ...|+++|+++.+++.+++-.. ..+......     +...+.. .....-..|
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~-----f~~~d~~-~~~~dl~~~  193 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMS-----FITADVL-DVTYDLKEY  193 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEE-----EEES-GG-GG-GG----
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeE-----EEecchh-ccccccccC
Confidence            346999999997555444 3332 2 2479999999999999998766 333332221     2223321 111122459


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+|+......   .+.+...++|.++.+.++||+.++.-..+.
T Consensus       194 DvV~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  194 DVVFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             CEEEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            9997764331   133577899999999999999998875443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.36  E-value=0.071  Score=54.83  Aligned_cols=105  Identities=20%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||-=-++..|.... ...|+|+||+..+++....-....+....       .-..|+....+  ....|+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~-------~~v~Dl~~~~~--~~~~Dla  175 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHD-------ARVRDLLSDPP--KEPADLA  175 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEE-------EEEE-TTTSHT--TSEESEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcc-------eeEeeeeccCC--CCCcchh
Confidence            47899999999998888877553 35999999999999999887766654432       11223333322  3469999


Q ss_pred             EEccchhhhccCHHHH-HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQA-RCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~-~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..=++|.+    +.. ....-++...++- =++++++|..
T Consensus       176 LllK~lp~l----e~q~~g~g~~ll~~~~~-~~~vVSfPtr  211 (251)
T PF07091_consen  176 LLLKTLPCL----ERQRRGAGLELLDALRS-PHVVVSFPTR  211 (251)
T ss_dssp             EEET-HHHH----HHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred             hHHHHHHHH----HHHhcchHHHHHHHhCC-CeEEEecccc
Confidence            999889887    322 2222233333322 2666676644

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.31  E-value=0.14  Score=51.25  Aligned_cols=106  Identities=18%  Similarity=0.208  Sum_probs=68.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .+++.+||=||..+|....+..+- +-..++|++.|+.+....-....+......   +   ..++...+.+..--+..|
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P---I---L~DA~~P~~Y~~~Ve~VD  147 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP---I---LEDARKPEKYRHLVEKVD  147 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee---e---ecccCCcHHhhhhccccc
Confidence            347899999999999988887653 334799999999887665544443322111   0   111111111111123588


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|++--      ....+.+-+..|+...||+||++++.+
T Consensus       148 viy~DV------AQp~Qa~I~~~Na~~FLk~~G~~~i~i  180 (231)
T COG1889         148 VIYQDV------AQPNQAEILADNAEFFLKKGGYVVIAI  180 (231)
T ss_pred             EEEEec------CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence            887642      234678889999999999999888754

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.15  E-value=0.58  Score=48.02  Aligned_cols=104  Identities=16%  Similarity=0.094  Sum_probs=61.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sFDvV  370 (597)
                      .+++||=||=+.-.-+...+.....+|+.+||++..|+..++.....+....       .+..|+..++|.. .++||++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~-------~~~~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIE-------AVHYDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EE-------EE---TTS---TTTSS-BSEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceE-------EEEecccccCCHHHhcCCCEE
Confidence            4789999984433222222223357999999999999999988888776633       5666777888754 4689999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~  407 (597)
                      ++--.     .+.+.+.-|+......||.-| ..++.+
T Consensus       117 ~TDPP-----yT~~G~~LFlsRgi~~Lk~~g~~gy~~~  149 (243)
T PF01861_consen  117 FTDPP-----YTPEGLKLFLSRGIEALKGEGCAGYFGF  149 (243)
T ss_dssp             EE--------SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred             EeCCC-----CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence            88532     355788899999999998755 444443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2187|consensus

Probab=94.96  E-value=0.031  Score=62.35  Aligned_cols=52  Identities=23%  Similarity=0.263  Sum_probs=44.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE  343 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~  343 (597)
                      ..+..+||+.||+|.+...+++ ++..|+||++++.++..|+.++..++..+-
T Consensus       382 ~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa  433 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNA  433 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccce
Confidence            3568999999999999988774 557999999999999999999888777653

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.86  E-value=0.026  Score=54.31  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHH-HHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIED-CKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~-A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++++|=+|+..=+.=...+..|.+++.-|+.++--++. .+.+...             +...+....+....++||++.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ss-------------i~p~df~~~~~~y~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSS-------------ILPVDFAKNWQKYAGSFDFAA   68 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccccc-------------ccHHHHHHHHHHhhccchhhh
Confidence            46778888876555444566777789888876532211 1112111             112222223333346799999


Q ss_pred             Eccchhhhc-------cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSF-------ESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lF-------es~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |..++.|.=       -+.......+.++.++|||||.|++.+|-.
T Consensus        69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence            998887640       011223567888999999999999998855

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.79  E-value=0.17  Score=55.27  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=35.6

Q ss_pred             CCceeEEEEccchhhhccC----------------------------------HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        364 ALELDLVSCQFCIHYSFES----------------------------------VQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes----------------------------------~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      .++.+++++.++|||+-.-                                  ..|+..+|+.=++-|.|||.++++++.
T Consensus       160 ~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~G  239 (386)
T PLN02668        160 ARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLG  239 (386)
T ss_pred             CCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEec
Confidence            3679999999999997210                                  024566777778889999999998865


Q ss_pred             h
Q psy17742        410 S  410 (597)
Q Consensus       410 ~  410 (597)
                      .
T Consensus       240 r  240 (386)
T PLN02668        240 R  240 (386)
T ss_pred             C
Confidence            4

>PRK10742 putative methyltransferase; Provisional

Probab=94.65  E-value=0.15  Score=52.62  Aligned_cols=42  Identities=19%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      +|||+-+|.|.++..++..|. .|+++|-++.+....+..+..
T Consensus        91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHH
Confidence            899999999999999999986 699999999998877766554

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.58  E-value=0.032  Score=50.45  Aligned_cols=43  Identities=14%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             ceeEEEEccchhhhc--cCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        366 ELDLVSCQFCIHYSF--ESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       366 sFDvVi~~~vLh~lF--es~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +||+|+|..+.-|+.  -..+.+..+++.++++|+|||+||+.--
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            499999988843331  1235688999999999999999999743

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=94.57  E-value=0.18  Score=53.45  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=47.7

Q ss_pred             HHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       275 ~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      +|+.+.+..+...    ++..++|.=||.|+++..+++. +..+|+|+|.++.+++.|+++....
T Consensus         7 Vll~Evl~~L~~~----~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~   67 (305)
T TIGR00006         7 VLLDEVVEGLNIK----PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF   67 (305)
T ss_pred             hhHHHHHHhcCcC----CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence            4666666655332    5679999999999999998765 2368999999999999999987653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.40  E-value=0.15  Score=55.75  Aligned_cols=108  Identities=21%  Similarity=0.304  Sum_probs=70.5

Q ss_pred             CCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCCCCCCceeE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      +.+|||.=+|+|.=++.++..  +...|+.-|+|+.+++..+++..-++... ..     .....|....+......||+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~-----~v~~~DAn~ll~~~~~~fD~  124 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERI-----EVSNMDANVLLYSRQERFDV  124 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCE-----EEEES-HHHHHCHSTT-EEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceE-----EEehhhHHHHhhhccccCCE
Confidence            468999999999988877654  56799999999999999999977666554 11     12233322222123357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      |=.- .+       ..+..+|..+.+.++.||+|.+|..+...+
T Consensus       125 IDlD-Pf-------GSp~pfldsA~~~v~~gGll~vTaTD~a~L  160 (377)
T PF02005_consen  125 IDLD-PF-------GSPAPFLDSALQAVKDGGLLCVTATDTAVL  160 (377)
T ss_dssp             EEE---S-------S--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred             EEeC-CC-------CCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence            9432 11       456679999999999999999998776444

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.38  E-value=0.094  Score=58.58  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             CEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      -.|+|+..|.|+++..+.+..+  -.|+-+ ..+.-+...-.|    +..       +  .-.|.-+.++.-..+||+|.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GLI-------G--~yhDWCE~fsTYPRTYDLlH  432 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GLI-------G--VYHDWCEAFSTYPRTYDLLH  432 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----ccc-------h--hccchhhccCCCCcchhhee
Confidence            4699999999999999987663  122222 122222222111    110       0  01123455655567899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +...|... .+.-++..+|-++-|+|+|||++|+-
T Consensus       433 A~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  433 ADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             hhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence            99887664 44457889999999999999999884

; GO: 0008168 methyltransferase activity

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=94.11  E-value=0.12  Score=51.17  Aligned_cols=100  Identities=12%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      ..+.|||.|+|.++...++. ..+|++++.+|.-...|.++..-.+..+..      ....| .....+  ...|+|+|-
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~e------vv~gD-A~~y~f--e~ADvvicE  103 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWE------VVVGD-ARDYDF--ENADVVICE  103 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceE------EEecc-cccccc--cccceeHHH
Confidence            67999999999999877665 579999999999988888875333322211      22222 223333  347999986


Q ss_pred             cchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      ..=..+.  .+....+++.+.+.||-.|.++-
T Consensus       104 mlDTaLi--~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         104 MLDTALI--EEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HhhHHhh--cccccHHHHHHHHHhhcCCcccc
Confidence            4311111  13445678888889998887753

>PHA01634 hypothetical protein

Probab=94.10  E-value=0.19  Score=46.87  Aligned_cols=47  Identities=13%  Similarity=0.094  Sum_probs=42.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      .+.+|||||.+.|.-++.++..|+..|+++++++...+..++..+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            57899999999999999999999999999999999999888865544

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.09  E-value=1.6  Score=45.18  Aligned_cols=113  Identities=12%  Similarity=0.050  Sum_probs=64.7

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh--ccccccccceeehhhhccCCC---CCCcee
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVFSAELRSQYED---KALELD  368 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~--~~~~~~~~d~F~~dl~e~l~~---~~~sFD  368 (597)
                      ..|+.||||-=.-...+.......++=+|.- ++++.-++.+...+..  .....+..|+. .++.+.+..   ....--
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~pt  160 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQP-AVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPT  160 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCCh-HHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCe
Confidence            4699999986544443322211355555543 3444444445443211  11111112222 222222211   112344


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++++-.++.|+  +.+....+|+.+.+...||+.+++...+.
T Consensus       161 l~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       161 AWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             eeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            77888889997  77889999999999999999999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG2793|consensus

Probab=94.09  E-value=0.2  Score=51.69  Aligned_cols=113  Identities=17%  Similarity=0.048  Sum_probs=64.5

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccc--cccccceeehhhhccCCCCCCc-eeE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEA--RPYRRNVFSAELRSQYEDKALE-LDL  369 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~--~~~~~d~F~~dl~e~l~~~~~s-FDv  369 (597)
                      ..+||++|+|+|.....++......|+..|+..........+ .........  .......+.-+........... ||+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~-~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR-DKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh-hhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            467999999999887777775556899999876654433322 111111100  0000001111100011111122 999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++..++-.-    +....++.-++.+|..+|.+++.++-.
T Consensus       166 ilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  166 ILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             EEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            9999987443    556677888888888888666666544

>KOG3115|consensus

Probab=93.93  E-value=0.11  Score=52.01  Aligned_cols=47  Identities=21%  Similarity=0.300  Sum_probs=38.9

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      ...+.|||||-|+++..++... -.-++|++|-...-+..++|+....
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            3569999999999999988764 3468999999998888888876654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=93.78  E-value=0.52  Score=53.18  Aligned_cols=115  Identities=19%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DK  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~  363 (597)
                      +..+|+|-.||+|+.+....+.    . -..++|.++++.....|+-+.--.+.........++.    +..+..   +.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt----l~~~~~~~~~~  261 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT----LSNPKHDDKDD  261 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc----ccCCcccccCC
Confidence            4569999999999987764321    1 1469999999999999998765554432111011111    222222   23


Q ss_pred             CCceeEEEEccchh---h-----------------hccCHHHH-HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        364 ALELDLVSCQFCIH---Y-----------------SFESVQQA-RCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       364 ~~sFDvVi~~~vLh---~-----------------lFes~~d~-~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .++||+|+++--+.   |                 .+.+.... ..+++.+...|+|||+.-+.+|+.
T Consensus       262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            46799998864332   1                 12222223 789999999999999666666655

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=93.29  E-value=0.18  Score=52.51  Aligned_cols=43  Identities=23%  Similarity=0.371  Sum_probs=38.0

Q ss_pred             EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      +|||+.||.|+...-+...|+..+.++|+++.+++..+.++..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~   44 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN   44 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC
Confidence            5999999999999999888987889999999999888877643

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.17  E-value=0.35  Score=52.06  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=63.5

Q ss_pred             CCCCCEEEEECCC-CChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSG-KGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCG-tG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+++.+|+=+|+| -|..+.++++ .+ .+|+++|.|++-++.|++...+.-...        . ..+..+.+.   +.|
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~--------~-~~~~~~~~~---~~~  230 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINS--------S-DSDALEAVK---EIA  230 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEc--------C-CchhhHHhH---hhC
Confidence            3478999999988 2346677777 46 799999999999999987644321110        0 111222222   239


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |+|+..-.           ...+....+.||+||.+++.-.
T Consensus       231 d~ii~tv~-----------~~~~~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         231 DAIIDTVG-----------PATLEPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             cEEEECCC-----------hhhHHHHHHHHhcCCEEEEECC
Confidence            99987643           3456777889999999988643

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.15  E-value=0.23  Score=48.56  Aligned_cols=41  Identities=22%  Similarity=0.106  Sum_probs=34.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKT  333 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~e  333 (597)
                      ++..|||.-||+|..+......| .+++|+|+++..++.|++
T Consensus       191 ~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             cceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence            68999999999999999888877 589999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.65  E-value=0.41  Score=51.49  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=60.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .+.+|||+|.|.|.-+..+...  -...++.++.|+..-+............. .... ..-+..+ ...++.    -|.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~-td~r-~s~vt~d-Rl~lp~----ad~  185 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK-TDWR-ASDVTED-RLSLPA----ADL  185 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc-CCCC-CCccchh-ccCCCc----cce
Confidence            4567999999988766433221  12456677777654433332222211110 0000 0011111 122332    344


Q ss_pred             EEEccchhhhc--cCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        370 VSCQFCIHYSF--ESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       370 Vi~~~vLh~lF--es~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      +.+..++|-+.  ..+..+...++.+..++.|||.|++.-+....-+
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf  232 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF  232 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence            44444444432  2334455688999999999999999877664333

>PRK11524 putative methyltransferase; Provisional

Probab=92.63  E-value=0.31  Score=50.95  Aligned_cols=45  Identities=20%  Similarity=0.019  Sum_probs=40.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      ++..|||--||+|..+....+.| .+++|+|++++.++.|++|+..
T Consensus       208 ~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        208 PGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence            68999999999999999887777 6899999999999999999754

>KOG1122|consensus

Probab=92.62  E-value=0.71  Score=50.72  Aligned_cols=114  Identities=18%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC--CCC
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED--KAL  365 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~--~~~  365 (597)
                      +.++.||||+++..|+=+.+++..  +-..|++.|.+..-+...+.++...+..+-.      ....|.. .++.  -.+
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~nti------v~n~D~~-ef~~~~~~~  311 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTI------VSNYDGR-EFPEKEFPG  311 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceE------EEccCcc-cccccccCc
Confidence            457899999999999866554432  2247999999999999999988887765432      1112211 1210  112


Q ss_pred             ceeEEEE----cc--chhh-----hccCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        366 ELDLVSC----QF--CIHY-----SFESV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       366 sFDvVi~----~~--vLh~-----lFes~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +||-|+.    +.  ++.-     ...+.       .-.+++|-.+..++++||+|+-+|-.-
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            6998874    32  1100     00111       124678889999999999999877543

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.57  E-value=1.5  Score=42.53  Aligned_cols=60  Identities=22%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             eeehh---hhccCCCCCCceeEEEEccchhh---------hccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        351 VFSAE---LRSQYEDKALELDLVSCQFCIHY---------SFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       351 ~F~~d---l~e~l~~~~~sFDvVi~~~vLh~---------lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .+..|   +.+.+....++||.|+-+|--.-         +-.+..-+..+|+.+..+|+++|.+.+|..+.
T Consensus        57 ~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   57 LHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             ccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            44444   33334334567999999865221         00122346789999999999999999987544

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.01  E-value=1.8  Score=43.93  Aligned_cols=116  Identities=13%  Similarity=0.064  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.++.||||-.|.+...+.+.+ ...+++.|+++..++.|.+.....+...+..     ....|....+... ..+|+|
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~-----vr~~dgl~~l~~~-d~~d~i   89 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERID-----VRLGDGLAVLELE-DEIDVI   89 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEE-----EeccCCccccCcc-CCcCEE
Confidence            45669999999999999988776 5689999999999999999988876654331     1112212233332 258888


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe-CChhHHHHHHhh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV-PDSNQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~-pn~~~i~~~l~~  419 (597)
                      +..++=.      .-...+|.+-...|+.==+||+.- .+...++..+..
T Consensus        90 vIAGMGG------~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~  133 (226)
T COG2384          90 VIAGMGG------TLIREILEEGKEKLKGVERLILQPNIHTYELREWLSA  133 (226)
T ss_pred             EEeCCcH------HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHh
Confidence            6654321      345677888777777444555543 233556655554

>PRK13699 putative methylase; Provisional

Probab=91.32  E-value=0.59  Score=47.43  Aligned_cols=47  Identities=15%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      ++..|||--||+|..+....+.| ..++|+|+++...+.|.+|+....
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHHH
Confidence            67899999999999999887777 589999999999999999986643

>KOG4058|consensus

Probab=91.01  E-value=1.6  Score=41.90  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=39.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      +..+.+|||+|.|+.....++.|...-+|+++++-.+..++-+.-..
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~  118 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRA  118 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHH
Confidence            45789999999999999888888668899999999888777654333

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.95  E-value=0.92  Score=49.15  Aligned_cols=104  Identities=21%  Similarity=0.304  Sum_probs=70.0

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ..+|||.=+|+|.=.+.++.. +..+++.-|+||.+++..+++...+......      .+..|....+......||+|=
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~------v~n~DAN~lm~~~~~~fd~ID  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAE------VINKDANALLHELHRAFDVID  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccce------eecchHHHHHHhcCCCccEEe
Confidence            578999999999988776644 4448999999999999999988766222221      333231111112124688883


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .- .+       ..+.-++..+.+.++.||++-+|-.+.
T Consensus       127 iD-PF-------GSPaPFlDaA~~s~~~~G~l~vTATD~  157 (380)
T COG1867         127 ID-PF-------GSPAPFLDAALRSVRRGGLLCVTATDT  157 (380)
T ss_pred             cC-CC-------CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence            31 11       334567888888889999999987655

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=90.94  E-value=1.2  Score=44.61  Aligned_cols=109  Identities=20%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHH----HHHHHH--HHhhhhhccccccccceeehhhhccCCC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSI----EDCKTR--YEELKRKEEARPYRRNVFSAELRSQYED  362 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mI----e~A~er--~~~~~~~~~~~~~~~d~F~~dl~e~l~~  362 (597)
                      +++.+|+|+=.|.|.++.-+... | -..|++.=..+...    ...+.+  ..+....+..      .+...+....+ 
T Consensus        47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e------~~~~~~~A~~~-  119 (238)
T COG4798          47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVE------VIGKPLVALGA-  119 (238)
T ss_pred             CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhh------hhCCcccccCC-
Confidence            37899999999999999877653 1 12566664443311    101100  0000000000      11111111111 


Q ss_pred             CCCceeEEEEccc---hhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        363 KALELDLVSCQFC---IHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       363 ~~~sFDvVi~~~v---Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                       ....|++.....   ||.-+-+.....++...+++.|||||.+++.-
T Consensus       120 -pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         120 -PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             -CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence             234666655332   33323344678899999999999999998864

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=90.91  E-value=4.6  Score=43.87  Aligned_cols=47  Identities=13%  Similarity=0.216  Sum_probs=36.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc---------CCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING---------GVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~---------g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      .+..+++||.|+|.++..+++.         ...+|.-|++|+.....=++++...
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            3578999999999988876542         2468999999999888777666554

>KOG2671|consensus

Probab=90.89  E-value=0.25  Score=52.94  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=73.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHH-------HHHHHhhhhhccccccccceeehhhhc-cCCC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDC-------KTRYEELKRKEEARPYRRNVFSAELRS-QYED  362 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A-------~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~  362 (597)
                      .+|+-|+|=-.|||+++...+..| +.|+|.||+-.++...       +.++++.+...    .+-+.+.+|... ++..
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~----~fldvl~~D~sn~~~rs  281 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS----QFLDVLTADFSNPPLRS  281 (421)
T ss_pred             CCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcc----hhhheeeecccCcchhh
Confidence            378999999999999999888888 4999999999988743       23333333221    122455555332 2322


Q ss_pred             CCCceeEEEEcc-------------------------chhhhccC-----HHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        363 KALELDLVSCQF-------------------------CIHYSFES-----VQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       363 ~~~sFDvVi~~~-------------------------vLh~lFes-----~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                       ...||.|+|--                         .-|+- ..     ..-...+|.-.++.|..||++++-.|..
T Consensus       282 -n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p-~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  282 -NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYP-STEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             -cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCC-ccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence             45799999931                         01110 00     0123456667789999999999987743

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=90.88  E-value=0.42  Score=43.27  Aligned_cols=31  Identities=19%  Similarity=0.083  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADI  323 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDi  323 (597)
                      +.....|||||+|.+..-|...|+ .=.|+|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence            456799999999999998888886 5678886

; GO: 0008168 methyltransferase activity

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=90.81  E-value=0.78  Score=46.07  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             CCCEEEEECCCCChhHHHHHh----c-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN----G-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK--A  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~----~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~--~  364 (597)
                      ++..|+++|.-.|+-+..++.    . +..+|+||||........  .........+.....++....+........  .
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            468999999999998776653    2 346999999964432211  111111111211111222222211221111  1


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ..-.+|+. .+-|..    ....+.|+....+|++|+++|+.-
T Consensus       110 ~~~vlVil-Ds~H~~----~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  110 PHPVLVIL-DSSHTH----EHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             -SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             CCceEEEE-CCCccH----HHHHHHHHHhCccCCCCCEEEEEe
Confidence            12233333 333332    455678888999999999999843

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2198|consensus

Probab=90.65  E-value=1.2  Score=48.17  Aligned_cols=121  Identities=18%  Similarity=0.159  Sum_probs=68.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCC-----CEEEEEeCChHHHHHHHHHHHhhhhhcccc-ccccceeehhhhccC-CCC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGV-----KHVVFADIASVSIEDCKTRYEELKRKEEAR-PYRRNVFSAELRSQY-EDK  363 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~-----~~V~GIDiS~~mIe~A~er~~~~~~~~~~~-~~~~d~F~~dl~e~l-~~~  363 (597)
                      .++.+|||+++..|+=+..++....     ..|++-|.+..-+.............+... ..-...|........ +..
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE  233 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence            4789999999999997766554321     279999999987776665543222211100 000001111110011 112


Q ss_pred             CCceeEEEEc-----cc-hhh---hccC----H------HHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        364 ALELDLVSCQ-----FC-IHY---SFES----V------QQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       364 ~~sFDvVi~~-----~v-Lh~---lFes----~------~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      ...||-|+|-     .+ +-.   +|..    .      .-...+|.+..++||+||.+|-+|-+-.
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence            3469988872     00 100   0000    0      1124689999999999999999986653

>KOG0024|consensus

Probab=90.10  E-value=0.76  Score=49.06  Aligned_cols=105  Identities=18%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCC
Q psy17742        290 LGSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKA  364 (597)
Q Consensus       290 ~~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~  364 (597)
                      .+.+.+||=+|+|. |..+..+++. |..+|+.+|+++.-|+.|++. .........    ...-..+   ..+..-. .
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~----~~~~~~~~~~~v~~~~g-~  240 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSS----HKSSPQELAELVEKALG-K  240 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeecc----ccccHHHHHHHHHhhcc-c
Confidence            34789999999997 6666666654 778999999999999999983 221111100    0000011   1111111 1


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ..+|+++-...++          ..++.....||+||.+++.....
T Consensus       241 ~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  241 KQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             cCCCeEEEccCch----------HHHHHHHHHhccCCEEEEeccCC
Confidence            2488887654442          34555677899999988765544

>KOG1253|consensus

Probab=90.01  E-value=0.22  Score=55.45  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=75.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||.=|++|..++.++..  ++.+|++-|.++..|+..+++..-++......+...|.-.  +.-..+.....||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~--lM~~~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANV--LMYEHPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHH--HHHhccccccccce
Confidence            5689999999999999998764  5779999999999999998887666444322111111100  11111222356999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      |-.-        .-.....||..+.+.++.||.|.+|..+.-.+
T Consensus       187 IDLD--------PyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL  222 (525)
T KOG1253|consen  187 IDLD--------PYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL  222 (525)
T ss_pred             EecC--------CCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence            8432        11345578999999999999999998765433

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.57  E-value=0.97  Score=48.81  Aligned_cols=110  Identities=15%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||.+|||. |..+..+++. |...++++|.++..++.+++..... .....   ..+.+...+. .+.. ...+|+
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~-vi~~~---~~~~~~~~l~-~~~~-~~~~D~  257 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE-TINFE---EVDDVVEALR-ELTG-GRGPDV  257 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE-EEcCC---cchHHHHHHH-HHcC-CCCCCE
Confidence            568899999987 7777777665 4446999999999999888753211 00000   0000111111 1211 124898


Q ss_pred             EEEccch-------hh----hccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCI-------HY----SFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vL-------h~----lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+..-.-       ++    .+....+....+..+.++|++||.++...
T Consensus       258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            8774211       11    11111233557888999999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=89.52  E-value=0.7  Score=46.77  Aligned_cols=61  Identities=16%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHH--Hh-cCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKW--IN-GGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       272 vKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~l--a~-~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      +.+.+.++.+..+...    .+.++-|-+||.|.++--+  +. .....|+|-||++.+++.|++++.
T Consensus        35 LAsEi~qR~l~~l~~~----~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   35 LASEIFQRALHYLEGK----GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHHHHHHHCTSSS-----S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCC----CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            5666777766654332    5689999999999987653  33 235789999999999999998653

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=89.28  E-value=0.67  Score=47.34  Aligned_cols=86  Identities=23%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             CCCCCEEEEECCCCChhHHHH--HhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCC
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKW--INGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKA  364 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~l--a~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~  364 (597)
                      ++++.++||||.|.--.-.-+  ...| ..++|.|+++.+++.|+.....+......   ++-....+   +...+....
T Consensus        76 ~~~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~---I~lr~qk~~~~if~giig~n  151 (292)
T COG3129          76 PGKNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERA---IRLRRQKDSDAIFNGIIGKN  151 (292)
T ss_pred             CcCceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhh---eeEEeccCcccccccccccc
Confidence            356789999998854322211  1234 48899999999999999887665322111   00011111   222333335


Q ss_pred             CceeEEEEccchhhh
Q psy17742        365 LELDLVSCQFCIHYS  379 (597)
Q Consensus       365 ~sFDvVi~~~vLh~l  379 (597)
                      +.||+++|+--+|-.
T Consensus       152 E~yd~tlCNPPFh~s  166 (292)
T COG3129         152 ERYDATLCNPPFHDS  166 (292)
T ss_pred             ceeeeEecCCCcchh
Confidence            679999999988764

>KOG1099|consensus

Probab=88.95  E-value=0.66  Score=47.33  Aligned_cols=104  Identities=23%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             CCEEEEECCCCChhHHHHHhcC--------C--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhc
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG--------V--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRS  358 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g--------~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e  358 (597)
                      -.+|+||+...|.|+..+.+.-        .  ..+++||+-+-+        .-.+..    ...+|+-...    +.+
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~GV~----qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIEGVI----QLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccCceE----EeecccCCHhHHHHHHH
Confidence            3679999999999988765421        1  239999986532        000100    0001121111    223


Q ss_pred             cCCCCCCceeEEEEccc-----hhhhcc--CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        359 QYEDKALELDLVSCQFC-----IHYSFE--SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       359 ~l~~~~~sFDvVi~~~v-----Lh~lFe--s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .|.  ..+.|+|+|-.+     +|-+-+  ..+-+..+|.-...+|||||.|+.-+...
T Consensus       110 hfg--gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg  166 (294)
T KOG1099|consen  110 HFG--GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG  166 (294)
T ss_pred             HhC--CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence            333  257999999654     665400  11234566777789999999999877665

>KOG2539|consensus

Probab=88.47  E-value=1.9  Score=48.03  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=67.4

Q ss_pred             CCCEEEEECCCCCh--hHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCce
Q psy17742        292 SPIKVLDMGSGKGG--DMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~--~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sF  367 (597)
                      .+..++|+|.|.|.  ++...+-.+ ...|+.||.|..|........++.... ....+....|..   ..++.. ...|
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~-g~~~v~~~~~~r---~~~pi~~~~~y  275 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHI-GEPIVRKLVFHR---QRLPIDIKNGY  275 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhc-Cchhccccchhc---ccCCCCcccce
Confidence            45678888887654  333322222 467999999999999988876651111 000001112221   122222 2359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHH-HHhccCCcEEEEEeCCh
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNA-AECLKPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i-~rlLKPGG~fIit~pn~  410 (597)
                      |+|+|.+.+|++ .+........+++ .+..++||++++.-...
T Consensus       276 Dlvi~ah~l~~~-~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  276 DLVICAHKLHEL-GSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             eeEEeeeeeecc-CCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence            999999999986 4444444455444 55668899888865444

>KOG1562|consensus

Probab=88.46  E-value=1.7  Score=46.00  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sF  367 (597)
                      .+++||=||-|.|+.++...++ .+..+.-+|+....++..++-.+......... .. .....|   +.+...  .++|
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~-~v-~l~iGDG~~fl~~~~--~~~~  196 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGK-KV-KLLIGDGFLFLEDLK--ENPF  196 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCC-ce-EEEeccHHHHHHHhc--cCCc
Confidence            4688999999999999876554 35689999999999999988777654331110 00 011222   233333  3569


Q ss_pred             eEEEEccchhhhccCH-HHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESV-QQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~-~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|+.-..=--. ... --.+.++.-+.+.||+||+++..-
T Consensus       197 dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  197 DVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             eEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            999864220000 000 123567888999999999998765

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=88.12  E-value=9.2  Score=39.74  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHH-Hhhhhhccccccccceeehhhhc---cCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRY-EELKRKEEARPYRRNVFSAELRS---QYED  362 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~-~~~~~~~~~~~~~~d~F~~dl~e---~l~~  362 (597)
                      .+...+|+|+|+..-+..+++    .+ ...++.+|+|...+....+.+ .+.......      -+..+...   .++ 
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~------~l~~~~~~~La~~~-  150 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN------ALCGDYELALAELP-  150 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe------ehhhhHHHHHhccc-
Confidence            367899999999876555443    33 358999999999887544433 222211110      22222111   222 


Q ss_pred             CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ..+.==.++...++..+  +.++...||..+...|+||-+|++-+-
T Consensus       151 ~~~~Rl~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         151 RGGRRLFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             CCCeEEEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEEEecc
Confidence            21222223334446665  667888999999999999999988663

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=87.35  E-value=1.2  Score=45.58  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=40.9

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHH---HHHHhhhhh-----ccccccccceeehhhhccCCCCCC
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCK---TRYEELKRK-----EEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~---er~~~~~~~-----~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      .+|||.=+|-|.++.-++..|. +|+|++-|+.+-...+   +++......     .+.     ..+..+..+.+.....
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri-----~l~~~d~~~~L~~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRI-----QLIHGDALEYLRQPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHE-----EEEES-CCCHCCCHSS
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCC-----EEEcCCHHHHHhhcCC
Confidence            4899999999999999888885 8999999998755444   444332111     111     1334443333443346


Q ss_pred             ceeEEEEccch
Q psy17742        366 ELDLVSCQFCI  376 (597)
Q Consensus       366 sFDvVi~~~vL  376 (597)
                      +||+|+.--++
T Consensus       151 s~DVVY~DPMF  161 (234)
T PF04445_consen  151 SFDVVYFDPMF  161 (234)
T ss_dssp             --SEEEE--S-
T ss_pred             CCCEEEECCCC
Confidence            79999985444

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=87.28  E-value=2.4  Score=44.95  Aligned_cols=62  Identities=18%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        274 SMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       274 s~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      .+|+.+.+..+...    ++...||.--|.|+++..++...  ..+++|+|-++.+|+.|+++.....
T Consensus         9 pVLl~E~i~~L~~~----~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~   72 (314)
T COG0275           9 PVLLNEVVELLAPK----PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD   72 (314)
T ss_pred             chHHHHHHHhcccC----CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence            35777777765443    67899999999999999988765  3579999999999999999876543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.61  E-value=2.6  Score=45.39  Aligned_cols=100  Identities=20%  Similarity=0.103  Sum_probs=63.4

Q ss_pred             CCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCceeE
Q psy17742        293 PIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELDL  369 (597)
Q Consensus       293 ~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFDv  369 (597)
                      +.+|+=+|||. |..+..+++ .|...|+.+|+++.-++.|++........+..    . . ... ....+.. ...||+
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~----~-~-~~~~~~~~~t~-g~g~D~  241 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS----E-D-DAGAEILELTG-GRGADV  241 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc----c-c-cHHHHHHHHhC-CCCCCE
Confidence            34899999998 666555554 46789999999999999998854332111110    0 0 000 0001111 125999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+-.-.          ...++..+.++++|||.+++.-..
T Consensus       242 vie~~G----------~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         242 VIEAVG----------SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             EEECCC----------CHHHHHHHHHHhcCCCEEEEEecc
Confidence            876543          124788899999999999876543

>KOG1501|consensus

Probab=86.46  E-value=0.88  Score=50.25  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=43.5

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK  341 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~  341 (597)
                      ..-|||||.|||.++......|...|++++.=..|++.|++-..+++..
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S  115 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS  115 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence            4579999999999999999999889999999999999999987776554

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=84.61  E-value=4.3  Score=41.97  Aligned_cols=98  Identities=18%  Similarity=0.110  Sum_probs=57.7

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+||..|+|. |..+..+++....+|++++.++...+.+++..    ...... .........+ ....  .+.+|+|
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~~~~~~-~~~~~~~~~~-~~~~--~~~~D~v  236 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----ADEVLN-SLDDSPKDKK-AAGL--GGGFDVI  236 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----CCEEEc-CCCcCHHHHH-HHhc--CCCceEE
Confidence            567899988763 66777766643357999999999888775421    110000 0000000001 1111  2459998


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +.....          ...+..+.++|++||.++...
T Consensus       237 id~~g~----------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         237 FDFVGT----------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence            764211          236777889999999998754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG1596|consensus

Probab=84.56  E-value=3.5  Score=42.57  Aligned_cols=101  Identities=24%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHH----HHHHHHHHHhhhhhccccccccceeehhhhccCCCCC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVS----IEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKA  364 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~m----Ie~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~  364 (597)
                      .++.+||=||++.|....+..+. | -.-|++++.|..+    +..|++|-+-..       ++.|.-..   ..+...-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiP-------IiEDArhP---~KYRmlV  224 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIP-------IIEDARHP---AKYRMLV  224 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCcee-------eeccCCCc---hheeeee
Confidence            37899999999999987776553 2 2369999999754    444554422111       11111100   0000001


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..|+|++-  +    ...++.+.+.-|+.-.||+||.|++++
T Consensus       225 gmVDvIFaD--v----aqpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  225 GMVDVIFAD--V----AQPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eeEEEEecc--C----CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence            236666553  1    233566777889999999999999976

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=84.45  E-value=3  Score=47.49  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhh-hhccccccccc----eeehh----hhccC
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELK-RKEEARPYRRN----VFSAE----LRSQY  360 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~-~~~~~~~~~~d----~F~~d----l~e~l  360 (597)
                      ++.+||=+|||. |..+...++. |. .|+++|.++.-++.+++.-...- ......-....    ....+    ....+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            689999999997 5455555544 54 89999999999988877321100 00000000000    00001    00111


Q ss_pred             CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ...-+.+|+|+..-....-    ..+..+.+++.+.+||||.++..-.
T Consensus       243 ~~~~~gaDVVIetag~pg~----~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGK----PAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcc----cCcchHHHHHHHhcCCCCEEEEEcc
Confidence            1111359999886543211    2233345999999999999876543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.08  E-value=55  Score=35.10  Aligned_cols=208  Identities=13%  Similarity=0.099  Sum_probs=109.4

Q ss_pred             CEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccc-cc-----ccceeehhhhccCCCCCC
Q psy17742        294 IKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR-PY-----RRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       294 ~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~-~~-----~~d~F~~dl~e~l~~~~~  365 (597)
                      .+|-=||+|+  .+++..++..|+ .|+..|++++.++.++.+........... ..     -...+..++.+.+    .
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av----~   82 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV----A   82 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh----c
Confidence            5688899995  345566777785 99999999999887766544321110000 00     0001111111111    2


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      ..|+|+-.     +.+..+-...+++++-+.++|+. ++.+.-+.-.+ ..+...  ......+.-.+|-++.       
T Consensus        83 ~aDlViEa-----vpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~-s~la~~--~~~p~R~~g~HffnP~-------  146 (321)
T PRK07066         83 DADFIQES-----APEREALKLELHERISRAAKPDA-IIASSTSGLLP-TDFYAR--ATHPERCVVGHPFNPV-------  146 (321)
T ss_pred             CCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCH-HHHHHh--cCCcccEEEEecCCcc-------
Confidence            36777654     34666777889999999999987 33333233222 222211  1122445556665421       


Q ss_pred             ccceeeeccccccccccCCC---HHHHHHHHHHcCCeEEEE-EecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHH
Q psy17742        446 GAKYDFNLEGVVNCPEFLVY---FPLLERIAGEFGLKRILK-ENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKA  521 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~---~e~L~~La~eaGfelV~~-~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~  521 (597)
                         |.--|-+.|.  ---.+   .+.+.++++..|.+.|.. +.-..|.-+.....   -+.+-+..++    .|..|.+
T Consensus       147 ---~~~pLVEVv~--g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a---~~~EA~~lv~----eGvas~e  214 (321)
T PRK07066        147 ---YLLPLVEVLG--GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEA---LWREALHLVN----EGVATTG  214 (321)
T ss_pred             ---ccCceEEEeC--CCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHH---HHHHHHHHHH----hCCCCHH
Confidence               1011111111  00112   345678889999999877 57777766554321   1222333333    3567888


Q ss_pred             HHHHHHhhceeEEE
Q psy17742        522 EWEAITLYQVFAFE  535 (597)
Q Consensus       522 E~E~~~LY~~FvF~  535 (597)
                      +-+.+ +-..+-|+
T Consensus       215 dID~a-~~~g~g~r  227 (321)
T PRK07066        215 EIDDA-IRFGAGIR  227 (321)
T ss_pred             HHHHH-HHhCCCCC
Confidence            87766 33344444

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=83.71  E-value=2  Score=45.71  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      |+.+.+..+..    .++..+||.=-|.|+++..+++. +..+|+|+|.++.+++.|++++..
T Consensus         8 ll~Evl~~L~~----~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~   66 (310)
T PF01795_consen    8 LLKEVLEALNP----KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK   66 (310)
T ss_dssp             THHHHHHHHT------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC
T ss_pred             cHHHHHHhhCc----CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh
Confidence            55555554432    26789999999999999998864 337999999999999999876543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=83.49  E-value=1.7  Score=46.23  Aligned_cols=41  Identities=20%  Similarity=0.368  Sum_probs=34.7

Q ss_pred             ceeEEEEccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        366 ELDLVSCQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       366 sFDvVi~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ..|+|...|.++-+| ++...-.+||.++...++||..|++.
T Consensus       200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence            478999999998887 45567789999999999999988775

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=82.78  E-value=12  Score=39.78  Aligned_cols=169  Identities=15%  Similarity=0.055  Sum_probs=93.8

Q ss_pred             CEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhc--cccccccceeehhhhccCCCC---CCc
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKE--EARPYRRNVFSAELRSQYEDK---ALE  366 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~--~~~~~~~d~F~~dl~e~l~~~---~~s  366 (597)
                      ..|+-||||-  ++..+.-.+  ...|+-+|. |+.++.=++.+.+.+...  ....+..+++..+....+...   ...
T Consensus        94 ~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~  170 (297)
T COG3315          94 RQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR  170 (297)
T ss_pred             cEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence            5699999984  333322111  136777775 445555555566555321  111122334434433333321   122


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcc
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFG  446 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG  446 (597)
                      -=++++-+++.|+  +++...++|..|..++.||-.+++..........+.+...   -+..+......         .|
T Consensus       171 pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~  236 (297)
T COG3315         171 PTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPA---ARKTMRGEDLD---------RG  236 (297)
T ss_pred             CeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchh---hhhhccccccc---------cc
Confidence            3478888889998  6788999999999999999999988764444433322100   00000000000         00


Q ss_pred             cceeeeccccccccccC-CCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742        447 AKYDFNLEGVVNCPEFL-VYFPLLERIAGEFGLKRILKENFRSFYL  491 (597)
Q Consensus       447 ~~Y~F~L~d~Vn~pEYl-v~~e~L~~La~eaGfelV~~~~F~ef~~  491 (597)
                                  -+.|. ..+.++...+.+.|+..+......+...
T Consensus       237 ------------e~~~~~~~~~e~~~~l~~~g~~~~~~~~~~~~~~  270 (297)
T COG3315         237 ------------ELVYFGDDPAEIETWLAERGWRSTLNRTTEDLAA  270 (297)
T ss_pred             ------------cceeccCCHHHHHHHHHhcCEEEEecCCcHHHHH
Confidence                        01122 3478899999999999988764444443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=82.65  E-value=3.3  Score=43.80  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|||. |..+..+++. |...|+++|.+++-++.+++.-...-..         .-..+..+ +....+.+|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~---------~~~~~~~~-~~~~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVN---------PQNDDLDH-YKAEKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEec---------CCcccHHH-HhccCCCCCE
Confidence            467899898863 4455555554 5557999999999888887632111000         00001111 1111235898


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+..-.-          ...+..+.++|++||.++..-
T Consensus       239 vid~~G~----------~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        239 SFEVSGH----------PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             EEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence            8764221          135667778999999998754

>KOG2920|consensus

Probab=81.01  E-value=1.3  Score=46.51  Aligned_cols=38  Identities=24%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIE  329 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe  329 (597)
                      .+++|||+|||.|...+.....+...+...|.+...++
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             cCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            57899999999999888877777668899999888763

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.64  E-value=8.2  Score=38.11  Aligned_cols=98  Identities=21%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+||-+|+|. |..+..+++....+|++++.++...+.+++...........     ..+...+.  . ...+.+|+|
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~--~-~~~~~~d~v  205 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKE-----EDLEEELR--L-TGGGGADVV  205 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-----CCHHHHHH--H-hcCCCCCEE
Confidence            578999999986 65666666543368999999988777765431110000000     00111111  1 112459999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +....-       .   ..+..+.+.|+++|.++...
T Consensus       206 i~~~~~-------~---~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         206 IDAVGG-------P---ETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EECCCC-------H---HHHHHHHHhcccCCEEEEEc
Confidence            864221       0   34666778899999998754

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=80.23  E-value=2.8  Score=44.52  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             EEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        296 VLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       296 VLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ||||-||.|++..-+...|+.-+.++|+++..++.-+.++.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~   41 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG   41 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence            68999999999999998997667789999998888777654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	597
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		4e-69
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		7e-33
2vdw_A	302	Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12		2e-05

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score =  259 bits (661), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 139/316 (43%), Positives = 188/316 (59%), Gaps = 47/316 (14%)
Query: 260 SRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVV 319
           SRI Y+RNFNNW KS+LI EFL + +  Q     I VLD+G GKGGD+LKW  G +  +V
Sbjct: 4   SRIFYLRNFNNWMKSVLIGEFLEKVR--QKKKRDITVLDLGCGKGGDLLKWKKGRINKLV 61
Query: 320 FADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----------LRSQYEDKALELDL 369
             DIA VS++ C+ RYE++K + ++      +FSAE          L  ++ D  +  D+
Sbjct: 62  CTDIADVSVKQCQQRYEDMKNRRDSE----YIFSAEFITADSSKELLIDKFRDPQMCFDI 117
Query: 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDV 429
            SCQF  HYSFES +QA  ML+NA E L PGG+F+GT P+S +++ R    ++ SFGN++
Sbjct: 118 CSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEI 177
Query: 430 YQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSF 489
           Y V+  F      PLFG KYDFNLEGVV+ PEFLVYFPLL  +A ++ +K + K+ F  F
Sbjct: 178 YTVK--FQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEF 235
Query: 490 YLRKIKEHAGLNLLRKMNALEGHHK-----------------------------VGTLSK 520
           Y  KIK +    LL++M ALE +                               +GTLSK
Sbjct: 236 YEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSK 295
Query: 521 AEWEAITLYQVFAFEK 536
           +EWEA ++Y VFAFEK
Sbjct: 296 SEWEATSIYLVFAFEK 311

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 40/308 (12%)
Query: 237 GLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKV 296
           G  + + EHYN  +  G E R+ S+ + +RN NN+ K+ LI  +  R  S         V
Sbjct: 18  GKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDS---------V 68
Query: 297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL 356
           LD+G GKGGD+LK+   G+      DIA VSI D + R   +KR+          F    
Sbjct: 69  LDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR----------FKVFF 118
Query: 357 RSQ-----YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
           R+Q     + D   E D++S QF  HY+F + +      +N A  L+PGG+F+ TVP  +
Sbjct: 119 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178
Query: 412 QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK-YDFN-LEGVVNCPEFLVYFPLL 469
            I+ RY++ + +   ND Y+++   +     P+   + Y F  L+ V NC E+ V F  +
Sbjct: 179 VILERYKQGRMS---NDFYKIE--LEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRM 233
Query: 470 ERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLY 529
                  GL  + ++ F  FY     E  G    R+   L     +G L++ E E + +Y
Sbjct: 234 VDGFKRLGLSLVERKGFIDFY-----EDEG----RRNPELSKKMGLGCLTREESEVVGIY 284
Query: 530 QVFAFEKV 537
           +V  F K+
Sbjct: 285 EVVVFRKL 292

>pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of The Vaccinia Virus Mrna Capping Enzyme Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 255 ELRKNSRIVYMRN---------FNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGG 305
           + R N  + Y  N          +N+ K++LI  + +  K+     +  KVL +  G G 
Sbjct: 4   KFRLNPEVSYFTNKRTRGPLGILSNYVKTLLISMYCS--KTFLDDSNKRKVLAIDFGNGA 61
Query: 306 DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL 365
           D+ K+  G +  +V  D  + +I     RY +L    + + Y+ +     +RS     ++
Sbjct: 62  DLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV 121
Query: 366 -------ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
                  + +++  QF IHYSF     A  M  N +E    GG  + T  D +++
Sbjct: 122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVM-NNLSELTASGGKVLITTMDGDKL 175

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	597
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	8e-80
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	3e-79
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-71
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	6e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-06
3lcc_A	235	Putative methyl chloride transferase; halide methy	2e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	3e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	3e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	5e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	5e-06
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	7e-06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	9e-06
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	6e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	9e-05
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	9e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-04
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	3e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	5e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	9e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	9e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  253 bits (646), Expect = 8e-80
 Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 28/300 (9%)

Query: 240 QTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDM 299
           + + EHYN  +  G E R+ S+ + +RN NN+ K+ LI  +  R            VLD+
Sbjct: 21  EEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGD---------SVLDL 71

Query: 300 GSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ 359
           G GKGGD+LK+   G+      DIA VSI D + R   +KR+ +     ++ +      +
Sbjct: 72  GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-----GR 126

Query: 360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419
           + D   E D++S QF  HY+F + +      +N A  L+PGG+F+ TVP  + I+ RY++
Sbjct: 127 HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ 186

Query: 420 HQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNL-EGVVNCPEFLVYFPLLERIAGEFGL 478
            +     ND Y+++ L      P     +Y F L + V NC E+ V F  +       GL
Sbjct: 187 GR---MSNDFYKIE-LEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGL 242

Query: 479 KRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVK 538
             + ++ F  FY  + + +    L +KM        +G L++ E E + +Y+V  F K+ 
Sbjct: 243 SLVERKGFIDFYEDEGRRNP--ELSKKM-------GLGCLTREESEVVGIYEVVVFRKLV 293

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  251 bits (642), Expect = 3e-79
 Identities = 135/315 (42%), Positives = 184/315 (58%), Gaps = 39/315 (12%)

Query: 259 NSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHV 318
            SRI Y+RNFNNW KS+LI EFL + +  +     I VLD+G GKGGD+LKW  G +  +
Sbjct: 3   QSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRD--ITVLDLGCGKGGDLLKWKKGRINKL 60

Query: 319 VFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE------LRSQYEDKALELDLVSC 372
           V  DIA VS++ C+ RYE++K + ++       F         L  ++ D  +  D+ SC
Sbjct: 61  VCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120

Query: 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQV 432
           QF  HYSFES +QA  ML+NA E L PGG+F+GT P+S +++ R    ++ SFGN++Y V
Sbjct: 121 QFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180

Query: 433 QCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLR 492
           +  F      PLFG KYDFNLEGVV+ PEFLVYFPLL  +A ++ +K + K+ F  FY  
Sbjct: 181 K--FQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEE 238

Query: 493 KIKEHAGLNLLRKMNALE-----------------------------GHHKVGTLSKAEW 523
           KIK +    LL++M ALE                                 +GTLSK+EW
Sbjct: 239 KIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEW 298

Query: 524 EAITLYQVFAFEKVK 538
           EA ++Y VFAFEK +
Sbjct: 299 EATSIYLVFAFEKQQ 313

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  231 bits (591), Expect = 1e-71
 Identities = 56/309 (18%), Positives = 114/309 (36%), Gaps = 24/309 (7%)

Query: 243 AEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSG 302
           A+ +     V     K +R   +   +N+ K++LI  + +  K+     +  KVL +  G
Sbjct: 2   ADKFRLNPEVSYFTNKRTRG-PLGILSNYVKTLLISMYCS--KTFLDDSNKRKVLAIDFG 58

Query: 303 KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR---------RNVFS 353
            G D+ K+  G +  +V  D  + +I     RY +L    + + Y+          + F 
Sbjct: 59  NGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFV 118

Query: 354 AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
           + +R  +     + +++  QF IHYSF     A  ++ N +E    GG  + T  D +++
Sbjct: 119 SSVREVFYFG--KFNIIDWQFAIHYSFHPRHYAT-VMNNLSELTASGGKVLITTMDGDKL 175

Query: 414 MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-NCPEFLVYFPLLERI 472
                +       N           S           +N   +     E+++    + R+
Sbjct: 176 SKLTDKKTFIIHKNLPSSEN---YMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRV 232

Query: 473 AGEFGLKRILKENFRSFYLRKIKEHAGL-NLLRKMNALEGHH-KVGTLSKAEWE---AIT 527
             E+G   +   +F +   R  K   G   +  + +         G +     +    ++
Sbjct: 233 FNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLS 292

Query: 528 LYQVFAFEK 536
            Y V+ F K
Sbjct: 293 YYVVYVFSK 301

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 57.0 bits (137), Expect = 4e-09
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 17/161 (10%)

Query: 266 RNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGG---DMLKWI----NGGVKHV 318
           +    +    L         +     S IK+L +G G G     +L  +     G   + 
Sbjct: 30  QCMQEFMDKKLPGIIGRIGDTK----SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85

Query: 319 VFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE--LDLVSCQFCI 376
              + ++  I   K    +    E  +       S+E +S+  +K      D +     +
Sbjct: 86  EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145

Query: 377 HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY 417
           +Y    V+     LK     L      +  V   +    + 
Sbjct: 146 YY----VKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 74/569 (13%), Positives = 155/569 (27%), Gaps = 160/569 (28%)

Query: 17  KFITMLPDVQCTPLSINNVYLRITPTFYWY--TYHTSVACLFTMDSEGNATYE--DEEYS 72
             I M  D       ++          +W   +    +   F  +      Y+       
Sbjct: 52  DHIIMSKDA------VSGTLR-----LFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIK 99

Query: 73  VQYSEEPEEETEEMMAIRSITEAGFSEAKAEEFHRKRNKPRVQ-----RETVEEAAVRSI 127
            +   +P   T   +  R            + F  K N  R+Q     R+ + E  +R  
Sbjct: 100 TEQ-RQPSMMTRMYIEQRDRLYND-----NQVF-AKYNVSRLQPYLKLRQALLE--LRPA 150

Query: 128 PG---HG--------------YSHSIGEQQDISQH--SSHAQRTAEEMLAIRSITGESFD 168
                 G               S+ +  + D      +     + E +L +        D
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 169 LEDAEQFIQETVIEQNVEDSEEQR---LTERP------VEDDTEE------------TTI 207
                +    + I+  +   + +    L  +P      V  + +               +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 208 TTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRN 267
           TT   + +  L A+       + ++     +  T  E           L           
Sbjct: 271 TTRFKQVTDFLSAAT-----TTHISLDHHSMTLTPDE--------VKSL----------- 306

Query: 268 FNNWTKSMLIDEFLTR--CKSSQPLGSPIKVLDM-GSGKGGDMLKWINGGVKHVVFADIA 324
              +       + L R    ++ P       L +        +  W N   KHV    + 
Sbjct: 307 LLKYL-DCRPQD-LPREVLTTN-PR-----RLSIIAESIRDGLATWDN--WKHVNCDKLT 356

Query: 325 SVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL---ELDLVSCQFCI---HY 378
           ++ IE        L+              AE R  ++  ++      + +    +     
Sbjct: 357 TI-IESS---LNVLE-------------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 379 SFESVQQARCMLKNAAECLKPGGFFVGTVPD-----SNQIMARYRRHQSASFGNDVYQVQ 433
               V      L   +   K       ++P        ++   Y  H+S     D Y + 
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIP 456

Query: 434 CLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVY-FPLLERIAGEFGLKRILKENFRSFYLR 492
             FD+    P +  +Y ++          + +    +E       L R++  +FR F  +
Sbjct: 457 KTFDSDDLIPPYLDQYFYS---------HIGHHLKNIEH-PERMTLFRMVFLDFR-FLEQ 505

Query: 493 KIKEHAG---------LNLLRKMNALEGH 512
           KI+ H           LN L+++   + +
Sbjct: 506 KIR-HDSTAWNASGSILNTLQQLKFYKPY 533

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 75/566 (13%), Positives = 143/566 (25%), Gaps = 193/566 (34%)

Query: 144 QHSSHAQ-RTAEEMLAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTERPVEDDT 202
            H  H    T E     + I       EDA  F+      ++V+D  +  L++  ++   
Sbjct: 2   HHHHHMDFETGEHQYQYKDIL---SVFEDA--FVDNFDC-KDVQDMPKSILSKEEIDH-- 53

Query: 203 EETTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYN------QKKNVGTEL 256
               I  +    S +L    +  S Q E+   +  + + +  +Y       + +     +
Sbjct: 54  ----IIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 257 RKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLD---------M-GSGK--- 303
                I       N    +     ++R +    L   +  L          + GSGK   
Sbjct: 108 MTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 304 GGDMLK-------------WINGGVKHV----------VFADIASVSIEDCKTRYEELKR 340
             D+               W+N    +           +   I                R
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 341 KEEARPYRRNVFSAELRSQYEDKALELDLV-----------SCQFCIHYSFESVQQARCM 389
               +   R +  ++    YE+  L L  V           SC+  +   F+ V      
Sbjct: 227 IHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 390 LKNAAECLK--PGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPP----- 442
                  L          T  +   ++ +Y               Q L     P      
Sbjct: 284 ATTTHISLDHHSMTL---TPDEVKSLLLKY-------LDCR---PQDL-----PREVLTT 325

Query: 443 -PL----FGA-------------KYDFN-----LEGVVNC---PEF------LVYFP--- 467
            P                       + +     +E  +N     E+      L  FP   
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 468 -----LL------------ERIAGEFGLKRILKENFRSF-------YLR---KIKEHAGL 500
                LL              +  +     ++++  +         YL    K++    L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 501 N--LLRKMNALE--------------------GHHKVGTLSKAE----WEAIT-LYQVFA 533
           +  ++   N  +                    GHH    L   E          ++  F 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMTLFRMVFLDFR 501

Query: 534 FEKVKGKVTPDVGKLTPDSGKVTPDL 559
           F  ++ K+  D       SG +   L
Sbjct: 502 F--LEQKIRHD-STAWNASGSILNTL 524

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 295 KVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
           +V+D+G G  G++LK +  +   + +   D++  S+E  + R + L+         + + 
Sbjct: 32  RVIDLGCG-QGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90

Query: 353 SAELRSQYEDKALE-LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406
            A     Y+DK     D  +    I +      +     +   E  +P    V T
Sbjct: 91  GALT---YQDKRFHGYDAATVIEVIEHLDL--SRLGAFERVLFEFAQPKIVIVTT 140

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 47/299 (15%), Positives = 95/299 (31%), Gaps = 33/299 (11%)

Query: 221 SQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKN------SRIVYMRNFNNWTKS 274
           +      ++  +     +   VA++Y +      +L+ +      +     R        
Sbjct: 6   ASGCQKSKNGGSTPS--IRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63

Query: 275 MLIDEFLTRCKSSQPLGSPI---KVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIE 329
            ++++F   C S+ P    +    VLD+G G G D  +   + G    V+  D+    +E
Sbjct: 64  EVLEKFY-GCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLE 122

Query: 330 DCKTRYEELKRKEEARPYRRNV-F---SAELRSQYEDKALE---LDLVSCQFCIHYSFES 382
             +   E    K    P R NV F     E  +  E + +    +D+V      +    +
Sbjct: 123 VARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL-STN 181

Query: 383 VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPP 442
                   K     L+ GG    +   +++ ++   +     +G       CL       
Sbjct: 182 KLAL---FKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGE------CLGGALYLE 232

Query: 443 PLFGAKYDFNLEGV--VNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAG 499
                  +     V  V+     V  P L ++  +          F+   L   +E  G
Sbjct: 233 DFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPDVQFYSCTFRCFKVATLEATREDYG 291

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
             + L  G G G D++  +    + VV  DI+  ++      Y    + E     + +VF
Sbjct: 67  LGRALVPGCGGGHDVV-AMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125

Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
           +      +       DL+        + E   +     K+  E LKP G  +  +
Sbjct: 126 TWRPTELF-------DLIFDYVFFC-AIEPEMRPA-WAKSMYELLKPDGELITLM 171

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 16/137 (11%)

Query: 293 PIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN 350
             KV+D+G G  G++L  +  +   + +   D++   +E  K R   LK        R+ 
Sbjct: 30  AKKVIDLGCG-EGNLLSLLLKDKSFEQITGVDVSYSVLERAKDR---LKIDRLPEMQRKR 85

Query: 351 VFSAELRSQYEDKALEL-DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409
           +   +    Y DK     D  +    I +  E+  QA    K   E  +P    V + P+
Sbjct: 86  ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQA--FEKVLFEFTRPQTVIV-STPN 142

Query: 410 S------NQIMARYRRH 420
                    +     RH
Sbjct: 143 KEYNFHYGNLFEGNLRH 159

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 292 SPIKVLDMGSGKGGDMLKWI---NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
           S   ++D G G  G +L  +      ++ ++  DI+   +            KE      
Sbjct: 721 SASTLVDFGCG-SGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKS 779

Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406
             ++   +  +++ +  ++D+ +C   I +  E   QA    +       P    V T
Sbjct: 780 ATLYDGSI-LEFDSRLHDVDIGTCLEVIEHMEE--DQACEFGEKVLSLFHPKLLIVST 834

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 18/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
            ++D   G  G   K+++     V+  D++  ++E                       +A
Sbjct: 59  PLIDFACG-NGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAA 117

Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414
           ++ S+  D       +  +   H+     ++   + ++    L   G     + +     
Sbjct: 118 QIHSEIGD-----ANIYMRTGFHHIPVEKREL--LGQSLRILLGKQGAMY--LIELGTGC 168

Query: 415 ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA 447
             +       +G   Y++  + +    P +F A
Sbjct: 169 IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTA 201

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 278 DEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337
           ++FL    +  P G   K+L +  G+G +     + G   V   D +SV +   K   +E
Sbjct: 18  NDFLVSVANQIPQG---KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQE 73

Query: 338 LKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECL 397
             +  +    + N+   ++ +         + +   FC   S       + +     + L
Sbjct: 74  --KGVKITTVQSNLADFDIVAD------AWEGIVSIFCHLPSSL----RQQLYPKVYQGL 121

Query: 398 KPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSR 440
           KPGG F+       Q+       +       +  +Q    +  
Sbjct: 122 KPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELPSLN 164

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 12/140 (8%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
             LD+  G G                 D++   + + + ++    +  + R   +++ + 
Sbjct: 40  DYLDLACGTGNLTENLCPKFKN-TWAVDLSQEMLSEAENKFRS--QGLKPRLACQDISNL 96

Query: 355 ELRSQYEDKALELDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
            +  ++       DL++C     +Y        +   K  +  LK GG F+  +    ++
Sbjct: 97  NINRKF-------DLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL 148

Query: 414 MARYRRHQSASFGNDVYQVQ 433
                 +      ++V+   
Sbjct: 149 SQVLGNNDFNYDDDEVFYYW 168

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 20/116 (17%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
             G    ++D G G  G   K++      +   DI  +++++ K +++ +    + +   
Sbjct: 14  FEGKKGVIVDYGCG-NGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDPKEIP 72

Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            N                 D +      H   +  Q     +      LK  G  +
Sbjct: 73  DNSV---------------DFILFANSFHD-MDDKQHV---ISEVKRILKDDGRVI 109

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 14/136 (10%)

Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE------E 343
           L    ++L +G G      +   GG  +V   D +SV +   +  Y  + +         
Sbjct: 40  LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR 99

Query: 344 ARPYRRNVFSAELRSQYEDKALELDLVSC--QFCIHYSFESVQQARCMLKNAAECLKPGG 401
              +    F   L     +K   LD +    +     S E V     +L   +  L PGG
Sbjct: 100 KLDFPSASFDVVL-----EKGT-LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG 153

Query: 402 FFVGTVPDSNQIMARY 417
            F+     +     R+
Sbjct: 154 RFISMTSAAPHFRTRH 169

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 11/116 (9%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
           P     + LD G+G G      +          +     +E+ K     +          
Sbjct: 90  PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP--------V 141

Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
                A + +         DL+  Q+   Y   +        K+  + L P G+  
Sbjct: 142 GKFILASMET-ATLPPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIF 194

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 13/120 (10%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
             G+    L++G    G   + +    K +   D+   +I     R +          + 
Sbjct: 48  SSGAVSNGLEIGCA-AGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHIS----WA 102

Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTV 407
                    ++        DL+     ++Y  E + Q R  + N  + L PGG    G+ 
Sbjct: 103 ATDILQFSTAE------LFDLIVVAEVLYY-LEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
            +  P K LD+G G G + L ++      V   D  ++SI + +      +  +      
Sbjct: 29  KVVKPGKTLDLGCGNGRNSL-YLAANGYDVDAWDKNAMSIANVERIKSI-ENLDNLHTRV 86

Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            ++ +     QY       D +     + +          ++ N   C KPGG+ +
Sbjct: 87  VDLNNLTFDRQY-------DFILSTVVLMFLEAKTIPG--LIANMQRCTKPGGYNL 133

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 268 FNNWTK---------SMLIDEFLTR-CKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVK- 316
           F+  +              D+F       +        +LD+G+G  G +  ++      
Sbjct: 10  FDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAG-TGLLSAFLMEKYPE 68

Query: 317 -HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLVSCQF 374
                 D++   +E  K R+    +             A+     +E+K    D+V    
Sbjct: 69  ATFTLVDMSEKMLEIAKNRFRGNLK--------VKYIEADYSKYDFEEKY---DMVVSAL 117

Query: 375 CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            IH      +  + + K +   LK  G F+
Sbjct: 118 SIH--HLEDEDKKELYKRSYSILKESGIFI 145

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 2/112 (1%)

Query: 295 KVLDMGSGKGGDMLK--WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
            V+D   G G D      + G    V   DI   +I +   +  +L   +     +    
Sbjct: 25  TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84

Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           + +       KA+  +L       H      +     L  A E L  GG   
Sbjct: 85  NMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 28/118 (23%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------EARP 346
           +VLD+ +G GG +       VK VV  D+    ++  +   E    ++        E  P
Sbjct: 40  EVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98

Query: 347 YRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           +    F                +V+C+   H+ F +       +  A   LK GG  +
Sbjct: 99  FTDERF---------------HIVTCRIAAHH-FPNPASF---VSEAYRVLKKGGQLL 137

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 15/161 (9%)

Query: 279 EFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338
           +F+             +VLD+  G G   L+    G   VV  D+    +   + + +E 
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKE- 85

Query: 339 KRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFE--SVQQARCMLKNAAEC 396
            R  +    + +V     ++++       D V        +      +  R +    AE 
Sbjct: 86  -RNLKIEFLQGDVLEIAFKNEF-------DAV---TMFFSTIMYFDEEDLRKLFSKVAEA 134

Query: 397 LKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFD 437
           LKPGG F+   P             +   G +   +    +
Sbjct: 135 LKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWRE 175

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 38/216 (17%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           ++ D+G G G   L   +     V   D++   +E  + +  E         + +++   
Sbjct: 36  RIADIGCGTGTATLLLADHY--EVTGVDLSEEMLEIAQEKAME--TNRHVDFWVQDMREL 91

Query: 355 ELRSQYEDKALELDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
           EL           D ++     ++Y  ++    +    +AA  L  GG  +  V    ++
Sbjct: 92  ELPEPV-------DAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM 143

Query: 414 MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIA 473
              +     A+       +            + A        VV+    L +F     I 
Sbjct: 144 ETLFNGKTYATHAEQSSYI------------WFADPGEEPLSVVH---ELTFF-----IE 183

Query: 474 GEFGLKRILKENF--RSFYLRKIK---EHAGLNLLR 504
           GE G    + E    R++   +       AG  +  
Sbjct: 184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCA 219

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
            + SP KVLD+G G+G + L +++     V   D    SI       E+           
Sbjct: 117 KIISPCKVLDLGCGQGRNSL-YLSLLGYDVTSWDHNENSIAFLNETKEK--ENLNISTAL 173

Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            ++ +A ++  Y       D +       +       +  ++KN  E    GG+ +
Sbjct: 174 YDINAANIQENY-------DFIVSTVVFMFLNRERVPS--IIKNMKEHTNVGGYNL 220

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 24/149 (16%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE-----LKRKEE 343
           P  +   VLD+G G G   +     G K V+  D++   + + K +         ++  E
Sbjct: 41  PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIE 100

Query: 344 ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
                 + +               ++V     +HY   S        K     LK  G F
Sbjct: 101 DIAIEPDAY---------------NVVLSSLALHY-IASFDDI---CKKVYINLKSSGSF 141

Query: 404 VGTVPDSNQIMARYRRHQSASFGNDVYQV 432
           + +V          +   +   GN ++  
Sbjct: 142 IFSVEHPVFTADGRQDWYTDETGNKLHWP 170

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
            +LD+  G G  +  +           +++   +   +      KR  +A  ++ ++   
Sbjct: 43  SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHAR------KRLPDATLHQGDMRDF 95

Query: 355 ELRSQYEDKALELDLVSCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            L  ++         V   F  + Y  ++ ++    + + AE L+PGG  V
Sbjct: 96  RLGRKF-------SAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVV 138

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 12/156 (7%)

Query: 278 DEFLTRCKSSQP-LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336
            +FL R     P        LD G+G G    + +    + V   DI    +   KT   
Sbjct: 64  RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG 123

Query: 337 ELKRKEEARPYRRNVFSAELRS-QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAE 395
           E  ++       RN F   L+    E      D++  Q+ I +   + Q     L+    
Sbjct: 124 EEGKR------VRNYFCCGLQDFTPEPD--SYDVIWIQWVIGHL--TDQHLAEFLRRCKG 173

Query: 396 CLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQ 431
            L+P G  V     + + +       S     DV +
Sbjct: 174 SLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 209

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 24/115 (20%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-----EEARPYRR 349
           +++D+G G G         G  +V+  D++   +   +    +          +     +
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQ 105

Query: 350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           + F               DL      +HY    V+    + +   + L PGG FV
Sbjct: 106 DSF---------------DLAYSSLALHY----VEDVARLFRTVHQALSPGGHFV 141

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
            +LD+  G G  +    +     V   ++++  +   +      +R  +A  +  ++   
Sbjct: 53  SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIAR------RRNPDAVLHHGDMRDF 105

Query: 355 ELRSQYEDKALELDLVSCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            L  ++         V+C F  I +      +    L+  A  + P G  V
Sbjct: 106 SLGRRF-------SAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVV 148

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/150 (13%), Positives = 37/150 (24%), Gaps = 27/150 (18%)

Query: 269 NNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSI 328
               +   +  FL   K          VLD G+G     L             +I+ + +
Sbjct: 3   KTIIRQPQLYRFL---KYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQL 59

Query: 329 EDCKTRYEELKRKEEAR-------PYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFE 381
           +  +    E   K           P++                     V     I +  +
Sbjct: 60  KKAENFSRENNFKLNISKGDIRKLPFKDESM---------------SFVYSYGTIFHMRK 104

Query: 382 SVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
           +  +    +      LKPGG        + 
Sbjct: 105 NDVKE--AIDEIKRVLKPGGLACINFLTTK 132

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVF 352
           +VLD+G G+G + L+         +  DI    I+ C+ ++  +K    E  +       
Sbjct: 44  RVLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYL 102

Query: 353 SAELRSQYEDKALELDLVSCQFCI-HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
                          D V     + H   E + +   +L      +K   + V   P+  
Sbjct: 103 ---------------DGVMISHFVEHLDPERLFE---LLSLCYSKMKYSSYIVIESPNPT 144

Query: 412 QIMARYRRH 420
            + +    +
Sbjct: 145 SLYSLINFY 153

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 10/112 (8%)

Query: 295 KVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
            V  +  G   +   L +       +V  D    +++             +   +R++ +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
             + R  Y       DL++      Y  +   +   + +   + LKPGG  V
Sbjct: 181 KLDTREGY-------DLLTSNGLNIYEPDD-ARVTELYRRFWQALKPGGALV 224

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           +VLD+  G G D +  +  G   V   D +   ++          R++E    +  +  A
Sbjct: 60  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWN--RRKEPAFDKWVIEEA 116

Query: 355 ELRSQYEDKALEL--DLVSCQF----CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
              +  +D       D V C       +  S     + R  LKN A  ++PGG  V
Sbjct: 117 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 22/114 (19%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE---EARPYRRNV 351
           K+LD G G+G         G   V+  D+  + I+  K  + E +               
Sbjct: 49  KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETD 107

Query: 352 FSAELRSQYEDKALELDLVSCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           F               DL+      + +  E  ++    L N    L   G  V
Sbjct: 108 F---------------DLIVSAGNVMGFLAEDGREP--ALANIHRALGADGRAV 144

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 28/122 (22%)

Query: 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------- 342
           +    +D+GSG G   +         +   D +    E       +    +         
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102

Query: 343 EARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
              P   N                 DL+  +  + + +E V  A    +     LK GG 
Sbjct: 103 HNIPIEDNYA---------------DLIVSRGSVFF-WEDVATA---FREIYRILKSGGK 143

Query: 403 FV 404
             
Sbjct: 144 TY 145

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 28/118 (23%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------EARP 346
           +VLD+G+G  G      +  V+  +  D     +E   +  +E   +         E+ P
Sbjct: 24  RVLDIGAG-AGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 82

Query: 347 YRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           +  + F               D+++C++  H+ F  V++A   ++  A  LK  G F+
Sbjct: 83  FPDDSF---------------DIITCRYAAHH-FSDVRKA---VREVARVLKQDGRFL 121

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE---EARPYRRNV 351
            +L++G+G  G  L+ +       V  + +   +   + R  E        EA P+    
Sbjct: 39  SLLEVGAG-TGYWLRRLPYP--QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGES 95

Query: 352 FSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF-VGTVPDS 410
           F               D+V     + +  E V++    L  A   L+PGG   VG +   
Sbjct: 96  F---------------DVVLLFTTLEF-VEDVERV---LLEARRVLRPGGALVVGVLEAL 136

Query: 411 NQIMARYRR 419
           +   A YRR
Sbjct: 137 SPWAALYRR 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	597
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	100.0
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	100.0
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	100.0
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.77
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.71
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.71
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.7
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.7
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.7
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.7
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.69
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.68
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.67
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.66
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.66
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.66
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.66
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.65
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.65
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.65
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.65
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.65
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.65
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.64
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.64
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.64
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.63
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.63
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.63
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.63
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.62
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.62
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.62
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.62
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.61
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.61
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.61
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.61
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.6
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.6
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.6
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.6
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.59
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.58
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.58
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.57
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.57
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.57
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.57
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.56
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.55
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.55
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.55
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.55
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.54
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.54
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.54
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.53
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.52
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.52
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.52
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.51
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.51
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.51
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.48
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.47
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.47
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.46
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.46
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.45
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.45
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.44
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.43
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.43
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.43
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.42
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.41
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.41
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.4
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.4
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.39
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.39
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.38
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.38
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.38
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.38
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.37
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.37
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.36
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.36
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.36
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.36
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.36
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.35
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.35
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.35
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.34
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.34
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.33
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.33
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.33
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.32
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.32
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.31
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.3
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.3
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.3
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.3
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.3
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.29
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.29
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.28
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.28
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.28
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.28
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.28
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.27
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.27
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.27
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.27
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.26
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.26
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.25
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.25
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.24
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.24
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.23
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.23
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.23
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.23
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.22
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.21
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.21
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.21
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.21
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.2
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.2
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.2
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.19
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.19
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.19
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.19
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.18
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.18
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.18
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.17
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.17
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.17
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.17
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.17
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.16
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.16
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.15
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.15
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.14
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.14
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.14
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.14
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.14
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.14
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.14
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.14
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.13
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.12
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.12
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.12
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.12
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.12
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.11
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.11
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.11
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.11
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.1
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.1
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.1
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.1
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.1
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.09
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.09
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.09
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.09
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.08
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.07
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.07
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.07
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.07
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.06
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.06
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.05
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.05
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.04
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.04
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.04
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.04
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.03
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.03
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.02
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.02
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.02
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.02
2o07_A	304	Spermidine synthase; structural genomics, structur	99.02
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.02
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.01
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.01
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.99
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.99
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.99
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.98
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.97
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.97
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.94
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.93
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.92
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.89
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.89
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.88
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.88
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.87
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.84
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.84
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.84
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.83
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.83
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.82
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.81
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.8
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.8
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.79
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.79
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.72
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.63
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.63
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.61
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.59
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.56
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.54
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.52
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.52
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.51
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.51
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.51
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.5
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.43
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.43
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.42
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.38
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.35
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.33
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.32
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.3
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.26
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.2
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.2
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.16
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.15
3khk_A	544	Type I restriction-modification system methylation	98.12
3lkd_A	542	Type I restriction-modification system methyltrans	98.11
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.09
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.05
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.02
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.02
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.0
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.98
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.95
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.93
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.85
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.84
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.68
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.67
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.62
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.6
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.55
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.47
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.23
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.2
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.1
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.05
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.05
3ufb_A	530	Type I restriction-modification system methyltran	97.01
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.87
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.83
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.66
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.54
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.52
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.32
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.31
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.22
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.9
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	93.5
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	93.02
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.55
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	91.95
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	91.84
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.81
2oo3_A	283	Protein involved in catabolism of external DNA; st	91.47
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	91.4
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.07
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	90.85
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	90.79
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.68
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	90.58
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	90.55
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	90.09
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	89.44
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	89.33
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	89.29
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.18
3gms_A	340	Putative NADPH:quinone reductase; structural genom	89.13
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	88.95
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	88.81
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	88.78
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	88.66
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	88.35
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.94
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.83
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	87.44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.61
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	86.16
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	85.64
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	85.4
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.32
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	85.01
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	84.73
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	84.71
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	84.67
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	84.4
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	84.33
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	83.98
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	83.84
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	83.61
4eye_A	342	Probable oxidoreductase; structural genomics, niai	83.58
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	83.55
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	83.54
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	83.52
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	83.51
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	83.49
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	83.47
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	82.13
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	82.05
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	81.91
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	81.02
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	81.01
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	80.95
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	80.28

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=100.00  E-value=2.8e-36  Score=311.10  Aligned_cols=271  Identities=49%  Similarity=0.895  Sum_probs=215.9

Q ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        258 KNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       258 ~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      ..|+|+.+|+||||+++.++..++..+....  .++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++..
T Consensus         2 ~~s~i~~lr~~~~~~k~~l~~~~~~~l~~~~--~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~   79 (313)
T 3bgv_A            2 SQSRIFYLRNFNNWMKSVLIGEFLEKVRQKK--KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYED   79 (313)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHHHHHHHHHTC----CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CcCcchhhhhccHHHHHHHHHHHHHHhhhcc--CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            3688999999999999999999988765432  24679999999999999999876667999999999999999998765


Q ss_pred             hhh------hccccccccceeehhhhc-----cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        338 LKR------KEEARPYRRNVFSAELRS-----QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       338 ~~~------~~~~~~~~~d~F~~dl~e-----~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ...      ....     .+...|...     .++...++||+|+|.+++||+|++.+++..+|++++++|||||+|+++
T Consensus        80 ~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (313)
T 3bgv_A           80 MKNRRDSEYIFSA-----EFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT  154 (313)
T ss_dssp             HHSSSCC-CCCEE-----EEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhcccccccceE-----EEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            431      0011     133333222     233334579999999999998889899999999999999999999999


Q ss_pred             eCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        407 VPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       407 ~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      +++.+.+...+.......+++.+|++.|...  ...+.++.+|.|.+...+++++|+++++.+.++++++||+++...+|
T Consensus       155 ~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          155 TPNSFELIRRLEASETESFGNEIYTVKFQKK--GDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             EECHHHHHHHHTTSSSSEEECSSEEEEESCS--SCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             cCChHHHHHHHHhhccCccCCeeEEEEeCCC--CCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence            9999988888877666678999999988763  45678999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHhhcccchHHHHHHhhhc-----------------------------cCCcccCCCHHHHHHHHhhceeEEEEc
Q psy17742        487 RSFYLRKIKEHAGLNLLRKMNALE-----------------------------GHHKVGTLSKAEWEAITLYQVFAFEKV  537 (597)
Q Consensus       487 ~ef~~e~~~~~~~~~Ll~rM~~l~-----------------------------~~~~~g~Ls~~E~E~~~LY~~FvF~K~  537 (597)
                      ..++..+....+...|+.+|..++                             .....|+||++|||+++||++|||+|.
T Consensus       233 ~~~g~~~~~~~r~~~l~~~~~~~~~y~~~~~~~~~~~~~~ty~~~~~~~~~~~~~~~~~~~~~~e~e~~~~y~~~~f~k~  312 (313)
T 3bgv_A          233 LEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQ  312 (313)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHC----------------------------------CCSSSSCHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHhccchhhhHHHHhhhcccccCccccccccccchhhhHHHHHHHhhccccCcCCCCCHHHHHHHHhheEEEEEeC
Confidence            999998876544235777776543                             011357999999999999999999996

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=100.00  E-value=5.5e-33  Score=281.13  Aligned_cols=278  Identities=32%  Similarity=0.541  Sum_probs=206.2

Q ss_pred             hhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc
Q psy17742        234 QEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING  313 (597)
Q Consensus       234 ~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~  313 (597)
                      .|....+.++++|+.....+...+..+.+..++.+++|++..++..++.         ++.+|||||||+|.++..++..
T Consensus        15 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~vLDiGcG~G~~~~~l~~~   85 (298)
T 1ri5_A           15 AMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTK---------RGDSVLDLGCGKGGDLLKYERA   85 (298)
T ss_dssp             --------------------------CCSHHHHHHHHHHHHHHHHHHCC---------TTCEEEEETCTTTTTHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCC---------CCCeEEEECCCCCHHHHHHHHC
Confidence            3455667889999998777777777778888899999999888776644         5789999999999999998887


Q ss_pred             CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEEEEccchhhhccCHHHHHHHHHH
Q psy17742        314 GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLVSCQFCIHYSFESVQQARCMLKN  392 (597)
Q Consensus       314 g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvVi~~~vLh~lFes~~d~~~~L~~  392 (597)
                      +..+|+|+|+|+.+++.|++++...+.....     .+...+... ++. ..++||+|++.+++||++.+..+...+|++
T Consensus        86 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-----~~~~~d~~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~  159 (298)
T 1ri5_A           86 GIGEYYGVDIAEVSINDARVRARNMKRRFKV-----FFRAQDSYG-RHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRN  159 (298)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHHHTSCCSSEE-----EEEESCTTT-SCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHhcCCCccE-----EEEECCccc-cccCCCCCcCEEEECchhhhhcCCHHHHHHHHHH
Confidence            7669999999999999999988765432111     133333322 222 245799999999999977888999999999


Q ss_pred             HHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCC-cccceeeeccccc-cccccCCCHHHHH
Q psy17742        393 AAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPL-FGAKYDFNLEGVV-NCPEFLVYFPLLE  470 (597)
Q Consensus       393 i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~-fG~~Y~F~L~d~V-n~pEYlv~~e~L~  470 (597)
                      +.++|||||+|++++++...+...+..   ..+++.+|.+.|...  ...+. +|..|.|++.+.+ .+++++++++.+.
T Consensus       160 ~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~  234 (298)
T 1ri5_A          160 IARHLRPGGYFIMTVPSRDVILERYKQ---GRMSNDFYKIELEKM--EDVPMESVREYRFTLLDSVNNCIEYFVDFTRMV  234 (298)
T ss_dssp             HHHTEEEEEEEEEEEECHHHHHHHHHH---TCCBCSSEEEECCCC--SSCCTTTCCEEEEEETTSCSSEEEECCCHHHHH
T ss_pred             HHHhcCCCCEEEEEECCHHHHHHHHcc---CccCCeeEEEEeCcc--ccccccccceEEEEEchhhcCCcccccCHHHHH
Confidence            999999999999999999888777663   457888999888662  22343 8889999988877 6788999999999


Q ss_pred             HHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHhhceeEEEEcCCC
Q psy17742        471 RIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGK  540 (597)
Q Consensus       471 ~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~FvF~K~~~~  540 (597)
                      ++++++||+++....|..||........  .++++|+       .|.+++.+|+++++|.+|+|+|.++.
T Consensus       235 ~ll~~aGf~~v~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~s~~~~~~~~~y~~~~~~k~~~~  295 (298)
T 1ri5_A          235 DGFKRLGLSLVERKGFIDFYEDEGRRNP--ELSKKMG-------LGCLTREESEVVGIYEVVVFRKLVPE  295 (298)
T ss_dssp             HHHHTTTEEEEEEEEHHHHHHHHHHTCH--HHHHSSS-------CCCCCHHHHHHHTTEEEEEEEEC---
T ss_pred             HHHHHcCCEEEEecCHHHHHHHHHHHhh--hHHHhcC-------cCccCHHHHHHHhceEEEEEEEcCCc
Confidence            9999999999999999999998886544  6888875       46899999999999999999999754

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=100.00  E-value=6e-34  Score=295.22  Aligned_cols=257  Identities=18%  Similarity=0.253  Sum_probs=174.9

Q ss_pred             hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc
Q psy17742        264 YMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE  343 (597)
Q Consensus       264 ~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~  343 (597)
                      .++.+|||+++.+|+.+.+.+...  ..++.+|||||||+|.++..|+..+..+|+|+|+|+.||+.|++++...+....
T Consensus        22 ~~~~~nn~vks~li~~~~~~~~~~--~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~   99 (302)
T 2vdw_A           22 PLGILSNYVKTLLISMYCSKTFLD--DSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK   99 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTTSS--CCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC---
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhc--cCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc
Confidence            358899999999999888754332  124689999999999998888877767999999999999999999876542210


Q ss_pred             -----ccccccce----eehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        344 -----ARPYRRNV----FSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       344 -----~~~~~~d~----F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                           ......+.    +..++...++  .++||+|+|.+++||+|.++ +...+|++++++|||||+|++++++.+.+.
T Consensus       100 ~~~~~~~f~~~d~~~d~~~~~l~~~~~--~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~  176 (302)
T 2vdw_A          100 TKYYKFDYIQETIRSDTFVSSVREVFY--FGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTMDGDKLS  176 (302)
T ss_dssp             -CCCEEEEEECCTTSSSHHHHHHTTCC--SSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEECHHHHT
T ss_pred             ccccccchhhhhcccchhhhhhhcccc--CCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence                 00000000    1111122233  35799999999999987765 457999999999999999999999998776


Q ss_pred             HHHhhhccCccCCceEEEEecCCCCCCCCCcccce--eeeccc-cccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742        415 ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY--DFNLEG-VVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYL  491 (597)
Q Consensus       415 ~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y--~F~L~d-~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~  491 (597)
                      ..+.......+++.++...|..     ...++..+  .|.... ..++++|++++++|+++++++||+++...+|.+||.
T Consensus       177 ~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~~~~  251 (302)
T 2vdw_A          177 KLTDKKTFIIHKNLPSSENYMS-----VEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFATIIE  251 (302)
T ss_dssp             TCCSCEEEECCSSSCTTTSEEE-----ECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHHHHH
T ss_pred             HHHhcCCcccccccccccceee-----eccccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHHHHH
Confidence            4332211001122111000000     00000011  122223 347889999999999999999999999999999999


Q ss_pred             HHhhcc------------cchHHHHHHhhhccCCcccCCCHHHHHHHHhhceeEEEEc
Q psy17742        492 RKIKEH------------AGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKV  537 (597)
Q Consensus       492 e~~~~~------------~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~FvF~K~  537 (597)
                      ++++..            +...++.+|+       .+.|+++|||+++||++|||+|+
T Consensus       252 ~~~~~~~~~~~le~~~~~~~~~~l~~~~-------~~~~~~~~~e~~~lY~~f~F~K~  302 (302)
T 2vdw_A          252 RSKKFINGASTMEDRPSTRNFFELNRGA-------IKCEGLDVEDLLSYYVVYVFSKR  302 (302)
T ss_dssp             HHHHHHHTGGGGCCCHHHHHHHHHHHHH-------HHCCSCSHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHhhhhhccCcccccccccccc-------cccCCHhHHHHHhheEEEEEEEC
Confidence            987410            0112233432       24699999999999999999995

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.77  E-value=1.6e-18  Score=175.36  Aligned_cols=215  Identities=17%  Similarity=0.205  Sum_probs=134.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|++++...+.....     .++..+.....+...++||+|+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v-----~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNM-----QFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGE-----EEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcce-----EEEEcCHHHhhhhcCCCceEEE
Confidence            357999999999999999998874 9999999999999999998765543222     1344443322212346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..++||+    +++..+|+++.++|||||+|++.+++.............  +. .+    ...    .....+.    
T Consensus       142 ~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~--~~-~~----~~~----~~~~~~~----  202 (285)
T 4htf_A          142 FHAVLEWV----ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGN--FD-YV----QAG----MPKKKKR----  202 (285)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTC--HH-HH----HTT----CCCC-------
T ss_pred             ECchhhcc----cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcC--HH-HH----hhh----ccccccc----
Confidence            99999998    677899999999999999999999988654332211100  00 00    000    0000000    


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHhhce
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQV  531 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~  531 (597)
                           ...+.+.++.+.+.++++++||+++....+.-|.+-.........-+.+|..++..    .-....+..++-|..
T Consensus       203 -----~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~----~~~~~~~~~~~~~~~  273 (285)
T 4htf_A          203 -----TLSPDYPRDPTQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETR----YCRQEPYITLGRYIH  273 (285)
T ss_dssp             ------CCCSCCBCHHHHHHHHHHTTCEEEEEEEESSSGGGCSSTTHHHHTHHHHHHHHHH----HTTSTTGGGGCSEEE
T ss_pred             -----cCCCCCCCCHHHHHHHHHHCCCceeeeeeEEEeeecccccccCcccHHHHHHHHHH----hcCCChHHHHHhheE
Confidence                 00123457899999999999999998887654433222111100113333333310    011123334455788


Q ss_pred             eEEEEcCCC
Q psy17742        532 FAFEKVKGK  540 (597)
Q Consensus       532 FvF~K~~~~  540 (597)
                      ++++|..+.
T Consensus       274 ~varK~~~~  282 (285)
T 4htf_A          274 VTARKPQSK  282 (285)
T ss_dssp             EEEECCCC-
T ss_pred             EEEEcCCcc
Confidence            899987653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.71  E-value=4.1e-17  Score=164.30  Aligned_cols=157  Identities=17%  Similarity=0.129  Sum_probs=108.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc------------------------cccc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE------------------------ARPY  347 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~------------------------~~~~  347 (597)
                      ++.+|||||||+|.++..++..++.+|+|+|+|+.||+.|++++........                        ....
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            5789999999999888777777766899999999999999987644210000                        0000


Q ss_pred             ccceeehhhhccCCC---CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCc
Q psy17742        348 RRNVFSAELRSQYED---KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSAS  424 (597)
Q Consensus       348 ~~d~F~~dl~e~l~~---~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~  424 (597)
                      +..++..|+....+.   ..++||+|++.++|||+..+.++...+|++++++|||||+|+++....              
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~--------------  200 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR--------------  200 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS--------------
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec--------------
Confidence            001333443332221   235799999999999976677889999999999999999999985311              


Q ss_pred             cCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        425 FGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       425 fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                        ...|.  .           |. ..        .+.+.++.+++.++++++||+++....+
T Consensus       201 --~~~~~--~-----------g~-~~--------~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          201 --LPSYM--V-----------GK-RE--------FSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             --CCEEE--E-----------TT-EE--------EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --Cccce--e-----------CC-eE--------eeccccCHHHHHHHHHHCCCEEEEEeec
Confidence              11111  0           10 00        1123468899999999999999988765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.71  E-value=4.1e-17  Score=159.97  Aligned_cols=182  Identities=20%  Similarity=0.250  Sum_probs=126.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++......         .++..++. .++...++||+|+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---------~~~~~d~~-~~~~~~~~fD~v~  121 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDL---------SFIKGDLS-SLPFENEQFEAIM  121 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBTTE---------EEEECBTT-BCSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccCCc---------eEEEcchh-cCCCCCCCccEEE
Confidence            568999999999999999998875 999999999999999887422111         13333332 3344456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||+    .+...+|+++.++|||||+|++.+++.......      ..+..                .++.    
T Consensus       122 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~~~----------------~~~~----  171 (242)
T 3l8d_A          122 AINSLEWT----EEPLRALNEIKRVLKSDGYACIAILGPTAKPRE------NSYPR----------------LYGK----  171 (242)
T ss_dssp             EESCTTSS----SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGG------GGGGG----------------GGTC----
T ss_pred             EcChHhhc----cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhh------hhhhh----------------hccc----
Confidence            99999998    677899999999999999999998765321100      00000                0000    


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHhhce
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQV  531 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~  531 (597)
                            ......++...+.++++++||+++....+.   .   ....     .++        ...+...-..+...+..
T Consensus       172 ------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---~---~~~~-----~~~--------~~~~~~~l~~~~~~~~~  226 (242)
T 3l8d_A          172 ------DVVCNTMMPWEFEQLVKEQGFKVVDGIGVY---K---RGVN-----EKM--------LGQLSTDLQQSLTFLWV  226 (242)
T ss_dssp             ------CCSSCCCCHHHHHHHHHHTTEEEEEEEEEE---C---TTCC-----HHH--------HTTSCHHHHHHTEEEEE
T ss_pred             ------cccccCCCHHHHHHHHHHcCCEEEEeeccc---c---cCcc-----HHH--------HHHHHHhHHHHHhHhhh
Confidence                  011234678899999999999999887651   1   1111     111        12456666678888899


Q ss_pred             eEEEEcCC
Q psy17742        532 FAFEKVKG  539 (597)
Q Consensus       532 FvF~K~~~  539 (597)
                      |+++|.+.
T Consensus       227 ~~~~~~~~  234 (242)
T 3l8d_A          227 FMLKRHKE  234 (242)
T ss_dssp             EEEEECC-
T ss_pred             hhhHHHHH
Confidence            99998763

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=1.3e-16  Score=152.73  Aligned_cols=143  Identities=11%  Similarity=0.051  Sum_probs=107.7

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....           .+...++. .++...++||+|++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~d~~-~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPSV-----------TFHHGTIT-DLSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCTTS-----------EEECCCGG-GGGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCC-----------eEEeCccc-ccccCCCCeEEEEe
Confidence            67899999999999999998875 8999999999999999874321           12333322 23334467999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeee
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFN  452 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~  452 (597)
                      ..++||+  ..+++..+|+++.++|||||+|++++++...                .  -.+...       .       
T Consensus       109 ~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~----------------~--~~~~~~-------~-------  154 (203)
T 3h2b_A          109 WYSLIHM--GPGELPDALVALRMAVEDGGGLLMSFFSGPS----------------L--EPMYHP-------V-------  154 (203)
T ss_dssp             ESSSTTC--CTTTHHHHHHHHHHTEEEEEEEEEEEECCSS----------------C--EEECCS-------S-------
T ss_pred             hhhHhcC--CHHHHHHHHHHHHHHcCCCcEEEEEEccCCc----------------h--hhhhch-------h-------
Confidence            9999997  3347889999999999999999998866532                0  011110       0       


Q ss_pred             ccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742        453 LEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS  488 (597)
Q Consensus       453 L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e  488 (597)
                            ...+.++.+.+.++++++||+++....+..
T Consensus       155 ------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          155 ------ATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             ------SCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             ------hhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence                  012356889999999999999999887654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.70  E-value=1.2e-16  Score=161.96  Aligned_cols=107  Identities=18%  Similarity=0.297  Sum_probs=84.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|..+..+++..   ..+|+|+|+|+.||+.|+++....+...+..     +...++ ..++.  +.||
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~-----~~~~D~-~~~~~--~~~d  141 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVD-----VIEGDI-RDIAI--ENAS  141 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEE-----EEESCT-TTCCC--CSEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEE-----Eeeccc-ccccc--cccc
Confidence            68899999999999999888642   2489999999999999999987665443321     334443 23444  3599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|++.+++||+  +..+...+|++++++|||||+|++...
T Consensus       142 ~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          142 MVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             EEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceeeeeeeec--CchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            99999999997  556778899999999999999998753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.70  E-value=2e-16  Score=156.78  Aligned_cols=172  Identities=14%  Similarity=0.079  Sum_probs=113.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++......         .+...++ ..++...++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------~~~~~d~-~~~~~~~~~fD~v~  113 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVV---------CYEQKAI-EDIAIEPDAYNVVL  113 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTE---------EEEECCG-GGCCCCTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCe---------EEEEcch-hhCCCCCCCeEEEE
Confidence            5789999999999999999988866999999999999999988651111         1333333 23444456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..++||+    .++..+|++++++|||||+|+++++++.........-....-+..+ ...+..-    +. -+.....
T Consensus       114 ~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~~  183 (253)
T 3g5l_A          114 SSLALHYI----ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKL-HWPVDRY----FN-ESMRTSH  183 (253)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEE-EEEECCT----TC-CCEEEEE
T ss_pred             Echhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceE-EEEeccc----cc-cceEEEe
Confidence            99999998    6788999999999999999999998875332110000000001110 1111110    00 0000011


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                      ++.  .....|..+.+++.++++++||+++....
T Consensus       184 ~~~--~~~~~~~~t~~~~~~~l~~aGF~~~~~~e  215 (253)
T 3g5l_A          184 FLG--EDVQKYHRTVTTYIQTLLKNGFQINSVIE  215 (253)
T ss_dssp             ETT--EEEEEECCCHHHHHHHHHHTTEEEEEEEC
T ss_pred             ecc--ccCccEecCHHHHHHHHHHcCCeeeeeec
Confidence            111  12334556999999999999999998764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.70  E-value=1.3e-16  Score=153.71  Aligned_cols=154  Identities=16%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sFD  368 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++   ....         +...+....   ......+||
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~---------~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---GAGE---------VHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---CSSC---------EEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---cccc---------cchhhHHhhcccccccCCCcc
Confidence            468999999999999999998875 999999999999999987   1110         222221111   112234599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccc
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK  448 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~  448 (597)
                      +|++..++| .    .++..+|++++++|||||+|++.+++......       ..+........|...    ...+.  
T Consensus       119 ~v~~~~~l~-~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~--  180 (227)
T 3e8s_A          119 LICANFALL-H----QDIIELLSAMRTLLVPGGALVIQTLHPWSVAD-------GDYQDGWREESFAGF----AGDWQ--  180 (227)
T ss_dssp             EEEEESCCC-S----SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCT-------TCCSCEEEEECCTTS----SSCCC--
T ss_pred             EEEECchhh-h----hhHHHHHHHHHHHhCCCeEEEEEecCccccCc-------cccccccchhhhhcc----ccCcc--
Confidence            999999998 4    56779999999999999999999988743211       012121111222110    00000  


Q ss_pred             eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                               ....++++.+.+.++++++||+++....
T Consensus       181 ---------~~~~~~~~~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          181 ---------PMPWYFRTLASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             ---------CEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred             ---------cceEEEecHHHHHHHHHHcCCeEEEEec
Confidence                     1223457899999999999999998764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.69  E-value=5.5e-16  Score=155.11  Aligned_cols=155  Identities=15%  Similarity=0.026  Sum_probs=112.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+...+..     +...+.. .++...++||+|+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-----~~~~d~~-~~~~~~~~fD~v~  134 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVT-----FSYADAM-DLPFEDASFDAVW  134 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECCTT-SCCSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceE-----EEECccc-cCCCCCCCccEEE
Confidence            578999999999999999887534699999999999999999987665432221     3333322 2444446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh----HHH-HHHhhhccCccCCceEEEEecCCCCCCCCCcc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN----QIM-ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFG  446 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~----~i~-~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG  446 (597)
                      +..++||+    .+...+|+++.++|||||++++..+...    ... ..+..     +    +     .       .+ 
T Consensus       135 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~-----~----~-----~-------~~-  188 (273)
T 3bus_A          135 ALESLHHM----PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDA-----F----R-----A-------GG-  188 (273)
T ss_dssp             EESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHH-----H----H-----H-------HH-
T ss_pred             EechhhhC----CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHH-----H----H-----h-------hc-
Confidence            99999998    6678999999999999999999875431    100 00000     0    0     0       00 


Q ss_pred             cceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHH
Q psy17742        447 AKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFY  490 (597)
Q Consensus       447 ~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~  490 (597)
                                  ...++.+.+.+.++++++||+++....+...+
T Consensus       189 ------------~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~  220 (273)
T 3bus_A          189 ------------GVLSLGGIDEYESDVRQAELVVTSTVDISAQA  220 (273)
T ss_dssp             ------------TCCCCCCHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             ------------CccCCCCHHHHHHHHHHcCCeEEEEEECcHhH
Confidence                        01135778999999999999999988876654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.69  E-value=3.4e-16  Score=159.00  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++.. + .+|+|+|+|+.+++.|+++....+......     +...+.. .++...++||+|
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-----~~~~d~~-~~~~~~~~fD~v  154 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNIT-----VKYGSFL-EIPCEDNSYDFI  154 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEE-----EEECCTT-SCSSCTTCEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceE-----EEEcCcc-cCCCCCCCEeEE
Confidence            5789999999999999998876 5 499999999999999999887665432221     3333322 344445679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++||+    .++..+|+++.++|||||+|++..+......           ...               .+...+ 
T Consensus       155 ~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------~~~---------------~~~~~~-  203 (297)
T 2o57_A          155 WSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDPMKEDGI-----------DKS---------------SIQPIL-  203 (297)
T ss_dssp             EEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEECTTC-----------CGG---------------GGHHHH-
T ss_pred             Eecchhhhc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCCC-----------chH---------------HHHHHH-
Confidence            999999998    5688999999999999999999876432100           000               000000 


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSF  489 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef  489 (597)
                          .....+ .+.+...+.++++++||+++....+...
T Consensus       204 ----~~~~~~-~~~~~~~~~~~l~~aGf~~~~~~~~~~~  237 (297)
T 2o57_A          204 ----DRIKLH-DMGSLGLYRSLAKECGLVTLRTFSRPDS  237 (297)
T ss_dssp             ----HHHTCS-SCCCHHHHHHHHHHTTEEEEEEEECHHH
T ss_pred             ----HHhcCC-CCCCHHHHHHHHHHCCCeEEEEEECchh
Confidence                000011 2457889999999999999998876643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=3.9e-16  Score=159.48  Aligned_cols=174  Identities=11%  Similarity=0.068  Sum_probs=116.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..+++. + .+|+|+|+|+.+++.|+++....+...+..     +...+.. .+   .++||+|
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~-~~---~~~fD~v  141 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKE-----VRIQGWE-EF---DEPVDRI  141 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEE-----EEECCGG-GC---CCCCSEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceE-----EEECCHH-Hc---CCCccEE
Confidence            6789999999999999998887 6 699999999999999999987765432221     3344433 23   3679999


Q ss_pred             EEccchhhhcc-----CHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        371 SCQFCIHYSFE-----SVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       371 i~~~vLh~lFe-----s~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      ++..++||+..     ...+...+|+++.++|||||+|++..+............  ..+...  ...|.        .|
T Consensus       142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~--~~~~~--------~~  209 (302)
T 3hem_A          142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG--LTSPMS--LLRFI--------KF  209 (302)
T ss_dssp             EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHT--CCCCHH--HHHHH--------HH
T ss_pred             EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhcc--cccccc--ccchH--------HH
Confidence            99999999733     225678999999999999999999876542221111000  000000  00000        00


Q ss_pred             ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742        446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKI  494 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~  494 (597)
                      -.+|.|       ..-++.+.+.+.++++++||+++....+...|....
T Consensus       210 ~~~~~~-------p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~tl  251 (302)
T 3hem_A          210 ILTEIF-------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTL  251 (302)
T ss_dssp             HHHHTC-------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred             HHHhcC-------CCCCCCCHHHHHHHHHhCCcEEEEEEeCchhHHHHH
Confidence            000100       011356788999999999999999998877765443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.69  E-value=1.2e-16  Score=156.07  Aligned_cols=156  Identities=14%  Similarity=0.177  Sum_probs=110.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++... ..         .+...+.....  ..++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-~v---------~~~~~d~~~~~--~~~~fD~v~  108 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-GI---------TYIHSRFEDAQ--LPRRYDNIV  108 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-CE---------EEEESCGGGCC--CSSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-Ce---------EEEEccHHHcC--cCCcccEEE
Confidence            457899999999999999988775 899999999999999988654 11         13334433332  235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHH-HhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAA-ECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~-rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +..++||+    .++..+|+++. ++|||||+|++++++...+......... .+...              ..+..   
T Consensus       109 ~~~~l~~~----~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~---  166 (250)
T 2p7i_A          109 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMG-IISHN--------------SAVTE---  166 (250)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTT-SSSST--------------TCCCH---
T ss_pred             EhhHHHhh----cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcC-ccccc--------------hhccc---
Confidence            99999998    67789999999 9999999999999988655443321100 00000              00000   


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                         ..........++.+.+.++++++||+++....
T Consensus       167 ---~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  198 (250)
T 2p7i_A          167 ---AEFAHGHRCTYALDTLERDASRAGLQVTYRSG  198 (250)
T ss_dssp             ---HHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ---ccccccccccCCHHHHHHHHHHCCCeEEEEee
Confidence               00000112357889999999999999998763

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.68  E-value=7.9e-16  Score=155.51  Aligned_cols=172  Identities=14%  Similarity=0.157  Sum_probs=114.0

Q ss_pred             CCCEEEEECCCCChhHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++ ..+. +|+|+|+|+.+++.|+++....+.....     .+...+. ..++   ++||+|
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~-----~~~~~d~-~~~~---~~fD~v  133 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSK-----RVLLAGW-EQFD---EPVDRI  133 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCE-----EEEESCG-GGCC---CCCSEE
T ss_pred             CcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCe-----EEEECCh-hhCC---CCeeEE
Confidence            67899999999999999988 4454 9999999999999999988765432221     1333333 2343   579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++||+  ...++..+|+++.++|||||+|++..++....... ..     .+...   .+..          ..+.
T Consensus       134 ~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~-----~~~~~---~~~~----------~~~~  192 (287)
T 1kpg_A          134 VSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI-HE-----RGLPM---SFTF----------ARFL  192 (287)
T ss_dssp             EEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHH-TT-----TTCSC---HHHH----------HHHH
T ss_pred             EEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccc-cc-----ccccc---cccc----------cchh
Confidence            999999997  33567899999999999999999988765322210 00     00000   0000          0000


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKI  494 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~  494 (597)
                      -++...+-....+.+.+.+.++++++||+++....+...|....
T Consensus       193 ~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~~~  236 (287)
T 1kpg_A          193 KFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTL  236 (287)
T ss_dssp             HHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHH
T ss_pred             hhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhHHHHH
Confidence            00000000001245889999999999999999998877665443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.68  E-value=5.7e-16  Score=153.40  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=108.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++....+...+..     +...+. ..++...++||+|+
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-----~~~~d~-~~~~~~~~~fD~v~  119 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVK-----GITGSM-DNLPFQNEELDLIW  119 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECCT-TSCSSCTTCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceE-----EEECCh-hhCCCCCCCEEEEE
Confidence            568999999999999999988765599999999999999999988766543221     334433 34444456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh------hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS------NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~------~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      |..++||+     ++..+|+++.++|||||+|++..++.      ..+.....                           
T Consensus       120 ~~~~l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~---------------------------  167 (257)
T 3f4k_A          120 SEGAIYNI-----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWM---------------------------  167 (257)
T ss_dssp             EESCSCCC-----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHH---------------------------
T ss_pred             ecChHhhc-----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHH---------------------------
Confidence            99999997     36789999999999999999987541      11111000                           


Q ss_pred             ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                       ..|           ..+.+.+.+.++++++||+++....+
T Consensus       168 -~~~-----------~~~~~~~~~~~~l~~aGf~~v~~~~~  196 (257)
T 3f4k_A          168 -DAY-----------PEISVIPTCIDKMERAGYTPTAHFIL  196 (257)
T ss_dssp             -HHC-----------TTCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred             -HhC-----------CCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence             000           01457889999999999999987643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.67  E-value=2.4e-15  Score=148.86  Aligned_cols=159  Identities=17%  Similarity=0.174  Sum_probs=112.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++.... .  ..     .+...+.. .++...++||+|+
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~-----~~~~~d~~-~~~~~~~~fD~v~  125 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-N--KI-----IFEANDIL-TKEFPENNFDLIY  125 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-T--TE-----EEEECCTT-TCCCCTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-C--Ce-----EEEECccc-cCCCCCCcEEEEe
Confidence            67899999999999999988762259999999999999999886543 1  11     13333322 2344456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||+  +..++..+|+++.++|||||++++..+......         .+.                    ..+.-
T Consensus       126 ~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~--------------------~~~~~  174 (266)
T 3ujc_A          126 SRDAILAL--SLENKNKLFQKCYKWLKPTGTLLITDYCATEKE---------NWD--------------------DEFKE  174 (266)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG---------GCC--------------------HHHHH
T ss_pred             HHHHHHhc--ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc---------cch--------------------HHHHH
Confidence            99999997  557899999999999999999999875432100         000                    00000


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK  493 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~  493 (597)
                      .+.   ...-.+++.+.+.++++++||+++....+...|...
T Consensus       175 ~~~---~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  213 (266)
T 3ujc_A          175 YVK---QRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQL  213 (266)
T ss_dssp             HHH---HHTCCCCCHHHHHHHHHHTTCEEEEEEECHHHHHHH
T ss_pred             HHh---cCCCCCCCHHHHHHHHHHcCCeEEEEEeCCHHHHHH
Confidence            000   000124678999999999999999999887766533

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.67  E-value=6.7e-16  Score=154.64  Aligned_cols=146  Identities=16%  Similarity=0.100  Sum_probs=109.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++....+...+..     +...+. ..++...++||+|+
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~-~~~~~~~~~fD~i~  119 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVT-----GIVGSM-DDLPFRNEELDLIW  119 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECCT-TSCCCCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcE-----EEEcCh-hhCCCCCCCEEEEE
Confidence            678999999999999999998865699999999999999999987765543221     344443 33444456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh------hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS------NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~------~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      |..++||+     ++..+|+++.++|||||+|++..+..      ..+...+.                           
T Consensus       120 ~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---------------------------  167 (267)
T 3kkz_A          120 SEGAIYNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM---------------------------  167 (267)
T ss_dssp             ESSCGGGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHH---------------------------
T ss_pred             EcCCceec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHH---------------------------
Confidence            99999997     46789999999999999999987531      11110000                           


Q ss_pred             ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                       ..|           ..+.+.+.+.++++++||+++....+.
T Consensus       168 -~~~-----------~~~~~~~~~~~~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          168 -DAY-----------PEIDTIPNQVAKIHKAGYLPVATFILP  197 (267)
T ss_dssp             -HHC-----------TTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred             -HhC-----------CCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence             000           024567889999999999999887654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.66  E-value=4.8e-16  Score=150.41  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|++++. .    ..     .+...++. .++.. ++||+|+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-~----~~-----~~~~~d~~-~~~~~-~~fD~v~  111 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP-K----EF-----SITEGDFL-SFEVP-TSIDTIV  111 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC-T----TC-----CEESCCSS-SCCCC-SCCSEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC-C----ce-----EEEeCChh-hcCCC-CCeEEEE
Confidence            56899999999999999998887 499999999999999998865 1    11     13333322 23333 6799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh---HHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN---QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK  448 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~---~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~  448 (597)
                      +..++||+  .......+|+++.++|||||+++++.++..   .....+.......+                       
T Consensus       112 ~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----------------------  166 (220)
T 3hnr_A          112 STYAFHHL--TDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGF-----------------------  166 (220)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTC-----------------------
T ss_pred             ECcchhcC--ChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCC-----------------------
Confidence            99999998  223334499999999999999999975542   22111111000000                       


Q ss_pred             eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                       . .+.. .....++.+.+.+.++++++||+++....
T Consensus       167 -~-~~~~-~~~~~~~~~~~~~~~~l~~aGf~v~~~~~  200 (220)
T 3hnr_A          167 -H-QLAN-DLQTEYYTRIPVMQTIFENNGFHVTFTRL  200 (220)
T ss_dssp             -H-HHHH-HHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred             -c-cchh-hcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence             0 0000 00123456889999999999999887653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.66  E-value=2.9e-15  Score=146.31  Aligned_cols=112  Identities=15%  Similarity=0.260  Sum_probs=90.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++....+..  .     .+...++. .++.. ++||+|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~--~-----~~~~~d~~-~~~~~-~~fD~v~  106 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLK--P-----RLACQDIS-NLNIN-RKFDLIT  106 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCC--C-----EEECCCGG-GCCCS-CCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCC--e-----EEEecccc-cCCcc-CCceEEE
Confidence            46899999999999999998887 48999999999999999987665431  1     13333332 23333 5799999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      +.. ++||+ .+..+...+|+++.++|||||+|++++++...+.
T Consensus       107 ~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  149 (246)
T 1y8c_A          107 CCLDSTNYI-IDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLS  149 (246)
T ss_dssp             ECTTGGGGC-CSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHH
T ss_pred             EcCcccccc-CCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHH
Confidence            998 99996 5667889999999999999999999999987654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.66  E-value=8.9e-16  Score=151.37  Aligned_cols=144  Identities=18%  Similarity=0.180  Sum_probs=108.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++     ..         +...+....+ +...++||+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----~~---------~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-----FN---------VVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-----SE---------EECSCHHHHHHTSCTTCBSEE
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-----cc---------eeeccHHHHhhhcCCCCeeEE
Confidence            568999999999999999888875 899999999999999876     11         3333322211 2234679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +|..++||+  ..++...+|+++.++|||||+|++.+++...+......     +         ..      +       
T Consensus       106 ~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----~---------~~------~-------  156 (240)
T 3dli_A          106 MISHFVEHL--DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-----Y---------ID------P-------  156 (240)
T ss_dssp             EEESCGGGS--CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-----T---------TS------T-------
T ss_pred             EECCchhhC--CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-----h---------cC------c-------
Confidence            999999998  33467899999999999999999999987654432211     0         00      0       


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                              ...+.++.+.+.++++++||+++....+.
T Consensus       157 --------~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          157 --------THKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             --------TCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             --------cccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence                    01124677999999999999999887665

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.66  E-value=1.1e-15  Score=154.74  Aligned_cols=187  Identities=15%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~~~sFD  368 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...........  ...+...+.. .++   ...++||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--~~~~~~~d~~-~~~~~~~~~~~fD  132 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFD--KWVIEEANWL-TLDKDVPAGDGFD  132 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHH--TCEEEECCGG-GHHHHSCCTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccc--eeeEeecChh-hCccccccCCCeE
Confidence            468999999999999999998885 99999999999999998764332211000  0012222211 111   2346799


Q ss_pred             EEEEc-cchhhhcc---CHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh-hccCcc-----CCceEEEEecCCC
Q psy17742        369 LVSCQ-FCIHYSFE---SVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR-HQSASF-----GNDVYQVQCLFDT  438 (597)
Q Consensus       369 vVi~~-~vLh~lFe---s~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~-~~~~~f-----gN~vy~I~F~~~~  438 (597)
                      +|+|. .++||+..   +.+++..+|++++++|||||+|++++++.+.+...-.. .....+     ...+....+... 
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  211 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVN-  211 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHTCCCSSCCSSBCCCSCEEEEEEEEEET-
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhhcCCCCCccceeeccccccccccceEEEc-
Confidence            99998 89999822   13568999999999999999999999999887754222 110011     111111101000 


Q ss_pred             CCCCCCcccceeeecccc----------ccccccCCCHHHHHHHHHHc--CCeEEEEE
Q psy17742        439 SRPPPLFGAKYDFNLEGV----------VNCPEFLVYFPLLERIAGEF--GLKRILKE  484 (597)
Q Consensus       439 ~d~~p~fG~~Y~F~L~d~----------Vn~pEYlv~~e~L~~La~ea--GfelV~~~  484 (597)
                       .........|.+.+...          ..+.-|.+..+.++++++++  ||+.+...
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~l~~af~GF~~v~~~  268 (293)
T 3thr_A          212 -NKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVL  268 (293)
T ss_dssp             -TEEEEEEEEEEEEEC------CCEEEEEEEEECCCCHHHHHHHHHHTTTTCEEEEEE
T ss_pred             -CCccEEEEEEEEecCCccccCCCCcceeeeecCHHHHHHHHHHHHHHhcCCceEEEe
Confidence             00011122333332211          01122566788999999999  99888643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.65  E-value=1.7e-15  Score=149.49  Aligned_cols=148  Identities=19%  Similarity=0.195  Sum_probs=107.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++...+....      .+...++. .++...++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~------~~~~~d~~-~~~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVR------NYFCCGLQ-DFTPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEE------EEEECCGG-GCCCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceE------EEEEcChh-hcCCCCCCEEEEE
Confidence            5789999999999999988877666999999999999999998766532111      13344332 3333445799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||+  ..+....+|+++.++|||||+|++..+....              ..+    |...        +     
T Consensus       152 ~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------------~~~----~~~~--------~-----  198 (241)
T 2ex4_A          152 IQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--------------GVI----LDDV--------D-----  198 (241)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS--------------SEE----EETT--------T-----
T ss_pred             EcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEEccCCC--------------cce----eccc--------C-----
Confidence            99999998  3344679999999999999999997654421              001    1110        0     


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                              ..+..+.+.+.++++++||+++......
T Consensus       199 --------~~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          199 --------SSVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             --------TEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             --------CcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence                    0112367899999999999999887553

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.65  E-value=2.1e-15  Score=145.46  Aligned_cols=138  Identities=20%  Similarity=0.214  Sum_probs=104.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++..   ..         +...++. .++ ..++||+|+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~---------~~~~d~~-~~~-~~~~fD~v~  107 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLG---RP---------VRTMLFH-QLD-AIDAYDAVW  107 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT---SC---------CEECCGG-GCC-CCSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcC---Cc---------eEEeeec-cCC-CCCcEEEEE
Confidence            568999999999999999998874 99999999999999998861   11         2222222 233 346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |..++||+  ..+++..+|+++.++|||||+|+++++.....                .           ...++..+  
T Consensus       108 ~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----------------~-----------~~~~~~~~--  156 (211)
T 3e23_A          108 AHACLLHV--PRDELADVLKLIWRALKPGGLFYASYKSGEGE----------------G-----------RDKLARYY--  156 (211)
T ss_dssp             ECSCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC----------------E-----------ECTTSCEE--
T ss_pred             ecCchhhc--CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc----------------c-----------ccccchhc--
Confidence            99999998  34588999999999999999999987543200                0           00011111  


Q ss_pred             eccccccccccCCCHHHHHHHHHHcC-CeEEEEEe
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFG-LKRILKEN  485 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaG-felV~~~~  485 (597)
                                ..++.+.+.++++++| |+++....
T Consensus       157 ----------~~~~~~~~~~~l~~aG~f~~~~~~~  181 (211)
T 3e23_A          157 ----------NYPSEEWLRARYAEAGTWASVAVES  181 (211)
T ss_dssp             ----------CCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred             ----------cCCCHHHHHHHHHhCCCcEEEEEEe
Confidence                      2468899999999999 99998764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.65  E-value=1.1e-15  Score=155.09  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhh-----------hcccc-------------cc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKR-----------KEEAR-------------PY  347 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~-----------~~~~~-------------~~  347 (597)
                      ++.+|||||||+|.....++..+..+|+|+|+|+.|++.|++++.....           .....             ..
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            4689999999999955434333345999999999999999987643110           00000             00


Q ss_pred             ccceeehhhhccCC-----CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhcc
Q psy17742        348 RRNVFSAELRSQYE-----DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQS  422 (597)
Q Consensus       348 ~~d~F~~dl~e~l~-----~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~  422 (597)
                      ...++..++...++     ...++||+|+|.+++||+..+.+++..+|++++++|||||+|++...              
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~--------------  216 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA--------------  216 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE--------------
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe--------------
Confidence            00122223332122     22356999999999999544447899999999999999999999731              


Q ss_pred             CccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        423 ASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       423 ~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                        +....|..  ..          .          ..+.+.++.+.+.++++++||+++....+.
T Consensus       217 --~~~~~~~~--~~----------~----------~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          217 --LEESWYLA--GE----------A----------RLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             --ESCCEEEE--TT----------E----------EEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --cCcceEEc--CC----------e----------eeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence              11111111  00          0          012245789999999999999999877653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.65  E-value=3.3e-15  Score=147.41  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=106.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++.....   ..     .+...++. .++...++||+|+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~-----~~~~~d~~-~~~~~~~~fD~v~  163 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP---VG-----KFILASME-TATLPPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS---EE-----EEEESCGG-GCCCCSSCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCC---ce-----EEEEccHH-HCCCCCCCeEEEE
Confidence            578999999999999999887766689999999999999999875431   11     13333332 2343446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||+  +..++..+|+++.++|||||+|++..+....              .. +...  ..              
T Consensus       164 ~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------------~~-~~~~--~~--------------  210 (254)
T 1xtp_A          164 IQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKENCSTG--------------DR-FLVD--KE--------------  210 (254)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEBC----------------CC-EEEE--TT--------------
T ss_pred             EcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEecCCCc--------------cc-ceec--cc--------------
Confidence            99999997  4467899999999999999999998752210              00 0000  00              


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                             ...+..+.+.+.++++++||+++.....
T Consensus       211 -------~~~~~~~~~~~~~~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          211 -------DSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             -------TTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             -------CCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence                   0112357899999999999999987654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.65  E-value=2e-15  Score=150.32  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=84.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++....+.....      +...+. ..++...++||+|+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~------~~~~d~-~~l~~~~~~fD~V~  108 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVE------YVQGDA-EQMPFTDERFHIVT  108 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEECCC--CCCSCTTCEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceE------EEEecH-HhCCCCCCCEEEEE
Confidence            57899999999999999988877 49999999999999999988765433211      333332 23444456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +.+++||+    .++..+|+++.++|||||+|++..+
T Consensus       109 ~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          109 CRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            99999998    6778999999999999999999753

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.65  E-value=1.1e-15  Score=151.46  Aligned_cols=154  Identities=15%  Similarity=0.181  Sum_probs=109.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhh----------------------------hcc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKR----------------------------KEE  343 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~----------------------------~~~  343 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++......                            ...
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            5689999999999999888877755899999999999999988754321                            000


Q ss_pred             ccccccceeehhhhccCCCCC---CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhh
Q psy17742        344 ARPYRRNVFSAELRSQYEDKA---LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRH  420 (597)
Q Consensus       344 ~~~~~~d~F~~dl~e~l~~~~---~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~  420 (597)
                      .    ..+...++....+...   ++||+|+|.+++|++..+..++..+|+++.++|||||+|++..+..          
T Consensus       136 v----~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~----------  201 (265)
T 2i62_A          136 I----KQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK----------  201 (265)
T ss_dssp             E----EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS----------
T ss_pred             h----eeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC----------
Confidence            0    0133444333222122   5799999999999765566899999999999999999999987321          


Q ss_pred             ccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        421 QSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       421 ~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                            ...|..  ..                    .....+.++.+.+.++++++||+++....+.
T Consensus       202 ------~~~~~~--~~--------------------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          202 ------SSYYMI--GE--------------------QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             ------CCEEEE--TT--------------------EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ------CceEEc--CC--------------------ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence                  111110  00                    0011234678899999999999999887643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.64  E-value=3.5e-15  Score=144.80  Aligned_cols=173  Identities=14%  Similarity=0.067  Sum_probs=112.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++....+...... ....+...+. ..++...++||+|+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~-~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTG-GKAEFKVENA-SSLSFHDSSFDFAV  106 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSS-CEEEEEECCT-TSCCSCTTCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccC-cceEEEEecc-cccCCCCCceeEEE
Confidence            578999999999999999998874 99999999999999999876654321100 0001233332 23344456799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH----HHHHhhhccCccCCceEEEEecCCCCCCCCCccc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI----MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA  447 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i----~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~  447 (597)
                      +..++||+ .+......+|+++.++|||||+|++..+.....    ...+...-........+.......       ...
T Consensus       107 ~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  178 (235)
T 3sm3_A          107 MQAFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPET-------GET  178 (235)
T ss_dssp             EESCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTT-------CCE
T ss_pred             EcchhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEeccccc-------CCc
Confidence            99999997 555566699999999999999999987654211    111111000000111111111110       000


Q ss_pred             ceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        448 KYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       448 ~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                                ....+.++.+.+.++++++||+++....
T Consensus       179 ----------~~~~~~~~~~~l~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          179 ----------EFIAHHFTEKELVFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             ----------EEEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             ----------ceeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence                      1122467899999999999999998764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.64  E-value=4.3e-15  Score=151.58  Aligned_cols=175  Identities=14%  Similarity=0.179  Sum_probs=113.9

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh--ccccccccceeehhhhccCCCCCCceeEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~--~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++++...+..  .+.     .++..++.. ++. .++||+|
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v-----~~~~~d~~~-~~~-~~~fD~v  154 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRC-----TLVQGDMSA-FAL-DKRFGTV  154 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTE-----EEEECBTTB-CCC-SCCEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccce-----EEEeCchhc-CCc-CCCcCEE
Confidence            4589999999999999999887 48999999999999999998765421  111     144444332 333 3679999


Q ss_pred             EEcc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhh-------ccCc--cC------CceEEEEe
Q psy17742        371 SCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRH-------QSAS--FG------NDVYQVQC  434 (597)
Q Consensus       371 i~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~-------~~~~--fg------N~vy~I~F  434 (597)
                      +|.+ ++|++  +.++...+|+++.++|||||+|++.+++...........       ....  +.      ..+..+.+
T Consensus       155 ~~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  232 (299)
T 3g2m_A          155 VISSGSINEL--DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITI  232 (299)
T ss_dssp             EECHHHHTTS--CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEE
T ss_pred             EECCcccccC--CHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEE
Confidence            9764 46665  556789999999999999999999999997653110000       0000  00      00001111


Q ss_pred             cCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        435 LFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       435 ~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                      .......    +...      ......++++.++|.++++++||+++....|.
T Consensus       233 ~~~~~~~----~~~~------~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          233 HPADETT----DPFV------VCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             EESCC------CCCC------EEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             EeccCCC----CcEE------EEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence            1100000    0000      00122346899999999999999999988765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.64  E-value=4.8e-15  Score=142.45  Aligned_cols=157  Identities=12%  Similarity=0.024  Sum_probs=103.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|++    .+... .     .+...++...+  ..++||+|+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~~~-~-----~~~~~d~~~~~--~~~~~D~v~  112 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGLDN-V-----EFRQQDLFDWT--PDRQWDAVF  112 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCCTT-E-----EEEECCTTSCC--CSSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCCCC-e-----EEEecccccCC--CCCceeEEE
Confidence            56799999999999999998887 499999999999999987    11111 1     13444433332  346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH-HHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM-ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~-~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +..++||+  ..+....+|+++.++|||||+|++..++..... ..+..    ..+.....-.+.         .+..|.
T Consensus       113 ~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------~~~~~~  177 (218)
T 3ou2_A          113 FAHWLAHV--PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDD----SEPEVAVRRTLQ---------DGRSFR  177 (218)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC----------------CEEEEECT---------TSCEEE
T ss_pred             EechhhcC--CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhh----cccccceeeecC---------Ccchhh
Confidence            99999998  334468999999999999999999987662110 00000    000111111111         112221


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                              ....+++.+.+.++++++||+++...
T Consensus       178 --------~~~~~~~~~~~~~~l~~aGf~v~~~~  203 (218)
T 3ou2_A          178 --------IVKVFRSPAELTERLTALGWSCSVDE  203 (218)
T ss_dssp             --------EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             --------HhhcCCCHHHHHHHHHHCCCEEEeee
Confidence                    11235788999999999999976554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.63  E-value=9.5e-16  Score=148.68  Aligned_cols=107  Identities=13%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh-----------hhccccccccceeehhhhccC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK-----------RKEEARPYRRNVFSAELRSQY  360 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~-----------~~~~~~~~~~d~F~~dl~e~l  360 (597)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.||+.|+++.....           .....     .+...|+. .+
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~d~~-~l   94 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI-----EIWCGDFF-AL   94 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS-----EEEEECCS-SS
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc-----EEEECccc-cC
Confidence            568999999999999999998885 99999999999999998754210           00011     13334322 23


Q ss_pred             CCCC-CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        361 EDKA-LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       361 ~~~~-~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +... ++||+|++..++||+  +.++...++++++++|||||++++.+
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l--~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CcccCCCEEEEEECcchhhC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            3322 469999999999987  45677789999999999999855544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.63  E-value=1.5e-15  Score=146.60  Aligned_cols=154  Identities=13%  Similarity=0.135  Sum_probs=108.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|+++...             +...++.. ..+...++||+|
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~-------------~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDH-------------VVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSE-------------EEESCTTTCCCCSCTTCEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCc-------------EEEcchhhcCCCCCCCccCEE
Confidence            57899999999999999998886 6999999999999999876421             23333221 133334679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++||+    .++..+|+++.++|+|||++++++++........... ...|..       ..        .|..  
T Consensus        98 ~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~-~~~~~~-------~~--------~~~~--  155 (230)
T 3cc8_A           98 IFGDVLEHL----FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLL-AGNWTY-------TE--------YGLL--  155 (230)
T ss_dssp             EEESCGGGS----SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHH-TTCCCC-------BS--------SSTT--
T ss_pred             EECChhhhc----CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHh-cCCcee-------cc--------CCCC--
Confidence            999999998    5667999999999999999999998875432211110 000100       00        0000  


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                            .......++.+.+.++++++||+++....+.
T Consensus       156 ------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          156 ------DKTHIRFFTFNEMLRMFLKAGYSISKVDRVY  186 (230)
T ss_dssp             ------BTTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ------CcceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence                  0011235788999999999999999877544

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.63  E-value=1.8e-15  Score=148.12  Aligned_cols=169  Identities=15%  Similarity=0.121  Sum_probs=111.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++......         .+...++. .++...++||+|+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------~~~~~d~~-~~~~~~~~fD~v~  112 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGI---------TYERADLD-KLHLPQDSFDLAY  112 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSE---------EEEECCGG-GCCCCTTCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCc---------eEEEcChh-hccCCCCCceEEE
Confidence            5689999999999999999888755999999999999999987643211         13333332 2333346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCc---cCCceEEEEecCCCCCCCCCcccc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSAS---FGNDVYQVQCLFDTSRPPPLFGAK  448 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~---fgN~vy~I~F~~~~~d~~p~fG~~  448 (597)
                      +..++||+    .+...+|+++.++|||||+|+++++++......   .....   .+...+.  ...    ... -+..
T Consensus       113 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~----~~~-~~~~  178 (243)
T 3bkw_A          113 SSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPA---RPGWAIDAEGRRTWP--IDR----YLV-EGPR  178 (243)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCS---SCSCEECTTSCEEEE--ECC----TTC-CEEE
T ss_pred             Eecccccc----chHHHHHHHHHHhcCcCcEEEEEeCCcccccCc---CcceeecCCCceEEe--ecc----ccc-ccce
Confidence            99999998    577899999999999999999999887432110   00000   0000000  000    000 0000


Q ss_pred             eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      ...++.+  .+..|..+.+++.++++++||+++....+
T Consensus       179 ~~~~~~~--~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          179 KTDWLAK--GVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             CTTHHHH--SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             eeeeccC--ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence            0000000  22345568999999999999999987754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.63  E-value=6.8e-15  Score=143.97  Aligned_cols=112  Identities=18%  Similarity=0.274  Sum_probs=88.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..  .+|+|+|+|+.+++.|+++....+...       .+...++.. ++.. ++||+|+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~d~~~-~~~~-~~fD~v~  101 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHV-------DFWVQDMRE-LELP-EPVDAIT  101 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCC-------EEEECCGGG-CCCS-SCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCce-------EEEEcChhh-cCCC-CCcCEEE
Confidence            4589999999999999988876  599999999999999999876544211       133443332 3333 5799999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +.. ++||+ .+..+...+|+++.++|||||+|++++++...+..
T Consensus       102 ~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  145 (243)
T 3d2l_A          102 ILCDSLNYL-QTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMET  145 (243)
T ss_dssp             ECTTGGGGC-CSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHT
T ss_pred             EeCCchhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHH
Confidence            987 89886 56678899999999999999999999999876543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.62  E-value=4.4e-15  Score=143.50  Aligned_cols=143  Identities=16%  Similarity=0.087  Sum_probs=107.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|.++..++..+  ..+|+|+|+|+.+++.|++++...+.....      +...+.. .++...++||+
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~------~~~~d~~-~~~~~~~~fD~  109 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE------VLKSEEN-KIPLPDNTVDF  109 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEE------EEECBTT-BCSSCSSCEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEE------EEecccc-cCCCCCCCeeE
Confidence            57899999999999999988764  359999999999999999998766543211      3333332 33344467999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY  449 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y  449 (597)
                      |++..++||+    .+...+|+++.++|||||++++..+.....                      .        .+.  
T Consensus       110 v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------------------~--------~~~--  153 (219)
T 3dh0_A          110 IFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDWKKEER----------------------D--------KGP--  153 (219)
T ss_dssp             EEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEECSSCC----------------------S--------SSC--
T ss_pred             EEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEeccccc----------------------c--------cCC--
Confidence            9999999998    677899999999999999999975433100                      0        000  


Q ss_pred             eeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                               .....++.+.+.++++++||+++....+
T Consensus       154 ---------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  181 (219)
T 3dh0_A          154 ---------PPEEVYSEWEVGLILEDAGIRVGRVVEV  181 (219)
T ss_dssp             ---------CGGGSCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ---------chhcccCHHHHHHHHHHCCCEEEEEEee
Confidence                     0112467899999999999999987654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.62  E-value=4e-15  Score=145.99  Aligned_cols=142  Identities=18%  Similarity=0.205  Sum_probs=106.4

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|++++...+......     +...++.. ++. .++||+|++
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~-~~~-~~~fD~v~~  138 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFS-----FVKEDVFT-WRP-TELFDLIFD  138 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEE-----EECCCTTT-CCC-SSCEEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceE-----EEECchhc-CCC-CCCeeEEEE
Confidence            4699999999999999888766 489999999999999999987643322221     33444333 222 247999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeee
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFN  452 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~  452 (597)
                      ..++||+  +.++...+|+++.++|||||+|++.......                       .                
T Consensus       139 ~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----------------------~----------------  177 (235)
T 3lcc_A          139 YVFFCAI--EPEMRPAWAKSMYELLKPDGELITLMYPITD-----------------------H----------------  177 (235)
T ss_dssp             ESSTTTS--CGGGHHHHHHHHHHHEEEEEEEEEEECCCSC-----------------------C----------------
T ss_pred             ChhhhcC--CHHHHHHHHHHHHHHCCCCcEEEEEEecccc-----------------------c----------------
Confidence            9999997  3458889999999999999999986543310                       0                


Q ss_pred             ccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        453 LEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       453 L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                          ...+.|.++.+.+.++++++||+++......
T Consensus       178 ----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          178 ----VGGPPYKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             ----CSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             ----CCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence                0011234678999999999999999887654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.62  E-value=7.2e-15  Score=145.16  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=85.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++....+.....      +...+. ..++...++||+|+
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~------~~~~d~-~~~~~~~~~fD~v~   92 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVR------FQQGTA-ESLPFPDDSFDIIT   92 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEE------EEECBT-TBCCSCTTCEEEEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCeE------EEeccc-ccCCCCCCcEEEEE
Confidence            67899999999999999998877 49999999999999999988765433211      333333 33444456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +..++||+    .++..+|+++.++|||||+|++..+.
T Consensus        93 ~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           93 CRYAAHHF----SDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCchhhc----cCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            99999998    67789999999999999999997644

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.62  E-value=1e-14  Score=142.56  Aligned_cols=107  Identities=20%  Similarity=0.273  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++....+ .  .     .+...+.. .++.. ++||+|
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~-----~~~~~d~~-~~~~~-~~fD~v  113 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-K--V-----KYIEADYS-KYDFE-EKYDMV  113 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-T--E-----EEEESCTT-TCCCC-SCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-C--E-----EEEeCchh-ccCCC-CCceEE
Confidence            57899999999999999988773 3599999999999999999876543 1  1     13334332 23333 579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++..++||+  +......+|+++.++|||||+|++..+..
T Consensus       114 ~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          114 VSALSIHHL--EDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             EEeCccccC--CHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            999999998  44455679999999999999999987543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.61  E-value=1e-14  Score=149.98  Aligned_cols=155  Identities=15%  Similarity=0.116  Sum_probs=111.5

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++.+|||||||+|.++..+++. + .+|+|+|+|+.+++.|+++....+...+..     +...++. .++...++||+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~~~~~fD~  188 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRARELRIDDHVR-----SRVCNML-DTPFDKGAVTA  188 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECCTT-SCCCCTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCceE-----EEECChh-cCCCCCCCEeE
Confidence            36789999999999999998877 5 589999999999999999988766442221     3344332 34444468999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY  449 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y  449 (597)
                      |++..++||+    + +..+|+++.++|||||+|++.++........        . ...            ...+...|
T Consensus       189 V~~~~~l~~~----~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~-~~~------------~~~~~~~~  242 (312)
T 3vc1_A          189 SWNNESTMYV----D-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ--------P-SKW------------VSQINAHF  242 (312)
T ss_dssp             EEEESCGGGS----C-HHHHHHHHHHHEEEEEEEEEEEEEECTTTCS--------C-CHH------------HHHHHHHH
T ss_pred             EEECCchhhC----C-HHHHHHHHHHHcCCCcEEEEEEccccccccc--------h-hHH------------HHHHHhhh
Confidence            9999999997    2 8899999999999999999987544211000        0 000            00000000


Q ss_pred             eeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742        450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS  488 (597)
Q Consensus       450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e  488 (597)
                      .          -.+.+.+.+.++++++||+++....+..
T Consensus       243 ~----------~~~~s~~~~~~~l~~aGf~~~~~~~~~~  271 (312)
T 3vc1_A          243 E----------CNIHSRREYLRAMADNRLVPHTIVDLTP  271 (312)
T ss_dssp             T----------CCCCBHHHHHHHHHTTTEEEEEEEECHH
T ss_pred             c----------CCCCCHHHHHHHHHHCCCEEEEEEeCCH
Confidence            0          0246789999999999999999998875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.61  E-value=1.1e-15  Score=146.53  Aligned_cols=107  Identities=12%  Similarity=0.098  Sum_probs=85.6

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ  373 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~  373 (597)
                      .+|||||||+|.++..++.....+|+|+|+|+.+++.|++++...+...+..     +...+.. .++...++||+|++.
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-----~~~~d~~-~~~~~~~~~D~v~~~  118 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQ-----IVQGDVH-NIPIEDNYADLIVSR  118 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECBTT-BCSSCTTCEEEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceE-----EEEcCHH-HCCCCcccccEEEEC
Confidence            3999999999999999887643599999999999999999987765432221     3333332 334444679999999


Q ss_pred             cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .++||+    .++..+|+++.++|||||++++..+..
T Consensus       119 ~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          119 GSVFFW----EDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             SCGGGC----SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             chHhhc----cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            999998    678899999999999999999987655

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.61  E-value=1.5e-14  Score=140.26  Aligned_cols=109  Identities=18%  Similarity=0.261  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhc----cccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKE----EARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~----~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|++++...+...    ..     .+...++ ..++...++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v-----~~~~~d~-~~~~~~~~~  102 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI-----SLFQSSL-VYRDKRFSG  102 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE-----EEEECCS-SSCCGGGTT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcce-----EEEeCcc-cccccccCC
Confidence            568999999999999999988653 599999999999999999876544321    11     1333333 223333467


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ||+|+|..++||+  ..++...+|+++.++|||||+|+ .+++
T Consensus       103 fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~~i-~~~~  142 (219)
T 3jwg_A          103 YDAATVIEVIEHL--DENRLQAFEKVLFEFTRPQTVIV-STPN  142 (219)
T ss_dssp             CSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEE-EEEB
T ss_pred             CCEEEEHHHHHhC--CHHHHHHHHHHHHHhhCCCEEEE-Eccc
Confidence            9999999999998  44566899999999999999554 4554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.61  E-value=4.8e-15  Score=146.65  Aligned_cols=148  Identities=20%  Similarity=0.253  Sum_probs=105.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....+...+..     +...+.. .++. .++||+|+
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~-~~~fD~V~  108 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVH-----FIHNDAA-GYVA-NEKCDVAA  108 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEESCCT-TCCC-SSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceE-----EEECChH-hCCc-CCCCCEEE
Confidence            678999999999999999887633589999999999999999987665432221     3333332 2333 46799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH--HHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI--MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY  449 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i--~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y  449 (597)
                      |..++||+    .++..+|++++++|||||+|++..+.....  ...+..    .+.                   +   
T Consensus       109 ~~~~~~~~----~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~-------------------~---  158 (256)
T 1nkv_A          109 CVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ----ACG-------------------V---  158 (256)
T ss_dssp             EESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH----TTT-------------------C---
T ss_pred             ECCChHhc----CCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH----HHh-------------------c---
Confidence            99999997    577899999999999999999986532100  000000    000                   0   


Q ss_pred             eeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                              .....+++.+.+.++++++||+++...
T Consensus       159 --------~~~~~~~~~~~~~~~l~~aGf~~~~~~  185 (256)
T 1nkv_A          159 --------SSTSDFLTLPGLVGAFDDLGYDVVEMV  185 (256)
T ss_dssp             --------SCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             --------ccccccCCHHHHHHHHHHCCCeeEEEE
Confidence                    001135788999999999999988754

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.60  E-value=2.9e-15  Score=160.13  Aligned_cols=148  Identities=14%  Similarity=0.199  Sum_probs=111.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++    +.....     ..|..+....++...++||+|+
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~-----~~~~~~~~~~l~~~~~~fD~I~  176 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRT-----DFFEKATADDVRRTEGPANVIY  176 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEEC-----SCCSHHHHHHHHHHHCCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcce-----eeechhhHhhcccCCCCEEEEE
Confidence            578999999999999999998875 999999999999999876    111111     1444443334443346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||+    +++..+|++++++|||||+|++.+++...+.....      |.. +               +...   
T Consensus       177 ~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------~~~-~---------------~~~~---  227 (416)
T 4e2x_A          177 AANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTS------FDQ-I---------------FDEH---  227 (416)
T ss_dssp             EESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTC------GGG-C---------------STTC---
T ss_pred             ECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcc------hhh-h---------------hhhh---
Confidence            99999998    68999999999999999999999999866543211      100 0               0001   


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                               .++++.+.+.++++++||+++....+.
T Consensus       228 ---------~~~~s~~~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          228 ---------FFLFSATSVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             ---------CEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             ---------hhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence                     123678999999999999999877653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.60  E-value=1.5e-14  Score=143.12  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++... .... .     .+...+. ..++...++||+|+
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~-~~~~-~-----~~~~~d~-~~~~~~~~~fD~v~  109 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAG-VDRK-V-----QVVQADA-RAIPLPDESVHGVI  109 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTT-SCTT-E-----EEEESCT-TSCCSCTTCEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhc-cCCc-e-----EEEEccc-ccCCCCCCCeeEEE
Confidence            57899999999999999998876 5999999999999999988621 1111 1     1333333 23444456799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +..++||+    .+...+|+++.++|||||+|++....
T Consensus       110 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (263)
T 2yqz_A          110 VVHLWHLV----PDWPKVLAEAIRVLKPGGALLEGWDQ  143 (263)
T ss_dssp             EESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCchhhc----CCHHHHHHHHHHHCCCCcEEEEEecC
Confidence            99999998    67889999999999999999988543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.60  E-value=2.9e-14  Score=138.22  Aligned_cols=110  Identities=16%  Similarity=0.251  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhc----cccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKE----EARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~----~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|++++...+...    ..     .+...++ ...+...++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v-----~~~~~d~-~~~~~~~~~  102 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERL-----QLIQGAL-TYQDKRFHG  102 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTE-----EEEECCT-TSCCGGGCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcce-----EEEeCCc-ccccccCCC
Confidence            56899999999999999998865 3599999999999999999876543221    11     1333333 223333357


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ||+|+|..++||+  +.++...+|+++.++|||||+|+++ ++.
T Consensus       103 fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~li~~-~~~  143 (217)
T 3jwh_A          103 YDAATVIEVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT-PNI  143 (217)
T ss_dssp             CSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEEEE-EBH
T ss_pred             cCEEeeHHHHHcC--CHHHHHHHHHHHHHHcCCCEEEEEc-cCc
Confidence            9999999999998  4456789999999999999955554 443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.60  E-value=9.4e-15  Score=144.42  Aligned_cols=107  Identities=27%  Similarity=0.374  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+...       .+...++.. ++.. ++||+|+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v-------~~~~~d~~~-~~~~-~~fD~v~  110 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKI-------EFLQGDVLE-IAFK-NEFDAVT  110 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCC-------EEEESCGGG-CCCC-SCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCce-------EEEECChhh-cccC-CCccEEE
Confidence            467999999999999999998875 99999999999999999876654321       134444332 3332 4799999


Q ss_pred             Eccc-hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~v-Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |.++ +++.  +.++...+|+++.++|||||+|++.+++.
T Consensus       111 ~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~li~~~~~~  148 (252)
T 1wzn_A          111 MFFSTIMYF--DEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (252)
T ss_dssp             ECSSGGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             EcCCchhcC--CHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence            9865 4443  55788999999999999999999998874

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.59  E-value=1.5e-15  Score=151.46  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...           .+...++.. ++. .++||+|+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~d~~~-~~~-~~~fD~v~  115 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDA-----------VLHHGDMRD-FSL-GRRFSAVT  115 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCTTS-----------EEEECCTTT-CCC-SCCEEEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCC-----------EEEECChHH-CCc-cCCcCEEE
Confidence            468999999999999999988874 8999999999999999886411           133343322 333 36799999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |.+ ++||+ .+..+...+|+++.++|||||+|++...
T Consensus       116 ~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          116 CMFSSIGHL-AGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             ECTTGGGGS-CHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EcCchhhhc-CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            998 99997 4556888999999999999999999754

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.58  E-value=2.1e-14  Score=143.97  Aligned_cols=108  Identities=22%  Similarity=0.261  Sum_probs=87.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|+++....+.....      ++..+.. .++...++||+|
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~------~~~~d~~-~~~~~~~~fD~v  109 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVK------FLQANIF-SLPFEDSSFDHI  109 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEECCGG-GCCSCTTCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE------EEEcccc-cCCCCCCCeeEE
Confidence            67899999999999999988774 369999999999999999998766543211      3444433 344445689999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++..++||+    .++..+|+++.++|||||+|++..++.
T Consensus       110 ~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          110 FVCFVLEHL----QSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             EEechhhhc----CCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999998    667799999999999999999987654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=1.8e-14  Score=145.34  Aligned_cols=151  Identities=21%  Similarity=0.265  Sum_probs=106.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++...      .     .+...+.. .++. .++||+|+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~------~-----~~~~~d~~-~~~~-~~~fD~v~  122 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPH------L-----HFDVADAR-NFRV-DKPLDAVF  122 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTT------S-----CEEECCTT-TCCC-SSCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCC------C-----EEEECChh-hCCc-CCCcCEEE
Confidence            56899999999999999998865 5999999999999999887511      1     13333322 2443 35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH---HHHHHhhhccCccCCceEEEEecCCCCCCCCCcccc
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ---IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK  448 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~---i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~  448 (597)
                      +..++||+    .++..+|+++.++|||||+|++.+++...   +...+...-. ..+-.     +..            
T Consensus       123 ~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~------------  180 (279)
T 3ccf_A          123 SNAMLHWV----KEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALE-TLGIH-----NPQ------------  180 (279)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHH-HHTCC-----CGG------------
T ss_pred             EcchhhhC----cCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHH-hcCCc-----ccc------------
Confidence            99999998    67789999999999999999999887532   2222211100 00000     000            


Q ss_pred             eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                              ...+-++.+.+.+.++++++||+++....+
T Consensus       181 --------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          181 --------ALNPWYFPSIGEYVNILEKQGFDVTYAALF  210 (279)
T ss_dssp             --------GGCCCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred             --------CcCceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence                    011223567899999999999999876543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.58  E-value=3.2e-15  Score=143.21  Aligned_cols=158  Identities=15%  Similarity=0.145  Sum_probs=106.0

Q ss_pred             CCCEEEEECCCCChhHH-HHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDML-KWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~-~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|..+. .+...+ .+|+|+|+|+.|++.|+++....+...       .+...++. .++...++||+|
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~d~~-~~~~~~~~fD~v   93 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKL-------NISKGDIR-KLPFKDESMSFV   93 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTCCC-------CEEECCTT-SCCSCTTCEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCce-------EEEECchh-hCCCCCCceeEE
Confidence            56899999999999844 445555 499999999999999999876544221       13333332 234444679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++||+  +..+...+++++.++|||||++++..++......    .....++...|..                  
T Consensus        94 ~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----~~~~~~~~~~~~~------------------  149 (209)
T 2p8j_A           94 YSYGTIFHM--RKNDVKEAIDEIKRVLKPGGLACINFLTTKDERY----NKGEKIGEGEFLQ------------------  149 (209)
T ss_dssp             EECSCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTT----TCSEEEETTEEEE------------------
T ss_pred             EEcChHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEecccchhc----cchhhhcccccee------------------
Confidence            999999987  4678999999999999999999998876532100    0000111111211                  


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                        +.+.......+++.+++.+++.++||...+..
T Consensus       150 --~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~  181 (209)
T 2p8j_A          150 --LERGEKVIHSYVSLEEADKYFKDMKVLFKEDR  181 (209)
T ss_dssp             --CC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred             --ccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence              11111111235788899999999999877654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.57  E-value=1.9e-14  Score=146.56  Aligned_cols=152  Identities=15%  Similarity=0.120  Sum_probs=98.4

Q ss_pred             CCCEEEEECCCCChhHHH----HHhc-CCCE--EEEEeCChHHHHHHHHHHHhh-hhhcccccccccee-ehhhhccCC-
Q psy17742        292 SPIKVLDMGSGKGGDMLK----WING-GVKH--VVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVF-SAELRSQYE-  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~----la~~-g~~~--V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F-~~dl~e~l~-  361 (597)
                      ++.+|||||||+|..+..    ++.. ....  ++|+|+|+.|++.|+++.... +.....     ..+ ..+. +.++ 
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~-----~~~~~~~~-~~~~~  125 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVK-----FAWHKETS-SEYQS  125 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEE-----EEEECSCH-HHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcce-----EEEEecch-hhhhh
Confidence            567999999999975543    3332 2233  499999999999999987543 111100     011 1111 1111 


Q ss_pred             -----CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecC
Q psy17742        362 -----DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLF  436 (597)
Q Consensus       362 -----~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~  436 (597)
                           ...++||+|+|.+++||+    +++..+|++++++|||||+|++..++.+..+..+...    +...+     ..
T Consensus       126 ~~~~~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~----~~~~~-----~~  192 (292)
T 2aot_A          126 RMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKK----YGSRF-----PQ  192 (292)
T ss_dssp             HHHTTTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHH----HGGGS-----CC
T ss_pred             hhccccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHH----HHHhc-----cC
Confidence                 223579999999999998    7889999999999999999999876653222211110    00000     00


Q ss_pred             CCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEE
Q psy17742        437 DTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILK  483 (597)
Q Consensus       437 ~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~  483 (597)
                               +.            ....++.+.+.++++++||+++..
T Consensus       193 ---------~~------------~~~~~~~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          193 ---------DD------------LCQYITSDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             ---------CT------------TCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             ---------CC------------cccCCCHHHHHHHHHHCCCceEEE
Confidence                     00            012467889999999999998864

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.57  E-value=3e-14  Score=146.35  Aligned_cols=171  Identities=13%  Similarity=0.150  Sum_probs=114.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.|+++....+.....     .+...+. ..++   ++||+|
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v-----~~~~~d~-~~~~---~~fD~v  159 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSR-----QVLLQGW-EDFA---EPVDRI  159 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCE-----EEEESCG-GGCC---CCCSEE
T ss_pred             CcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCce-----EEEECCh-HHCC---CCcCEE
Confidence            6789999999999999998876 64 9999999999999999998765443222     1333333 2233   579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++||+  ..+++..+|+++.++|||||+|++..+................+...    .+..        +-..+.
T Consensus       160 ~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~  225 (318)
T 2fk8_A          160 VSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETA----RFIK--------FIVTEI  225 (318)
T ss_dssp             EEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHH----HHHH--------HHHHHT
T ss_pred             EEeChHHhc--CHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhcccccccccc----chhh--------HHHHhc
Confidence            999999997  33578899999999999999999988765322110000000000000    0000        000000


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK  493 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~  493 (597)
                      |       ...++.+.+.+.++++++||+++....+...|...
T Consensus       226 ~-------~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~~  261 (318)
T 2fk8_A          226 F-------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKT  261 (318)
T ss_dssp             S-------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHHH
T ss_pred             C-------CCCcCCCHHHHHHHHHhCCCEEEEEEecchhHHHH
Confidence            0       00134688999999999999999988887665433

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.57  E-value=1.1e-14  Score=146.96  Aligned_cols=144  Identities=14%  Similarity=0.067  Sum_probs=101.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh---------h-------hhccccccccceeehh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL---------K-------RKEEARPYRRNVFSAE  355 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~---------~-------~~~~~~~~~~d~F~~d  355 (597)
                      ++.+|||+|||+|.++..+++.|. +|+|||+|+.||+.|+++....         +       .....     .++..|
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~D  141 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-----SLYCCS  141 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-----EEEESC
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-----EEEECc
Confidence            568999999999999999999886 9999999999999998775310         0       00111     134444


Q ss_pred             hhccCCCC-CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEe
Q psy17742        356 LRSQYEDK-ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQC  434 (597)
Q Consensus       356 l~e~l~~~-~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F  434 (597)
                      +.. ++.. .++||+|++..+++++  +.++...+++++.++|||||+|++.+....                       
T Consensus       142 ~~~-l~~~~~~~FD~V~~~~~l~~l--~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~-----------------------  195 (252)
T 2gb4_A          142 IFD-LPRANIGKFDRIWDRGALVAI--NPGDHDRYADIILSLLRKEFQYLVAVLSYD-----------------------  195 (252)
T ss_dssp             TTT-GGGGCCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEEEEECC-----------------------
T ss_pred             ccc-CCcccCCCEEEEEEhhhhhhC--CHHHHHHHHHHHHHHcCCCeEEEEEEEecC-----------------------
Confidence            332 3322 2579999999999987  445677899999999999999975443210                       


Q ss_pred             cCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        435 LFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       435 ~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                       ..   .               ..-|.|.++.+++.+++.. +|+++....+.
T Consensus       196 -~~---~---------------~~g~~~~~~~~el~~~l~~-~f~v~~~~~~~  228 (252)
T 2gb4_A          196 -PT---K---------------HAGPPFYVPSAELKRLFGT-KCSMQCLEEVD  228 (252)
T ss_dssp             -TT---S---------------CCCSSCCCCHHHHHHHHTT-TEEEEEEEEEE
T ss_pred             -Cc---c---------------CCCCCCCCCHHHHHHHhhC-CeEEEEEeccc
Confidence             00   0               0011234688999999987 59998776543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.57  E-value=3e-14  Score=137.95  Aligned_cols=111  Identities=22%  Similarity=0.224  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++....+..  .     .+...++.. ++...++||+|+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~--~-----~~~~~d~~~-~~~~~~~~D~v~  108 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN--V-----EFIVGDARK-LSFEDKTFDYVI  108 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--C-----EEEECCTTS-CCSCTTCEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCC--c-----eEEECchhc-CCCCCCcEEEEE
Confidence            368999999999999999888875 9999999999999999987655421  1     133343322 333345799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      +..++|+.  +..+...+|+++.++|||||+|++..++....
T Consensus       109 ~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  148 (227)
T 1ve3_A          109 FIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLREL  148 (227)
T ss_dssp             EESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             EcCchHhC--CHHHHHHHHHHHHHHcCCCcEEEEEecChHHH
Confidence            99995543  44788999999999999999999999886543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.56  E-value=7e-14  Score=136.07  Aligned_cols=141  Identities=14%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.+|||||||+|.++..++..     +|+|+|+.+++.|+++    ...         +...++ ..++...++||+|++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~~~---------~~~~d~-~~~~~~~~~fD~v~~  108 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----GVF---------VLKGTA-ENLPLKDESFDFALM  108 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----TCE---------EEECBT-TBCCSCTTCEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----CCE---------EEEccc-ccCCCCCCCeeEEEE
Confidence            578999999999999877643     9999999999999886    111         333332 223444467999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeee
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFN  452 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~  452 (597)
                      ..++||+    .++..+|+++.++|+|||+|++++++.......+....  ..+.               +.+       
T Consensus       109 ~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~---------------~~~-------  160 (219)
T 1vlm_A          109 VTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN--KEKS---------------VFY-------  160 (219)
T ss_dssp             ESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT--TTC----------------CCS-------
T ss_pred             cchHhhc----cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH--hcCc---------------chh-------
Confidence            9999998    66789999999999999999999988754433222110  0000               000       


Q ss_pred             ccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        453 LEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       453 L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                            ....+++.+.+.++++++||+++.....
T Consensus       161 ------~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          161 ------KNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             ------TTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ------cccccCCHHHHHHHHHHCCCeEEEEecc
Confidence                  0123578899999999999999987654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.56  E-value=4e-14  Score=143.66  Aligned_cols=106  Identities=16%  Similarity=0.215  Sum_probs=85.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|.++..++...  ..+|+|+|+|+.+++.|+++....+...       .+...+.. .++.. ++||+
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v-------~~~~~d~~-~~~~~-~~fD~   92 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDS-------EFLEGDAT-EIELN-DKYDI   92 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEE-------EEEESCTT-TCCCS-SCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCce-------EEEEcchh-hcCcC-CCeeE
Confidence            57899999999999999988762  2599999999999999999877654321       13344433 34443 57999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++..++||+    .++..+|++++++|||||+|++..++.
T Consensus        93 v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           93 AICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHW  129 (284)
T ss_dssp             EEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             EEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecch
Confidence            9999999998    677899999999999999999999883

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.56  E-value=3e-15  Score=151.60  Aligned_cols=99  Identities=15%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||||||+|..+..++..+ .+|+|+|+|+.||+.|+++.   +    .     .+...+ .+.++.++++||+|+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~~~---~----v-----~~~~~~-~e~~~~~~~sfD~v~  104 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALRHP---R----V-----TYAVAP-AEDTGLPPASVDVAI  104 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCCCT---T----E-----EEEECC-TTCCCCCSSCEEEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhhcC---C----c-----eeehhh-hhhhcccCCcccEEE
Confidence            35789999999999999999887 59999999999998876421   0    1     022322 344555567899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |..++||+     +...++++++|+|||||+|++...+
T Consensus       105 ~~~~~h~~-----~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A          105 AAQAMHWF-----DLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             ECSCCTTC-----CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EeeehhHh-----hHHHHHHHHHHHcCCCCEEEEEECC
Confidence            99999997     3568999999999999999887643

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.55  E-value=2.9e-14  Score=146.13  Aligned_cols=111  Identities=13%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChhHHHHH--hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la--~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..++  .....+|+|+|+|+.+++.|+++....+...+..     +...+.. .++.. ++||+
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~~-~~fD~  190 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQIT-----LHRQDAW-KLDTR-EGYDL  190 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEE-----EEECCGG-GCCCC-SCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceE-----EEECchh-cCCcc-CCeEE
Confidence            57899999999999999874  3334699999999999999999987765543321     3444433 23433 67999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++..++||+ .+......+|+++.++|||||+|++.....
T Consensus       191 v~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          191 LTSNGLNIYE-PDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EECCSSGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             EEECChhhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            9999999986 555666679999999999999999987554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.55  E-value=6.7e-15  Score=156.44  Aligned_cols=110  Identities=17%  Similarity=0.170  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhh-------ccccccccceeehhhhcc--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRK-------EEARPYRRNVFSAELRSQ--Y  360 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~-------~~~~~~~~d~F~~dl~e~--l  360 (597)
                      ++.+|||||||+|.++..++..  ...+|+|+|+|+.|++.|+++.......       ...     .+...++...  +
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v-----~~~~~d~~~l~~~  157 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV-----RFLKGFIENLATA  157 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCE-----EEEESCTTCGGGC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCce-----EEEEccHHHhhhc
Confidence            5789999999999999888764  2359999999999999999987654211       111     1333332221  1


Q ss_pred             ---CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        361 ---EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       361 ---~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                         +...++||+|++..++||+    .++..+|++++++|||||+|++..+..
T Consensus       158 ~~~~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          158 EPEGVPDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             BSCCCCTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence               3444679999999999998    678899999999999999999976544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.55  E-value=4.3e-14  Score=137.88  Aligned_cols=104  Identities=15%  Similarity=0.257  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....           .+...++.. ++. .++||+|+
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~-----------~~~~~d~~~-~~~-~~~~D~v~  105 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDA-----------TLHQGDMRD-FRL-GRKFSAVV  105 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTTC-----------EEEECCTTT-CCC-SSCEEEEE
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCC-----------EEEECCHHH-ccc-CCCCcEEE
Confidence            568999999999999999888774 9999999999999999875221           133333322 333 35799999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |.+ ++||+ .+.++...+|+++.++|||||+|+++.++.
T Consensus       106 ~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          106 SMFSSVGYL-KTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             ECTTGGGGC-CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             EcCchHhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            765 78886 566788999999999999999999987655

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.55  E-value=2.5e-14  Score=138.13  Aligned_cols=109  Identities=19%  Similarity=0.253  Sum_probs=87.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|+++......   .     .+...++.. ++ ..++||+|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~---~-----~~~~~d~~~-~~-~~~~fD~v~  119 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSH---I-----SWAATDILQ-FS-TAELFDLIV  119 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCSS---E-----EEEECCTTT-CC-CSCCEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCCC---e-----EEEEcchhh-CC-CCCCccEEE
Confidence            56899999999999999998887 4999999999999999998765331   1     134444333 22 246799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~  412 (597)
                      |..++||+ .+......+|+++.++|||||+|+++++....
T Consensus       120 ~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  159 (216)
T 3ofk_A          120 VAEVLYYL-EDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT  159 (216)
T ss_dssp             EESCGGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             EccHHHhC-CCHHHHHHHHHHHHHHcCCCCEEEEEecCCCc
Confidence            99999997 55566788999999999999999998877653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=1.7e-14  Score=134.15  Aligned_cols=132  Identities=12%  Similarity=0.070  Sum_probs=100.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+++.+++.|+++..      ..     .+...+    ++...++||+|+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~v-----~~~~~d----~~~~~~~~D~v~   80 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD------SV-----ITLSDP----KEIPDNSVDFIL   80 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT------TS-----EEESSG----GGSCTTCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC------Cc-----EEEeCC----CCCCCCceEEEE
Confidence            567999999999999999998874 99999999999999998821      11     133333    333346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++||+    ++...+++++.++|||||++++..+....                              ..++..   
T Consensus        81 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------------------------------~~~~~~---  123 (170)
T 3i9f_A           81 FANSFHDM----DDKQHVISEVKRILKDDGRVIIIDWRKEN------------------------------TGIGPP---  123 (170)
T ss_dssp             EESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEECSSC------------------------------CSSSSC---
T ss_pred             Eccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEcCccc------------------------------cccCch---
Confidence            99999998    67789999999999999999997543310                              000100   


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                              ....++.+.+.++++  ||+++....+
T Consensus       124 --------~~~~~~~~~~~~~l~--Gf~~~~~~~~  148 (170)
T 3i9f_A          124 --------LSIRMDEKDYMGWFS--NFVVEKRFNP  148 (170)
T ss_dssp             --------GGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred             --------HhhhcCHHHHHHHHh--CcEEEEccCC
Confidence                    012367889999999  9999988764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.54  E-value=9.7e-15  Score=140.52  Aligned_cols=105  Identities=18%  Similarity=0.159  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+   +..+|+|+|+|+.|++.|+++...  .         .+...+. ..++...++||+|+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~--~---------~~~~~d~-~~~~~~~~~fD~v~  100 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPE--A---------TWVRAWG-EALPFPGESFDVVL  100 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTT--S---------EEECCCT-TSCCSCSSCEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCC--c---------EEEEccc-ccCCCCCCcEEEEE
Confidence            5689999999999999877   534899999999999999987611  1         0223332 23444446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +..++||+    +++..+|+++.++|||||++++++++......
T Consensus       101 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~  140 (211)
T 2gs9_A          101 LFTTLEFV----EDVERVLLEARRVLRPGGALVVGVLEALSPWA  140 (211)
T ss_dssp             EESCTTTC----SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHH
T ss_pred             EcChhhhc----CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHH
Confidence            99999998    57789999999999999999999998865433

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.54  E-value=3.6e-14  Score=140.31  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++...      .     .+...+.. .++ ..++||+|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~------~-----~~~~~d~~-~~~-~~~~fD~v   99 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN------T-----NFGKADLA-TWK-PAQKADLL   99 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTT------S-----EEEECCTT-TCC-CSSCEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCC------c-----EEEECChh-hcC-ccCCcCEE
Confidence            56899999999999999988761 35899999999999999987211      1     13333332 233 34679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++..++||+    .++..+|+++.++|||||+|++.+++.
T Consensus       100 ~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A          100 YANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             EEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             EEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            999999998    678899999999999999999998764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.53  E-value=1.4e-13  Score=129.10  Aligned_cols=128  Identities=19%  Similarity=0.162  Sum_probs=98.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.+++.|+++....           .+...++.. ++.+.++||+|+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~-----------~~~~~d~~~-~~~~~~~~D~i~  112 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPEA-----------RWVVGDLSV-DQISETDFDLIV  112 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTS-----------EEEECCTTT-SCCCCCCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCC-----------cEEEccccc-CCCCCCceeEEE
Confidence            57899999999999999998887 49999999999999999876321           133333222 233346799999


Q ss_pred             Ec-cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        372 CQ-FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       372 ~~-~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      +. .++||+  +.++...+|+++.++|+|||++++.+++..                                       
T Consensus       113 ~~~~~~~~~--~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---------------------------------------  151 (195)
T 3cgg_A          113 SAGNVMGFL--AEDGREPALANIHRALGADGRAVIGFGAGR---------------------------------------  151 (195)
T ss_dssp             ECCCCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEETTS---------------------------------------
T ss_pred             ECCcHHhhc--ChHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------------------------------
Confidence            98 678776  556788999999999999999999764320                                       


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                                  .++.+.+.++++++||+++....
T Consensus       152 ------------~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          152 ------------GWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             ------------SCCHHHHHHHHHHHTEEEEEEES
T ss_pred             ------------CcCHHHHHHHHHHcCCEEeeeec
Confidence                        13567888999999999987653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.52  E-value=5e-14  Score=134.58  Aligned_cols=143  Identities=20%  Similarity=0.251  Sum_probs=103.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++ +|||||||+|.++..++..+. +|+|+|+|+.+++.|++++...+....       +...++. .++...++||+|+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-------~~~~d~~-~~~~~~~~fD~v~   99 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKIT-------TVQSNLA-DFDIVADAWEGIV   99 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEE-------EECCBTT-TBSCCTTTCSEEE
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceE-------EEEcChh-hcCCCcCCccEEE
Confidence            45 999999999999999988875 999999999999999998876543211       3333322 2333346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +.+.  |.  +..+...+|+++.++|||||+|++.+++.....          ++         .    ..+        
T Consensus       100 ~~~~--~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----------~~---------~----~~~--------  144 (202)
T 2kw5_A          100 SIFC--HL--PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----------YN---------T----GGP--------  144 (202)
T ss_dssp             EECC--CC--CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG----------GT---------S----CCS--------
T ss_pred             EEhh--cC--CHHHHHHHHHHHHHhcCCCcEEEEEEecccccc----------CC---------C----CCC--------
Confidence            9642  32  457889999999999999999999988764321          00         0    000        


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR  487 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~  487 (597)
                            ..+.+.++.+++.++++  ||+++....+.
T Consensus       145 ------~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~  172 (202)
T 2kw5_A          145 ------KDLDLLPKLETLQSELP--SLNWLIANNLE  172 (202)
T ss_dssp             ------SSGGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred             ------CcceeecCHHHHHHHhc--CceEEEEEEEE
Confidence                  01234688999999999  99999876543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.52  E-value=7.1e-14  Score=142.99  Aligned_cols=115  Identities=20%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhh-----------------------------
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRK-----------------------------  341 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~-----------------------------  341 (597)
                      ++.+|||||||+|.++..++.. +..+|+|+|+|+.||+.|+++.......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            4689999999999999998876 3469999999999999999876543211                             


Q ss_pred             ----------------------------ccccccccceeehhhhcc----CCCCCCceeEEEEccchhhhc--cCHHHHH
Q psy17742        342 ----------------------------EEARPYRRNVFSAELRSQ----YEDKALELDLVSCQFCIHYSF--ESVQQAR  387 (597)
Q Consensus       342 ----------------------------~~~~~~~~d~F~~dl~e~----l~~~~~sFDvVi~~~vLh~lF--es~~d~~  387 (597)
                                                  .+.     .+...+....    ++...++||+|+|..+++|+.  .+...+.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v-----~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~  200 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNV-----VFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK  200 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTE-----EEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccc-----eEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHH
Confidence                                        011     1222222111    112346799999999997761  0334889


Q ss_pred             HHHHHHHHhccCCcEEEEEeCChh
Q psy17742        388 CMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       388 ~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      .+|++++++|||||+|++......
T Consensus       201 ~~l~~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          201 RMFRRIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHHHHHHEEEEEEEEEECCCHH
T ss_pred             HHHHHHHHHhCCCcEEEEecCCch
Confidence            999999999999999999876554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.52  E-value=6.6e-14  Score=139.93  Aligned_cols=107  Identities=20%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....            +...+.. .++...++||+|+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~------------~~~~d~~-~~~~~~~~fD~v~  119 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKN------------VVEAKAE-DLPFPSGAFEAVL  119 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSC------------EEECCTT-SCCSCTTCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCCC------------EEECcHH-HCCCCCCCEEEEE
Confidence            468999999999999999998874 8999999999999999875410            2233322 2344446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +..+++|..   .++..+|+++.++|||||+|++++++......
T Consensus       120 ~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  160 (260)
T 2avn_A          120 ALGDVLSYV---ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQ  160 (260)
T ss_dssp             ECSSHHHHC---SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHH
T ss_pred             Ecchhhhcc---ccHHHHHHHHHHHcCCCeEEEEEeCChHHHHH
Confidence            988655542   34789999999999999999999999864433

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.51  E-value=6.1e-14  Score=134.16  Aligned_cols=117  Identities=19%  Similarity=0.295  Sum_probs=91.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++.....   ..     .+...+... ++...++||+|+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~i-----~~~~~d~~~-~~~~~~~fD~v~  112 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QL-----RWETMDVRK-LDFPSASFDVVL  112 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCT---TC-----EEEECCTTS-CCSCSSCEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCC---Cc-----EEEEcchhc-CCCCCCcccEEE
Confidence            568999999999999999998876689999999999999999875411   11     133333322 233346799999


Q ss_pred             Eccchhhhc-----------cCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742        372 CQFCIHYSF-----------ESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY  417 (597)
Q Consensus       372 ~~~vLh~lF-----------es~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l  417 (597)
                      +..+++++.           ++..+...+|+++.++|||||+|++..++.......+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  169 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRH  169 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHH
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHH
Confidence            999998874           2356789999999999999999999999987655544

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.51  E-value=2.9e-14  Score=142.76  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.       ..     .+...+. ..++...++||+|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~-----~~~~~d~-~~~~~~~~~fD~v~   99 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QV-----EWFTGYA-ENLALPDKSVDGVI   99 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TE-----EEECCCT-TSCCSCTTCBSEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CC-----EEEECch-hhCCCCCCCEeEEE
Confidence            57899999999999999999876 59999999999999887654       11     1333333 33455456899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..++||+    .++..+|++++++|| ||++++..++.
T Consensus       100 ~~~~l~~~----~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A          100 SILAIHHF----SHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             EcchHhhc----cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            99999998    788899999999999 99888887765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.51  E-value=2.3e-13  Score=136.11  Aligned_cols=159  Identities=15%  Similarity=0.021  Sum_probs=105.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CC-CEEEEEeCChH------HHHHHHHHHHhhhhhccccccccceeehh-h-hccCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GV-KHVVFADIASV------SIEDCKTRYEELKRKEEARPYRRNVFSAE-L-RSQYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~-~~V~GIDiS~~------mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l-~e~l~  361 (597)
                      ++.+|||||||+|.++..++.. +. .+|+|+|+|+.      +++.|++++...+...+..     +...+ . ...++
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~  117 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLT-----VHFNTNLSDDLGP  117 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEE-----EECSCCTTTCCGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceE-----EEECChhhhccCC
Confidence            6789999999999999998876 32 59999999997      9999999987654422221     22222 1 12233


Q ss_pred             CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh--------HHHHHHhhhccCccCCceEEEE
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN--------QIMARYRRHQSASFGNDVYQVQ  433 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~--------~i~~~l~~~~~~~fgN~vy~I~  433 (597)
                      ...++||+|++..++||+    .+...+++.+.++++|||++++......        .+...+.......+        
T Consensus       118 ~~~~~fD~v~~~~~l~~~----~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  185 (275)
T 3bkx_A          118 IADQHFDRVVLAHSLWYF----ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAI--------  185 (275)
T ss_dssp             GTTCCCSEEEEESCGGGS----SCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHH--------
T ss_pred             CCCCCEEEEEEccchhhC----CCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhc--------
Confidence            344679999999999997    4445678888888888999999765431        11111110000000        


Q ss_pred             ecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        434 CLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       434 F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                       ..                  ........+++.+.+.++++++||+++....+
T Consensus       186 -~~------------------~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          186 -AP------------------SDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             -SC------------------CTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             -cc------------------cccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence             00                  00001113578899999999999999988776

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.48  E-value=1.8e-13  Score=129.59  Aligned_cols=105  Identities=20%  Similarity=0.292  Sum_probs=83.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|++++...+.....      +...++.. ++. .++||+|+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~------~~~~d~~~-~~~-~~~~D~v~  102 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLH------TRVVDLNN-LTF-DRQYDFIL  102 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEE------EEECCGGG-CCC-CCCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcE------EEEcchhh-CCC-CCCceEEE
Confidence            467999999999999999988874 9999999999999999987765432211      33444332 333 46799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..++||+  +.++...+|+++.++|||||++++..
T Consensus       103 ~~~~l~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMFL--EAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EESCGGGS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            99999997  34578899999999999999987754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.47  E-value=1.1e-13  Score=137.57  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=78.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|..+..+++.+..+|+|||+|+.|++.|+++....+....       +...+   +...++  .++||
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~-------~~~~~a~~~~~~~~--~~~FD  130 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVI-------PLKGLWEDVAPTLP--DGHFD  130 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEE-------EEESCHHHHGGGSC--TTCEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceE-------EEeehHHhhccccc--ccCCc
Confidence            6789999999999999998887667899999999999999998776554322       22222   222343  35699


Q ss_pred             EEEE-----ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSC-----QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~-----~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .|+.     .++++|.    .+...++++++|+|||||+|++.
T Consensus       131 ~i~~D~~~~~~~~~~~----~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          131 GILYDTYPLSEETWHT----HQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EEEECCCCCBGGGTTT----HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eEEEeeeecccchhhh----cchhhhhhhhhheeCCCCEEEEE
Confidence            9975     3444444    88999999999999999999874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.47  E-value=2.3e-13  Score=128.34  Aligned_cols=109  Identities=13%  Similarity=0.122  Sum_probs=78.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc--cCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS--QYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e--~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+.....      +...+...  .+.  .++||+
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~------~~~~~~~~l~~~~--~~~fD~   92 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTE------LILDGHENLDHYV--REPIRA   92 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEE------EEESCGGGGGGTC--CSCEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEE------EEeCcHHHHHhhc--cCCcCE
Confidence            57899999999999999999885 69999999999999999998876542111      33322221  122  357999


Q ss_pred             EEEccc-hhh----hccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFC-IHY----SFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~v-Lh~----lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++... +++    +.........+|+++.++|||||+|++.+..
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            988732 221    1113466778999999999999999998764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.46  E-value=1.5e-13  Score=135.46  Aligned_cols=110  Identities=13%  Similarity=0.034  Sum_probs=80.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....+...       .+...+..+.+ +...++||+|
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV-------IPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE-------EEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCe-------EEEecCHHHhhcccCCCceEEE
Confidence            568999999999999999987666689999999999999999876544211       13344332211 2334679999


Q ss_pred             EE-ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SC-QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~-~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++ .++++....+......++++++++|||||+|++...
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            99 665422222346677899999999999999987643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.46  E-value=1.8e-13  Score=131.38  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|+++....+... .     .+...+.....   .++||+|+
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v-----~~~~~d~~~~~---~~~fD~i~  130 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-I-----ALQKTSLLADV---DGKFDLIV  130 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-C-----EEEESSTTTTC---CSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-e-----EEEeccccccC---CCCceEEE
Confidence            568999999999999999888776799999999999999999987665432 1     14444433322   35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +...+|++       ..+++++.++|||||++++..+
T Consensus       131 ~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          131 ANILAEIL-------LDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             EESCHHHH-------HHHGGGSGGGEEEEEEEEEEEE
T ss_pred             ECCcHHHH-------HHHHHHHHHhcCCCCEEEEEec
Confidence            99887653       6889999999999999999643

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.45  E-value=3.1e-13  Score=136.56  Aligned_cols=104  Identities=21%  Similarity=0.230  Sum_probs=84.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++....+...       .++..++.. ++. .++||+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~d~~~-~~~-~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNI-------STALYDINA-ANI-QENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-------EEEECCGGG-CCC-CSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCce-------EEEEecccc-ccc-cCCccEEE
Confidence            468999999999999999998875 99999999999999999987765421       144444333 222 46799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..++||+  +.+....+|+++.++|||||+|++..
T Consensus       190 ~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          190 STVVFMFL--NRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             ECSSGGGS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EccchhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999997  55677899999999999999987754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.45  E-value=6.5e-13  Score=123.68  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....+.....      .+..+..+.++...++||+|
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~------~~~~d~~~~~~~~~~~~D~i   98 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI------AVQQGAPRAFDDVPDNPDVI   98 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE------EEECCTTGGGGGCCSCCSEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE------EEecchHhhhhccCCCCCEE
Confidence            56799999999999999988763 468999999999999999988766543111      33333334454433579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      ++.+++++        ..+++++.++|||||++++..+.....
T Consensus        99 ~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~  133 (178)
T 3hm2_A           99 FIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVESE  133 (178)
T ss_dssp             EECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHH
T ss_pred             EECCcccH--------HHHHHHHHHhcCCCCEEEEEeeccccH
Confidence            99998876        478999999999999999998877443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.44  E-value=1.6e-12  Score=121.84  Aligned_cols=110  Identities=16%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++....+... +.     .+...+....++  .++||+|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~d~~~~~~--~~~~D~v  123 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDI-----RVVHSDLYENVK--DRKYNKI  123 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCE-----EEEECSTTTTCT--TSCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccce-----EEEECchhcccc--cCCceEE
Confidence            56899999999999999988874 699999999999999999887655432 11     144444444333  3579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~  412 (597)
                      ++..++|+.   ......+++++.++|+|||++++.+++...
T Consensus       124 ~~~~~~~~~---~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          124 ITNPPIRAG---KEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             EECCCSTTC---HHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             EECCCcccc---hhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            999888762   367889999999999999999999988744

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.43  E-value=4e-12  Score=131.77  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=105.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++....+...+..     +...++...++.   +||+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~p~---~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQ-----VVVGSFFDPLPA---GAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEE-----EEECCTTSCCCC---SCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeE-----EecCCCCCCCCC---CCcEE
Confidence            46899999999999999987653 358999999 999999999887665433321     333343334443   59999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++|+.  +.++...+|++++++|||||+|++..+....- .   ..                          ..+.
T Consensus       240 ~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~---~~--------------------------~~~d  287 (332)
T 3i53_A          240 VLSAVLHDW--DDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-H---AG--------------------------TGMD  287 (332)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHHTTTCEEEEEECCCC-------CC--------------------------HHHH
T ss_pred             EEehhhccC--CHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-C---cc--------------------------HHHH
Confidence            999999997  34457899999999999999999876533211 0   00                          0000


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      +.+  -........+.+++.++++++||+++.....
T Consensus       288 ~~~--~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  321 (332)
T 3i53_A          288 LRM--LTYFGGKERSLAELGELAAQAGLAVRAAHPI  321 (332)
T ss_dssp             HHH--HHHHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHH--HhhCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence            000  0000112357889999999999999987754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.43  E-value=5.2e-13  Score=126.95  Aligned_cols=110  Identities=17%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...+... .     .+...+..+... ...++||+|
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v-----~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSG-A-----TLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSC-E-----EEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCc-e-----EEEEccHHHHHhhccCCCccEE
Confidence            568999999999999998887777789999999999999999987765421 1     144444332211 113579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHH--hccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAE--CLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~r--lLKPGG~fIit~pn~  410 (597)
                      ++...+|+.   .++...+++.+.+  +|+|||+|++..+..
T Consensus       118 ~~~~p~~~~---~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          118 LADPPYNVD---SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             EECCCTTSC---HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             EECCCCCcc---hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            999887663   3678899999999  999999999988655

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.43  E-value=4.2e-13  Score=136.77  Aligned_cols=104  Identities=13%  Similarity=0.213  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCChhHHHHHh--cCCCEEEEEeCChHHHHHHHHHHHhh-hhhccccccccceeehhhhccCCCCC----
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN--GGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAELRSQYEDKA----  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~--~g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F~~dl~e~l~~~~----  364 (597)
                      ++.+|||||||+|..+..++.  .+..+|+|+|+|+.+++.|+++.... +.....     .+...++. .++...    
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v-----~~~~~d~~-~~~~~~~~~~  109 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNV-----SFKISSSD-DFKFLGADSV  109 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTE-----EEEECCTT-CCGGGCTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCce-----EEEEcCHH-hCCccccccc
Confidence            578999999999999999985  34579999999999999999987765 111111     13333322 222222    


Q ss_pred             --CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        365 --LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       365 --~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                        ++||+|+|..++||+     ++..+|+++.++|||||+|++.
T Consensus       110 ~~~~fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          110 DKQKIDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             TSSCEEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCeeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEEE
Confidence              679999999999996     5678999999999999999883

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.42  E-value=1.2e-12  Score=124.66  Aligned_cols=113  Identities=16%  Similarity=0.111  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..++..  +..+|+|+|+++.+++.|++++...+......     +...+.........++||+
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVT-----LIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEE-----EECSCGGGGGGTCCSCEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeE-----EEECCHHHHhhhccCCceE
Confidence            5789999999999999988775  33599999999999999999987765422221     3333322221122357999


Q ss_pred             EEEccch-----hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFCI-----HYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vL-----h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++...+     +.......+...+++++.++|||||+|++....
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            9998755     222234457778999999999999999998754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.41  E-value=2.1e-12  Score=125.91  Aligned_cols=110  Identities=15%  Similarity=0.054  Sum_probs=81.5

Q ss_pred             CCCEEEEECCC-CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh--hccCCCCCCcee
Q psy17742        292 SPIKVLDMGSG-KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL--RSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCG-tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl--~e~l~~~~~sFD  368 (597)
                      ++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|+++....+..  .     .+...+.  ...++  .++||
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--v-----~~~~~d~~~~~~~~--~~~fD  125 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN--V-----RLVKSNGGIIKGVV--EGTFD  125 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCC--C-----EEEECSSCSSTTTC--CSCEE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCC--c-----EEEeCCchhhhhcc--cCcee
Confidence            67899999999 999999988773359999999999999999998776551  1     1444442  22333  35799


Q ss_pred             EEEEccchhhhcc---------------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFE---------------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFe---------------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +|+++..+++.-.               .......+++.+.++|||||+|++.++..
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            9999876654310               11234789999999999999999987654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.41  E-value=7.8e-13  Score=134.48  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.......       .++...+.. ......++||+|+
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~-------~~~~~~~~~-~~~~~~~~fD~Vv  115 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVT-------IDLLDITAE-IPKELAGHFDFVL  115 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCE-------EEECCTTSC-CCGGGTTCCSEEE
T ss_pred             CcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccce-------eeeeecccc-cccccCCCccEEE
Confidence            678999999999999999998874 9999999999999999987543110       011111110 0011135799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..++||+  ..++...+++++.++| |||++++++...
T Consensus       116 ~~~~l~~~--~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          116 NDRLINRF--TTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             EhhhhHhC--CHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence            99999986  4567889999999999 999999998654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.40  E-value=1.2e-11  Score=128.98  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=82.1

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++....+...+..     +...++....+...+.||+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~D~v~  253 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVE-----FFEKNLLDARNFEGGAADVVM  253 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEE-----EEECCTTCGGGGTTCCEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceE-----EEeCCcccCcccCCCCccEEE
Confidence            6899999999999999988753 358999999 889999999887665443331     333333222100124599999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +..++|+.  +.++...+|++++++|||||+|++..+
T Consensus       254 ~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          254 LNDCLHYF--DAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EecccccC--CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99999997  445678999999999999999988653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.40  E-value=8.7e-13  Score=123.53  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+...+..     ++..+..+.++...++||+|+
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~fD~i~  105 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFT-----LLKMEAERAIDCLTGRFDLVF  105 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEE-----EECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceE-----EEECcHHHhHHhhcCCCCEEE
Confidence            568999999999999999888776799999999999999999987665432221     334443332222224699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCChhH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn~~~  412 (597)
                      +...++.     .....+++.+.  ++|+|||+|++.++....
T Consensus       106 ~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A          106 LDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             ECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             ECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence            9877643     34566777776  999999999999877643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.39  E-value=5.1e-13  Score=130.92  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=72.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++...      .     .+...+....++.. .++||+|
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~------~-----~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPH------A-----DVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCTT------S-----EEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCCC------c-----eEEEcchhhccCCcCCCCEEEE
Confidence            57899999999999999999887 4999999999999999988221      1     14444443445544 5689999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      ++..          ++..+|+++.++|||||+|+
T Consensus       116 ~~~~----------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSRR----------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEES----------CCSGGGGGHHHHEEEEEEEE
T ss_pred             EeCC----------CHHHHHHHHHHHcCCCcEEE
Confidence            9872          34578899999999999999

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.39  E-value=1.6e-12  Score=125.76  Aligned_cols=110  Identities=18%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehhhhccCCC-CCCc-ee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAELRSQYED-KALE-LD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~dl~e~l~~-~~~s-FD  368 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...+.. ...     .++..+..+.++. ..++ ||
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v-----~~~~~d~~~~~~~~~~~~~fD  127 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQA-----EVINQSSLDFLKQPQNQPHFD  127 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTE-----EEECSCHHHHTTSCCSSCCEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccce-----EEEECCHHHHHHhhccCCCCC
Confidence            36799999999999999877777679999999999999999998766541 111     1444443332222 2357 99


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHH--HHhccCCcEEEEEeCChh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNA--AECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i--~rlLKPGG~fIit~pn~~  411 (597)
                      +|++...++ .    .....+++.+  .++|||||+|++.+....
T Consensus       128 ~I~~~~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          128 VVFLDPPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEEECCCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             EEEECCCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            999987764 2    4667888888  678999999999887654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.38  E-value=7.8e-12  Score=128.90  Aligned_cols=158  Identities=15%  Similarity=0.073  Sum_probs=105.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..++... ..+++|+|++ .+++.|+++....+...+..     +...++... +.+ ..||+|
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~-~~~-~~~D~v  236 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYH-----TIAGSAFEV-DYG-NDYDLV  236 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEE-----EEESCTTTS-CCC-SCEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceE-----EEecccccC-CCC-CCCcEE
Confidence            56899999999999999988762 3599999999 99999999887655433221     333333321 222 249999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++|+.  +.++...+|++++++|+|||++++..+......                          ..+.++..+.
T Consensus       237 ~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~--------------------------~~~~~~~~~~  288 (335)
T 2r3s_A          237 LLPNFLHHF--DVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR--------------------------ITPPDAAAFS  288 (335)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTS--------------------------SCSHHHHHHH
T ss_pred             EEcchhccC--CHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCc--------------------------CCchHHHHHH
Confidence            999999996  456778999999999999999988765431100                          0000000000


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                      +.+... ......++.+++.++++++||+++....+
T Consensus       289 ~~~~~~-~~~~~~~t~~~~~~ll~~aGf~~~~~~~~  323 (335)
T 2r3s_A          289 LVMLAT-TPNGDAYTFAEYESMFSNAGFSHSQLHSL  323 (335)
T ss_dssp             HHHHHH-SSSCCCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHee-CCCCCcCCHHHHHHHHHHCCCCeeeEEEC
Confidence            000000 00112357899999999999999987754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.38  E-value=2.2e-12  Score=129.20  Aligned_cols=107  Identities=16%  Similarity=0.193  Sum_probs=78.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+++.+|||||||+|.++..+++. | ..+|+|+|+++.|++.++++..........      .+........+...+++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V------~~d~~~p~~~~~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPI------LGDARFPEKYRHLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEE------ESCTTCGGGGTTTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEE------EEeccCccccccccceE
Confidence            458999999999999999998864 2 358999999999999999887654322111      22222222333444679


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |+|++...  +.    .+...++.++.+.|||||++++.+.
T Consensus       149 DvVf~d~~--~~----~~~~~~l~~~~r~LKpGG~lvI~ik  183 (233)
T 4df3_A          149 DGLYADVA--QP----EQAAIVVRNARFFLRDGGYMLMAIK  183 (233)
T ss_dssp             EEEEECCC--CT----THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEecc--CC----hhHHHHHHHHHHhccCCCEEEEEEe
Confidence            99987533  32    5678899999999999999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.38  E-value=4.9e-12  Score=122.70  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD  368 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++....+..+..      ++..+... ++  ...++||
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~------~~~~d~~~-~~~~~~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIK------LLWVDGSD-LTDYFEDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEE------EEECCSSC-GGGTSCTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEE------EEeCCHHH-HHhhcCCCCCC
Confidence            46799999999999999988764 359999999999999999988766542211      33443322 22  2235799


Q ss_pred             EEEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        369 LVSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       369 vVi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +|++.+..++. ....     ....+++.+.++|||||+|++.+.+..
T Consensus       114 ~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  160 (214)
T 1yzh_A          114 RLYLNFSDPWP-KKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  160 (214)
T ss_dssp             EEEEESCCCCC-SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             EEEEECCCCcc-ccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            99998775432 1000     135799999999999999999887654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.38  E-value=6.9e-12  Score=120.38  Aligned_cols=108  Identities=11%  Similarity=0.055  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+|+.+++.|+++....+....      .+...+..+.++.. ++||+|
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v------~~~~~d~~~~~~~~-~~~D~i  112 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNV------TLVEAFAPEGLDDL-PDPDRV  112 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTE------EEEECCTTTTCTTS-CCCSEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE------EEEeCChhhhhhcC-CCCCEE
Confidence            57899999999999999988775 46999999999999999998876654221      13444433333322 469999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      ++..+++       +...+++++.++|||||+|++..+.....
T Consensus       113 ~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  148 (204)
T 3e05_A          113 FIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLDTL  148 (204)
T ss_dssp             EESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHHHH
T ss_pred             EECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccccH
Confidence            9988774       45689999999999999999998876433

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.37  E-value=6.8e-12  Score=131.64  Aligned_cols=106  Identities=19%  Similarity=0.269  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+++++|+ +.+++.|+++....+...+..     +...++.+.++.   .||+|
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~---~~D~v  252 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVT-----VAEGDFFKPLPV---TADVV  252 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEE-----EEECCTTSCCSC---CEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceE-----EEeCCCCCcCCC---CCCEE
Confidence            56899999999999999988764 358999999 999999999887655432221     344444444442   39999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..++|+.  .......+|++++++|||||+|++..+
T Consensus       253 ~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          253 LLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEeccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999986  334556999999999999999998766

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.37  E-value=3.2e-12  Score=128.35  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++....+..  .     .+...++...++.  ++||+|+
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v-----~~~~~d~~~~~~~--~~fD~Vv  189 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--P-----RFLEGSLEAALPF--GPFDLLV  189 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--C-----EEEESCHHHHGGG--CCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--E-----EEEECChhhcCcC--CCCCEEE
Confidence            568999999999999999988886 9999999999999999988765543  1     1344444333433  4699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++...|+       ...++.++.++|||||+|+++.
T Consensus       190 ~n~~~~~-------~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          190 ANLYAEL-------HAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             EECCHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCcHHH-------HHHHHHHHHHHcCCCCEEEEEe
Confidence            9866543       4689999999999999999864

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.36  E-value=5.5e-12  Score=126.35  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhhcccCCCCC-CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccc
Q psy17742        272 TKSMLIDEFLTRCKSSQPLG-SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN  350 (597)
Q Consensus       272 vKs~LI~~~l~~l~~~~~~~-~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d  350 (597)
                      +.+.++..+..       .. ++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++...+...+..     
T Consensus        35 ~d~~ll~~~~~-------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~-----  102 (259)
T 3lpm_A           35 IDAVLLAKFSY-------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIE-----  102 (259)
T ss_dssp             HHHHHHHHHCC-------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEE-----
T ss_pred             HHHHHHHHHhc-------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEE-----
Confidence            44556666553       22 468999999999999999998875699999999999999999988766543221     


Q ss_pred             eeehhhhccCC-CCCCceeEEEEccchhhh----------------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--h
Q psy17742        351 VFSAELRSQYE-DKALELDLVSCQFCIHYS----------------FESVQQARCMLKNAAECLKPGGFFVGTVPDS--N  411 (597)
Q Consensus       351 ~F~~dl~e~l~-~~~~sFDvVi~~~vLh~l----------------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~  411 (597)
                      ++..++.+... ...++||+|+++..++..                ++.......+++.+.++|||||+|++..+..  .
T Consensus       103 ~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  182 (259)
T 3lpm_A          103 IIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLL  182 (259)
T ss_dssp             EECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHH
T ss_pred             EEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHH
Confidence            34444332221 223679999997543221                0112456789999999999999999977544  3


Q ss_pred             HHHHHHh
Q psy17742        412 QIMARYR  418 (597)
Q Consensus       412 ~i~~~l~  418 (597)
                      .+...+.
T Consensus       183 ~~~~~l~  189 (259)
T 3lpm_A          183 DIIDIMR  189 (259)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444443

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.36  E-value=6.7e-12  Score=132.57  Aligned_cols=150  Identities=11%  Similarity=0.092  Sum_probs=104.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++...+...+..     +...++...++.   .||+|
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~-----~~~~d~~~~~p~---~~D~v  272 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCE-----ILPGDFFETIPD---GADVY  272 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEE-----EEECCTTTCCCS---SCSEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceE-----EeccCCCCCCCC---CceEE
Confidence            56899999999999999988763 348999999 999999999887665433321     333343334443   59999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH---HHHHHhhhccCccCCceEEEEecCCCCCCCCCccc
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ---IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA  447 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~---i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~  447 (597)
                      ++..++|+.  +.+....+|++++++|||||+|++..+....   ....+..                            
T Consensus       273 ~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d----------------------------  322 (369)
T 3gwz_A          273 LIKHVLHDW--DDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVD----------------------------  322 (369)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHH----------------------------
T ss_pred             EhhhhhccC--CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhh----------------------------
Confidence            999999997  4455668999999999999999986432210   0000000                            


Q ss_pred             ceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        448 KYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       448 ~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                         +.+  -........+.+++.++++++||+++...+
T Consensus       323 ---~~~--~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          323 ---LLL--LVLVGGAERSESEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             ---HHH--HHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             ---HHH--HhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence               000  000011235789999999999999998765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.36  E-value=1.9e-12  Score=127.46  Aligned_cols=116  Identities=13%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD  368 (597)
                      ++.+|||||||+|..+..++... ...|+|+|+|+.|++.|+++....+..+..      ++..|....++  ...++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~------~~~~Da~~~l~~~~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLR------VMCHDAVEVLHKMIPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEE------EECSCHHHHHHHHSCTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEE------EEECCHHHHHHHHcCCCChh
Confidence            46789999999999999988764 358999999999999999998766544321      44444333211  2236799


Q ss_pred             EEEEccchhhhccCHHHH------HHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        369 LVSCQFCIHYSFESVQQA------RCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~------~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      .|++.+...+. . ....      ..+++.+.++|||||+|++.+.+......
T Consensus       108 ~v~~~~~~p~~-~-~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~  158 (218)
T 3dxy_A          108 MVQLFFPDPWH-K-ARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEH  158 (218)
T ss_dssp             EEEEESCCCCC-S-GGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred             eEEEeCCCCcc-c-hhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHH
Confidence            99998765442 1 1111      25999999999999999999988765443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=5.5e-13  Score=131.36  Aligned_cols=106  Identities=10%  Similarity=0.004  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-----cCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-----QYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-----~l~~~~~s  366 (597)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++......         +...++..     .+.. ...
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~---------~~~~d~~~~~~~~~~~~-~~~  124 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANIS---------YRLLDGLVPEQAAQIHS-EIG  124 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEE---------EEECCTTCHHHHHHHHH-HHC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCce---------EEECccccccccccccc-ccC
Confidence            568899999999999999998875 8999999999999999987322111         33333211     1111 123


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ||+|++..++||+  +..+...+|+++.++|||||+|++..+..
T Consensus       125 ~d~v~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          125 DANIYMRTGFHHI--PVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             SCEEEEESSSTTS--CGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             ccEEEEcchhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9999999999998  33478899999999999999988776654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.36  E-value=1.3e-11  Score=115.27  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=85.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+.....     .+...+....++.. ++||+|+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-----~~~~~d~~~~~~~~-~~~D~v~  105 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNV-----TLMEGDAPEALCKI-PDIDIAV  105 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTE-----EEEESCHHHHHTTS-CCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcce-----EEEecCHHHhcccC-CCCCEEE
Confidence            57899999999999999998887 79999999999999999988766541111     13444443333331 3699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +..+++++       ..+++++.++|+|||++++..++......
T Consensus       106 ~~~~~~~~-------~~~l~~~~~~l~~gG~l~~~~~~~~~~~~  142 (192)
T 1l3i_A          106 VGGSGGEL-------QEILRIIKDKLKPGGRIIVTAILLETKFE  142 (192)
T ss_dssp             ESCCTTCH-------HHHHHHHHHTEEEEEEEEEEECBHHHHHH
T ss_pred             ECCchHHH-------HHHHHHHHHhcCCCcEEEEEecCcchHHH
Confidence            98877543       67899999999999999999988754443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.35  E-value=4.1e-12  Score=131.42  Aligned_cols=104  Identities=15%  Similarity=0.113  Sum_probs=81.3

Q ss_pred             CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      .+|||||||+|..+..++... ..+++++|+ +.+++.|+++....+...+..     +...++.+.++   ++||+|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~---~~~D~v~~  239 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVS-----LVGGDMLQEVP---SNGDIYLL  239 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEE-----EEESCTTTCCC---SSCSEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEE-----EecCCCCCCCC---CCCCEEEE
Confidence            899999999999999988753 358999999 999999999876655432221     33444433333   46999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ..++|+.  +.+....+|++++++|||||+|++..+
T Consensus       240 ~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          240 SRIIGDL--DEAASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             ESCGGGC--CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             chhccCC--CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9999986  445667999999999999999998754

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.35  E-value=2.4e-12  Score=120.71  Aligned_cols=110  Identities=17%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC---CCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY---EDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l---~~~~~sFD  368 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+...+..     ++..+..+.+   +...++||
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFE-----VRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEE-----EEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceE-----EEECcHHHHHHHHHhcCCCCC
Confidence            467999999999999998887776799999999999999999887665422221     3444432221   11135799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHH--HHhccCCcEEEEEeCChh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNA--AECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i--~rlLKPGG~fIit~pn~~  411 (597)
                      +|++...++.     .....+++.+  .++|+|||++++.++...
T Consensus       119 ~i~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          119 LVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             EEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EEEECCCCCc-----hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            9999877553     2334556666  889999999999987764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.35  E-value=7.3e-12  Score=129.49  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             CCCCEEEEECCCCChhHHH-HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGKGGDMLK-WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~-la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++.+|||||||+|.++.. +++....+|+|+|+|+.|++.|+++....+. .+..     +...+.. .++  .++||+
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~-----~v~gDa~-~l~--d~~FDv  191 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVN-----VITGDET-VID--GLEFDV  191 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEE-----EEESCGG-GGG--GCCCSE
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeE-----EEECchh-hCC--CCCcCE
Confidence            4789999999999976644 4543336999999999999999999887665 2221     3333332 244  357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++...   +    ++...+++++.++|||||+|++...+.
T Consensus       192 V~~~a~---~----~d~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          192 LMVAAL---A----EPKRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             EEECTT---C----SCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             EEECCC---c----cCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence            998654   2    567899999999999999999987544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.34  E-value=9.8e-12  Score=131.01  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFDv  369 (597)
                      ...+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++....+...+..     +...+....- +.+ ++||+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~p-~~~D~  251 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIH-----GHGANLLDRDVPFP-TGFDA  251 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEE-----EEECCCCSSSCCCC-CCCSE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceE-----EEEccccccCCCCC-CCcCE
Confidence            46899999999999999988743 348999999 999999999887655433321     3333332221 222 46999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++..++|+.  +.++...+|++++++|||||+|++..+
T Consensus       252 v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          252 VWMSQFLDCF--SEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             EEEESCSTTS--CHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEechhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            9999999986  456778999999999999999988653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.34  E-value=1.1e-11  Score=120.41  Aligned_cols=108  Identities=14%  Similarity=0.125  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|++++...+.....     .+...+..+.++.. ..||+|+
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v-----~~~~~d~~~~~~~~-~~~D~v~  127 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRM-----RAVQGTAPAALADL-PLPEAVF  127 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTE-----EEEESCTTGGGTTS-CCCSEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCE-----EEEeCchhhhcccC-CCCCEEE
Confidence            57899999999999999998885 59999999999999999998776554121     14444443333322 3699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +..++        +.. +++++.++|||||+|++..+..+.+..
T Consensus       128 ~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~  162 (204)
T 3njr_A          128 IGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESETL  162 (204)
T ss_dssp             ECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHH
T ss_pred             ECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccHHH
Confidence            87644        234 999999999999999999988765543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.33  E-value=2.4e-11  Score=127.01  Aligned_cols=151  Identities=17%  Similarity=0.167  Sum_probs=105.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ ..+++++|+ +.+++.|++++...+...+..     +...++.+.++.   .||+|
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~---~~D~v  253 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVD-----VVEGDFFEPLPR---KADAI  253 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEE-----EEECCTTSCCSS---CEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceE-----EEeCCCCCCCCC---CccEE
Confidence            56899999999999999988764 348999999 999999999887655432221     344444444442   39999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC--hhH---HHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD--SNQ---IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF  445 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn--~~~---i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f  445 (597)
                      ++..++|+.  ..++...+|++++++|||||+|++..+.  ++.   ....+..                          
T Consensus       254 ~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~--------------------------  305 (360)
T 1tw3_A          254 ILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELD--------------------------  305 (360)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHH--------------------------
T ss_pred             EEcccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhcc--------------------------
Confidence            999999986  3445578999999999999999987655  211   0000000                          


Q ss_pred             ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742        446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF  486 (597)
Q Consensus       446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F  486 (597)
                           +.+.  ........+.+++.++++++||+++.....
T Consensus       306 -----~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  339 (360)
T 1tw3_A          306 -----LRML--VFLGGALRTREKWDGLAASAGLVVEEVRQL  339 (360)
T ss_dssp             -----HHHH--HHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -----HHHh--hhcCCcCCCHHHHHHHHHHCCCeEEEEEeC
Confidence                 0000  000012357899999999999999987654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.33  E-value=3.3e-12  Score=123.56  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++....+... .     .+...+....++...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~-v-----~~~~~D~~~~~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-A-----RVVNSNAMSFLAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-E-----EEECSCHHHHHSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCc-E-----EEEECCHHHHHhhcCCCCCEEE
Confidence            357999999999999998777776799999999999999999987765421 1     1444443333333345799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHH--hccCCcEEEEEeCChh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAE--CLKPGGFFVGTVPDSN  411 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~r--lLKPGG~fIit~pn~~  411 (597)
                      +...+|.     .....+++.+.+  +|+|||+|++.+....
T Consensus       128 ~~~p~~~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          128 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             ECCCCCC-----CcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            9877542     345567777765  5999999999886553

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.33  E-value=7.5e-12  Score=120.32  Aligned_cols=100  Identities=15%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..+++.+ .+|+|+|+|+.+++.|++++...+.....      +...+....+.. .++||+|+
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~------~~~~d~~~~~~~-~~~~D~i~  148 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVS------TRHGDGWQGWQA-RAPFDAII  148 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEESCGGGCCGG-GCCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceE------EEECCcccCCcc-CCCccEEE
Confidence            67899999999999999988875 59999999999999999998765543211      444444333322 35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +..++|++.          .++.++|||||+|++.+++
T Consensus       149 ~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPEIP----------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred             Eccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence            999999872          1578999999999999887

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.32  E-value=5.9e-12  Score=133.82  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.|..+|+|+|+| .|++.|+++....+...+..     ++..++. .++.+ ++||+|+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~~-~~~D~Iv  134 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVE-----VIEGSVE-DISLP-EKVDVII  134 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEE-----EEESCGG-GCCCS-SCEEEEE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEE-----EEECchh-hcCcC-CcceEEE
Confidence            678999999999999999999887799999999 99999999988766543321     3444432 33333 5799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +..+.|++ ..+..+..+++.+.++|||||+|++.
T Consensus       135 ~~~~~~~l-~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          135 SEWMGYFL-LRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             ECCCBTTB-TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EcChhhcc-cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            97655544 44566888999999999999999764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.32  E-value=8.5e-11  Score=123.16  Aligned_cols=105  Identities=15%  Similarity=0.132  Sum_probs=80.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..+++.. ..+++|+|+ +.+++.|++++...+...+..     +...+.... +.+.  +|+|
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~-~~~~--~D~v  260 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMR-----GIAVDIYKE-SYPE--ADAV  260 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEE-----EEECCTTTS-CCCC--CSEE
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEE-----EEeCccccC-CCCC--CCEE
Confidence            56899999999999999988763 348999999 999999999887655433221     333333322 3322  5999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..++|+.  ..++...+|++++++|||||+|++..
T Consensus       261 ~~~~vlh~~--~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          261 LFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEechhccC--CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999999997  33458899999999999999997765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.31  E-value=4.1e-12  Score=133.66  Aligned_cols=106  Identities=16%  Similarity=0.160  Sum_probs=81.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|+++....+...+..     ++..++. .++.+.++||+|+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVT-----IIKGKVE-EVELPVEKVDIII  138 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEE-----EEESCTT-TCCCSSSCEEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEE-----EEECcHH-HccCCCCceEEEE
Confidence            5789999999999999999988877999999995 9999999988766543221     4444432 2333346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +..+.+++ .....+..+++.+.++|||||+|+.
T Consensus       139 s~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          139 SEWMGYCL-FYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             Eccccccc-cCchhHHHHHHHHHHhCCCCCEEcc
Confidence            97654443 3346788999999999999999874

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.30  E-value=1.9e-12  Score=125.89  Aligned_cols=102  Identities=17%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.|++.+++++...+.....      .+ .++....+  .++||+|
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v------~~-~d~~~~~~--~~~~DvV  119 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKY------RF-LNKESDVY--KGTYDVV  119 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEE------EE-ECCHHHHT--TSEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccE------EE-ecccccCC--CCCcChh
Confidence            57899999999999999987652 249999999999999999998876655322      23 33333332  3679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++..++|++    ++.+..+..+.+.|+|||+||-.
T Consensus       120 La~k~LHlL----~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          120 FLLKMLPVL----KQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEETCHHHH----HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             hHhhHHHhh----hhhHHHHHHHHHHhCCCCEEEEe
Confidence            999999999    77778888999999999988653

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.30  E-value=9.3e-12  Score=124.01  Aligned_cols=118  Identities=13%  Similarity=0.043  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhh------hhccccccccceeehhhhccCC--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELK------RKEEARPYRRNVFSAELRSQYE--D  362 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~------~~~~~~~~~~d~F~~dl~e~l~--~  362 (597)
                      ++.+|||||||+|.++..++... ...|+|+|+|+.|++.|++++....      ..+ .     .++..+....++  .
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v-----~~~~~d~~~~l~~~~  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-I-----ACLRSNAMKHLPNFF  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-E-----EEEECCTTTCHHHHC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-E-----EEEECcHHHhhhhhC
Confidence            46789999999999999988763 3589999999999999998765421      111 1     134444332222  2


Q ss_pred             CCCceeEEEEccchhhhcc-CHHH---HHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        363 KALELDLVSCQFCIHYSFE-SVQQ---ARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~lFe-s~~d---~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      ..++||.|++.+.-.+.-. +...   ...+|+++.++|||||.|++.+.+......
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~  176 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDW  176 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence            3467999998765443200 0000   147999999999999999999988754443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.30  E-value=8.8e-12  Score=121.70  Aligned_cols=114  Identities=12%  Similarity=0.140  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sF  367 (597)
                      ++.+|||||||+|.++..++... ...|+|+|+|+.+++.|+++....+..+..      ++..+...   .++  .++|
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~------~~~~d~~~l~~~~~--~~~~  109 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVK------LLNIDADTLTDVFE--PGEV  109 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEE------EECCCGGGHHHHCC--TTSC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEE------EEeCCHHHHHhhcC--cCCc
Confidence            46789999999999999988763 358999999999999999988765543211      33333222   133  3569


Q ss_pred             eEEEEccchhhhcc-CH-H--HHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        368 DLVSCQFCIHYSFE-SV-Q--QARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       368 DvVi~~~vLh~lFe-s~-~--d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      |.|++.+...+.-. +. .  ....+|+++.++|||||.|++.+.+....
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~  159 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF  159 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            99998766433200 00 0  13579999999999999999999776443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.30  E-value=1e-11  Score=121.48  Aligned_cols=103  Identities=16%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~s  366 (597)
                      .++.+|||||||+|..+..++... ..+|+|+|+|+.|++.+.++......   .     ..+..+....   .+.. ++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~---v-----~~~~~d~~~~~~~~~~~-~~  126 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNN---I-----IPLLFDASKPWKYSGIV-EK  126 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSS---E-----EEECSCTTCGGGTTTTC-CC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCC---e-----EEEEcCCCCchhhcccc-cc
Confidence            367899999999999998887653 35899999999998777665543211   1     0222332221   1222 57


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ||+|++....      ..+...++++++++|||||+|++.+.
T Consensus       127 fD~V~~~~~~------~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          127 VDLIYQDIAQ------KNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             EEEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEEeccC------hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9999997321      14556679999999999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.30  E-value=1.7e-11  Score=119.53  Aligned_cols=108  Identities=12%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-----C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-----A  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-----~  364 (597)
                      ++.+|||||||+|..+..++..  ...+|+|+|+++.+++.|++++...+...+..     +...+..+.++..     .
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~l~~~~~~~~~  132 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVT-----ILNGASQDLIPQLKKKYDV  132 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEE-----EEESCHHHHGGGTTTTSCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceE-----EEECCHHHHHHHHHHhcCC
Confidence            4689999999999999998874  13599999999999999999988766543321     3344422222211     1


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++||+|++....++.    .....++..+ ++|||||+|++....
T Consensus       133 ~~fD~V~~d~~~~~~----~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          133 DTLDMVFLDHWKDRY----LPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             CCCSEEEECSCGGGH----HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             CceEEEEEcCCcccc----hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            579999998877665    5666788888 999999999986543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.29  E-value=1.8e-11  Score=128.45  Aligned_cols=105  Identities=15%  Similarity=0.152  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++....+...+..     ++..+.. .++.+.++||+|+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~-----~~~~d~~-~~~~~~~~~D~Iv  136 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTIT-----LIKGKIE-EVHLPVEKVDVII  136 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEE-----EEESCTT-TSCCSCSCEEEEE
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEE-----EEEeeHH-HhcCCCCcEEEEE
Confidence            5789999999999999999988767999999997 9999999887665422221     3333332 2333345799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      +..+.+. +.+...+..+|.++.++|||||+|+
T Consensus       137 s~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCchhh-ccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            9763222 2334678899999999999999997

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.29  E-value=2e-11  Score=120.35  Aligned_cols=104  Identities=14%  Similarity=0.200  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..++... ..+|+|+|+++.+++.|++++...+...+..     +...+..+.++ ...++||+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~fD~  145 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVR-----IIEGNALEQFENVNDKVYDM  145 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEE-----EEESCGGGCHHHHTTSCEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECCHHHHHHhhccCCccE
Confidence            46899999999999999998742 4699999999999999999988766532221     44444333333 22357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |++....       .....+++.+.++|||||+|++.-
T Consensus       146 V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          146 IFIDAAK-------AQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             EEEETTS-------SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             EEEcCcH-------HHHHHHHHHHHHhcCCCeEEEEee
Confidence            9976543       345679999999999999999843

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.28  E-value=1.4e-11  Score=131.41  Aligned_cols=111  Identities=21%  Similarity=0.233  Sum_probs=86.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+...       .++..+...... ..++||+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v-------~~~~~D~~~~~~-~~~~fD~Ii  303 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKA-------QALHSDVDEALT-EEARFDIIV  303 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCC-------EEEECSTTTTSC-TTCCEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCe-------EEEEcchhhccc-cCCCeEEEE
Confidence            467999999999999999998874 99999999999999999987765431       144444333322 235799999


Q ss_pred             Eccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        372 CQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       372 ~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      ++..+|+.- ........+++++.++|||||+|++.+....
T Consensus       304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            999988721 1236788999999999999999999876553

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.28  E-value=2.4e-11  Score=123.79  Aligned_cols=107  Identities=13%  Similarity=0.157  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeC-ChHHHHHHHHHH-----Hhhhhh----ccccccccceeehhh---hc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADI-ASVSIEDCKTRY-----EELKRK----EEARPYRRNVFSAEL---RS  358 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDi-S~~mIe~A~er~-----~~~~~~----~~~~~~~~d~F~~dl---~e  358 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+ |+.+++.|+++.     ...+..    ....     +...+.   ..
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~-----~~~~~~~~~~~  153 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK-----VVPYRWGDSPD  153 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE-----EEECCTTSCTH
T ss_pred             CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE-----EEEecCCCccH
Confidence            46799999999999999888887669999999 899999999987     332221    0110     111110   11


Q ss_pred             cCCC--CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhcc---C--CcEEEEEe
Q psy17742        359 QYED--KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLK---P--GGFFVGTV  407 (597)
Q Consensus       359 ~l~~--~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLK---P--GG~fIit~  407 (597)
                      .+..  ..++||+|++..++++.    .+...+++.+.++|+   |  ||.+++.+
T Consensus       154 ~~~~~~~~~~fD~Ii~~dvl~~~----~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          154 SLQRCTGLQRFQVVLLADLLSFH----QAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHHHHSCSSBSEEEEESCCSCG----GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             HHHhhccCCCCCEEEEeCcccCh----HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            1110  12579999999998876    778899999999999   9  99887754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.28  E-value=4.2e-12  Score=117.19  Aligned_cols=107  Identities=13%  Similarity=0.105  Sum_probs=77.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sFD  368 (597)
                      ++.+|||+|||+|.++..++..+. .|+|+|+|+.+++.|+++....+.  ..     .++..+..+.   ++...++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~-----~~~~~d~~~~~~~~~~~~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GA-----RVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CC-----EEECSCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ce-----EEEeccHHHHHHhhhccCCceE
Confidence            357899999999999999998875 599999999999999998876654  11     1344442221   111123699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCChhH
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn~~~  412 (597)
                      +|++...+| .  ...   .+++.+.  ++|||||++++.++....
T Consensus       113 ~i~~~~~~~-~--~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          113 VAFMAPPYA-M--DLA---ALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             EEEECCCTT-S--CTT---HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             EEEECCCCc-h--hHH---HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            999987765 2  222   3444444  999999999999887643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.28  E-value=2e-11  Score=140.10  Aligned_cols=116  Identities=14%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|.++..+++.+.  .+|+|+|+|+.|++.|++++...............+...++. .++...++||+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~-dLp~~d~sFDl  799 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL-EFDSRLHDVDI  799 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT-SCCTTSCSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH-hCCcccCCeeE
Confidence            578999999999999999988762  599999999999999999766432110000000113344432 34444568999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      |+|..++||+  .......+++++.++|||| ++++++|+.+
T Consensus       800 VV~~eVLeHL--~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          800 GTCLEVIEHM--EEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             EEEESCGGGS--CHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             EEEeCchhhC--ChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            9999999998  3345567999999999999 9999999874

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.28  E-value=9.2e-12  Score=121.47  Aligned_cols=99  Identities=18%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.+++.|+++....+ .  .     .+...+....++ ..++||+|+
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~--v-----~~~~~d~~~~~~-~~~~fD~v~  139 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-N--I-----KLILGDGTLGYE-EEKPYDRVV  139 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-S--E-----EEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-C--e-----EEEECCcccccc-cCCCccEEE
Confidence            57899999999999999998887 699999999999999999876554 1  1     134444333333 235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..++|++    .      .++.++|||||++++.+++.
T Consensus       140 ~~~~~~~~----~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          140 VWATAPTL----L------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             ESSBBSSC----C------HHHHHTEEEEEEEEEEECSS
T ss_pred             ECCcHHHH----H------HHHHHHcCCCcEEEEEEcCC
Confidence            99999887    2      36889999999999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.27  E-value=9e-12  Score=123.21  Aligned_cols=160  Identities=14%  Similarity=0.081  Sum_probs=91.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCC-hHHHHHH---HHHHHhhhhhccccccccceeehhhhccCCCC-CC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIA-SVSIEDC---KTRYEELKRKEEARPYRRNVFSAELRSQYEDK-AL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS-~~mIe~A---~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~  365 (597)
                      ++.+|||||||+|.++..++.. ....|+|+|+| +.|++.|   +++....+..+.      .+...+. ..++.. ..
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v------~~~~~d~-~~l~~~~~d   96 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNV------VFVIAAA-ESLPFELKN   96 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSE------EEECCBT-TBCCGGGTT
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCe------EEEEcCH-HHhhhhccC
Confidence            5789999999999999998843 23589999999 7777776   655544333221      1333332 233321 13


Q ss_pred             ceeEEEEccchhhhccC-HHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCC
Q psy17742        366 ELDLVSCQFCIHYSFES-VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPL  444 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes-~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~  444 (597)
                      .+|.|.+++.......+ ..+...+|++++++|||||+|++.+.-... ....               .+..   ...+.
T Consensus        97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~---------------~~~~---~~~~~  157 (225)
T 3p2e_A           97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEA---------------EIKK---RGLPL  157 (225)
T ss_dssp             CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------------------------
T ss_pred             eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhc---------------hhhh---cCCCC
Confidence            46666665543221000 012356899999999999999984432211 1000               0000   00010


Q ss_pred             cccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742        445 FGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYL  491 (597)
Q Consensus       445 fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~  491 (597)
                      +             .+.|+. .+++.++++++||+++....|..-|.
T Consensus       158 ~-------------~~~~~~-~~el~~~l~~aGf~v~~~~~~~~~~~  190 (225)
T 3p2e_A          158 L-------------SKAYFL-SEQYKAELSNSGFRIDDVKELDNEYV  190 (225)
T ss_dssp             C-------------CHHHHH-SHHHHHHHHHHTCEEEEEEEECHHHH
T ss_pred             C-------------Chhhcc-hHHHHHHHHHcCCCeeeeeecCHHHH
Confidence            0             111211 23589999999999999887775443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.27  E-value=5.2e-11  Score=110.58  Aligned_cols=105  Identities=15%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|+++....+....      .+...+....++.  ++||+|+
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~------~~~~~d~~~~~~~--~~~D~i~  105 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNC------QIIKGRAEDVLDK--LEFNKAF  105 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSE------EEEESCHHHHGGG--CCCSEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE------EEEECCccccccC--CCCcEEE
Confidence            568999999999999999988 446999999999999999999876654211      1444554444443  4699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +..+ +       +...+++++.++  |||.|++..++...+..
T Consensus       106 ~~~~-~-------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~  139 (183)
T 2yxd_A          106 IGGT-K-------NIEKIIEILDKK--KINHIVANTIVLENAAK  139 (183)
T ss_dssp             ECSC-S-------CHHHHHHHHHHT--TCCEEEEEESCHHHHHH
T ss_pred             ECCc-c-------cHHHHHHHHhhC--CCCEEEEEecccccHHH
Confidence            9877 2       346788888888  99999999988865544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.27  E-value=2.5e-11  Score=123.51  Aligned_cols=103  Identities=14%  Similarity=0.058  Sum_probs=79.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+......     ++..+..+...  .++||+|+
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~-----~~~~D~~~~~~--~~~fD~Vi  197 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMS-----AYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEE-----EECSCTTTCCC--CSCEEEEE
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEE-----EEECCHHHhcc--cCCccEEE
Confidence            578999999999999999998876579999999999999999987766543221     34444333333  35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +....        ....++..+.++|||||+|++....
T Consensus       198 ~~~p~--------~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          198 MGYVV--------RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             ECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCch--------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence            96442        2246889999999999999987654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=118.02  Aligned_cols=111  Identities=22%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+.    .+|+|+|+|+.            ...         +...++. .++...++||+|+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~~~---------~~~~d~~-~~~~~~~~fD~v~  120 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------DPR---------VTVCDMA-QVPLEDESVDVAV  120 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------STT---------EEESCTT-SCSCCTTCEEEEE
T ss_pred             CCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------Cce---------EEEeccc-cCCCCCCCEeEEE
Confidence            46789999999999988662    58999999987            110         3333322 2344446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +..++|+     .+...+|+++.++|+|||++++..+...                                        
T Consensus       121 ~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------------------  155 (215)
T 2zfu_A          121 FCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEVSSR----------------------------------------  155 (215)
T ss_dssp             EESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEECGGG----------------------------------------
T ss_pred             Eehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------------------
Confidence            9999974     4678999999999999999999754220                                        


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                                 ..+.+.+.++++++||+++...
T Consensus       156 -----------~~~~~~~~~~l~~~Gf~~~~~~  177 (215)
T 2zfu_A          156 -----------FEDVRTFLRAVTKLGFKIVSKD  177 (215)
T ss_dssp             -----------CSCHHHHHHHHHHTTEEEEEEE
T ss_pred             -----------CCCHHHHHHHHHHCCCEEEEEe
Confidence                       1256789999999999998744

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.26  E-value=2.3e-11  Score=117.31  Aligned_cols=102  Identities=19%  Similarity=0.091  Sum_probs=79.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..++..+.  .+|+|+|+++.+++.|++++...+.....      +...+....++. .++||+
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~------~~~~d~~~~~~~-~~~fD~  149 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVI------VIVGDGTLGYEP-LAPYDR  149 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEE------EEESCGGGCCGG-GCCEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeE------EEECCcccCCCC-CCCeeE
Confidence            578999999999999998887642  59999999999999999988765433211      333443333332 357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++..++|++    .      .++.++|||||++++.++..
T Consensus       150 v~~~~~~~~~----~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          150 IYTTAAGPKI----P------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEESSBBSSC----C------HHHHHTEEEEEEEEEEESSS
T ss_pred             EEECCchHHH----H------HHHHHHcCCCcEEEEEECCC
Confidence            9999999987    2      47899999999999998765

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.26  E-value=2.5e-11  Score=126.46  Aligned_cols=106  Identities=20%  Similarity=0.193  Sum_probs=79.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++....+...+..     ++..++. .++.+.++||+|+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~-----~~~~d~~-~~~~~~~~~D~Iv  110 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKIT-----LLRGKLE-DVHLPFPKVDIII  110 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEE-----EEESCTT-TSCCSSSCEEEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEE-----EEECchh-hccCCCCcccEEE
Confidence            568999999999999999998887799999999 59999999887765533221     3333332 2333335799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +....+++ .+...+..++..+.++|||||+++.
T Consensus       111 s~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          111 SEWMGYFL-LYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EeCchhhc-ccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            98654443 3446678899999999999999973

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.26  E-value=2.7e-11  Score=120.32  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=79.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhh---hhhcc----------------------
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING---GVKHVVFADIASVSIEDCKTRYEEL---KRKEE----------------------  343 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~---~~~~~----------------------  343 (597)
                      ++.+|||+|||+|.++..++..   ...+|+|+|+|+.+++.|+++....   +....                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4579999999999999988765   2358999999999999999876544   22110                      


Q ss_pred             ---cc-------cccc-ceeehhhhccCCC----CCCceeEEEEccchhhhcc-----CHHHHHHHHHHHHHhccCCcEE
Q psy17742        344 ---AR-------PYRR-NVFSAELRSQYED----KALELDLVSCQFCIHYSFE-----SVQQARCMLKNAAECLKPGGFF  403 (597)
Q Consensus       344 ---~~-------~~~~-d~F~~dl~e~l~~----~~~sFDvVi~~~vLh~lFe-----s~~d~~~~L~~i~rlLKPGG~f  403 (597)
                         ..       .... .+...++...++.    ...+||+|+|+..+++...     .......+++++.++|||||+|
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               00       0000 0233333333310    2236999999877665411     1367789999999999999999


Q ss_pred             EEEe
Q psy17742        404 VGTV  407 (597)
Q Consensus       404 Iit~  407 (597)
                      +++.
T Consensus       211 ~~~~  214 (250)
T 1o9g_A          211 AVTD  214 (250)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9943

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.25  E-value=3.6e-11  Score=122.38  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=78.9

Q ss_pred             CCEEEEECCCC---ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-----------
Q psy17742        293 PIKVLDMGSGK---GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-----------  357 (597)
Q Consensus       293 ~~rVLDLGCGt---G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-----------  357 (597)
                      ..+|||||||+   |..+..+... ...+|+|+|+|+.||+.|+++.....   +..     +...++.           
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~---~v~-----~~~~D~~~~~~~~~~~~~  149 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDP---NTA-----VFTADVRDPEYILNHPDV  149 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCT---TEE-----EEECCTTCHHHHHHSHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCC---CeE-----EEEeeCCCchhhhccchh
Confidence            47899999999   9877665543 23599999999999999999874321   111     2333321           


Q ss_pred             -ccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        358 -SQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       358 -e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                       ..++.  .+||+|++..+|||+ .. .+...+|++++++|+|||+|+++....
T Consensus       150 ~~~~d~--~~~d~v~~~~vlh~~-~d-~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          150 RRMIDF--SRPAAIMLVGMLHYL-SP-DVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHCCT--TSCCEEEETTTGGGS-CT-TTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hccCCC--CCCEEEEEechhhhC-Cc-HHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence             12333  369999999999998 22 258899999999999999999988665

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.25  E-value=1.5e-11  Score=119.03  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHh----hhhhccccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEE----LKRKEEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~----~~~~~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.|++.+.++...    .+... .     .+...+.. .++...+.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~-v-----~~~~~d~~-~l~~~~~~   99 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-L-----LYLWATAE-RLPPLSGV   99 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT-E-----EEEECCST-TCCSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc-e-----EEEecchh-hCCCCCCC
Confidence            57899999999999999988874 36999999999999975444332    11111 1     13333332 24444344


Q ss_pred             eeEEEEcc---chh--hhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        367 LDLVSCQF---CIH--YSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       367 FDvVi~~~---vLh--~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                       |.|.+.+   .++  |+    .+...+|+++.++|||||+|++++.
T Consensus       100 -d~v~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A          100 -GELHVLMPWGSLLRGVL----GSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             -EEEEEESCCHHHHHHHH----TSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CEEEEEccchhhhhhhh----ccHHHHHHHHHHHcCCCcEEEEEec
Confidence             6666433   232  43    4557899999999999999999653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.24  E-value=3.1e-11  Score=113.57  Aligned_cols=98  Identities=17%  Similarity=0.158  Sum_probs=72.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+  +|+|+|+|+.|++.      .    ...     .+...+....++.  ++||+|+
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~----~~~-----~~~~~d~~~~~~~--~~fD~i~   83 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H----RGG-----NLVRADLLCSINQ--ESVDVVV   83 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C----SSS-----CEEECSTTTTBCG--GGCSEEE
T ss_pred             CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c----cCC-----eEEECChhhhccc--CCCCEEE
Confidence            46799999999999999998877  99999999999987      1    111     1445554444443  5799999


Q ss_pred             EccchhhhccC-----HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFES-----VQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes-----~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++..+|+.-..     ..+...+++.+.+.| |||++++..+.
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             ECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence            99888764110     113356888888888 99999997643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.24  E-value=6.1e-12  Score=119.94  Aligned_cols=110  Identities=15%  Similarity=0.050  Sum_probs=63.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC---CCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED---KALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~---~~~sF  367 (597)
                      ++.+|||+|||+|..+..++..+ ..+|+|+|+|+.+++.|++++...+.  ..     .+...+....++.   ..++|
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~-----~~~~~d~~~~~~~~~~~~~~f  102 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VV-----DWAAADGIEWLIERAERGRPW  102 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHHHHHHHHHTTCCB
T ss_pred             CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ce-----EEEEcchHhhhhhhhhccCcc
Confidence            57899999999999999988874 34899999999999999998776544  11     1444444333332   12579


Q ss_pred             eEEEEccchhhh------ccC----------------HHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy17742        368 DLVSCQFCIHYS------FES----------------VQQARCMLKNAAECLKPGGF-FVGTVP  408 (597)
Q Consensus       368 DvVi~~~vLh~l------Fes----------------~~d~~~~L~~i~rlLKPGG~-fIit~p  408 (597)
                      |+|+++..++..      ...                ......+++++.++|||||+ +++.++
T Consensus       103 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          103 HAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             SEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             cEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            999997544332      000                01127899999999999999 666554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.23  E-value=2.4e-12  Score=126.58  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=79.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...+.....     .+...+.....+  .++||+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-----~~~~~d~~~~~~--~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKI-----EFICGDFLLLAS--FLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGE-----EEEESCHHHHGG--GCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCe-----EEEECChHHhcc--cCCCCEEE
Confidence            46899999999999999999887 69999999999999999998776642222     144444333222  35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +..++|+.    ......+.+++++|+|||++++
T Consensus       150 ~~~~~~~~----~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          150 LSPPWGGP----DYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             ECCCCSSG----GGGGSSSBCTTTSCSSCHHHHH
T ss_pred             ECCCcCCc----chhhhHHHHHHhhcCCcceeHH
Confidence            99999886    4455578889999999998655

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.23  E-value=2.8e-11  Score=117.59  Aligned_cols=106  Identities=14%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC---C--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED---K--A  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~---~--~  364 (597)
                      ++.+|||||||+|..+..++..  +..+|+|+|+++.+++.|++++...+...+..     +...+..+.++.   .  .
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIG-----LRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEESCHHHHHHHHHTTTCT
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceE-----EEeCCHHHHHHHhhhccCC
Confidence            4679999999999999999875  13699999999999999999987766543221     333332222211   1  1


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++||+|++....       .....+++.+.++|||||+|++....
T Consensus       139 ~~fD~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          139 WQYDLIYIDADK-------ANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             TCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             CCccEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            579999976542       45667999999999999999986543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.23  E-value=2.7e-11  Score=126.75  Aligned_cols=151  Identities=15%  Similarity=0.109  Sum_probs=94.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..+++.. ..+++++|++ .++.  +++....+...+..     +...++.+.++    +||+|
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~-----~~~~d~~~~~p----~~D~v  251 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWK-----VVEGDFLREVP----HADVH  251 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEE-----EEECCTTTCCC----CCSEE
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeE-----EEecCCCCCCC----CCcEE
Confidence            56899999999999999988753 3479999994 4444  22222222222111     33333333343    59999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      ++..++|+.  +.++...+|++++++|||||+|++..+.....                           ..+.+...+.
T Consensus       252 ~~~~vlh~~--~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~---------------------------~~~~~~~~~d  302 (348)
T 3lst_A          252 VLKRILHNW--GDEDSVRILTNCRRVMPAHGRVLVIDAVVPEG---------------------------NDAHQSKEMD  302 (348)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEEECCBCSS---------------------------SSCCHHHHHH
T ss_pred             EEehhccCC--CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCC---------------------------CCcchhhhcC
Confidence            999999997  34455799999999999999999865422100                           0000000000


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                      +.+  .........+.+++.++++++||+++....
T Consensus       303 ~~~--~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          303 FMM--LAARTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             HHH--HHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhh--hhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            000  000111235789999999999999998764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.23  E-value=5.8e-11  Score=118.50  Aligned_cols=106  Identities=10%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sF  367 (597)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++...+...+..     +...+..+.++  ...++|
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~-----~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVT-----LREGPALQSLESLGECPAF  137 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEE-----EEESCHHHHHHTCCSCCCC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHhcCCCCCe
Confidence            46899999999999999988762  3599999999999999999988766543221     33444322222  122479


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++....       .....+|+++.++|||||+|++....
T Consensus       138 D~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          138 DLIFIDADK-------PNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             SEEEECSCG-------GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             EEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            999986543       45567999999999999999987554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.22  E-value=6.2e-11  Score=117.76  Aligned_cols=114  Identities=17%  Similarity=0.121  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhh--------hhhccccccccceeehhhhccCC-
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEEL--------KRKEEARPYRRNVFSAELRSQYE-  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~--------~~~~~~~~~~~d~F~~dl~e~l~-  361 (597)
                      ++.+|||||||+|.++..++..+. ..|+|+|+|+.+++.|++++...        +..+.      .++..+....++ 
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv------~~~~~D~~~~l~~  122 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI------NVLRGNAMKFLPN  122 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE------EEEECCTTSCGGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE------EEEeccHHHHHHH
Confidence            567999999999999999888753 48999999999999999987654        22211      134444332232 


Q ss_pred             -CCCCceeEEEEccchhhhccCHHH-----HHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742        362 -DKALELDLVSCQFCIHYSFESVQQ-----ARCMLKNAAECLKPGGFFVGTVPDSNQ  412 (597)
Q Consensus       362 -~~~~sFDvVi~~~vLh~lFes~~d-----~~~~L~~i~rlLKPGG~fIit~pn~~~  412 (597)
                       ...+++|.|++.+.-.+. .....     ...+++++.++|+|||+|++.+.....
T Consensus       123 ~~~~~~~d~v~~~~p~p~~-k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~  178 (246)
T 2vdv_E          123 FFEKGQLSKMFFCFPDPHF-KQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDL  178 (246)
T ss_dssp             TSCTTCEEEEEEESCCCC-------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             hccccccCEEEEECCCccc-ccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHH
Confidence             234679999865432111 00000     047999999999999999998876643

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.21  E-value=2.9e-11  Score=119.58  Aligned_cols=100  Identities=17%  Similarity=0.179  Sum_probs=75.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC---CCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED---KALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~---~~~sF  367 (597)
                      ++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|+++....+.....      +...+..+ ++.   ..++|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~------~~~~d~~~-~~~~~~~~~~f  142 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTT------FCHDRAET-FGQRKDVRESY  142 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEE------EEESCHHH-HTTCTTTTTCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEE------EEeccHHH-hcccccccCCc
Confidence            4689999999999999888742 2358999999999999999988776543211      34444322 221   13579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|++..+        .+...+++.+.++|||||+|++.
T Consensus       143 D~V~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARAV--------ARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEECC--------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEecc--------CCHHHHHHHHHHhcCCCCEEEEE
Confidence            99999752        34678999999999999999885

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.21  E-value=3.6e-11  Score=126.32  Aligned_cols=106  Identities=15%  Similarity=0.167  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|+++....+...+..     +...+..+ ++.+ ++||+|+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~-----~~~~d~~~-~~~~-~~~D~Iv  121 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIV-----VIPGKVEE-VSLP-EQVDIII  121 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEE-----EEESCTTT-CCCS-SCEEEEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEE-----EEEcchhh-CCCC-CceeEEE
Confidence            5689999999999999999888777999999996 8999998877665432221     33333322 2222 4799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..+++|+.  .+....++.++.++|||||++++..
T Consensus       122 s~~~~~~~~--~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          122 SEPMGYMLF--NERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             ECCCBTTBT--TTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EeCchhcCC--hHHHHHHHHHHHhhcCCCeEEEEec
Confidence            998877652  2445678889999999999998654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.21  E-value=2.9e-11  Score=123.64  Aligned_cols=112  Identities=19%  Similarity=0.261  Sum_probs=75.0

Q ss_pred             CCCEEEEECCCCCh----hHHHHHhc-C----CCEEEEEeCChHHHHHHHHHHHhh-hh-------------------h-
Q psy17742        292 SPIKVLDMGSGKGG----DMLKWING-G----VKHVVFADIASVSIEDCKTRYEEL-KR-------------------K-  341 (597)
Q Consensus       292 ~~~rVLDLGCGtG~----~l~~la~~-g----~~~V~GIDiS~~mIe~A~er~~~~-~~-------------------~-  341 (597)
                      ++.+|||+|||+|.    ++..++.. +    ..+|+|+|+|+.||+.|++..-.. ..                   . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    44444443 2    138999999999999999863110 00                   0 


Q ss_pred             -ccccc---cccceeehhhhc-cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        342 -EEARP---YRRNVFSAELRS-QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       342 -~~~~~---~~~d~F~~dl~e-~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                       .....   ....+...++.. +++. .++||+|+|.++++|+  +.+...+++++++++|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~-~~~fDlI~crnvliyf--~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNV-PGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCC-CCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCc-CCCeeEEEECCchHhC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence             00000   000123334443 2331 3579999999999997  4556789999999999999999884

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.21  E-value=1e-10  Score=117.40  Aligned_cols=102  Identities=17%  Similarity=0.116  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD  368 (597)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+++....+..+..      ++..+..+...  ...++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~------~~~~d~~~~~~~~~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGAR------ALWGRAEVLAREAGHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEE------EEECCHHHHTTSTTTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceE------EEECcHHHhhcccccCCCce
Confidence            5689999999999999888765 3469999999999999999998877654321      44444322211  1135799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|++..+        .++..+++.+.++|||||+|++..
T Consensus       154 ~I~s~a~--------~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          154 RAVARAV--------APLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEEEESS--------CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEECCc--------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            9999743        234689999999999999998754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.20  E-value=2.3e-11  Score=127.33  Aligned_cols=109  Identities=19%  Similarity=0.278  Sum_probs=84.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++...+....       ++..+.... .  .++||+|
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-------~~~~d~~~~-~--~~~fD~I  265 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGE-------VFASNVFSE-V--KGRFDMI  265 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCE-------EEECSTTTT-C--CSCEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCE-------EEEcccccc-c--cCCeeEE
Confidence            356899999999999999887763 4899999999999999999876544321       333333222 2  3579999


Q ss_pred             EEccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +++.++|+.. .+......+++++.++|||||.|++.....
T Consensus       266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            9999988621 123677899999999999999999987665

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.20  E-value=5.5e-11  Score=117.08  Aligned_cols=102  Identities=18%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+..+|+|+|+++.+++.|+++....+.....      +...+....++.. .+||+|+
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~------~~~~d~~~~~~~~-~~fD~Ii  163 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVH------VILGDGSKGFPPK-APYDVII  163 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEE------EEESCGGGCCGGG-CCEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE------EEECCcccCCCCC-CCccEEE
Confidence            56799999999999999888764258999999999999999988765543211      3333333334332 3599999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +..+++++    .      .++.++|||||++++.+++.
T Consensus       164 ~~~~~~~~----~------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          164 VTAGAPKI----P------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             ECSBBSSC----C------HHHHHTEEEEEEEEEEECSS
T ss_pred             ECCcHHHH----H------HHHHHhcCCCcEEEEEEecC
Confidence            99999887    2      26789999999999999865

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.20  E-value=3.7e-11  Score=118.48  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             CCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehhhhccCCC-CCCcee
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAELRSQYED-KALELD  368 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~dl~e~l~~-~~~sFD  368 (597)
                      +.+|||||||+|..+..++.. + ..+|+++|+++.+++.|++++...+.. .+..     +...+..+.++. ..++||
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~-----~~~gda~~~l~~~~~~~fD  131 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVR-----FLLSRPLDVMSRLANDSYQ  131 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEE-----EECSCHHHHGGGSCTTCEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEE-----EEEcCHHHHHHHhcCCCcC
Confidence            459999999999999988874 1 369999999999999999998876654 2221     333332222221 135799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|++....       .+...+++.+.++|||||+|++.
T Consensus       132 ~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          132 LVFGQVSP-------MDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEEECCCT-------TTHHHHHHHHHHHEEEEEEEEET
T ss_pred             eEEEcCcH-------HHHHHHHHHHHHHcCCCcEEEEe
Confidence            99987544       34457899999999999999984

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.19  E-value=6.3e-11  Score=117.42  Aligned_cols=108  Identities=26%  Similarity=0.295  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..++.. + ..+|+|+|+++.+++.|++++...+...+..     +...+..+.++.  ++||+
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~--~~~D~  165 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVT-----IKLKDIYEGIEE--ENVDH  165 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEE-----EECSCGGGCCCC--CSEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceE-----EEECchhhccCC--CCcCE
Confidence            6789999999999999998876 3 4699999999999999999987766543221     444454444443  56999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      |++..         .+...+++++.++|+|||++++..+..+.+..
T Consensus       166 v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  202 (255)
T 3mb5_A          166 VILDL---------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMR  202 (255)
T ss_dssp             EEECS---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred             EEECC---------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            99842         33457899999999999999999988755443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.19  E-value=1.2e-10  Score=113.12  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCC-CC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDK-AL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~-~~  365 (597)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++...+...+..     +...+..+.   ++.. .+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVE-----VRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEESCHHHHHHHHHHTTCC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHHHHhcCCC
Confidence            46899999999999999998762  2599999999999999999987766543221     333332222   2111 14


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +||+|++....       .....+++.+.++|||||+|++..+.
T Consensus       133 ~fD~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          133 PFDFIFIDADK-------QNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             CCSEEEECSCG-------GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             CcCEEEEcCCc-------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            69999987653       34568999999999999999986543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.19  E-value=8.7e-11  Score=125.07  Aligned_cols=115  Identities=20%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++...+......   ..++..+....++.  ++||+|
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~---v~~~~~D~~~~~~~--~~fD~I  296 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDR---CEFMINNALSGVEP--FRFNAV  296 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGG---EEEEECSTTTTCCT--TCEEEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCce---EEEEechhhccCCC--CCeeEE
Confidence            45899999999999999998874 4699999999999999999988765432110   01344454444443  579999


Q ss_pred             EEccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        371 SCQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       371 i~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +|+..+|+.. ........+++++.++|||||+|++......
T Consensus       297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            9999888631 0112345799999999999999999876553

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.19  E-value=7.2e-11  Score=113.95  Aligned_cols=103  Identities=13%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..++...  ..+|+|+|+|+.+++.|++++...+...+..     +...+..+.++...+ ||+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~-fD~  129 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVE-----LQVGDPLGIAAGQRD-IDI  129 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEE-----EEESCHHHHHTTCCS-EEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEE-----EEEecHHHHhccCCC-CCE
Confidence            45799999999999999988752  3599999999999999999887665433221     344443333333235 999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |++....       .+...+++++.++|||||+|++..
T Consensus       130 v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          130 LFMDCDV-------FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             EEEETTT-------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             EEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence            9987432       345689999999999999999853

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.18  E-value=4.7e-11  Score=120.23  Aligned_cols=114  Identities=11%  Similarity=0.045  Sum_probs=80.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHh---hhhhccccccccceeehhhhccC------C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEE---LKRKEEARPYRRNVFSAELRSQY------E  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~---~~~~~~~~~~~~d~F~~dl~e~l------~  361 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+++.+++.|+++...   .+...+..     ++..|+....      .
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~-----~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE-----VLEADVTLRAKARVEAG  110 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEE-----EEECCTTCCHHHHHHTT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEE-----EEeCCHHHHhhhhhhhc
Confidence            46799999999999999888764 35899999999999999998776   44432221     3444433221      1


Q ss_pred             CCCCceeEEEEccchhhh--------------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        362 DKALELDLVSCQFCIHYS--------------FESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~l--------------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ...++||+|+++..++..              +........+++.+.++|||||+|++..+..
T Consensus       111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence            123579999998443221              0111236789999999999999999987765

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.18  E-value=2.1e-11  Score=121.11  Aligned_cols=110  Identities=10%  Similarity=0.069  Sum_probs=70.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc----cCCCC-CC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS----QYEDK-AL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e----~l~~~-~~  365 (597)
                      ++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++....+...+..     +...+...    .++.. .+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~~~~  139 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIK-----VVKVPQKTLLMDALKEESEI  139 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECCTTCSSTTTSTTCCSC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEE-----EEEcchhhhhhhhhhcccCC
Confidence            46799999999999988877642 3599999999999999999987765433221     33333222    23321 14


Q ss_pred             ceeEEEEccchhhhccC-----------HHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        366 ELDLVSCQFCIHYSFES-----------VQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes-----------~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +||+|+++..+++.-..           ......++..++++|||||.+.+.
T Consensus       140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            79999998665543100           011235678999999999988654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.18  E-value=5.2e-11  Score=118.97  Aligned_cols=101  Identities=21%  Similarity=0.372  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++....           .+...+. ..++...++||+|
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~d~-~~~~~~~~~fD~v  152 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQV-----------TFCVASS-HRLPFSDTSMDAI  152 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTS-----------EEEECCT-TSCSBCTTCEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCc-----------EEEEcch-hhCCCCCCceeEE
Confidence            57899999999999999988762 359999999999999998875221           0233332 2344444679999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      ++.++.           .+++++.++|||||+|++.+++...+..
T Consensus       153 ~~~~~~-----------~~l~~~~~~L~pgG~l~~~~~~~~~~~~  186 (269)
T 1p91_A          153 IRIYAP-----------CKAEELARVVKPGGWVITATPGPRHLME  186 (269)
T ss_dssp             EEESCC-----------CCHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             EEeCCh-----------hhHHHHHHhcCCCcEEEEEEcCHHHHHH
Confidence            987653           2478999999999999999998865443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.17  E-value=1e-10  Score=114.78  Aligned_cols=103  Identities=19%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~sF  367 (597)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+|+.|++.+.++......   .     .+...+....  ++...++|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~---v-----~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTN---I-----IPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTT---E-----EEECSCTTCGGGGGGGCCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCC---e-----EEEEcccCChhhhcccCCcE
Confidence            5789999999999999998875  235899999999998888777655311   1     1333333221  22234579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |+|++...      .......++.++.++|||||+|++.+.
T Consensus       149 D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          149 DVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            99999654      124556789999999999999999754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.17  E-value=3.1e-11  Score=124.56  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.||+.+.++...........  + ..+.   .+.++.  .+||+|+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~n--i-~~l~---~~~l~~--~~fD~v~  156 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYN--F-RYAE---PVDFTE--GLPSFAS  156 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCC--G-GGCC---GGGCTT--CCCSEEE
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccC--c-eecc---hhhCCC--CCCCEEE
Confidence            467999999999999999988887799999999999998654211110000000  0 0111   122333  3499999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |..++|++       ..+|.+++++|||||.|++.+
T Consensus       157 ~d~sf~sl-------~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          157 IDVSFISL-------NLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             ECCSSSCG-------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEeeHhhH-------HHHHHHHHHHcCcCCEEEEEE
Confidence            98888764       578999999999999999864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.17  E-value=1.2e-10  Score=111.38  Aligned_cols=100  Identities=14%  Similarity=0.059  Sum_probs=75.9

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++....+.....      +...+.....+  .++||+|+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~------~~~~d~~~~~~--~~~~D~i~  137 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIE------PVQSRVEEFPS--EPPFDGVI  137 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEE------EEECCTTTSCC--CSCEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeE------EEecchhhCCc--cCCcCEEE
Confidence            579999999999999988865 3469999999999999999988766543211      34444333222  35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +.. +       .+...+++++.++|+|||+|++...
T Consensus       138 ~~~-~-------~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          138 SRA-F-------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSC-S-------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             Eec-c-------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            854 2       2346899999999999999999764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.17  E-value=9e-11  Score=115.29  Aligned_cols=101  Identities=17%  Similarity=0.116  Sum_probs=73.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sF  367 (597)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.|++.|+++.....   ..     .+...+....   ++.. ++|
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~v-----~~~~~d~~~~~~~~~~~-~~~  144 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NI-----IPILGDANKPQEYANIV-EKV  144 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TE-----EEEECCTTCGGGGTTTS-CCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCC---Ce-----EEEECCCCCcccccccC-ccE
Confidence            5789999999999999998876 44699999999999999998865441   11     0223332221   2333 579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|++     ++ ........+++++.++|||||+|++.+
T Consensus       145 D~v~~-----~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          145 DVIYE-----DV-AQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEE-----CC-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEE-----ec-CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            99983     32 233455788999999999999999973

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.17  E-value=7.8e-11  Score=121.87  Aligned_cols=102  Identities=16%  Similarity=0.089  Sum_probs=78.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|.++..+++.+.  .+|+|+|+|+.+++.|+++....+.....      +...+....++ ..++||+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~------~~~~d~~~~~~-~~~~fD~  147 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVI------FVCGDGYYGVP-EFSPYDV  147 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEESCGGGCCG-GGCCEEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeE------EEECChhhccc-cCCCeEE
Confidence            678999999999999998887642  36999999999999999998766543211      34444333332 2357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++..+++++    .      +++.++|||||++++.+...
T Consensus       148 Iv~~~~~~~~----~------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          148 IFVTVGVDEV----P------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             EEECSBBSCC----C------HHHHHHEEEEEEEEEEBCBG
T ss_pred             EEEcCCHHHH----H------HHHHHhcCCCcEEEEEECCC
Confidence            9999999987    2      57788999999999987544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.16  E-value=5e-11  Score=116.89  Aligned_cols=105  Identities=13%  Similarity=0.196  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC--CCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK--ALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~--~~sFD  368 (597)
                      ++.+|||||||+|..+..++... ..+|+|+|+++.+++.|++++...+...+..     +...+....++..  .++||
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~~fD  128 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIE-----LLFGDALQLGEKLELYPLFD  128 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEE-----EECSCGGGSHHHHTTSCCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECCHHHHHHhcccCCCcc
Confidence            46799999999999999988763 3599999999999999999987665432221     3333322222211  35799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|++....+       +...+|+.+.++|+|||+|++...
T Consensus       129 ~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          129 VLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             EEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEEcC
Confidence            999976653       456899999999999999999743

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.16  E-value=5.6e-10  Score=117.96  Aligned_cols=98  Identities=15%  Similarity=0.136  Sum_probs=74.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++       .+.     .+...|+.+.++  .+  |+|
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v-----~~~~~d~~~~~p--~~--D~v  265 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGV-----EHLGGDMFDGVP--KG--DAI  265 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTE-----EEEECCTTTCCC--CC--SEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCC-----EEEecCCCCCCC--CC--CEE
Confidence            56899999999999999988753 348999999 8888877642       111     133344444444  22  999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..++|+.  +.++...+|++++++|||||+|++...
T Consensus       266 ~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          266 FIKWICHDW--SDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             EEESCGGGB--CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             EEechhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            999999986  456778999999999999999988653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.15  E-value=4.1e-10  Score=113.71  Aligned_cols=120  Identities=14%  Similarity=0.236  Sum_probs=85.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++....+... .     .+...+....++  .++||+|
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-v-----~~~~~d~~~~~~--~~~fD~I  180 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-I-----HILQSDWFSALA--GQQFAMI  180 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCS-E-----EEECCSTTGGGT--TCCEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-e-----EEEEcchhhhcc--cCCccEE
Confidence            4679999999999999998854 34699999999999999999987665432 1     144444444343  3579999


Q ss_pred             EEccchhhh-----------ccC----------HHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhh
Q psy17742        371 SCQFCIHYS-----------FES----------VQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~l-----------Fes----------~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~  419 (597)
                      +++..++..           ++.          ......+++++.++|||||++++.....  ..+...+..
T Consensus       181 v~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  252 (276)
T 2b3t_A          181 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIL  252 (276)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHH
T ss_pred             EECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHH
Confidence            998433221           000          1456889999999999999999987543  455555543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.15  E-value=9.1e-11  Score=118.62  Aligned_cols=107  Identities=14%  Similarity=0.195  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhh-hhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||+|||+|..+..++..  ...+|+|+|+++.+++.|++++... +....      .+...+..+.++.  ++||
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v------~~~~~d~~~~~~~--~~fD  181 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV------RTSRSDIADFISD--QMYD  181 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE------EEECSCTTTCCCS--CCEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcE------EEEECchhccCcC--CCcc
Confidence            6789999999999999998876  2369999999999999999988665 42211      1334444443333  5799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      +|++.     +    ++...+|+++.++|||||++++.+++......
T Consensus       182 ~Vi~~-----~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~  219 (275)
T 1yb2_A          182 AVIAD-----I----PDPWNHVQKIASMMKPGSVATFYLPNFDQSEK  219 (275)
T ss_dssp             EEEEC-----C----SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHH
T ss_pred             EEEEc-----C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence            99982     2    34468999999999999999999998854433

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.14  E-value=1.4e-10  Score=124.86  Aligned_cols=105  Identities=19%  Similarity=0.219  Sum_probs=74.4

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHh-------hhhh-ccccccccceeehhhhc-cCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEE-------LKRK-EEARPYRRNVFSAELRS-QYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~-------~~~~-~~~~~~~~d~F~~dl~e-~l~  361 (597)
                      ++.+|||||||+|..+..++. .+..+|+|||+|+.+++.|++....       .+.. ....     +...|+.. ++.
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe-----fi~GD~~~lp~~  247 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT-----LERGDFLSEEWR  247 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE-----EEECCTTSHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE-----EEECcccCCccc
Confidence            678999999999999998775 4555799999999999999875432       1211 1121     33333221 111


Q ss_pred             CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ..-..||+|+++..++.     ++....|+++.+.|||||+||+.
T Consensus       248 d~~~~aDVVf~Nn~~F~-----pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          248 ERIANTSVIFVNNFAFG-----PEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             HHHHTCSEEEECCTTCC-----HHHHHHHHHHHTTSCTTCEEEES
T ss_pred             cccCCccEEEEcccccC-----chHHHHHHHHHHcCCCCcEEEEe
Confidence            10024999999876532     67888999999999999999985

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.14  E-value=9.4e-11  Score=114.13  Aligned_cols=103  Identities=11%  Similarity=0.030  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC------CEEEEEeCChHHHHHHHHHHHhhhh----hccccccccceeehhhhccCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV------KHVVFADIASVSIEDCKTRYEELKR----KEEARPYRRNVFSAELRSQYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~------~~V~GIDiS~~mIe~A~er~~~~~~----~~~~~~~~~d~F~~dl~e~l~  361 (597)
                      ++.+|||||||+|..+..++....      .+|+|+|+++.+++.|+++....+.    ....     .+...+....++
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v-----~~~~~d~~~~~~  154 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF-----KIIHKNIYQVNE  154 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE-----EEEECCGGGCCH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE-----EEEECChHhccc
Confidence            578999999999999998887542      4999999999999999998876542    1111     133334333220


Q ss_pred             ---CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        362 ---DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       362 ---~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                         ...++||+|++..+++++          ++++.++|||||+|++.++.
T Consensus       155 ~~~~~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASASEL----------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBSSC----------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEcc
Confidence               123569999999888765          37789999999999998864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.14  E-value=5.5e-11  Score=118.43  Aligned_cols=101  Identities=18%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++...........  + ..+..   ..++.  ..||.+.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~--~-~~~~~---~~~~~--~~~d~~~  108 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFN--F-RNAVL---ADFEQ--GRPSFTS  108 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCC--G-GGCCG---GGCCS--CCCSEEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccce--E-EEeCH---hHcCc--CCCCEEE
Confidence            467999999999999999998886699999999999999877543221110000  0 01111   12221  1245555


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..++..+       ..+|++++++|||||+|++.+
T Consensus       109 ~D~v~~~l-------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          109 IDVSFISL-------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ECCSSSCG-------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEhhhH-------HHHHHHHHHhccCCCEEEEEE
Confidence            54444332       579999999999999999965

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.14  E-value=2.6e-10  Score=120.32  Aligned_cols=97  Identities=16%  Similarity=0.170  Sum_probs=73.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|++.    .   ..     .+...+....++  .  ||+|
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~---~v-----~~~~~d~~~~~~--~--~D~v  271 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----S---GI-----EHVGGDMFASVP--Q--GDAM  271 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----T---TE-----EEEECCTTTCCC--C--EEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----C---CC-----EEEeCCcccCCC--C--CCEE
Confidence            56899999999999999988764 348899999 9999877642    0   01     133334333332  2  9999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..++|+.  +......+|++++++|||||+|++..
T Consensus       272 ~~~~~lh~~--~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          272 ILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEecccccC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999997  33445599999999999999999873

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.14  E-value=1e-10  Score=115.36  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=77.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--------
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--------  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--------  361 (597)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++...+...+..     +...+..+.++        
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~-----~~~~d~~~~~~~~~~~~~~  134 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIF-----LKLGSALETLQVLIDSKSA  134 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEE-----EEESCHHHHHHHHHHCSSC
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEE-----EEECCHHHHHHHHHhhccc
Confidence            46899999999999999988763  3699999999999999999987665433221     23333221111        


Q ss_pred             ------CC-C-CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        362 ------DK-A-LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       362 ------~~-~-~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                            .. . ++||+|++....       .....+++.+.++|||||+|++...
T Consensus       135 ~~~~~~f~~~~~~fD~I~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          135 PSWASDFAFGPSSIDLFFLDADK-------ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             CGGGTTTCCSTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccccccCCCCCcCEEEEeCCH-------HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                  01 1 469999998654       3456889999999999999999763

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.14  E-value=1.3e-10  Score=126.08  Aligned_cols=105  Identities=11%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHH-------HHHHHhhhhh-ccccccccceeehh-hhcc--
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDC-------KTRYEELKRK-EEARPYRRNVFSAE-LRSQ--  359 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A-------~er~~~~~~~-~~~~~~~~d~F~~d-l~e~--  359 (597)
                      ++.+|||||||+|..+..++.. +..+|+|+|+++.+++.|       ++++...+.. ...     .+...+ ....  
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV-----~~i~gD~~~~~~~  316 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV-----EFSLKKSFVDNNR  316 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE-----EEEESSCSTTCHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce-----EEEEcCccccccc
Confidence            6789999999999999998874 556899999999999998       6666554421 111     022222 1111  


Q ss_pred             CCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       360 l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +....++||+|+++.++ +.    +++..+|+++.++|||||.|++.
T Consensus       317 ~~~~~~~FDvIvvn~~l-~~----~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          317 VAELIPQCDVILVNNFL-FD----EDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHHGGGCSEEEECCTT-CC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccCCCCEEEEeCcc-cc----ccHHHHHHHHHHhCCCCeEEEEe
Confidence            11112469999997666 22    57778999999999999999986

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.14  E-value=1.1e-10  Score=114.06  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=77.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CC------CEEEEEeCChHHHHHHHHHHHhhh-----hhccccccccceeehhhhcc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GV------KHVVFADIASVSIEDCKTRYEELK-----RKEEARPYRRNVFSAELRSQ  359 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~------~~V~GIDiS~~mIe~A~er~~~~~-----~~~~~~~~~~d~F~~dl~e~  359 (597)
                      ++.+|||||||+|..+..++.. +.      .+|+|+|+++.+++.|+++....+     ....      .+...+....
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v------~~~~~d~~~~  157 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL------LIVEGDGRKG  157 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE------EEEESCGGGC
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce------EEEECCcccC
Confidence            5789999999999999888763 31      489999999999999999877654     1111      1344444444


Q ss_pred             CCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       360 l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++. .++||+|++..+++++          ++++.++|||||+|++.+..
T Consensus       158 ~~~-~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          158 YPP-NAPYNAIHVGAAAPDT----------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CGG-GCSEEEEEECSCBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             CCc-CCCccEEEECCchHHH----------HHHHHHHhcCCCEEEEEEec
Confidence            443 2579999999999876          26789999999999998865

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.13  E-value=1.1e-10  Score=122.43  Aligned_cols=112  Identities=16%  Similarity=0.103  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCCC---CCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYED---KALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~~---~~~sF  367 (597)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+... ...     ++..|..+.++.   ..++|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~-----~i~~D~~~~l~~~~~~~~~f  226 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIR-----WICEDAMKFIQREERRGSTY  226 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEE-----EECSCHHHHHHHHHHHTCCB
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceE-----EEECcHHHHHHHHHhcCCCc
Confidence            467999999999999999998886 99999999999999999987765432 121     333443222211   12469


Q ss_pred             eEEEEccc---hh---hhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFC---IH---YSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~v---Lh---~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++.-.   .+   .++....+...+++.+.++|+|||+|+++...
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            99999422   11   01112367889999999999999998876644

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.12  E-value=6.6e-10  Score=117.32  Aligned_cols=98  Identities=17%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++       .+.     .+...|+.++++  .+  |+|
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v-----~~~~~D~~~~~p--~~--D~v  263 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGV-----THVGGDMFKEVP--SG--DTI  263 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTE-----EEEECCTTTCCC--CC--SEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCe-----EEEeCCcCCCCC--CC--CEE
Confidence            56899999999999999988753 348999999 8888877642       111     133344444444  23  999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..++|+.  +.++...+|++++++|||||+|++...
T Consensus       264 ~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          264 LMKWILHDW--SDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             EehHHhccC--CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            999999986  456778999999999999999988643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.12  E-value=1.6e-10  Score=112.38  Aligned_cols=103  Identities=19%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CC-CEEEEEeCChHHHHHHHHHHHhhhh----hccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GV-KHVVFADIASVSIEDCKTRYEELKR----KEEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~-~~V~GIDiS~~mIe~A~er~~~~~~----~~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||||||+|..+..++.. +. .+|+|+|+++.+++.|+++....+.    ....     .+...+...... ..+
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v-----~~~~~d~~~~~~-~~~  150 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV-----QLVVGDGRMGYA-EEA  150 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE-----EEEESCGGGCCG-GGC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE-----EEEECCcccCcc-cCC
Confidence            5789999999999999988765 32 4999999999999999998766432    1111     133333332222 235


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +||+|++..+++++          ++++.++|||||+|++++...
T Consensus       151 ~fD~i~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          151 PYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             CEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEESCT
T ss_pred             CcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEecC
Confidence            79999999888665          357889999999999988654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.12  E-value=4e-10  Score=118.55  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++..|+ +.+++.|+++..... ..+..     +...|+... +.  ..+|+|
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~-----~~~gD~~~~-~~--~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQID-----FQEGDFFKD-PL--PEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEE-----EEESCTTTS-CC--CCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCcee-----eecCccccC-CC--CCceEE
Confidence            45789999999999999988764 347888897 889999988765433 22221     223332222 22  348999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..+||+.  +.++...+|+++++.|+|||.+++.-
T Consensus       249 ~~~~vlh~~--~d~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          249 ILARVLHDW--ADGKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             EEESSGGGS--CHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EeeeecccC--CHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            999999986  45677899999999999999998864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.12  E-value=2.6e-10  Score=112.63  Aligned_cols=109  Identities=21%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhh-hhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||+|||+|.++..++.. + ..+|+|+|+++.+++.|++++... +.. ..     .+...+..+. +...++||
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~-~v-----~~~~~d~~~~-~~~~~~~D  168 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVE-NV-----RFHLGKLEEA-ELEEAAYD  168 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCC-CE-----EEEESCGGGC-CCCTTCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-CE-----EEEECchhhc-CCCCCCcC
Confidence            6789999999999999998876 3 369999999999999999987665 411 11     1334443332 22235799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHH
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMAR  416 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~  416 (597)
                      +|++..         ++...+|+++.++|+|||++++..+....+...
T Consensus       169 ~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  207 (258)
T 2pwy_A          169 GVALDL---------MEPWKVLEKAALALKPDRFLVAYLPNITQVLEL  207 (258)
T ss_dssp             EEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHH
T ss_pred             EEEECC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHH
Confidence            999832         334578999999999999999999988555443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.12  E-value=1.6e-10  Score=119.23  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=76.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhh---hccccccccceeehhhhccCCC-CCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKR---KEEARPYRRNVFSAELRSQYED-KALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~---~~~~~~~~~d~F~~dl~e~l~~-~~~s  366 (597)
                      ++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++.....   ..+.     .+...|....+.. ..++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-----~~~~~D~~~~~~~~~~~~  169 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRA-----TVRVGDGLAFVRQTPDNT  169 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-----EEEESCHHHHHHSSCTTC
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-----EEEECcHHHHHHhccCCc
Confidence            4689999999999999998876 356999999999999999998743211   1111     1333342222211 2357


Q ss_pred             eeEEEEccchhhhccCHHHH--HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        367 LDLVSCQFCIHYSFESVQQA--RCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~--~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ||+|++....++.  ....+  ..++++++++|||||+|++...+.
T Consensus       170 fDvIi~d~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          170 YDVVIIDTTDPAG--PASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             eeEEEECCCCccc--cchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            9999997665442  11122  689999999999999999986553

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.11  E-value=5.7e-11  Score=118.58  Aligned_cols=104  Identities=14%  Similarity=0.106  Sum_probs=77.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-----C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-----A  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-----~  364 (597)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++...+...+..     +...+..+.++..     .
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~-----~~~gda~~~l~~~~~~~~~  134 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIK-----LRLGPALDTLHSLLNEGGE  134 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEE-----EEESCHHHHHHHHHHHHCS
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHHHhhccCC
Confidence            46799999999999999988742  3599999999999999999988766543321     3333322222211     2


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++||+|++....       .....+|+.+.++|||||+|++..
T Consensus       135 ~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          135 HQFDFIFIDADK-------TNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             SCEEEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEeEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence            579999987543       455679999999999999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.11  E-value=3.1e-10  Score=110.65  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~sF  367 (597)
                      ++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.++++.....   ..     .+...+....  +....++|
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~---~v-----~~~~~d~~~~~~~~~~~~~~  144 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NI-----VPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TE-----EEEECCTTCGGGGTTTCCCE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccC---CC-----EEEEccCCCcchhhcccCCc
Confidence            5789999999999999998865 3 2599999999999999998876541   11     1333332221  11112479


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|++....      ......+++++.++|||||+|++.+
T Consensus       145 D~v~~~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVAQ------PTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCC------HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999986541      1344566999999999999999974

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.11  E-value=1.8e-10  Score=115.32  Aligned_cols=104  Identities=11%  Similarity=0.013  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC------C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED------K  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~------~  363 (597)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.|++++...+...+..     +...+..+.++.      .
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~-----~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKID-----FREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEE-----EEESCHHHHHHHHHHSGGG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeE-----EEECCHHHHHHHHHhccCC
Confidence            45799999999999999888751  3599999999999999999987765533221     333332221111      1


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      .++||+|++....       .+...+++.+.++|||||+|++..
T Consensus       154 ~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          154 HGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             TTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CCCEEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEec
Confidence            3579999986442       345689999999999999999864

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.11  E-value=1.5e-10  Score=123.56  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=79.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++++|||||||+|.++..+++.|..+|+|||.|+ |++.|++....++...+..     ++..++ +.+..+ ++||+|+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~-----~i~~~~-~~~~lp-e~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVH-----VLPGPV-ETVELP-EQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEE-----EEESCT-TTCCCS-SCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEE-----EEeeee-eeecCC-ccccEEE
Confidence            4789999999999999989999988999999996 8899999888776654431     333332 223332 4799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +-..-+. +..+..+..++....++|||||.++.
T Consensus       155 sE~~~~~-l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          155 SEWMGYG-LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCCCBTT-BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             eeccccc-ccccchhhhHHHHHHhhCCCCceECC
Confidence            8543322 23445678899999999999998863

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.10  E-value=3.4e-10  Score=118.69  Aligned_cols=117  Identities=15%  Similarity=0.058  Sum_probs=84.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..++..+  ...++|+|+++.+++.|++++...+.. ..     .+...|..+ ++.....||+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i-----~~~~~D~~~-~~~~~~~~D~  275 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WI-----RFLRADARH-LPRFFPEVDR  275 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TC-----EEEECCGGG-GGGTCCCCSE
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ce-----EEEeCChhh-CccccCCCCE
Confidence            56789999999999999987743  358999999999999999998877654 22     134444332 3332345999


Q ss_pred             EEEccchhhhccC----HHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        370 VSCQFCIHYSFES----VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       370 Vi~~~vLh~lFes----~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      |+++..++.....    ......+++.+.++|||||.+++.+++...+..
T Consensus       276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~  325 (354)
T 3tma_A          276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKR  325 (354)
T ss_dssp             EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHH
T ss_pred             EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence            9997554332111    123478999999999999999999998865543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.10  E-value=3.2e-10  Score=111.30  Aligned_cols=111  Identities=12%  Similarity=0.158  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.|+++....+.....     .+...+..+.+. ..++||+|+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-----~~~~~d~~~~~~-~~~~~D~v~  163 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNV-----KFFNVDFKDAEV-PEGIFHAAF  163 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTE-----EEECSCTTTSCC-CTTCBSEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcE-----EEEEcChhhccc-CCCcccEEE
Confidence            5789999999999999998877 469999999999999999988765432111     133344333331 224699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      +..         .++..+++++.++|+|||++++.+++.+.+.....
T Consensus       164 ~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  201 (248)
T 2yvl_A          164 VDV---------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLE  201 (248)
T ss_dssp             ECS---------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHH
T ss_pred             ECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence            842         24457899999999999999999998766554433

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.10  E-value=7.9e-10  Score=110.06  Aligned_cols=116  Identities=12%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+++.+++.|+++....+...+..     +...+....++.. .+||+|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~-----~~~~d~l~~l~~~-~~~D~I   88 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQ-----VRLANGLAAFEET-DQVSVI   88 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEE-----EEECSGGGGCCGG-GCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEE-----EEECchhhhcccC-cCCCEE
Confidence            56899999999999999999876 4589999999999999999998877654331     4445554555542 259988


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~  419 (597)
                      +...+-.      .-...+|..+...|+|||+||+..... ..+...+..
T Consensus        89 viaG~Gg------~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~  132 (225)
T 3kr9_A           89 TIAGMGG------RLIARILEEGLGKLANVERLILQPNNREDDLRIWLQD  132 (225)
T ss_dssp             EEEEECH------HHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             EEcCCCh------HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHH
Confidence            7654321      346789999999999999999977654 444455544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.10  E-value=9.6e-11  Score=130.97  Aligned_cols=110  Identities=19%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFD  368 (597)
                      .+.+|||||||.|.++..+++.|. .|+|||+|+.+|+.|+.++.+.+.....      +...+   +.....  .++||
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~------~~~~~~~~~~~~~~--~~~fD  136 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAE------FRVGRIEEVIAALE--EGEFD  136 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEE------EEECCHHHHHHHCC--TTSCS
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceE------EEECCHHHHhhhcc--CCCcc
Confidence            468999999999999999999995 9999999999999999988766532211      33332   222222  35799


Q ss_pred             EEEEccchhhhccCHHHHH--HHHHHHHHhccCCcEE-EEEeCChhHHH
Q psy17742        369 LVSCQFCIHYSFESVQQAR--CMLKNAAECLKPGGFF-VGTVPDSNQIM  414 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~--~~L~~i~rlLKPGG~f-Iit~pn~~~i~  414 (597)
                      +|+|..+|||+    .++.  ..+..+.+.|+++|.. ++++...+.++
T Consensus       137 ~v~~~e~~ehv----~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~  181 (569)
T 4azs_A          137 LAIGLSVFHHI----VHLHGIDEVKRLLSRLADVTQAVILELAVKEEPF  181 (569)
T ss_dssp             EEEEESCHHHH----HHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSS
T ss_pred             EEEECcchhcC----CCHHHHHHHHHHHHHhccccceeeEEeccccccc
Confidence            99999999998    4433  2344566667776654 44555555444

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.10  E-value=3e-10  Score=114.06  Aligned_cols=111  Identities=16%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhh-h-hhccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEEL-K-RKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~-~-~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ++.+|||+|||+|.++..++.. + ..+|+|+|+++.+++.|++++... + .....     .+...+.... +...++|
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v-----~~~~~d~~~~-~~~~~~~  172 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW-----RLVVSDLADS-ELPDGSV  172 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE-----EEECSCGGGC-CCCTTCE
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcE-----EEEECchHhc-CCCCCce
Confidence            5789999999999999998874 2 369999999999999999987665 3 11111     1333333222 2223579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY  417 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l  417 (597)
                      |+|++..         .++..+|+++.++|+|||+|++.+++.+.+...+
T Consensus       173 D~v~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  213 (280)
T 1i9g_A          173 DRAVLDM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIV  213 (280)
T ss_dssp             EEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHH
T ss_pred             eEEEECC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence            9999842         2334789999999999999999999986655433

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.09  E-value=2.4e-10  Score=125.51  Aligned_cols=106  Identities=14%  Similarity=0.133  Sum_probs=79.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++....+...+..     ++..++.+ ++.+ ++||+|+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~-----~~~~d~~~-~~~~-~~fD~Iv  229 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIV-----VIPGKVEE-VSLP-EQVDIII  229 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEE-----EEESCTTT-CCCS-SCEEEEE
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEE-----EEECchhh-CccC-CCeEEEE
Confidence            4689999999999999998887767999999998 9999999887765532221     34444332 2222 4799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +..++++. . .++....+..+.++|||||++++..
T Consensus       230 s~~~~~~~-~-~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          230 SEPMGYML-F-NERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CCCCHHHH-T-CHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EeCchHhc-C-cHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            98776665 2 2456677889999999999998543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.09  E-value=7.2e-11  Score=110.63  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC---CCCc
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED---KALE  366 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~---~~~s  366 (597)
                      .+++.+|||||||.               +++|+|+.|++.|+++.... ..         +...++. .++.   ..++
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~~-~~---------~~~~d~~-~~~~~~~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGNE-GR---------VSVENIK-QLLQSAHKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTTT-SE---------EEEEEGG-GGGGGCCCSSC
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcccC-cE---------EEEechh-cCccccCCCCC
Confidence            34789999999995               24999999999999886431 11         3333322 2222   3467


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ||+|+|.+++||+.   .+...+|++++++|||||+|++..
T Consensus        64 fD~V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           64 FDIILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             EEEEEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeEEEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEc
Confidence            99999999999961   235789999999999999999954

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.09  E-value=8.3e-11  Score=107.81  Aligned_cols=102  Identities=18%  Similarity=0.273  Sum_probs=71.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-----CC--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-----YE--D  362 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-----l~--~  362 (597)
                      ++.+|||+|||+|.++..++.. + ..+++|+|+++ +++.       .    ..     .+...+....     ++  .
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------~----~~-----~~~~~d~~~~~~~~~~~~~~   84 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------V----GV-----DFLQGDFRDELVMKALLERV   84 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------T----TE-----EEEESCTTSHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------C----cE-----EEEEcccccchhhhhhhccC
Confidence            5689999999999999988876 3 26999999999 7643       0    01     0222222111     00  1


Q ss_pred             CCCceeEEEEccchhhhccCH--HH------HHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        363 KALELDLVSCQFCIHYSFESV--QQ------ARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~lFes~--~d------~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      ..++||+|++..++|+. ...  +.      ...+++++.++|+|||.+++.++...
T Consensus        85 ~~~~~D~i~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           85 GDSKVQVVMSDMAPNMS-GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             TTCCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             CCCceeEEEECCCcccc-CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            23579999998887764 211  11      16899999999999999999887663

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.09  E-value=3.1e-10  Score=121.09  Aligned_cols=114  Identities=13%  Similarity=0.142  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCC---CCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYE---DKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~---~~~~sF  367 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+... ...     ++..|..+.++   ....+|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~-----~~~~D~~~~l~~~~~~~~~f  286 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQ-----LVVMDVFDYFKYARRHHLTY  286 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEE-----EEESCHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceE-----EEECCHHHHHHHHHHhCCCc
Confidence            468999999999999999998776799999999999999999988766532 221     44444322221   123479


Q ss_pred             eEEEEccch-----hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        368 DLVSCQFCI-----HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~~vL-----h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+|++.-..     +..+........+++.+.++|+|||+|++++...
T Consensus       287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            999985332     2332334677789999999999999999988655

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.08  E-value=1e-09  Score=109.66  Aligned_cols=116  Identities=13%  Similarity=0.076  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ ..+|+|+|+++.+++.|+++....+...+..     +...|..+.+... .+||+|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~-----~~~gD~l~~~~~~-~~~D~I   94 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKID-----VRLANGLSAFEEA-DNIDTI   94 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEE-----EEECSGGGGCCGG-GCCCEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECchhhccccc-cccCEE
Confidence            57899999999999999998876 4589999999999999999998877654332     4444544444332 259998


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~  419 (597)
                      +......      .-...+|......|+++|+||+.-... +.+...+..
T Consensus        95 viaGmGg------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~  138 (230)
T 3lec_A           95 TICGMGG------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAA  138 (230)
T ss_dssp             EEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             EEeCCch------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHH
Confidence            7654331      346788999999999999999987655 455555544

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.08  E-value=4.8e-10  Score=117.23  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++|+|+ +.+++.|++.    .  . .     .+...++.+.++    .||+|
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--~-v-----~~~~~d~~~~~p----~~D~v  250 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----N--N-L-----TYVGGDMFTSIP----NADAV  250 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----T--T-E-----EEEECCTTTCCC----CCSEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----C--C-c-----EEEeccccCCCC----CccEE
Confidence            45799999999999999988653 348999999 9999887652    1  0 1     133333333333    29999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccC---CcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKP---GGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKP---GG~fIit~p  408 (597)
                      ++..++|+.  +..+...+|++++++|||   ||+|++..+
T Consensus       251 ~~~~~lh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          251 LLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             EeehhhccC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            999999997  334455999999999999   999998754

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.07  E-value=3.4e-10  Score=115.81  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce---e
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL---D  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF---D  368 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+...+..     ++..++...++   ++|   |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~-----~~~~D~~~~~~---~~f~~~D  194 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFF-----VRKGEFLEPFK---EKFASIE  194 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEE-----EEESSTTGGGG---GGTTTCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceE-----EEECcchhhcc---cccCCCC
Confidence            357899999999999999887633599999999999999999987766543221     44444444332   358   9


Q ss_pred             EEEEccchhhh---------ccCH------HHHHHHHHHHH-HhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYS---------FESV------QQARCMLKNAA-ECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~l---------Fes~------~d~~~~L~~i~-rlLKPGG~fIit~pn~  410 (597)
                      +|+++-.....         ++..      .+...+++++. +.|+|||+|++.+...
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            99997221100         0111      12237899999 9999999999987655

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.07  E-value=5.4e-10  Score=110.82  Aligned_cols=104  Identities=10%  Similarity=-0.025  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCC---C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYED---K  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~---~  363 (597)
                      ++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|++++...+...+..     +...+..+   .+..   .
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~-----~~~gda~~~l~~l~~~~~~  144 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKIN-----FIESDAMLALDNLLQGQES  144 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEE-----EEESCHHHHHHHHHHSTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHHHHhccCC
Confidence            4679999999999999998865 1 3699999999999999999987765543321     33333221   1210   1


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      .++||+|++....       .....+++.+.++|+|||+|++..
T Consensus       145 ~~~fD~I~~d~~~-------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          145 EGSYDFGFVDADK-------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             TTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCcCEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEec
Confidence            3579999986432       456789999999999999999864

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.07  E-value=6e-10  Score=115.76  Aligned_cols=113  Identities=20%  Similarity=0.260  Sum_probs=79.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CC-CEEEEEeCChHHHHHHHHHHHhhhh----------hccccccccceeehhhhcc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GV-KHVVFADIASVSIEDCKTRYEELKR----------KEEARPYRRNVFSAELRSQ  359 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~-~~V~GIDiS~~mIe~A~er~~~~~~----------~~~~~~~~~d~F~~dl~e~  359 (597)
                      ++.+|||+|||+|.++..++.. |. .+|+|+|+++.+++.|+++....+.          ....     .+...+..+.
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v-----~~~~~d~~~~  179 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-----DFIHKDISGA  179 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-----EEEESCTTCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce-----EEEECChHHc
Confidence            6789999999999999998875 43 6999999999999999998875430          0111     1333443332


Q ss_pred             C-CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        360 Y-EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       360 l-~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      + +...++||+|++.....         ..++.++.++|||||+|++..++...+...+.
T Consensus       180 ~~~~~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~  230 (336)
T 2b25_A          180 TEDIKSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLD  230 (336)
T ss_dssp             C-------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred             ccccCCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence            2 22235699999854321         23889999999999999999998876665444

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.07  E-value=4.4e-10  Score=120.51  Aligned_cols=111  Identities=14%  Similarity=0.005  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..|. .|+|+|+|+.+++.|++++..++....       +...|..+.++...+.||+|+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~-------~~~~D~~~~l~~~~~~fD~Ii  285 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVD-------IRHGEALPTLRGLEGPFHHVL  285 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCE-------EEESCHHHHHHTCCCCEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCc-------EEEccHHHHHHHhcCCCCEEE
Confidence            478999999999999999998886 599999999999999999877665421       223343322221123499999


Q ss_pred             Eccch-h----hhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCI-H----YSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vL-h----~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +.-.. .    .++........++..+.++|||||+|++.+.+.
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            86432 1    011112566789999999999999999776554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.07  E-value=7.5e-10  Score=111.49  Aligned_cols=116  Identities=11%  Similarity=0.014  Sum_probs=86.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ ..+|+|+|+++.+++.|+++....+...+..     +...|..+.+... .+||+|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~-----v~~gD~l~~~~~~-~~~D~I   94 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQID-----VRKGNGLAVIEKK-DAIDTI   94 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEE-----EEECSGGGGCCGG-GCCCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEE-----EEecchhhccCcc-ccccEE
Confidence            57899999999999999998876 4589999999999999999998877654331     4444544444331 249998


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~  419 (597)
                      ++..+.-      .-...+|......|+++|+||+.-... +.+...+..
T Consensus        95 viagmGg------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~  138 (244)
T 3gnl_A           95 VIAGMGG------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQ  138 (244)
T ss_dssp             EEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             EEeCCch------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHH
Confidence            7654331      346788999999999999999987654 455555544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.06  E-value=6.2e-10  Score=109.79  Aligned_cols=105  Identities=15%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh---ccCCCCC--
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR---SQYEDKA--  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~---e~l~~~~--  364 (597)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.|++++...+...+..     +...+..   ..++...  
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~-----~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKIS-----LRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEE-----EEESCHHHHHHHHHTSSSC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHHHHhcCCC
Confidence            46799999999999999988752  3599999999999999999887665433221     3333321   1222212  


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++||+|++....       .+...+++++.++|+|||+|++...
T Consensus       147 ~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          147 PEFDLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             CCEEEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             CCcCEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999987543       4567899999999999999999643

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.06  E-value=2.6e-09  Score=102.23  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=76.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+..  .     .+...+... ++   ++||+|+
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~-----~~~~~d~~~-~~---~~~D~v~  117 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--F-----KVFIGDVSE-FN---SRVDIVI  117 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--E-----EEEESCGGG-CC---CCCSEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC--E-----EEEECchHH-cC---CCCCEEE
Confidence            56899999999999999998887668999999999999999987765431  1     134444332 32   3699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +...+|..  .......+++.+.++|  ||.+++.+++.
T Consensus       118 ~~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~~~~~  152 (207)
T 1wy7_A          118 MNPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIHLAKP  152 (207)
T ss_dssp             ECCCCSSS--STTTTHHHHHHHHHHC--SEEEEEEECCH
T ss_pred             EcCCCccc--cCCchHHHHHHHHHhc--CcEEEEEeCCc
Confidence            99887765  1123457889999998  67666554444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.05  E-value=6e-10  Score=112.42  Aligned_cols=107  Identities=16%  Similarity=0.244  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|++++...+.....     .+...+..+.++.  ++||+
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-----~~~~~d~~~~~~~--~~~D~  184 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-----TIKVRDISEGFDE--KDVDA  184 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-----EEECCCGGGCCSC--CSEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-----EEEECCHHHcccC--CccCE
Confidence            5789999999999999998876 3 469999999999999999988765532222     1334444443433  46999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      |++..         +++..+|+++.++|+|||+|++..+....+.
T Consensus       185 V~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  220 (277)
T 1o54_A          185 LFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQ  220 (277)
T ss_dssp             EEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred             EEECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            99842         2345789999999999999999999765443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.05  E-value=6.6e-10  Score=112.74  Aligned_cols=103  Identities=17%  Similarity=0.016  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.|++++...+..+..      ++..+..+. +. .++||+|
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~------~~~~d~~~~-~~-~~~~D~V  190 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI------PILADNRDV-EL-KDVADRV  190 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEE------EEESCGGGC-CC-TTCEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEE------EEECChHHc-Cc-cCCceEE
Confidence            57899999999999999988763 459999999999999999998776553321      444444333 32 3579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++....        ....++..+.++|+|||+++++....
T Consensus       191 i~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          191 IMGYVH--------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            987654        33468899999999999999887654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.04  E-value=4.5e-10  Score=113.89  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=77.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~~~s  366 (597)
                      ++.+|||+|||+|+.+..++..  +..+|+|+|+++.+++.++++....+.....      +...|......   ...++
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~------~~~~D~~~~~~~~~~~~~~  156 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTI------IINADMRKYKDYLLKNEIF  156 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEESCHHHHHHHHHHTTCC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEE------EEeCChHhcchhhhhcccc
Confidence            5789999999999999988863  3369999999999999999998776543211      33333221111   01356


Q ss_pred             eeEEEEccc------hhh--------hccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        367 LDLVSCQFC------IHY--------SFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       367 FDvVi~~~v------Lh~--------lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ||+|++...      ++.        +.........+|+++.++|||||+|++++..
T Consensus       157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            999998622      210        0000123478999999999999999998754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.04  E-value=4.6e-10  Score=114.88  Aligned_cols=111  Identities=14%  Similarity=0.217  Sum_probs=75.2

Q ss_pred             CCEEEEECCCC--ChhHHHHHh--cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCC--
Q psy17742        293 PIKVLDMGSGK--GGDMLKWIN--GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDK--  363 (597)
Q Consensus       293 ~~rVLDLGCGt--G~~l~~la~--~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~--  363 (597)
                      ..+|||||||+  +..+..++.  ....+|+++|.|+.||+.|++++...... ..     .+..+|+...   +...  
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~-~~-----~~v~aD~~~~~~~l~~~~~  152 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEG-RT-----AYVEADMLDPASILDAPEL  152 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSS-EE-----EEEECCTTCHHHHHTCHHH
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCC-cE-----EEEEecccChhhhhccccc
Confidence            36899999997  445554433  23369999999999999999987653211 11     1444443221   1100  


Q ss_pred             CCcee-----EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        364 ALELD-----LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       364 ~~sFD-----vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .+.||     +|+++.+|||+ ...+++..+|+.+.+.|+|||+|+++....
T Consensus       153 ~~~~D~~~p~av~~~avLH~l-~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          153 RDTLDLTRPVALTVIAIVHFV-LDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             HTTCCTTSCCEEEEESCGGGS-CGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             ccccCcCCcchHHhhhhHhcC-CchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            12344     58889999998 333336899999999999999999987554

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.04  E-value=1.2e-09  Score=113.31  Aligned_cols=111  Identities=19%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.++++....+..+..      +...+... ++...++||+
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~------~~~~D~~~-~~~~~~~fD~  190 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI------LFHSSSLH-IGELNVEFDK  190 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEE------EESSCGGG-GGGGCCCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEE------EEECChhh-cccccccCCE
Confidence            6789999999999999998864  2358999999999999999998776543211      33333222 2112357999


Q ss_pred             EEEcc------chhhhcc-----CH-------HHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQF------CIHYSFE-----SV-------QQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~------vLh~lFe-----s~-------~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++..      +++...+     +.       .....+|+++.++|||||+|++++..
T Consensus       191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99842      2222100     00       11268999999999999999997643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.04  E-value=1.3e-09  Score=109.02  Aligned_cols=105  Identities=14%  Similarity=0.111  Sum_probs=70.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCC
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKAL  365 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~  365 (597)
                      ..++.+|||||||+|.++..++.. + ..+|+|+|+|+.|++.+.+......  + ..     ....|....  +....+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~--n-v~-----~i~~Da~~~~~~~~~~~  145 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP--N-IF-----PLLADARFPQSYKSVVE  145 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT--T-EE-----EEECCTTCGGGTTTTCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC--C-eE-----EEEcccccchhhhcccc
Confidence            347899999999999999888764 2 3599999999999765554433321  1 10     233332211  111124


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +||+|++..+.      ......++.++.++|||||+|++.+.
T Consensus       146 ~~D~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          146 NVDVLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             CEEEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            79999998654      13444566777779999999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.03  E-value=4.5e-10  Score=115.58  Aligned_cols=112  Identities=18%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhh--h-hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELK--R-KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~--~-~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++....  . ..+.     .+...|....++...++|
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v-----~~~~~D~~~~l~~~~~~f  164 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA-----EIVIANGAEYVRKFKNEF  164 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-----EEEESCHHHHGGGCSSCE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCce-----EEEECcHHHHHhhCCCCc
Confidence            3579999999999999998876 45799999999999999999875421  1 1111     133444333232223579


Q ss_pred             eEEEEccchhhhccCHH--HHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQ--QARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~--d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++...-++. ....  ....+++++.++|||||+|++.+.+
T Consensus       165 D~Ii~d~~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          165 DVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eEEEEcCCCccc-CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999985432211 1111  1268999999999999999998755

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.03  E-value=3.1e-10  Score=117.79  Aligned_cols=112  Identities=20%  Similarity=0.263  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhh----hccccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKR----KEEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~----~~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      .+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++.....    ..+.     .+...|....++...++
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v-----~~~~~D~~~~l~~~~~~  151 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA-----VLVIDDARAYLERTEER  151 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE-----EEEESCHHHHHHHCCCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCce-----EEEEchHHHHHHhcCCC
Confidence            4579999999999999998876 356999999999999999998754211    1111     13334433222222357


Q ss_pred             eeEEEEccchhhhccC-HHH--HHHHHHHHHHhccCCcEEEEEeC
Q psy17742        367 LDLVSCQFCIHYSFES-VQQ--ARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       367 FDvVi~~~vLh~lFes-~~d--~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ||+|++....+..... ...  ...++++++++|||||+|++...
T Consensus       152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            9999998665440000 011  36899999999999999998753

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.02  E-value=4.4e-10  Score=109.34  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCC--C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDK--A  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~--~  364 (597)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.|++++...+...+..     +...+..+   .+...  .
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~-----~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID-----LRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEE-----EEESCHHHHHHHHHHTTCT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEE-----EEEcCHHHHHHHHHhcCCC
Confidence            46799999999999999988752  3699999999999999999987665432221     33333221   12111  1


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++||+|++....       .....+++.+.++|+|||++++..
T Consensus       144 ~~~D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          144 GTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCccEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEEC
Confidence            469999996542       345688999999999999999864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.02  E-value=6.8e-10  Score=118.34  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~~~sFD  368 (597)
                      ++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++...+......     +...+..+.++   ...++||
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~-----~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMK-----FIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEE-----EEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccce-----EEECCHHHHHHHHHhhCCCCC
Confidence            468999999999999999998876799999999999999999987765532221     34444222221   1135799


Q ss_pred             EEEEccch-----hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCI-----HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vL-----h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +|++.-..     ..++........++..+.++|+|||+|++.+.+.
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            99995321     0111122667889999999999999999887665

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.02  E-value=1.5e-09  Score=103.71  Aligned_cols=100  Identities=18%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++..  .    .     .+...+... ++   ++||+|+
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--~----~-----~~~~~d~~~-~~---~~~D~v~  115 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--G----V-----NFMVADVSE-IS---GKYDTWI  115 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--T----S-----EEEECCGGG-CC---CCEEEEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--C----C-----EEEECcHHH-CC---CCeeEEE
Confidence            568999999999999999888776689999999999999998865  1    1     134444332 33   4799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +...+|+. . ......+++.+.++|  |+.+++..+..
T Consensus       116 ~~~p~~~~-~-~~~~~~~l~~~~~~~--g~~~~~~~~~~  150 (200)
T 1ne2_A          116 MNPPFGSV-V-KHSDRAFIDKAFETS--MWIYSIGNAKA  150 (200)
T ss_dssp             ECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred             ECCCchhc-c-CchhHHHHHHHHHhc--CcEEEEEcCch
Confidence            99999886 2 123357899999998  66555554443

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.02  E-value=3.6e-10  Score=115.17  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhh--h-hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELK--R-KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~--~-~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++....  . ..+.     .+...|....++...++|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv-----~v~~~D~~~~l~~~~~~f  149 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRV-----DVQVDDGFMHIAKSENQY  149 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTE-----EEEESCSHHHHHTCCSCE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCce-----EEEECcHHHHHhhCCCCe
Confidence            4689999999999999998876 56799999999999999999875431  1 1111     133333222222223579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++....+......-....+++.+.++|+|||+|++...+
T Consensus       150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            999996543221000001257999999999999999998755

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.02  E-value=4.4e-10  Score=116.28  Aligned_cols=113  Identities=16%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhh--hh-hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEEL--KR-KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~--~~-~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...  +. ..+.     .+...|....++...++|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv-----~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-----TLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-----EEEESCHHHHHHTCSSCE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-----EEEECcHHHHHhhCCCCc
Confidence            45799999999999999988764 469999999999999999987652  11 1111     133344322222223579


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++....+...........+++++.++|+|||+|++...+
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            999996554322000012357899999999999999998743

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.02  E-value=7e-10  Score=127.12  Aligned_cols=113  Identities=14%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..++.. .+..     ++..|..+.++...++||+|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~-----~i~~D~~~~l~~~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHR-----LIQADCLAWLREANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEE-----EEESCHHHHHHHCCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE-----EEecCHHHHHHhcCCCccEE
Confidence            46899999999999999988888778999999999999999998877654 1221     44455333333233579999


Q ss_pred             EEccch-h------hhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        371 SCQFCI-H------YSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       371 i~~~vL-h------~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++.-.. .      ..+....+...+++.+.++|+|||+|++++..
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            995421 0      11223367889999999999999999998865

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.01  E-value=7e-10  Score=105.57  Aligned_cols=102  Identities=9%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC--------
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY--------  360 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l--------  360 (597)
                      ++.+|||||||+|.++..++...   ..+|+|+|+|+...           .. ..     .+...++....        
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~-~v-----~~~~~d~~~~~~~~~~~~~   84 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IP-NV-----YFIQGEIGKDNMNNIKNIN   84 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CT-TC-----EEEECCTTTTSSCCC----
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CC-Cc-----eEEEccccchhhhhhcccc
Confidence            56899999999999999988653   35899999998320           00 00     02222211110        


Q ss_pred             ----------------CCCCCceeEEEEccchhhhccCHHH-------HHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        361 ----------------EDKALELDLVSCQFCIHYSFESVQQ-------ARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       361 ----------------~~~~~sFDvVi~~~vLh~lFes~~d-------~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                                      ....++||+|++..++|+.-.+..+       ...+|+++.++|||||.|++.+...
T Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             -------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                            0123579999998887763100111       2358999999999999999987654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.01  E-value=4.1e-10  Score=114.90  Aligned_cols=109  Identities=17%  Similarity=0.243  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh--hh--------hccccccccceeehhhhccCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL--KR--------KEEARPYRRNVFSAELRSQYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~--~~--------~~~~~~~~~d~F~~dl~e~l~  361 (597)
                      .+.+|||||||+|..+..+++.+..+|+++|+++.+++.|++++ ..  +.        ..+.     .+...|..+.+.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v-----~~~~~D~~~~l~  148 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKA-----KLTIGDGFEFIK  148 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSE-----EEEESCHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcE-----EEEECchHHHhc
Confidence            45799999999999999988776679999999999999999987 33  11        1111     133333222222


Q ss_pred             CCCCceeEEEEccchhhhccCHHH--HHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQ--ARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d--~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      . .++||+|++....+..  ....  ...+++.+.++|+|||+|++...+
T Consensus       149 ~-~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          149 N-NRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             H-CCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             c-cCCeeEEEECCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            2 3579999986553321  1122  267899999999999999997643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.00  E-value=4.7e-10  Score=114.62  Aligned_cols=111  Identities=20%  Similarity=0.322  Sum_probs=78.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhh---hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKR---KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~---~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.....   ..+.     .+...|....++...++|
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-----~~~~~D~~~~l~~~~~~f  152 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV-----NVFIEDASKFLENVTNTY  152 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTE-----EEEESCHHHHHHHCCSCE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcE-----EEEECChHHHHHhCCCCc
Confidence            45799999999999999988763 56999999999999999998754321   1111     133334322222223579


Q ss_pred             eEEEEccchhhhccCHHHH--HHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQA--RCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~--~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++....+..  .....  ..+++.+.++|+|||+|++...+
T Consensus       153 D~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          153 DVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEEEEECCCTTT--GGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eEEEEcCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            999996543332  11222  68999999999999999998654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.99  E-value=6.6e-10  Score=115.83  Aligned_cols=112  Identities=20%  Similarity=0.311  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhh--hh-hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEEL--KR-KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~--~~-~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...  +. ..+.     .+...|....++...++|
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v-----~~~~~D~~~~l~~~~~~f  190 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV-----NVFIEDASKFLENVTNTY  190 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTE-----EEEESCHHHHHHHCCSCE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-----EEEEccHHHHHhhcCCCc
Confidence            4579999999999999998876 3579999999999999999987652  11 1111     133444332222223579


Q ss_pred             eEEEEccchhhhccCHHHH--HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        368 DLVSCQFCIHYSFESVQQA--RCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~--~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+|++...-+.  ......  ..+++++.++|||||+|++...+.
T Consensus       191 DvIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  233 (321)
T 2pt6_A          191 DVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCESL  233 (321)
T ss_dssp             EEEEEECCCSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             eEEEECCcCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            99998653221  111222  689999999999999999987553

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.99  E-value=8.1e-10  Score=115.93  Aligned_cols=111  Identities=16%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhh--hhh-ccccccccceeehhhhccCCC-CCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEEL--KRK-EEARPYRRNVFSAELRSQYED-KALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~--~~~-~~~~~~~~d~F~~dl~e~l~~-~~~s  366 (597)
                      .+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++...  +.. .+.     .+...|....++. ..++
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv-----~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-----NLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTE-----EEEESCHHHHHHTSCTTC
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-----EEEECCHHHHHHhccCCC
Confidence            45799999999999999988763 469999999999999999987643  111 111     1344443322211 2357


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ||+|++....+......-....+++.+.++|+|||+|++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99999965421110000113689999999999999999974

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.99  E-value=1e-09  Score=103.84  Aligned_cols=106  Identities=15%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CC---------CEEEEEeCChHHHHHHHHHHHhhhhhcccccc-ccceeehh----h
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GV---------KHVVFADIASVSIEDCKTRYEELKRKEEARPY-RRNVFSAE----L  356 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~---------~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~-~~d~F~~d----l  356 (597)
                      ++.+|||||||+|.++..+++. +.         .+|+|+|+|+.+.           .. ..... ..+.....    +
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~-~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LE-GATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CT-TCEEECSCCTTSHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CC-CCeEEEeccCCCHHHHHHH
Confidence            5789999999999999998876 32         5899999998420           00 01000 11111111    0


Q ss_pred             hccCCCCCCceeEEEEccchhhhccCHHHH-------HHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        357 RSQYEDKALELDLVSCQFCIHYSFESVQQA-------RCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       357 ~e~l~~~~~sFDvVi~~~vLh~lFes~~d~-------~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      ...++.  ++||+|+|..++|+...+..+.       ..+++++.++|||||+|++.+....
T Consensus        90 ~~~~~~--~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           90 LEVLPG--RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             HHHSGG--GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             HHhcCC--CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            111222  3699999976554421111222       5889999999999999999987653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.98  E-value=2.4e-09  Score=113.47  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDv  369 (597)
                      ++.+||||| |+|.++..++..+. .+|+|+|+|+.|++.|+++....+.. +.     .++..|+...++. ..++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v-----~~~~~D~~~~l~~~~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DI-----EIFTFDLRKPLPDYALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CE-----EEECCCTTSCCCTTTSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CE-----EEEEChhhhhchhhccCCccE
Confidence            468999999 99999999887764 69999999999999999998776543 22     1444444443442 2347999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEeCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~pn  409 (597)
                      |++...++..     ....+++++.++||||| .+++.+..
T Consensus       245 Vi~~~p~~~~-----~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          245 FITDPPETLE-----AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEECCCSSHH-----HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEECCCCchH-----HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            9998776553     35889999999999999 44666544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.97  E-value=8e-10  Score=115.02  Aligned_cols=111  Identities=16%  Similarity=0.253  Sum_probs=73.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhh--hh-hccccccccceeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEEL--KR-KEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~--~~-~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...  +. ..+.     .+...|....++...++|
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv-----~~~~~D~~~~l~~~~~~f  182 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL-----DLFCGDGFEFLKNHKNEF  182 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTE-----EEECSCHHHHHHHCTTCE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCE-----EEEEChHHHHHHhcCCCc
Confidence            35799999999999999988763 569999999999999999987543  11 1111     133333222222223579


Q ss_pred             eEEEEccchhhhccCHHHH--HHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQFCIHYSFESVQQA--RCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~--~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++...-+..  .....  ..+++++.++|+|||+|++...+
T Consensus       183 D~Ii~d~~~~~~--~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          183 DVIITDSSDPVG--PAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             EEEEECCC---------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             eEEEEcCCCCCC--cchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence            999986543221  11122  68999999999999999998633

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.97  E-value=1.4e-09  Score=115.92  Aligned_cols=114  Identities=17%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhh-hccccccccceeehhhhccCC---CCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKR-KEEARPYRRNVFSAELRSQYE---DKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~-~~~~~~~~~d~F~~dl~e~l~---~~~~sF  367 (597)
                      ++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++..++. .....     ++..|..+.++   ....+|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~-----~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAE-----FVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEE-----EEESCHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceE-----EEECCHHHHHHHHHhcCCCC
Confidence            4689999999999999999988767999999999999999999877655 32221     34444222221   112469


Q ss_pred             eEEEEccchh-----hhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        368 DLVSCQFCIH-----YSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~~vLh-----~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+|++.-...     .++........++..+.++|+|||++++++...
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9999963210     112223577889999999999999999987554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.95  E-value=1.2e-09  Score=113.94  Aligned_cols=110  Identities=10%  Similarity=0.126  Sum_probs=74.9

Q ss_pred             CEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEEE
Q psy17742        294 IKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLVS  371 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvVi  371 (597)
                      .+|||||||+|..+..+++ ....+|++||+++.+++.|++++..... .+.     .++..|....+. ...++||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~-~rv-----~v~~~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRA-PRV-----KIRVDDARMVAESFTPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCT-TTE-----EEEESCHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCC-Cce-----EEEECcHHHHHhhccCCCCCEEE
Confidence            4999999999999999887 3334899999999999999998753211 111     133444222221 1235799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +....+......-....+++.++++|+|||+|++...+
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            96443321000001257999999999999999988754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=2.1e-09  Score=112.55  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.|++.      .. .     .+...++...++    .||+|
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~-v-----~~~~~d~~~~~~----~~D~v  255 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN------EN-L-----NFVGGDMFKSIP----SADAV  255 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC------SS-E-----EEEECCTTTCCC----CCSEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC------CC-c-----EEEeCccCCCCC----CceEE
Confidence            45799999999999999988764 348999999 7888776541      10 1     133333333332    39999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccC---CcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKP---GGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKP---GG~fIit~p  408 (597)
                      ++..++|+.  +.+....+|++++++|||   ||+|++..+
T Consensus       256 ~~~~vlh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          256 LLKWVLHDW--NDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             EEcccccCC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            999999997  334456999999999999   999988653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.94  E-value=1.1e-09  Score=116.36  Aligned_cols=111  Identities=19%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CCCCceeE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DKALELDL  369 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~~~sFDv  369 (597)
                      +.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..++..+ ..     ++..+..+.++   ...++||+
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~-----~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VR-----VLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EE-----EEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ce-----EEECCHHHHHHHHHhcCCCeeE
Confidence            578999999999999998877 4699999999999999999987766543 21     44444222221   11357999


Q ss_pred             EEEccch-----hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCI-----HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vL-----h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++.-..     ..++........++..+.++|+|||+|++++...
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            9995321     0111122567889999999999999999987654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.93  E-value=1e-09  Score=109.11  Aligned_cols=99  Identities=15%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCC-C
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YED-K  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~-~  363 (597)
                      ++.+|||||||+|..+..+++.     ...+|+|+|+|+.|++.|+.    ..  .+..     +...+....  ++. .
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~--~~v~-----~~~gD~~~~~~l~~~~  149 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM--ENIT-----LHQGDCSDLTTFEHLR  149 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC--TTEE-----EEECCSSCSGGGGGGS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC--CceE-----EEECcchhHHHHHhhc
Confidence            3579999999999999988875     23699999999999988871    11  1111     333332221  221 1


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHH-hccCCcEEEEEeC
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAE-CLKPGGFFVGTVP  408 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~r-lLKPGG~fIit~p  408 (597)
                      ..+||+|++..+ |      .+...+|.++.+ +|||||+|++...
T Consensus       150 ~~~fD~I~~d~~-~------~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          150 EMAHPLIFIDNA-H------ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SSCSSEEEEESS-C------SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             cCCCCEEEECCc-h------HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            236999998654 2      145679999997 9999999999653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.92  E-value=5.9e-09  Score=110.58  Aligned_cols=120  Identities=9%  Similarity=0.016  Sum_probs=84.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++...+......     +...|.. .++...++||+|
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~-----~~~~D~~-~~~~~~~~fD~I  290 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIK-----FIQGDAT-QLSQYVDSVDFA  290 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCE-----EEECCGG-GGGGTCSCEEEE
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceE-----EEECChh-hCCcccCCcCEE
Confidence            568899999999999999988763 389999999999999999988776532221     3344432 233333579999


Q ss_pred             EEccchhhhcc---CHHH-HHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        371 SCQFCIHYSFE---SVQQ-ARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       371 i~~~vLh~lFe---s~~d-~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      +++..++.-..   ...+ ...+++.+.++|  ||.+++.+.+...+...+..
T Consensus       291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~~  341 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAIAE  341 (373)
T ss_dssp             EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHHHH
T ss_pred             EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHHH
Confidence            99765443211   1123 377889999999  77777778888777665543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.89  E-value=4.8e-10  Score=114.66  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh-hhhcccccccccee--ehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVF--SAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F--~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|.++..++..  .+|+|+|+++ |+..++++.... ......     .++  ..|+. .++  .++||
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v-----~~~~~~~D~~-~l~--~~~fD  150 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNL-----ITFKSKVDVT-KME--PFQAD  150 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGG-----EEEECSCCGG-GCC--CCCCS
T ss_pred             CCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCe-----EEEeccCcHh-hCC--CCCcC
Confidence            6789999999999999998887  4899999999 643332211000 000011     133  33332 344  35799


Q ss_pred             EEEEccchhhhccCH--HHH--HHHHHHHHHhccCCc--EEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESV--QQA--RCMLKNAAECLKPGG--FFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~--~d~--~~~L~~i~rlLKPGG--~fIit~pn~  410 (597)
                      +|+|.++ ++. ...  +..  ..+|+.+.++|||||  .|++.+..+
T Consensus       151 ~Vvsd~~-~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~  196 (276)
T 2wa2_A          151 TVLCDIG-ESN-PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP  196 (276)
T ss_dssp             EEEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             EEEECCC-cCC-CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence            9999877 442 111  111  248999999999999  999987654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.89  E-value=4.7e-09  Score=105.50  Aligned_cols=100  Identities=17%  Similarity=-0.001  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||.|-++..|.  +...|+|+||++.|++.++++....+....       +...|+....+  .++||+|+
T Consensus       105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~-------~~v~D~~~~~~--~~~~DvvL  173 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFT-------FALQDVLCAPP--AEAGDLAL  173 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEE-------EEECCTTTSCC--CCBCSEEE
T ss_pred             CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCce-------EEEeecccCCC--CCCcchHH
Confidence            57899999999999999888  546999999999999999999766553321       33344333332  24799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +.-++|++ ++.  ....+-++...|+++|++|-
T Consensus       174 llk~lh~L-E~q--~~~~~~~ll~aL~~~~vvVs  204 (253)
T 3frh_A          174 IFKLLPLL-ERE--QAGSAMALLQSLNTPRMAVS  204 (253)
T ss_dssp             EESCHHHH-HHH--STTHHHHHHHHCBCSEEEEE
T ss_pred             HHHHHHHh-hhh--chhhHHHHHHHhcCCCEEEE
Confidence            99999998 322  22333488889999976654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.88  E-value=8.8e-09  Score=111.93  Aligned_cols=112  Identities=20%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFD  368 (597)
                      ++.+|||+|||+|+.+..++..  +...|+|+|+++.+++.++++....+..+..      +...+.....+ ...++||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~------~~~~D~~~~~~~~~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVK------PLVKDARKAPEIIGEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEE------EECSCTTCCSSSSCSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEE------EEEcChhhcchhhccCCCC
Confidence            6789999999999999988764  2258999999999999999998766543211      33333222111 2225699


Q ss_pred             EEEEc------cchhhhcc-----CHH-------HHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        369 LVSCQ------FCIHYSFE-----SVQ-------QARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       369 vVi~~------~vLh~lFe-----s~~-------d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +|++.      .+++...+     +..       ....+|+++.++|||||+|++++..
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99962      22332100     000       1167899999999999999987653

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.88  E-value=4.8e-10  Score=113.95  Aligned_cols=106  Identities=15%  Similarity=0.067  Sum_probs=68.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh-hhhcccccccccee--ehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVF--SAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F--~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|.++..++..  .+|+|+|+++ |+..++++.... ......     .++  ..|+. .++  .++||
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v-----~~~~~~~D~~-~l~--~~~fD  142 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNI-----VKFKSRVDIH-TLP--VERTD  142 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGG-----EEEECSCCTT-TSC--CCCCS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCe-----EEEecccCHh-HCC--CCCCc
Confidence            6789999999999999998877  5899999999 543322110000 000001     123  33322 244  35799


Q ss_pred             EEEEccchhhhccCH--HHH--HHHHHHHHHhccCCc--EEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESV--QQA--RCMLKNAAECLKPGG--FFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~--~d~--~~~L~~i~rlLKPGG--~fIit~pn~  410 (597)
                      +|+|.++ ++. ...  +..  ..+|..+.++|||||  .|++.+..+
T Consensus       143 ~V~sd~~-~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~  188 (265)
T 2oxt_A          143 VIMCDVG-ESS-PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP  188 (265)
T ss_dssp             EEEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred             EEEEeCc-ccC-CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence            9999877 442 111  111  138999999999999  999988654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.87  E-value=2.8e-09  Score=114.30  Aligned_cols=97  Identities=19%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             CCCEEEEECCC------CChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCC-
Q psy17742        292 SPIKVLDMGSG------KGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYE-  361 (597)
Q Consensus       292 ~~~rVLDLGCG------tG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~-  361 (597)
                      ++.+|||||||      +|+.+..++..  ...+|+|+|+|+.|..      .    ..+.     .++..|..+ ++. 
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------~----~~rI-----~fv~GDa~dlpf~~  280 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------D----ELRI-----RTIQGDQNDAEFLD  280 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------C----BTTE-----EEEECCTTCHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------c----CCCc-----EEEEecccccchhh
Confidence            46899999999      66666665543  2359999999999831      1    1111     133433221 111 


Q ss_pred             ---CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        362 ---DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       362 ---~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                         ...++||+|+|.. .|+.    .+...+|++++++|||||+|++...
T Consensus       281 ~l~~~d~sFDlVisdg-sH~~----~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          281 RIARRYGPFDIVIDDG-SHIN----AHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             HHHHHHCCEEEEEECS-CCCH----HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             hhhcccCCccEEEECC-cccc----hhHHHHHHHHHHhcCCCeEEEEEec
Confidence               1135799999975 4665    7888999999999999999999754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.85  E-value=5.6e-09  Score=107.03  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..|..+|+++|+++.+++.++++...++...+..     .+..|..+...  .+.||.|+
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~-----~~~~D~~~~~~--~~~~D~Vi  197 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMS-----AYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEE-----EECSCTTTCCC--CSCEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEeCcHHHhcc--ccCCCEEE
Confidence            689999999999999999988887799999999999999999998877665432     44444333222  35799998


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +....        ....+|..+.++|||||++.+
T Consensus       198 ~~~p~--------~~~~~l~~a~~~lk~gG~ih~  223 (278)
T 3k6r_A          198 MGYVV--------RTHEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             ECCCS--------SGGGGHHHHHHHEEEEEEEEE
T ss_pred             ECCCC--------cHHHHHHHHHHHcCCCCEEEE
Confidence            86422        123577788899999999865

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.84  E-value=4.3e-09  Score=110.00  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=79.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC------CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV------KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~------~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.+....+..  .     .++..+......  .+
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~--~-----~i~~~D~l~~~~--~~  200 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--M-----TLLHQDGLANLL--VD  200 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--C-----EEEESCTTSCCC--CC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC--c-----eEEECCCCCccc--cC
Confidence            467999999999999988765431      48999999999999999987654431  1     144444333222  35


Q ss_pred             ceeEEEEccchhhhccCHHH---------------HHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        366 ELDLVSCQFCIHYSFESVQQ---------------ARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d---------------~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +||+|+++-.+++. ...+.               ...++..+.+.|+|||++++.+|+.
T Consensus       201 ~fD~Ii~NPPfg~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          201 PVDVVISDLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CEEEEEEECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CccEEEECCCCCCc-CchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            79999999887764 22211               1268999999999999999998654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.84  E-value=4.9e-09  Score=100.95  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---------CCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---------YED  362 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---------l~~  362 (597)
                      ++.+|||||||+|.++..+++.+ ..|+|+|+++...           .. ..     .++..|+...         +..
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~~-----------~~-~v-----~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEMEE-----------IA-GV-----RFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCCC-----------CT-TC-----EEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccccc-----------CC-Ce-----EEEEccccCHHHHHHHHHHhhc
Confidence            67899999999999999998874 6999999998520           01 11     1333332211         110


Q ss_pred             -CCCceeEEEEccchhhh----c---cCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        363 -KALELDLVSCQFCIHYS----F---ESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       363 -~~~sFDvVi~~~vLh~l----F---es~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                       ..++||+|++.......    +   ........+|+.+.++|||||.|++.+....
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence             00269999996532110    0   1113346789999999999999999887654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.84  E-value=2.2e-09  Score=111.26  Aligned_cols=105  Identities=17%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeC----ChHHHHHHHHHHHhhhhhccccccccceeeh-hhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADI----ASVSIEDCKTRYEELKRKEEARPYRRNVFSA-ELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDi----S~~mIe~A~er~~~~~~~~~~~~~~~d~F~~-dl~e~l~~~~~s  366 (597)
                      ++.+|||||||+|+++..+++.  .+|+|+|+    ++.+++.+.  ....+.. ..     .+... +.. .++  ..+
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~-~v-----~~~~~~D~~-~l~--~~~  148 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWN-LV-----RLQSGVDVF-FIP--PER  148 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGG-GE-----EEECSCCTT-TSC--CCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCC-Ce-----EEEeccccc-cCC--cCC
Confidence            5789999999999999999887  47999999    665442111  0001001 11     02222 222 233  347


Q ss_pred             eeEEEEccchh---hhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        367 LDLVSCQFCIH---YSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       367 FDvVi~~~vLh---~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ||+|+|..+++   +...+ .....+|..+.++|||||.|++.++..
T Consensus       149 fD~V~sd~~~~~g~~~~d~-~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          149 CDTLLCDIGESSPNPTVEA-GRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CSEEEECCCCCCSSHHHHH-HHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCEEEECCccccCcchhhH-HHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            99999987653   22111 111258999999999999999988776

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.83  E-value=6.8e-09  Score=108.58  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.|++++...+.....     .++..|..+.+    ++||+|+
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v-----~~~~~D~~~~~----~~fD~Vi  263 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKI-----IPILSDVREVD----VKGNRVI  263 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTE-----EEEESCGGGCC----CCEEEEE
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-----EEEECChHHhc----CCCcEEE
Confidence            568999999999999998 76 5679999999999999999998877653222     14444443333    4699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYR  418 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~  418 (597)
                      +.... +.       ..++..+.++|+|||+|++.....  ..+...+.
T Consensus       264 ~dpP~-~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~  304 (336)
T 2yx1_A          264 MNLPK-FA-------HKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFE  304 (336)
T ss_dssp             ECCTT-TG-------GGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHH
T ss_pred             ECCcH-hH-------HHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHH
Confidence            86322 11       278999999999999998865444  34444443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.83  E-value=4.9e-09  Score=114.63  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|+.+..++..  +...|+|+|+|+.+++.+++++...+.. ..      +...|.........++||+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~------~~~~Da~~l~~~~~~~FD~  173 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LA------VTQAPPRALAEAFGTYFHR  173 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CE------EECSCHHHHHHHHCSCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EE------EEECCHHHhhhhccccCCE
Confidence            6789999999999999988764  2358999999999999999998876654 21      3333322111111357999


Q ss_pred             EEEc------cchhhhcc-----CH-------HHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQ------FCIHYSFE-----SV-------QQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~------~vLh~lFe-----s~-------~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++.      .+++....     +.       .....+|+++.++|||||+|+.++.
T Consensus       174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9962      11211100     00       1237899999999999999998765

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.82  E-value=3.2e-09  Score=107.78  Aligned_cols=102  Identities=15%  Similarity=0.112  Sum_probs=77.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||.|-++..|... +...|+|+|+++.|++.+++++...+....       +...|+....+.  ++||+|
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~-------~~v~D~~~~~p~--~~~Dva  202 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHR-------TNVADLLEDRLD--EPADVT  202 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEE-------EEECCTTTSCCC--SCCSEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCce-------EEEeeecccCCC--CCcchH
Confidence            4679999999999999988766 457999999999999999999877665422       333444433333  569999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      ++.-++|++ +. +.....+ .+...|+|||.||-
T Consensus       203 L~lkti~~L-e~-q~kg~g~-~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          203 LLLKTLPCL-ET-QQRGSGW-EVIDIVNSPNIVVT  234 (281)
T ss_dssp             EETTCHHHH-HH-HSTTHHH-HHHHHSSCSEEEEE
T ss_pred             HHHHHHHHh-hh-hhhHHHH-HHHHHhCCCCEEEe
Confidence            999999998 21 1222444 89999999988764

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.81  E-value=1.7e-08  Score=103.09  Aligned_cols=102  Identities=17%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.|++.|+++....+.....     .+...|... ++.  .+||+|+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-----~~~~~D~~~-~~~--~~fD~vv   98 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKL-----QVLVGDVLK-TDL--PFFDTCV   98 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGE-----EEEESCTTT-SCC--CCCSEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCce-----EEEEcceec-ccc--hhhcEEE
Confidence            57899999999999999999887 49999999999999999987654321111     133443222 222  2599999


Q ss_pred             EccchhhhccCHHHHHHHH--------------HHH--HHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCML--------------KNA--AECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L--------------~~i--~rlLKPGG~fIi  405 (597)
                      ++..++..   .+-...+|              +++  +++|+|||.++.
T Consensus        99 ~nlpy~~~---~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           99 ANLPYQIS---SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             EECCGGGH---HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             EecCcccc---hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence            98777654   12222333              233  368999998753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.80  E-value=1e-08  Score=111.82  Aligned_cols=111  Identities=15%  Similarity=0.068  Sum_probs=75.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|+.+..++..  +...|+++|+++.+++.+++++...+..+..      +...|.........++||+
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~------v~~~Da~~l~~~~~~~FD~  178 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAI------VTNHAPAELVPHFSGFFDR  178 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEE------EECCCHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceE------EEeCCHHHhhhhccccCCE
Confidence            6789999999999999887764  3358999999999999999998877654321      2333322111111257999


Q ss_pred             EEEccc---hhhhccCH---------------HHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQFC---IHYSFESV---------------QQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~~v---Lh~lFes~---------------~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++.-.   ...+-.+.               .....+|.++.++|||||+|+.++.
T Consensus       179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            997321   11110000               1224789999999999999998765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.80  E-value=1.5e-08  Score=111.30  Aligned_cols=111  Identities=14%  Similarity=0.184  Sum_probs=76.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFD  368 (597)
                      ++.+|||+|||+|+.+..++..  +...|+|+|+|+.+++.+++++...+..+..      +...|... ++. ..++||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~------~~~~D~~~-~~~~~~~~fD  189 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVA------LTHFDGRV-FGAAVPEMFD  189 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEE------EECCCSTT-HHHHSTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEE------EEeCCHHH-hhhhccccCC
Confidence            5789999999999999988764  2358999999999999999998776543211      23333211 111 125699


Q ss_pred             EEEEc------cchhhhcc-----CH-------HHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        369 LVSCQ------FCIHYSFE-----SV-------QQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       369 vVi~~------~vLh~lFe-----s~-------~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +|++.      .+++...+     +.       .....+|+++.++|||||+|+.++..
T Consensus       190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            99982      12221100     01       12357899999999999999998753

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.79  E-value=3.1e-09  Score=107.71  Aligned_cols=99  Identities=12%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh--hh-ccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK--RK-EEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~--~~-~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .+.+|||||||+|..+..+++.+ .+|+++|+++.+++.|++++....  .. .+.     .+...|....+    ++||
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv-----~~~~~D~~~~~----~~fD  141 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNF-----THAKQLLDLDI----KKYD  141 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTE-----EEESSGGGSCC----CCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeE-----EEEechHHHHH----hhCC
Confidence            35799999999999999888776 899999999999999998764321  11 111     12333322222    4699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +|++...         ++..+++.+.++|+|||+|++...+
T Consensus       142 ~Ii~d~~---------dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          142 LIFCLQE---------PDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             EEEESSC---------CCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EEEECCC---------ChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9998621         1224999999999999999997644

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.79  E-value=1.3e-08  Score=109.86  Aligned_cols=110  Identities=18%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDv  369 (597)
                      ++.+|||+|||+|+.+..++.... ..|+|+|+++.+++.++++....+....       +...+...... ...++||+
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~-------~~~~D~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT-------VKQGDGRYPSQWCGEQQFDR  318 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCE-------EEECCTTCTHHHHTTCCEEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeE-------EEeCchhhchhhcccCCCCE
Confidence            678999999999999999887542 5999999999999999999876654311       33333221110 12256999


Q ss_pred             EEEc------cchhhhc-----cCHHH-------HHHHHHHHHHhccCCcEEEEEeC
Q psy17742        370 VSCQ------FCIHYSF-----ESVQQ-------ARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       370 Vi~~------~vLh~lF-----es~~d-------~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |++.      .++++..     .+..+       ...+|+++.++|||||+|++++.
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9962      2232210     00111       25889999999999999999873

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.72  E-value=2.1e-07  Score=100.56  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC---CCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY---EDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l---~~~~~sFD  368 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+..+.      .++..+..+.+   +...++||
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v------~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNV------TFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSE------EEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCce------EEEECCHHHHhhhhhhhcCCCC
Confidence            46799999999999999999875 6999999999999999999876654321      14444433322   22335799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY  417 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l  417 (597)
                      +|++.-....+    .   .+++.+.+ ++|+++++++. ++..+...+
T Consensus       359 ~Vv~dPPr~g~----~---~~~~~l~~-~~p~~ivyvsc-~p~tlard~  398 (433)
T 1uwv_A          359 KVLLDPARAGA----A---GVMQQIIK-LEPIRIVYVSC-NPATLARDS  398 (433)
T ss_dssp             EEEECCCTTCC----H---HHHHHHHH-HCCSEEEEEES-CHHHHHHHH
T ss_pred             EEEECCCCccH----H---HHHHHHHh-cCCCeEEEEEC-ChHHHHhhH
Confidence            99986443222    2   34555443 78988777754 555444433

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.63  E-value=1e-07  Score=103.05  Aligned_cols=109  Identities=20%  Similarity=0.071  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...+..  .     .+...+..+.++.   +||+|+
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v-----~~~~~d~~~~~~~---~fD~Vv  358 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--A-----EFEVASDREVSVK---GFDTVI  358 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--E-----EEEECCTTTCCCT---TCSEEE
T ss_pred             CCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--E-----EEEECChHHcCcc---CCCEEE
Confidence            56899999999999999998875 59999999999999999988765543  1     1444444333322   699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      +......+      ...+++.+. .|+|||++++++ ++..+...+..
T Consensus       359 ~dPPr~g~------~~~~~~~l~-~l~p~givyvsc-~p~tlarDl~~  398 (425)
T 2jjq_A          359 VDPPRAGL------HPRLVKRLN-REKPGVIVYVSC-NPETFARDVKM  398 (425)
T ss_dssp             ECCCTTCS------CHHHHHHHH-HHCCSEEEEEES-CHHHHHHHHHH
T ss_pred             EcCCccch------HHHHHHHHH-hcCCCcEEEEEC-ChHHHHhHHhh
Confidence            96543211      123455554 489999998875 56555555543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.63  E-value=6e-08  Score=102.56  Aligned_cols=110  Identities=7%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCC------
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDK------  363 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~------  363 (597)
                      +.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+..+ ..     ++..+..+   .+...      
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~-v~-----~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDN-VQ-----IIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCS-EE-----EECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eE-----EEECCHHHHHHHHhhccccccc
Confidence            468999999999999988764 4699999999999999999987765432 11     33333111   11111      


Q ss_pred             ------CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        364 ------ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       364 ------~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                            ..+||+|++.-.-.          .+...+.+.|+++|.++....++..+...+..
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~  338 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRS----------GLDSETEKMVQAYPRILYISCNPETLCKNLET  338 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTT----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred             cccccccCCCCEEEECcCcc----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence                  12699998753221          23445667778999999999888776665543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.61  E-value=2.3e-07  Score=95.50  Aligned_cols=78  Identities=23%  Similarity=0.245  Sum_probs=55.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.|++.|+++....+... ..     +...|.. .++.  .+||+|+
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~-v~-----~~~~D~~-~~~~--~~~D~Vv  111 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNN-LE-----VYEGDAI-KTVF--PKFDVCT  111 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCC-EE-----C----CC-SSCC--CCCSEEE
T ss_pred             CcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCc-eE-----EEECchh-hCCc--ccCCEEE
Confidence            56899999999999999998876 599999999999999999876543321 11     2333322 2333  3699999


Q ss_pred             Eccchhhh
Q psy17742        372 CQFCIHYS  379 (597)
Q Consensus       372 ~~~vLh~l  379 (597)
                      ++...+..
T Consensus       112 ~n~py~~~  119 (299)
T 2h1r_A          112 ANIPYKIS  119 (299)
T ss_dssp             EECCGGGH
T ss_pred             EcCCcccc
Confidence            98776553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.59  E-value=1.1e-07  Score=100.96  Aligned_cols=102  Identities=20%  Similarity=0.119  Sum_probs=70.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||+|||+|.++..+++.  ...+++|+|+++.+++.|      ..    .     .++..|.....+  .++||+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~~----~-----~~~~~D~~~~~~--~~~fD~  101 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------PW----A-----EGILADFLLWEP--GEAFDL  101 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------TT----E-----EEEESCGGGCCC--SSCEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------CC----C-----cEEeCChhhcCc--cCCCCE
Confidence            3569999999999999988764  336999999999999877      01    1     144444333222  247999


Q ss_pred             EEEccchhhhcc--------CHH-----------------HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFE--------SVQ-----------------QARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFe--------s~~-----------------d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+++-.+...-.        ..+                 ....+++.+.++|+|||++++.+|+.
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            999632211100        011                 12367999999999999999999874

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.56  E-value=2e-07  Score=99.55  Aligned_cols=115  Identities=11%  Similarity=0.045  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC---------------------------------------CEEEEEeCChHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV---------------------------------------KHVVFADIASVSIEDCK  332 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~---------------------------------------~~V~GIDiS~~mIe~A~  332 (597)
                      ++.+|||+|||+|.+++.++..+.                                       ..|+|+|+++.|++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            567899999999999988765421                                       36999999999999999


Q ss_pred             HHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccC--CcEEEEEeCCh
Q psy17742        333 TRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKP--GGFFVGTVPDS  410 (597)
Q Consensus       333 er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKP--GG~fIit~pn~  410 (597)
                      +++...+......     +...|..+ ++.+ .+||+|+++-.++.-.....++..+++.+.+.||+  ||.+++.+.+.
T Consensus       275 ~Na~~~gl~~~i~-----~~~~D~~~-l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  347 (385)
T 3ldu_A          275 ENAEIAGVDEYIE-----FNVGDATQ-FKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE  347 (385)
T ss_dssp             HHHHHHTCGGGEE-----EEECCGGG-CCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred             HHHHHcCCCCceE-----EEECChhh-cCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence            9988776543221     33444333 3222 47999999766432223345677888888888877  89998888877


Q ss_pred             hHH
Q psy17742        411 NQI  413 (597)
Q Consensus       411 ~~i  413 (597)
                      ...
T Consensus       348 ~l~  350 (385)
T 3ldu_A          348 DFE  350 (385)
T ss_dssp             THH
T ss_pred             HHH
Confidence            644

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.54  E-value=1.3e-07  Score=102.32  Aligned_cols=112  Identities=14%  Similarity=0.063  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--------------CCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--------------GVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAEL  356 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--------------g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl  356 (597)
                      ++.+|||.|||+|+++..+++.              ....++|+|+++.++..|+.++...+... ..     .+...+.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~-----~i~~gD~  245 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS-----PIVCEDS  245 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC-----SEEECCT
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC-----CEeeCCC
Confidence            5678999999999999876642              12479999999999999998776544321 11     1334432


Q ss_pred             hccCCCCCCceeEEEEccchhhhccC-------------HHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        357 RSQYEDKALELDLVSCQFCIHYSFES-------------VQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       357 ~e~l~~~~~sFDvVi~~~vLh~lFes-------------~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .....  ..+||+|+++-.++.....             ......+++.+.++|||||++++.+|+.
T Consensus       246 l~~~~--~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          246 LEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             TTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCcc--cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence            22111  1369999998665543110             0112478999999999999999988764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.52  E-value=2.3e-07  Score=98.87  Aligned_cols=104  Identities=17%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhh---------------hhhccccccccceeehhh
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEEL---------------KRKEEARPYRRNVFSAEL  356 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~---------------~~~~~~~~~~~d~F~~dl  356 (597)
                      +.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++...+               +... .     .+...|.
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i-----~v~~~Da  121 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-I-----VINHDDA  121 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-E-----EEEESCH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-e-----EEEcCcH
Confidence            679999999999999998876 5568999999999999999998766               3321 1     1344442


Q ss_pred             hccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        357 RSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       357 ~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ...+....++||+|++.- ..       ....++..+.+.|||||+++++..+.
T Consensus       122 ~~~~~~~~~~fD~I~lDP-~~-------~~~~~l~~a~~~lk~gG~l~vt~td~  167 (378)
T 2dul_A          122 NRLMAERHRYFHFIDLDP-FG-------SPMEFLDTALRSAKRRGILGVTATDG  167 (378)
T ss_dssp             HHHHHHSTTCEEEEEECC-SS-------CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             HHHHHhccCCCCEEEeCC-CC-------CHHHHHHHHHHhcCCCCEEEEEeecc
Confidence            222111124699999642 21       12478899999999999999887544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.52  E-value=5.8e-07  Score=95.98  Aligned_cols=115  Identities=10%  Similarity=0.028  Sum_probs=84.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC---------------------------------------CEEEEEeCChHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV---------------------------------------KHVVFADIASVSIEDCK  332 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~---------------------------------------~~V~GIDiS~~mIe~A~  332 (597)
                      ++..|||.+||+|.+++.++..+.                                       ..|+|+|+++.|++.|+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            567899999999999988664321                                       35999999999999999


Q ss_pred             HHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccC--CcEEEEEeCCh
Q psy17742        333 TRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKP--GGFFVGTVPDS  410 (597)
Q Consensus       333 er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKP--GG~fIit~pn~  410 (597)
                      ++....+......     +...|..+ ++.. .+||+|+++-.++.-.....+...+++.+.+.||+  ||.+++.+++.
T Consensus       274 ~Na~~~gl~~~I~-----~~~~D~~~-l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  346 (384)
T 3ldg_A          274 KNAREVGLEDVVK-----LKQMRLQD-FKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT  346 (384)
T ss_dssp             HHHHHTTCTTTEE-----EEECCGGG-CCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred             HHHHHcCCCCceE-----EEECChHH-CCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence            9988776543221     33444332 3222 37999999855443335567788888888888887  99999999888


Q ss_pred             hHH
Q psy17742        411 NQI  413 (597)
Q Consensus       411 ~~i  413 (597)
                      +..
T Consensus       347 ~l~  349 (384)
T 3ldg_A          347 DFE  349 (384)
T ss_dssp             THH
T ss_pred             HHH
Confidence            644

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.51  E-value=8e-07  Score=94.66  Aligned_cols=175  Identities=15%  Similarity=0.196  Sum_probs=102.2

Q ss_pred             CCCEEEEECCCCChhHHHHHh------------c----CCCEEEEEeCChHHHHHHHHHHHhhhhhc-----cccccccc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN------------G----GVKHVVFADIASVSIEDCKTRYEELKRKE-----EARPYRRN  350 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~------------~----g~~~V~GIDiS~~mIe~A~er~~~~~~~~-----~~~~~~~d  350 (597)
                      ...+|+|+|||+|..+..+..            .    .--+|+.-|+..+.....-+.+.......     ......+.
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            368999999999998776521            1    12378888988877655554443321100     00000011


Q ss_pred             eeehh-----hhccCCCCCCceeEEEEccchhhhccCH----------------------------------HHHHHHHH
Q psy17742        351 VFSAE-----LRSQYEDKALELDLVSCQFCIHYSFESV----------------------------------QQARCMLK  391 (597)
Q Consensus       351 ~F~~d-----l~e~l~~~~~sFDvVi~~~vLh~lFes~----------------------------------~d~~~~L~  391 (597)
                      .|...     ....+|  .++||+|+++.+|||+-...                                  .|+..+|+
T Consensus       132 ~f~~gvpgSFy~rlfP--~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFP--ARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             SEEEEEESCTTSCCSC--TTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCC--CcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33322     112233  46799999999999972111                                  27788999


Q ss_pred             HHHHhccCCcEEEEEeCChhH-----------HH-HHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccc
Q psy17742        392 NAAECLKPGGFFVGTVPDSNQ-----------IM-ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNC  459 (597)
Q Consensus       392 ~i~rlLKPGG~fIit~pn~~~-----------i~-~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~  459 (597)
                      ..++.|+|||.|++++.....           ++ ..+...-.....             ++.. -..+     -+..++
T Consensus       210 ~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~-------------eG~i-~~e~-----~d~f~~  270 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVR-------------EGLV-AAEK-----RDGFNI  270 (374)
T ss_dssp             HHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTS-------------SSSS-CHHH-----HSSCCC
T ss_pred             HHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHH-------------hCCc-chhh-----cccCCc
Confidence            999999999999999874411           11 111110000000             0000 0000     012357


Q ss_pred             cccCCCHHHHHHHHH-HcCCeEEEEEecH
Q psy17742        460 PEFLVYFPLLERIAG-EFGLKRILKENFR  487 (597)
Q Consensus       460 pEYlv~~e~L~~La~-eaGfelV~~~~F~  487 (597)
                      |-|..+.++++.+++ +.||++.....|.
T Consensus       271 P~y~ps~~E~~~~l~~~~~F~I~~le~~~  299 (374)
T 3b5i_A          271 PVYAPSLQDFKEVVDANGSFAIDKLVVYK  299 (374)
T ss_dssp             CBCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred             cccCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence            888999999999997 6999998776653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.51  E-value=3.7e-07  Score=97.75  Aligned_cols=115  Identities=13%  Similarity=-0.009  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC---------------------------------------CEEEEEeCChHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV---------------------------------------KHVVFADIASVSIEDCK  332 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~---------------------------------------~~V~GIDiS~~mIe~A~  332 (597)
                      ++..|||.+||+|.+++.++..+.                                       ..|+|+|+++.|++.|+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            467899999999999988664321                                       35999999999999999


Q ss_pred             HHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccC--CcEEEEEeCCh
Q psy17742        333 TRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKP--GGFFVGTVPDS  410 (597)
Q Consensus       333 er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKP--GG~fIit~pn~  410 (597)
                      +++...+......     +...|..+ ++.. .+||+|+++-.++.-.....+...+.+.+.+.||+  ||.+++.+.+.
T Consensus       281 ~Na~~~gl~~~I~-----~~~~D~~~-~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          281 QNAVEAGLGDLIT-----FRQLQVAD-FQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHTTCTTCSE-----EEECCGGG-CCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHcCCCCceE-----EEECChHh-CCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            9988776543221     33444333 2222 47999999844322112335666777777777776  99999988887


Q ss_pred             hHH
Q psy17742        411 NQI  413 (597)
Q Consensus       411 ~~i  413 (597)
                      ...
T Consensus       354 ~l~  356 (393)
T 3k0b_A          354 LFE  356 (393)
T ss_dssp             THH
T ss_pred             HHH
Confidence            643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.50  E-value=1.6e-07  Score=100.63  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhcc-ccccccceeehhhhccCC-CCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEE-ARPYRRNVFSAELRSQYE-DKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~-~~~~~~d~F~~dl~e~l~-~~~~sF  367 (597)
                      ++.+|||++||+|..+..++..  |..+|+++|+++.+++.+++++..++...+ ..     ++..|....+. ...++|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~-----v~~~Da~~~l~~~~~~~f  126 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYE-----IHGMEANFFLRKEWGFGF  126 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEE-----EECSCHHHHHHSCCSSCE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEE-----EEeCCHHHHHHHhhCCCC
Confidence            4689999999999999998874  456899999999999999999887776442 22     34444222221 112469


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      |+|++.- .    .   ....++..+.++|+|||+|+++..+..
T Consensus       127 D~V~lDP-~----g---~~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          127 DYVDLDP-F----G---TPVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             EEEEECC-S----S---CCHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             cEEEECC-C----c---CHHHHHHHHHHHhCCCCEEEEEecchh
Confidence            9999864 1    1   123588899999999999999885544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.43  E-value=6.8e-07  Score=92.08  Aligned_cols=106  Identities=11%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             CCCCEEEEECCCC------ChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccce-eehhhhccCCC
Q psy17742        291 GSPIKVLDMGSGK------GGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV-FSAELRSQYED  362 (597)
Q Consensus       291 ~~~~rVLDLGCGt------G~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~-F~~dl~e~l~~  362 (597)
                      .++.+|||||||+      |. .......+ ..+|+|+|+|+. +            . ..     .+ +..|+.. ++.
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-v------------~-~v-----~~~i~gD~~~-~~~  120 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-V------------S-DA-----DSTLIGDCAT-VHT  120 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-B------------C-SS-----SEEEESCGGG-CCC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-C------------C-CC-----EEEEECcccc-CCc
Confidence            3678999999954      65 22222223 258999999998 1            1 11     14 4555433 222


Q ss_pred             CCCceeEEEEccchhhh----c---cCHHHHHHHHHHHHHhccCCcEEEEEeCCh---hHHHHHHh
Q psy17742        363 KALELDLVSCQFCIHYS----F---ESVQQARCMLKNAAECLKPGGFFVGTVPDS---NQIMARYR  418 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~l----F---es~~d~~~~L~~i~rlLKPGG~fIit~pn~---~~i~~~l~  418 (597)
                      . ++||+|++....+..    +   .+......+|+.+.++|||||+|++.+...   ..+...++
T Consensus       121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~  185 (290)
T 2xyq_A          121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMG  185 (290)
T ss_dssp             S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHT
T ss_pred             c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHH
Confidence            2 469999997543210    0   112345689999999999999999977443   45555444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.43  E-value=1.7e-06  Score=89.63  Aligned_cols=111  Identities=8%  Similarity=-0.036  Sum_probs=71.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC--CCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED--KALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~--~~~sF  367 (597)
                      ++.+|||+|||+|+.+..++..  +...|+++|+++.+++.+++++...+..+..      +...|.......  ...+|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~------~~~~D~~~~~~~~~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCE------LAEEDFLAVSPSDPRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEECCGGGSCTTCGGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE------EEeCChHhcCccccccCCC
Confidence            6789999999999999988763  3358999999999999999998876653211      333332221111  01469


Q ss_pred             eEEEEc------cchhhhc----------cCHH----HHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        368 DLVSCQ------FCIHYSF----------ESVQ----QARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       368 DvVi~~------~vLh~lF----------es~~----d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |+|++-      .++....          +...    ....+|..+.++|+ ||+|+.++..
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            999972      1121100          0101    12357888888887 9999987643

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.42  E-value=1e-06  Score=87.85  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=40.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++...
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~   74 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD   74 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc
Confidence            57899999999999999999887 6999999999999999988753

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.38  E-value=3.2e-08  Score=98.37  Aligned_cols=102  Identities=15%  Similarity=0.095  Sum_probs=65.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sFDvV  370 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|+++....   ...     .+...|.. .++.. .++| .|
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~---~~v-----~~~~~D~~-~~~~~~~~~f-~v   97 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN---TRV-----TLIHQDIL-QFQFPNKQRY-KI   97 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC---SEE-----EECCSCCT-TTTCCCSSEE-EE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccC---Cce-----EEEECChh-hcCcccCCCc-EE
Confidence            56799999999999999998887 69999999999999988765411   111     13333322 22222 2468 66


Q ss_pred             EEccchhhhccCHHHHH----------HHH----HHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQAR----------CML----KNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~----------~~L----~~i~rlLKPGG~fIit~  407 (597)
                      +++...+.   +.....          .++    +.+.++|+|||.|++.+
T Consensus        98 v~n~Py~~---~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           98 VGNIPYHL---STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEECCSSS---CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEeCCccc---cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            66533221   111122          223    66888999998776643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.35  E-value=5.2e-07  Score=91.17  Aligned_cols=81  Identities=15%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCCh-------HHHHHHHHHHHhhhhhccccccccceeehhhhcc---CC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIAS-------VSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~-------~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~  361 (597)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+++       .+++.|+++....+...+..     ++..+..+.   ++
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~-----~~~~d~~~~l~~~~  156 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARIN-----LHFGNAAEQMPALV  156 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEE-----EEESCHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeE-----EEECCHHHHHHhhh
Confidence            45789999999999999999877 4899999999       99999988765554433221     444443322   22


Q ss_pred             CCCCceeEEEEccchhh
Q psy17742        362 DKALELDLVSCQFCIHY  378 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~  378 (597)
                      ...++||+|++.-.+++
T Consensus       157 ~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          157 KTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHCCCSEEEECCCC--
T ss_pred             ccCCCccEEEECCCCCC
Confidence            10036999999765544

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.33  E-value=2.7e-06  Score=90.88  Aligned_cols=161  Identities=16%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             CCEEEEECCCCChhHHHHHhc------------------CCCEEEEEeCC-----------hHHHHHHHHHHHhhhhhcc
Q psy17742        293 PIKVLDMGSGKGGDMLKWING------------------GVKHVVFADIA-----------SVSIEDCKTRYEELKRKEE  343 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~------------------g~~~V~GIDiS-----------~~mIe~A~er~~~~~~~~~  343 (597)
                      ..+|+|+|||+|..+..+...                  .--+|+..|+.           +.+.+.+++.   .+... 
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~-  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKI-  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCT-
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCC-
Confidence            578999999999988765432                  11368888988           3333322111   11000 


Q ss_pred             ccccccceeehhh-----hccCCCCCCceeEEEEccchhhhccCH-----------------------------------
Q psy17742        344 ARPYRRNVFSAEL-----RSQYEDKALELDLVSCQFCIHYSFESV-----------------------------------  383 (597)
Q Consensus       344 ~~~~~~d~F~~dl-----~e~l~~~~~sFDvVi~~~vLh~lFes~-----------------------------------  383 (597)
                           +.+|...+     ...+|  .++||+|+++++|||+-...                                   
T Consensus       129 -----~~~f~~gvpgSFy~rlfp--~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~  201 (384)
T 2efj_A          129 -----GSCLIGAMPGSFYSRLFP--EESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFT  201 (384)
T ss_dssp             -----TSEEEEECCSCTTSCCSC--TTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHH
T ss_pred             -----CceEEEecchhhhhccCC--CCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHH
Confidence                 11343321     12333  46799999999999972211                                   


Q ss_pred             HHHHHHHHHHHHhccCCcEEEEEeCChh----------HHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeec
Q psy17742        384 QQARCMLKNAAECLKPGGFFVGTVPDSN----------QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNL  453 (597)
Q Consensus       384 ~d~~~~L~~i~rlLKPGG~fIit~pn~~----------~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L  453 (597)
                      .|+..+|+..++.|+|||.+++++....          .+..-+...-..  |               .. -..++    
T Consensus       202 ~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~e--G---------------li-~~ek~----  259 (384)
T 2efj_A          202 KDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE--G---------------HL-EEEKL----  259 (384)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHH--T---------------SS-CHHHH----
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHh--C---------------Cc-chhhh----
Confidence            2345568889999999999999986542          222222110000  0               00 00000    


Q ss_pred             cccccccccCCCHHHHHHHHHHcC-CeEEEEEecH
Q psy17742        454 EGVVNCPEFLVYFPLLERIAGEFG-LKRILKENFR  487 (597)
Q Consensus       454 ~d~Vn~pEYlv~~e~L~~La~eaG-felV~~~~F~  487 (597)
                       +..+.|-|..+.++++.++++.| |++.....|.
T Consensus       260 -dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~  293 (384)
T 2efj_A          260 -DSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFN  293 (384)
T ss_dssp             -HTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred             -cccCCcccCCCHHHHHHHHHHcCCceEEEEEEEe
Confidence             12356788899999999999884 7888766553

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.32  E-value=3.7e-06  Score=86.73  Aligned_cols=77  Identities=16%  Similarity=0.129  Sum_probs=56.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++....  . .     .+...|... ++....+||+|+
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~--~-v-----~vi~gD~l~-~~~~~~~fD~Iv  119 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYN--N-I-----EIIWGDALK-VDLNKLDFNKVV  119 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCS--S-E-----EEEESCTTT-SCGGGSCCSEEE
T ss_pred             CcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCC--C-e-----EEEECchhh-CCcccCCccEEE
Confidence            57899999999999999998876 599999999999999999876321  1 1     134444222 222224699999


Q ss_pred             Eccchhh
Q psy17742        372 CQFCIHY  378 (597)
Q Consensus       372 ~~~vLh~  378 (597)
                      ++..++.
T Consensus       120 ~NlPy~i  126 (295)
T 3gru_A          120 ANLPYQI  126 (295)
T ss_dssp             EECCGGG
T ss_pred             EeCcccc
Confidence            9876654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.30  E-value=9.7e-07  Score=98.26  Aligned_cols=118  Identities=12%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----C---------------CCEEEEEeCChHHHHHHHHHHHhhhhhcccccccccee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----G---------------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF  352 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g---------------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F  352 (597)
                      ++.+|||.|||+|.++..+.+.    +               ...++|+|+++.++..|+.++.-.+...... ....+.
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~-~~~~I~  247 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD-HGGAIR  247 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGG-GTBSEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcccc-ccCCeE
Confidence            5679999999999998776532    1               1379999999999999998765443321000 000133


Q ss_pred             ehhhhccCCCCCCceeEEEEccchhhhcc----------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        353 SAELRSQYEDKALELDLVSCQFCIHYSFE----------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       353 ~~dl~e~l~~~~~sFDvVi~~~vLh~lFe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ..+.........++||+|+++-.+.....          .......++..+.++|||||++.+.+|+.
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            33311111111246999999865543211          01123478999999999999999998866

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.26  E-value=1.2e-06  Score=92.67  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=102.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc------------C-----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING------------G-----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA  354 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~------------g-----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~  354 (597)
                      ...+|+|+||++|..+..+...            +     --+|+..|+..+....+-+.+.......      +.+|..
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~------~~~f~~  124 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVD------GVCFIN  124 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCT------TCEEEE
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccC------CCEEEE
Confidence            3578999999999866543221            1     1378999999999888877655421100      113333


Q ss_pred             hh-----hccCCCCCCceeEEEEccchhhhccC-----------------------------HHHHHHHHHHHHHhccCC
Q psy17742        355 EL-----RSQYEDKALELDLVSCQFCIHYSFES-----------------------------VQQARCMLKNAAECLKPG  400 (597)
Q Consensus       355 dl-----~e~l~~~~~sFDvVi~~~vLh~lFes-----------------------------~~d~~~~L~~i~rlLKPG  400 (597)
                      .+     ...+|  .+++|+|+++++|||+-.-                             ..|+..+|+..++.|+||
T Consensus       125 gvpgSFy~rlfp--~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG  202 (359)
T 1m6e_X          125 GVPGSFYGRLFP--RNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG  202 (359)
T ss_dssp             EEESCSSSCCSC--TTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred             ecchhhhhccCC--CCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            21     12333  4679999999999997210                             246778899999999999


Q ss_pred             cEEEEEeCChhH----------HHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHH
Q psy17742        401 GFFVGTVPDSNQ----------IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLE  470 (597)
Q Consensus       401 G~fIit~pn~~~----------i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~  470 (597)
                      |.+++++.....          ++..+...    |. .     .-.   ++.. -..+     -+..+.|-|..+.++++
T Consensus       203 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~a----l~-~-----mv~---eGli-~~ek-----~d~f~~P~y~ps~~E~~  263 (359)
T 1m6e_X          203 GRMVLTILGRRSEDRASTECCLIWQLLAMA----LN-Q-----MVS---EGLI-EEEK-----MDKFNIPQYTPSPTEVE  263 (359)
T ss_dssp             CEEEEEEEECSSSSSSSTTTSTTTHHHHHH----HH-H-----HHH---TTCS-CCST-----TGGGCCCCBCCCSHHHH
T ss_pred             ceEEEEEecCCCCCccccchHHHHHHHHHH----HH-H-----HHH---cccc-chhh-----hhccCCCccCCCHHHHH
Confidence            999999864311          11111110    00 0     000   0000 0000     02346788999999999


Q ss_pred             HHHHHcCC-eEEEEEec
Q psy17742        471 RIAGEFGL-KRILKENF  486 (597)
Q Consensus       471 ~La~eaGf-elV~~~~F  486 (597)
                      .++++.|+ ++...+.|
T Consensus       264 ~~ie~~G~F~i~~~e~~  280 (359)
T 1m6e_X          264 AEILKEGSFLIDHIEAS  280 (359)
T ss_dssp             HHHHHTTTBCCEEEEEE
T ss_pred             HHHHHcCCceEEEEEEE
Confidence            99999965 76665544

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.20  E-value=1.3e-06  Score=88.91  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|+++..++.. +...++|+|++..+....... ...+. ..      ..+..+. +......++||+|
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~i------i~~~~~~-dv~~l~~~~~DlV  144 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NI------ITFKDKT-DIHRLEPVKCDTL  144 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GG------EEEECSC-CTTTSCCCCCSEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-Ce------EEEeccc-eehhcCCCCccEE
Confidence            6779999999999999987764 556789999985431000000 00000 00      0222221 1122234579999


Q ss_pred             EEccchh----hhccCHHHHHHHHHHHHHhccCC-cEEEEEeCC
Q psy17742        371 SCQFCIH----YSFESVQQARCMLKNAAECLKPG-GFFVGTVPD  409 (597)
Q Consensus       371 i~~~vLh----~lFes~~d~~~~L~~i~rlLKPG-G~fIit~pn  409 (597)
                      +|-.+.+    ++ ++ .....+|+.+.++|+|| |.|++.+..
T Consensus       145 lsD~apnsG~~~~-D~-~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          145 LCDIGESSSSSVT-EG-ERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EECCCCCCSCHHH-HH-HHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EecCccCcCchHH-HH-HHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            9987665    33 11 11124588899999999 999999998

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.20  E-value=9.9e-06  Score=81.71  Aligned_cols=45  Identities=11%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++..
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~   73 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ   73 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT
T ss_pred             CcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh
Confidence            57899999999999999999887 6999999999999999998764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.16  E-value=7.7e-06  Score=93.74  Aligned_cols=117  Identities=10%  Similarity=-0.078  Sum_probs=77.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-------------------------------------------CCEEEEEeCChHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-------------------------------------------VKHVVFADIASVSI  328 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-------------------------------------------~~~V~GIDiS~~mI  328 (597)
                      ++..|||.+||+|.+++..+..+                                           ...++|+|+++.|+
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            46789999999999998765421                                           13799999999999


Q ss_pred             HHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCceeEEEEccchhhhccCHHHHHHHHHHHH---HhccCCcEEE
Q psy17742        329 EDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELDLVSCQFCIHYSFESVQQARCMLKNAA---ECLKPGGFFV  404 (597)
Q Consensus       329 e~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~---rlLKPGG~fI  404 (597)
                      +.|+.++...+......     +...+..+.. +...++||+|+++--+..-.....+...+.+.+.   +.+.|||.++
T Consensus       270 ~~A~~N~~~agv~~~i~-----~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~  344 (703)
T 3v97_A          270 QRARTNARLAGIGELIT-----FEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS  344 (703)
T ss_dssp             HHHHHHHHHTTCGGGEE-----EEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHHHHcCCCCceE-----EEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence            99999988877654321     3344433221 2222369999998443221123345555555544   4456899999


Q ss_pred             EEeCChhHH
Q psy17742        405 GTVPDSNQI  413 (597)
Q Consensus       405 it~pn~~~i  413 (597)
                      +.+++....
T Consensus       345 ilt~~~~l~  353 (703)
T 3v97_A          345 LFSASPDLL  353 (703)
T ss_dssp             EEESCHHHH
T ss_pred             EEeCCHHHH
Confidence            999988654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.15  E-value=1.3e-05  Score=81.61  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~~~~sFDvV  370 (597)
                      ++ +|||||||+|.++..++..+ .+|+|+|+++.|++.+++++...    +..     +...|... .++.. ..+|.|
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~----~v~-----vi~~D~l~~~~~~~-~~~~~i  114 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGL----PVR-----LVFQDALLYPWEEV-PQGSLL  114 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTS----SEE-----EEESCGGGSCGGGS-CTTEEE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCC----CEE-----EEECChhhCChhhc-cCccEE
Confidence            56 99999999999999999887 58999999999999999987631    111     33343221 22211 248999


Q ss_pred             EEccchhh
Q psy17742        371 SCQFCIHY  378 (597)
Q Consensus       371 i~~~vLh~  378 (597)
                      +++...+-
T Consensus       115 v~NlPy~i  122 (271)
T 3fut_A          115 VANLPYHI  122 (271)
T ss_dssp             EEEECSSC
T ss_pred             EecCcccc
Confidence            98866543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.12  E-value=5.7e-06  Score=92.15  Aligned_cols=112  Identities=12%  Similarity=-0.039  Sum_probs=73.0

Q ss_pred             CEEEEECCCCChhHHHHHhc--------C--------CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh
Q psy17742        294 IKVLDMGSGKGGDMLKWING--------G--------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR  357 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~--------g--------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~  357 (597)
                      .+|||.|||+|+++..+.+.        +        ...++|+|+++.++..|+.++.-.+......     +...+..
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~-----i~~gDtL  320 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFG-----KKNADSF  320 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCC-----SSSCCTT
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccc-----eeccchh
Confidence            49999999999988775321        0        2479999999999999998876554332110     1222211


Q ss_pred             ccCCCCCCceeEEEEccchhh-------------------------hccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        358 SQYEDKALELDLVSCQFCIHY-------------------------SFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       358 e~l~~~~~sFDvVi~~~vLh~-------------------------lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ..-.....+||+|+++-.+..                         +......-..++..+.+.|+|||++.+.+|+.
T Consensus       321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            111112357999999744332                         00000111268999999999999999999876

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.11  E-value=1.3e-05  Score=89.33  Aligned_cols=115  Identities=12%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCC-CCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYE-DKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~-~~~~  365 (597)
                      ++.+|||.|||+|+++..+.+.    +...++|+|+++.++..|+.++.-.+.....    ..+...+ +...++ ....
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~----~~I~~gDtL~~d~p~~~~~  296 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIEN----QFLHNADTLDEDWPTQEPT  296 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGG----EEEEESCTTTSCSCCSSCC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCc----cceEecceecccccccccc
Confidence            5789999999999998876654    2358999999999999999876554432100    0133333 222222 2235


Q ss_pred             ceeEEEEccchhhhcc-------------------CHHHHHHHHHHHHHhcc-CCcEEEEEeCCh
Q psy17742        366 ELDLVSCQFCIHYSFE-------------------SVQQARCMLKNAAECLK-PGGFFVGTVPDS  410 (597)
Q Consensus       366 sFDvVi~~~vLh~lFe-------------------s~~d~~~~L~~i~rlLK-PGG~fIit~pn~  410 (597)
                      +||+|+++-.+..-+.                   ....-..++..+.+.|+ |||++.+.+|+.
T Consensus       297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            7999999733221110                   00001258999999999 999999999887

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.09  E-value=1.5e-05  Score=91.75  Aligned_cols=118  Identities=13%  Similarity=0.088  Sum_probs=73.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC----CCEEEEEeCChHHHHHHHHHHHhhh--hhccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG----VKHVVFADIASVSIEDCKTRYEELK--RKEEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g----~~~V~GIDiS~~mIe~A~er~~~~~--~~~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||.|||+|.++..++...    ...++|+|+++.+++.|+.+.....  ......  ...+...++...-....+
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~--~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNN--APTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTB--CCEEECCCGGGCCGGGGT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCC--cceEEecchhcccccccC
Confidence            46799999999999999877643    2479999999999999954432211  110000  000112222221111235


Q ss_pred             ceeEEEEccchhhhccCH-------------------------HHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        366 ELDLVSCQFCIHYSFESV-------------------------QQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~-------------------------~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +||+|+++--+.......                         .-...++..+.++|+|||++.+.+|+.-
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence            799999975441100000                         1134578899999999999999999874

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.05  E-value=1e-05  Score=91.52  Aligned_cols=103  Identities=12%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc---CCC--EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING---GVK--HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~---g~~--~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ....|||+|||+|.+....+++   +..  +|++||-|+ |...|++....++...+.+     ++..++. .+..+ ++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVt-----VI~gd~e-ev~LP-EK  428 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVT-----VVSSDMR-EWVAP-EK  428 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEE-----EEESCTT-TCCCS-SC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEE-----EEeCcce-eccCC-cc
Confidence            4568999999999985554333   222  689999997 5667777766666655442     4444433 33322 47


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      +|+|++=.. .+....+ .+..+|....+.|||||.++
T Consensus       429 VDIIVSEwM-G~fLl~E-~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          429 ADIIVSELL-GSFADNE-LSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEEECCCC-BTTBGGG-CHHHHHHHHGGGEEEEEEEE
T ss_pred             cCEEEEEcC-ccccccc-CCHHHHHHHHHhcCCCcEEc
Confidence            999998432 2221122 23367888899999999874

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.02  E-value=1.4e-05  Score=82.45  Aligned_cols=111  Identities=16%  Similarity=0.289  Sum_probs=76.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+||=||.|.|+.+..+++. +..+|+.+||++.+++.|++.+..........+. ......|....+....++||+|
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpR-v~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPR-FKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTT-EEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCc-EEEEechHHHHHhhccccCCEE
Confidence            4689999999999999998876 4679999999999999999987553221100000 0133444334444455689999


Q ss_pred             EEccch-----hhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCI-----HYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vL-----h~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +.-..=     ..+|     -..+++.++++|+|||+++....
T Consensus       162 i~D~~dp~~~~~~L~-----t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          162 ISDCTDPIGPGESLF-----TSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EESCCCCCCTTCCSS-----CCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhc-----CHHHHHHHHHHhCCCCEEEEecC
Confidence            974321     1111     14689999999999999998653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.02  E-value=3.7e-06  Score=90.49  Aligned_cols=75  Identities=15%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh--hhhccccccccceeehhhhccCCC-CCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL--KRKEEARPYRRNVFSAELRSQYED-KALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~--~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFD  368 (597)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|++++...  +.. +.     .++..|..+.++. ..++||
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-~i-----~~i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGK-DV-----NILTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTC-EE-----EEEESCGGGSHHHHHHHCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCC-cE-----EEEECcHHHhhhhccCCCce
Confidence            36899999999999999888776 59999999999999999998765  442 11     1444443332221 113699


Q ss_pred             EEEEc
Q psy17742        369 LVSCQ  373 (597)
Q Consensus       369 vVi~~  373 (597)
                      +|++.
T Consensus       166 vV~lD  170 (410)
T 3ll7_A          166 YIYVD  170 (410)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99995

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.00  E-value=6.6e-06  Score=85.07  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      ++.+|||+|||+|+++..++... ..+|+|+|+|+.|++.|+++....+
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g   74 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS   74 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            57899999999999999988763 3599999999999999999887654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.98  E-value=3.8e-06  Score=85.73  Aligned_cols=106  Identities=23%  Similarity=0.175  Sum_probs=66.8

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||.|+++..++. .+...|+|+|++..+...+... ...+...       ..+..+ ....++  ..++|+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~~i-------i~~~~~~dv~~l~--~~~~Dv  159 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGWNL-------IRFKDKTDVFNME--VIPGDT  159 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTGGG-------EEEECSCCGGGSC--CCCCSE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCCce-------EEeeCCcchhhcC--CCCcCE
Confidence            667999999999999998774 4666899999987642222100 0000000       012211 111232  357999


Q ss_pred             EEEccchh----hhccCHHHHHHHHHHHHHhccCC--cEEEEEeCC
Q psy17742        370 VSCQFCIH----YSFESVQQARCMLKNAAECLKPG--GFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh----~lFes~~d~~~~L~~i~rlLKPG--G~fIit~pn  409 (597)
                      |+|-.+.+    .+ ++ .....+|.-+.++|+||  |.|++-+..
T Consensus       160 VLSDmApnsG~~~~-D~-~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          160 LLCDIGESSPSIAV-EE-QRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             EEECCCCCCSCHHH-HH-HHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             EEecCccCCCChHH-HH-HHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            99987765    22 11 11224588888999999  999999998

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.95  E-value=2.2e-05  Score=78.79  Aligned_cols=43  Identities=16%  Similarity=0.269  Sum_probs=39.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTR  334 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er  334 (597)
                      ++.+|||||||+|.++..++..+..+|+|+|+++.|++.++++
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc
Confidence            5789999999999999999988657999999999999999876

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.93  E-value=6.4e-05  Score=76.76  Aligned_cols=43  Identities=14%  Similarity=0.167  Sum_probs=38.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCE----EEEEeCChHHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKH----VVFADIASVSIEDCKTRY  335 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~----V~GIDiS~~mIe~A~er~  335 (597)
                      ++.+|||||||+|.++..++..+. .    |+|+|+++.|++.++++.
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~   88 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF   88 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH
T ss_pred             CcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc
Confidence            578999999999999999987763 4    999999999999999883

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.85  E-value=1e-05  Score=81.94  Aligned_cols=111  Identities=14%  Similarity=0.114  Sum_probs=65.9

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh--------hhccccccccceeehhhhccCCCCCC
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK--------RKEEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~--------~~~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      .+|||+|||.|.++..++..|. +|+++|+++.++..+++......        ...+.     .++..+....++....
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i-----~~~~~D~~~~L~~~~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-----QLIHASSLTALTDITP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE-----EEEESCHHHHSTTCSS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCE-----EEEECCHHHHHHhCcc
Confidence            7899999999999999998875 89999999998777666543321        11111     1444443333332123


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      +||+|++.-.+++-  .   ...++++..+.|++.|   ...++.+.+...+.
T Consensus       164 ~fDvV~lDP~y~~~--~---~saavkk~~~~lr~l~---~~~~~~~~ll~~a~  208 (258)
T 2oyr_A          164 RPQVVYLDPMFPHK--Q---KSALVKKEMRVFQSLV---GPDLDADGLLEPAR  208 (258)
T ss_dssp             CCSEEEECCCCCCC--C---C-----HHHHHHHHHS---CCCTTGGGGHHHHH
T ss_pred             cCCEEEEcCCCCCc--c---cchHHHHHHHHHHHhh---cCCccHHHHHHHHH
Confidence            59999997666542  1   1144555555665543   12455555554443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.84  E-value=8.7e-05  Score=72.53  Aligned_cols=103  Identities=14%  Similarity=-0.014  Sum_probs=64.6

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhh--hccccccccceeehh---------hhccCC
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKR--KEEARPYRRNVFSAE---------LRSQYE  361 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~--~~~~~~~~~d~F~~d---------l~e~l~  361 (597)
                      ..+|||+|||  .-+..++.....+|+.+|.++...+.|++.+...+.  ..+.....++.....         -.+.++
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            5789999985  555555554236999999999999999999887664  322221111111100         000011


Q ss_pred             --------C-CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        362 --------D-KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       362 --------~-~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                              . ..++||+|+.-...         ....+..+.++|+|||++++.
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEET
T ss_pred             HHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEe
Confidence                    1 13579999886532         124555677999999999774

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.68  E-value=4e-05  Score=78.75  Aligned_cols=107  Identities=18%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+||||||++|+++..+++. +...|+|+|+...+...... ........       ..+..+ .+.+....+++|+|
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~i-------v~~~~~-~di~~l~~~~~DlV  151 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNI-------VKFKDK-SNVFTMPTEPSDTL  151 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGG-------EEEECS-CCTTTSCCCCCSEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCce-------EEeecC-ceeeecCCCCcCEE
Confidence            6789999999999999999864 66689999997643110000 00000000       011111 01112223579999


Q ss_pred             EEccchh----hhccCHHHHHHHHHHHHHhccCC-cEEEEEeCC
Q psy17742        371 SCQFCIH----YSFESVQQARCMLKNAAECLKPG-GFFVGTVPD  409 (597)
Q Consensus       371 i~~~vLh----~lFes~~d~~~~L~~i~rlLKPG-G~fIit~pn  409 (597)
                      +|-.+.+    .+ ++ .....+|.-+.++|+|| |.|++-+..
T Consensus       152 lsD~APnsG~~~~-D~-~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          152 LCDIGESSSNPLV-ER-DRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             EECCCCCCSSHHH-HH-HHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             eecCcCCCCCHHH-HH-HHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            9976655    22 11 11234588889999999 999999998

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.67  E-value=0.00029  Score=75.02  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=71.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccc--ccceeehhhhccC---CCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY--RRNVFSAELRSQY---EDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~--~~d~F~~dl~e~l---~~~~~s  366 (597)
                      ++.+||=||.|.|+.+..+++....+|+.|||++.+++.|++.+..........+.  ....+..|....+   ....++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            45799999999999999998877789999999999999999876442211000000  0012223311111   122357


Q ss_pred             eeEEEEccchhhh------ccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        367 LDLVSCQFCIHYS------FESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       367 FDvVi~~~vLh~l------Fes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ||+|+.-..-...      ....---..+++.++++|+|||+++..
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            9999874211000      000112357899999999999999864

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.62  E-value=0.00018  Score=76.14  Aligned_cols=120  Identities=20%  Similarity=0.140  Sum_probs=74.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++.+|||+++|.|+=+..++..+. ..|+++|+++.-+...++++...+...............|....-....++||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            4788999999999998888776542 479999999999999988877654321100000001122211110112357999


Q ss_pred             EEE----ccchhhhcc---------CHH-------HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSC----QFCIHYSFE---------SVQ-------QARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~----~~vLh~lFe---------s~~-------d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |++    ...-+.++.         +..       -..++|.++.++|||||+||-+|-+.
T Consensus       227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            986    221001000         111       12578999999999999999887544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.60  E-value=4.9e-05  Score=86.40  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=64.1

Q ss_pred             CCEEEEECCCCChhHHHHHh----cC----------CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc
Q psy17742        293 PIKVLDMGSGKGGDMLKWIN----GG----------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS  358 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~----~g----------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e  358 (597)
                      +..|||||||+|.++...+.    .+          ..+|++||.++.++..++.+.. ++...+.+     ++..++.+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~Vt-----VI~gd~ee  483 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVT-----IIESDMRS  483 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSE-----EEESCGGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEE-----EEeCchhh
Confidence            46899999999999654221    11          2389999999987766665543 33333222     34443222


Q ss_pred             c-CC---CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        359 Q-YE---DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       359 ~-l~---~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      . ++   ...++.|+|++-.. .++ ...+-...+|..+.+.|||||.+|
T Consensus       484 v~lp~~~~~~ekVDIIVSElm-Gsf-l~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          484 LPGIAKDRGFEQPDIIVSELL-GSF-GDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHHTTCCCCSEEEECCC-BTT-BGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccccccCCCCcccEEEEecc-ccc-cchhccHHHHHHHHHhCCCCcEEE
Confidence            1 11   11357999998643 222 122334567888889999999874

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.55  E-value=0.00017  Score=72.71  Aligned_cols=123  Identities=10%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-------CC------CEEEEEeCCh---HHHHH-----------HHHHHHhhhhhc--
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-------GV------KHVVFADIAS---VSIED-----------CKTRYEELKRKE--  342 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-------g~------~~V~GIDiS~---~mIe~-----------A~er~~~~~~~~--  342 (597)
                      +..+|||||+|+|..+..++..       +.      .+|+++|..+   +++..           |++.........  
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999977664321       21      3899999876   55553           333333210000  


Q ss_pred             -----cc-cccccceeehhhhccCCCCC----CceeEEEEc-cchhhhccCHHH--HHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        343 -----EA-RPYRRNVFSAELRSQYEDKA----LELDLVSCQ-FCIHYSFESVQQ--ARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       343 -----~~-~~~~~d~F~~dl~e~l~~~~----~sFDvVi~~-~vLh~lFes~~d--~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                           .. .......+..|..+.++...    ..||+|+.- |+-...    ++  -..+|+.+.++|+|||+|+. ...
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~----p~lw~~~~l~~l~~~L~pGG~l~t-ysa  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKN----PDMWTQNLFNAMARLARPGGTLAT-FTS  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTC----GGGCCHHHHHHHHHHEEEEEEEEE-SCC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccC----hhhcCHHHHHHHHHHcCCCcEEEE-EeC
Confidence                 00 00001133334333233211    269999873 322111    12  24799999999999999884 333


Q ss_pred             hhHHHHHHhh
Q psy17742        410 SNQIMARYRR  419 (597)
Q Consensus       410 ~~~i~~~l~~  419 (597)
                      ...+...+..
T Consensus       215 a~~vrr~L~~  224 (257)
T 2qy6_A          215 AGFVRRGLQE  224 (257)
T ss_dssp             BHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            3455555554

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.47  E-value=9.8e-05  Score=74.24  Aligned_cols=43  Identities=7%  Similarity=0.016  Sum_probs=37.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCE--EEEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKH--VVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~--V~GIDiS~~mIe~A~er~~~  337 (597)
                      ++.+|||||||+|.++. +.. + .+  |+|+|+++.|++.++++...
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~   65 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL   65 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT
T ss_pred             CcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc
Confidence            56789999999999999 654 4 46  99999999999999987654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.23  E-value=0.00021  Score=66.53  Aligned_cols=88  Identities=15%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             CCCEEEEECCCCC-hhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKG-GDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG-~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||.| ..+..++. .|+ .|+++|+++..++                ++..|.|...+.     .-..||+
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~~-----~Y~~~DL   92 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRME-----IYRGAAL   92 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCHH-----HHTTEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCccc-----ccCCcCE
Confidence            3579999999999 58888886 775 8999999998766                111234543211     0125999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |.+...-       .++...+.++++.+  |.-+++.....
T Consensus        93 IYsirPP-------~El~~~i~~lA~~v--~adliI~pL~~  124 (153)
T 2k4m_A           93 IYSIRPP-------AEIHSSLMRVADAV--GARLIIKPLTG  124 (153)
T ss_dssp             EEEESCC-------TTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred             EEEcCCC-------HHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence            9775432       34445555555543  56677765444

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.20  E-value=0.0018  Score=66.26  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc------CCCEEEEEeCChH--------------------------HHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING------GVKHVVFADIASV--------------------------SIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~------g~~~V~GIDiS~~--------------------------mIe~A~er~~~~~  339 (597)
                      .+..|||+|+..|.-+..++..      ...+|+++|..+.                          +++.+++++...+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4578999999999977765432      1358999996422                          4667788777665


Q ss_pred             hh-ccccccccceeehhhhccCCCC-CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        340 RK-EEARPYRRNVFSAELRSQYEDK-ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       340 ~~-~~~~~~~~d~F~~dl~e~l~~~-~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      .. .+..     +...+..+.++.. .++||+|..=... |     +.....|..+...|+|||++++.-..
T Consensus       186 l~~~~I~-----li~Gda~etL~~~~~~~~d~vfIDaD~-y-----~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          186 LLDEQVR-----FLPGWFKDTLPTAPIDTLAVLRMDGDL-Y-----ESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             CCSTTEE-----EEESCHHHHSTTCCCCCEEEEEECCCS-H-----HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             CCcCceE-----EEEeCHHHHHhhCCCCCEEEEEEcCCc-c-----ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence            42 2221     3333322333321 3579999876543 2     34567899999999999999996543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.10  E-value=0.00076  Score=68.91  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      ++..|||++||+|..+..++..| .+++|+|+++.+++.|++++...
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            57899999999999999988888 49999999999999999998654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.05  E-value=0.00064  Score=68.64  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=62.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeeh-hhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSA-ELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~-dl~e~l~~~~~sF  367 (597)
                      +++.+||||||+.|+++...+.. ++..|.|.++.... .     ....... ....  +..+.+. |+.. +.  ..++
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~~~~~~Gv~--~i~~~~G~Df~~-~~--~~~~  140 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPMLMQSYGWN--IVTMKSGVDVFY-KP--SEIS  140 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCCCCCSTTGG--GEEEECSCCGGG-SC--CCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCCcccCCCce--EEEeeccCCccC-CC--CCCC
Confidence            37899999999999999988765 23344555554330 0     0000000 0000  0001112 3322 22  2469


Q ss_pred             eEEEEccchh---hhccCHHHHHHHHHHHHHhccCCc-EEEEEeCCh--hHHHH
Q psy17742        368 DLVSCQFCIH---YSFESVQQARCMLKNAAECLKPGG-FFVGTVPDS--NQIMA  415 (597)
Q Consensus       368 DvVi~~~vLh---~lFes~~d~~~~L~~i~rlLKPGG-~fIit~pn~--~~i~~  415 (597)
                      |+|+|-.+-.   ...++...+. +|.-+.++|+||| .|++-+...  ..+.+
T Consensus       141 DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          141 DTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             CEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence            9999965321   1111112223 6777889999999 999998887  55544

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.05  E-value=0.00098  Score=68.23  Aligned_cols=56  Identities=18%  Similarity=0.114  Sum_probs=44.6

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      |+...+..+..    .++..+||++||.|+++..+++.+ .+|+|+|.++.+++.|++ +..
T Consensus        10 Ll~e~le~L~~----~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~   65 (285)
T 1wg8_A           10 LYQEALDLLAV----RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL   65 (285)
T ss_dssp             THHHHHHHHTC----CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC
T ss_pred             HHHHHHHhhCC----CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc
Confidence            44555554432    267899999999999999998874 599999999999999998 644

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.01  E-value=0.003  Score=70.05  Aligned_cols=113  Identities=16%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----C----------CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-h
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----G----------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-L  356 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g----------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l  356 (597)
                      ++.+|||-+||+|+++....+.    .          ...++|+|+++.+...|+-+.--.+.....      +...+ +
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~------I~~~dtL  290 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR------IDPENSL  290 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE------EECSCTT
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc------ccccccc
Confidence            5678999999999998765321    1          136999999999999998765444332111      22222 1


Q ss_pred             hccCC--CCCCceeEEEEccchhhh------------ccCHHHHHHHHHHHHHhcc-------CCcEEEEEeCCh
Q psy17742        357 RSQYE--DKALELDLVSCQFCIHYS------------FESVQQARCMLKNAAECLK-------PGGFFVGTVPDS  410 (597)
Q Consensus       357 ~e~l~--~~~~sFDvVi~~~vLh~l------------Fes~~d~~~~L~~i~rlLK-------PGG~fIit~pn~  410 (597)
                      ..++.  ....+||+|+++--+..-            +.+...-..++..+.+.||       |||++.+.+|+.
T Consensus       291 ~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          291 RFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             CSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             cCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            11111  112469999997544211            1111223457888888886       799999999875

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.87  E-value=0.0041  Score=65.97  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCCh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIAS  325 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~  325 (597)
                      ++.+||||||++|+++..+++.|. .|+|||+.+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~  243 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP  243 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh
Confidence            789999999999999999998884 999999875

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.83  E-value=0.058  Score=56.26  Aligned_cols=114  Identities=12%  Similarity=0.090  Sum_probs=73.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhh--------------------ccccccccc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRK--------------------EEARPYRRN  350 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~--------------------~~~~~~~~d  350 (597)
                      +...|+.||||.......+... +...++-||. |.+++.-++.+...+..                    .+...+..|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4578999999999988887653 2347888888 77777777766654211                    111101111


Q ss_pred             eeehhh----hccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE-EEeCCh
Q psy17742        351 VFSAEL----RSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV-GTVPDS  410 (597)
Q Consensus       351 ~F~~dl----~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI-it~pn~  410 (597)
                      ....+.    ..... ......++++-.+++|+  +.+....+|+.+...+ |||.++ +...++
T Consensus       176 L~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL--~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~  236 (334)
T 1rjd_A          176 LNDITETTRLLDVCT-KREIPTIVISECLLCYM--HNNESQLLINTIMSKF-SHGLWISYDPIGG  236 (334)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred             CCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCC--CHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence            222111    12222 22457899999999998  7788999999999988 667664 554433

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.66  E-value=0.0058  Score=62.83  Aligned_cols=116  Identities=17%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh-hhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA-ELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~-dl~e~l~~~~~sFDv  369 (597)
                      ++.+||||||++|+++...+. .++..|+|+|+-..--+.-+ .....+....      .+... |+ ..++.  .++|+
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV------~~~~~~Dv-~~l~~--~~~D~  163 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIV------TMKSGVDV-FYRPS--ECCDT  163 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGE------EEECSCCT-TSSCC--CCCSE
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcce------EEEeccCH-hhCCC--CCCCE
Confidence            677999999999999996554 46678999999765110000 0000010100      01111 11 12332  45999


Q ss_pred             EEEccchhhhccC----HHHHHHHHHHHHHhccCC-cEEEEEeCCh--hHHHHHHhh
Q psy17742        370 VSCQFCIHYSFES----VQQARCMLKNAAECLKPG-GFFVGTVPDS--NQIMARYRR  419 (597)
Q Consensus       370 Vi~~~vLh~lFes----~~d~~~~L~~i~rlLKPG-G~fIit~pn~--~~i~~~l~~  419 (597)
                      |+|--+ .-. .+    ...-..+|.-+.+.|++| |-|++-+..+  ..+.+.+..
T Consensus       164 ivcDig-eSs-~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~  218 (321)
T 3lkz_A          164 LLCDIG-ESS-SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMEL  218 (321)
T ss_dssp             EEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHH
T ss_pred             EEEECc-cCC-CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHH
Confidence            999644 111 11    112234778888999999 9999999888  555555543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.54  E-value=0.00054  Score=88.37  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc------CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING------GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~------g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      +..+||+||.|+|..+..+...      ...+|+.+|+|+...+.|++++........       .+..  ....+....
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~-------~~d~--~~~~~~~~~ 1310 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQG-------QWDP--ANPAPGSLG 1310 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEE-------CCCS--SCCCC----
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccc-------cccc--cccccCCCC
Confidence            5679999999999876554322      134799999999998888887754321100       0110  010011224


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      .||+|++..++|..    .+....|++++++|||||++++..+
T Consensus      1311 ~ydlvia~~vl~~t----~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATL----GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC------------------------CCEEEEEEC
T ss_pred             ceeEEEEccccccc----ccHHHHHHHHHHhcCCCcEEEEEec
Confidence            69999999999876    7788899999999999999988654

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.52  E-value=0.02  Score=59.09  Aligned_cols=113  Identities=8%  Similarity=-0.034  Sum_probs=71.4

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh--ccccccccceeehhhhccCCC---CCCcee
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVFSAELRSQYED---KALELD  368 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~--~~~~~~~~d~F~~dl~e~l~~---~~~sFD  368 (597)
                      ..|++||||-=.....+.......|+-+| -|..++..++.+...+..  .....+..|... ++.+.+..   ....-=
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            46999999965554444322225899999 588888888887643221  111101111111 11111110   112245


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++++-.+++|+  +.++...+|+.+...+.||+++++...+.
T Consensus       182 ~~i~Egvl~Yl--~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          182 AWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             EEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             EEEEechHhhC--CHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            77888889998  55788999999999999999999998765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.32  E-value=0.011  Score=59.15  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh--hhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA--ELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~--dl~e~l~~~~~sFD  368 (597)
                      ++.+||||||++|+++...+. .++.+|+|+|+-..--+.-+ .....+...       ..|..  |+ ..++.  .++|
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~-------v~fk~gvDv-~~~~~--~~~D  146 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNI-------VKLMSGKDV-FYLPP--EKCD  146 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTS-------EEEECSCCG-GGCCC--CCCS
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCc-------eEEEeccce-eecCC--cccc
Confidence            677999999999999997654 46678999999754210000 000001110       02222  21 12222  4599


Q ss_pred             EEEEccchhh-hcc-CHHHHHHHHHHHHHhccCCcEEEEEeCChhH--HHHHHh
Q psy17742        369 LVSCQFCIHY-SFE-SVQQARCMLKNAAECLKPGGFFVGTVPDSNQ--IMARYR  418 (597)
Q Consensus       369 vVi~~~vLh~-lFe-s~~d~~~~L~~i~rlLKPGG~fIit~pn~~~--i~~~l~  418 (597)
                      +|+|-.+=.. ... ....-..+|.-+.++|++ |-|++-+..+..  +.+.+.
T Consensus       147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~  199 (267)
T 3p8z_A          147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLE  199 (267)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHH
T ss_pred             EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHH
Confidence            9999644211 000 011223478888899999 899988877743  544443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.31  E-value=0.0063  Score=60.83  Aligned_cols=46  Identities=17%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      ++..|||..||+|..+......| .+++|+|+++.+++.|++|+...
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhc
Confidence            67899999999999999988887 59999999999999999997654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.22  E-value=0.21  Score=51.51  Aligned_cols=119  Identities=14%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHhhcccCCCCCCCCEEEEECC------CCChhHHH-HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc
Q psy17742        270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGS------GKGGDMLK-WINGGVKHVVFADIASVSIEDCKTRYEELKRKE  342 (597)
Q Consensus       270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGC------GtG~~l~~-la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~  342 (597)
                      |.+|-.-+-.|+......  -..+.+|||||+      -.|.+... |...| ..|+++|+.+-..           .. 
T Consensus        89 nv~kytqlcqyl~~~~~~--vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g-~~VVavDL~~~~s-----------da-  153 (344)
T 3r24_A           89 NVAKYTQLCQYLNTLTLA--VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTG-TLLVDSDLNDFVS-----------DA-  153 (344)
T ss_dssp             HHHHHHHHHHHHTTSCCC--CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTT-CEEEEEESSCCBC-----------SS-
T ss_pred             eHHHHHHHHHHhccccEe--ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCC-cEEEEeeCccccc-----------CC-
Confidence            445544444454321111  114789999997      45664333 43333 3899999987421           00 


Q ss_pred             cccccccceeehhhhccCCCCCCceeEEEEccch---hhhc----cCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        343 EARPYRRNVFSAELRSQYEDKALELDLVSCQFCI---HYSF----ESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       343 ~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vL---h~lF----es~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                            ..++..|......  .++||+|++-.+-   .+.-    ....-.+.++.-+.++|+|||.|++-+....
T Consensus       154 ------~~~IqGD~~~~~~--~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          154 ------DSTLIGDCATVHT--ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             ------SEEEESCGGGEEE--SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             ------CeEEEcccccccc--CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence                  0133343222222  2579999985431   1100    0112356778888999999999999887663

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.90  E-value=0.11  Score=54.00  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=40.2

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      +.+||||.||.|++..-+...|+..+.++|+++.+++..+.++..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~   55 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC
Confidence            578999999999999999999987899999999999888887643

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=93.50  E-value=0.086  Score=55.23  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=43.1

Q ss_pred             HHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHH
Q psy17742        275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCK  332 (597)
Q Consensus       275 ~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~  332 (597)
                      +|+.+.+..+..    .++..++|..||.|+++..++.. + ..+|+|+|.++.+++.|+
T Consensus        44 VLl~Evl~~L~i----~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           44 VLLDEAVNGLNI----RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             TTTHHHHHHTCC----CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             ccHHHHHHhhCC----CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            356666665533    36789999999999999998875 2 358999999999999984

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=93.02  E-value=2.6  Score=43.80  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=60.3

Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH-----HHHHhhhccCccCCceEEEEecCCCCCC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI-----MARYRRHQSASFGNDVYQVQCLFDTSRP  441 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i-----~~~l~~~~~~~fgN~vy~I~F~~~~~d~  441 (597)
                      -=++++-.++.|+  +.+....+|+.+.....+|..++....++..-     ...++.     .               +
T Consensus       192 Ptl~iaEGvL~YL--~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~~-----~---------------g  249 (334)
T 3iei_A          192 PTLLIAECVLVYM--TPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRR-----R---------------Q  249 (334)
T ss_dssp             CEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHHHHHHT-----T---------------T
T ss_pred             CEEEEEchhhhCC--CHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHHHHHHH-----h---------------C
Confidence            4578888889998  77889999999999887666666655544211     111111     0               1


Q ss_pred             CCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742        442 PPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYL  491 (597)
Q Consensus       442 ~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~  491 (597)
                      .+..|..             ..-+.+...+.+.++||+.+...+..++|.
T Consensus       250 ~pl~sl~-------------~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~  286 (334)
T 3iei_A          250 CDLAGVE-------------TCKSLESQKERLLSNGWETASAVDMMELYN  286 (334)
T ss_dssp             CCCTTGG-------------GGGCHHHHHHHHHTTTCSEEEEEEHHHHHH
T ss_pred             CCCcccc-------------cCCCHHHHHHHHHHcCCCcceeecHHHHHH
Confidence            1111110             123567788899999999999999999984

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.55  E-value=0.22  Score=51.78  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=60.3

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|||. |..+..+++ .|...|+++|.++..++.+++.-...-.....     ..+...+.+ +..  +.+|
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-----~~~~~~~~~-~~~--gg~D  260 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT-----QDPVAAIKE-ITD--GGVN  260 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTT-----SCHHHHHHH-HTT--SCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCc-----cCHHHHHHH-hcC--CCCc
Confidence            3678999999876 666666665 45557999999999888886542111000000     001111111 111  2599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-          ...+..+.++|++||.++..
T Consensus       261 ~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          261 FALESTGS----------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence            99865321          24577888999999999874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=91.95  E-value=0.22  Score=52.72  Aligned_cols=43  Identities=23%  Similarity=0.330  Sum_probs=38.2

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      .+||||.||.|++..-+...|+..+.++|+++.+++..+.++.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~   45 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP   45 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC
Confidence            5799999999999999999998778899999999888877654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=91.84  E-value=0.71  Score=47.66  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CceeEEEEccchhhhccCHHHH----HHHHHHHHHhccCCcEEE
Q psy17742        365 LELDLVSCQFCIHYSFESVQQA----RCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~----~~~L~~i~rlLKPGG~fI  404 (597)
                      .+||+|+.-.     |....++    ..+|+.++++++|||.|+
T Consensus       185 ~~~Da~flDg-----FsP~kNPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          185 FKADAVFHDA-----FSPYKNPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             CCEEEEEECC-----SCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             cceeEEEeCC-----CCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence            4699997632     1211222    579999999999999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.81  E-value=0.16  Score=52.01  Aligned_cols=94  Identities=14%  Similarity=0.062  Sum_probs=59.4

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---hhhccCCCCCCc
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---ELRSQYEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---dl~e~l~~~~~s  366 (597)
                      .++.+||-+|+|. |..+..+++....+|+++|.++..++.+++.-...            .+..   +..+.+....+.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------------~i~~~~~~~~~~~~~~~g~  232 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEV------------AVNARDTDPAAWLQKEIGG  232 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE------------EEETTTSCHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCE------------EEeCCCcCHHHHHHHhCCC
Confidence            3678999999975 67777776643349999999999888876532111            1111   111111001125


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+|+....-          ...+..+.++|+|||.++..
T Consensus       233 ~d~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          233 AHGVLVTAVS----------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEEeCCC----------HHHHHHHHHHhccCCEEEEe
Confidence            8988764321          24577788899999999875

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=91.47  E-value=0.076  Score=54.28  Aligned_cols=104  Identities=7%  Similarity=-0.040  Sum_probs=71.4

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCCcee
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKALELD  368 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~sFD  368 (597)
                      +..+||+=+|+|.+...+++.+ .+++.+|.++..++..++++...   .+..     ++..|    +....+. ..+||
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~---~~~~-----V~~~D~~~~L~~l~~~-~~~fd  161 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN---KKVY-----VNHTDGVSKLNALLPP-PEKRG  161 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT---SCEE-----EECSCHHHHHHHHCSC-TTSCE
T ss_pred             CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC---CcEE-----EEeCcHHHHHHHhcCC-CCCcc
Confidence            4568999999999999988855 79999999999999888876542   1111     33333    2222222 34699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHH--hccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAE--CLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~r--lLKPGG~fIit~pn~  410 (597)
                      +|++=-....    ..+...++..+.+  .+.|+|++++-.|-.
T Consensus       162 LVfiDPPYe~----k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~  201 (283)
T 2oo3_A          162 LIFIDPSYER----KEEYKEIPYAIKNAYSKFSTGLYCVWYPVV  201 (283)
T ss_dssp             EEEECCCCCS----TTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred             EEEECCCCCC----CcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence            9998644421    2456666766665  457999999887644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.42  E-value=0.22  Score=51.27  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=41.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      ++..|||.-||+|..+......| .+++|+|+++..++.|++|+...
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhc
Confidence            67899999999999999888887 59999999999999999987654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=91.40  E-value=0.5  Score=49.22  Aligned_cols=100  Identities=14%  Similarity=0.045  Sum_probs=60.1

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++.-...-.....     .-+...+.+......+.+|+
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-----~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA-----GDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS-----SCHHHHHHSTTSSSTTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC-----cCHHHHHHhhhhccCCCCCE
Confidence            678999999875 5566666654 5558999999999888877642111000000     00111111111011236999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+-.-.-          ...+..+.++|++||.++..
T Consensus       257 vid~~G~----------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          257 VIECAGV----------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence            9875321          24577888999999999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.07  E-value=0.37  Score=49.76  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.....-...... . ...+...+.....   +.+|+
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~-~-~~~~~~~i~~~~~---~g~D~  245 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE-S-PQEIARKVEGQLG---CKPEV  245 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSC-C-HHHHHHHHHHHHT---SCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCccc-c-cchHHHHHHHHhC---CCCCE
Confidence            678999999875 6666666664 54589999999988888764321100000000 0 0000000111111   35999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+-.-.-          ...+..+.++|+|||.++..
T Consensus       246 vid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          246 TIECTGA----------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             EEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            9865321          13567778899999999874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=90.85  E-value=0.33  Score=49.98  Aligned_cols=98  Identities=13%  Similarity=-0.013  Sum_probs=59.6

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++.-...-.....     .-+...+.+.. . ...+|+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-----~~~~~~v~~~t-~-g~g~D~  238 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-----GDIVEQILKAT-D-GKGVDK  238 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGG-----SCHHHHHHHHT-T-TCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCC-----cCHHHHHHHHc-C-CCCCCE
Confidence            678899999875 6666666665 5448999999999888887642211000000     00111111111 1 135999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+-.-.-          ...+..+.++|+|||.++..
T Consensus       239 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          239 VVIAGGD----------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC----------hHHHHHHHHHHhcCCEEEEe
Confidence            9864322          13567788899999999874

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=90.79  E-value=0.31  Score=50.30  Aligned_cols=46  Identities=22%  Similarity=0.179  Sum_probs=39.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCCh---HHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIAS---VSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~---~mIe~A~er~~~~  338 (597)
                      ++..|||--||+|..+......| .+++|+|+++   ..++.|++|+...
T Consensus       242 ~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          242 PGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHc
Confidence            67899999999999999888877 5999999999   9999999987654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.68  E-value=0.22  Score=46.61  Aligned_cols=96  Identities=17%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             CCCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccc-eeehhhhccCCCCCCc
Q psy17742        291 GSPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN-VFSAELRSQYEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d-~F~~dl~e~l~~~~~s  366 (597)
                      .++.+||-+|+  |.|..+..++. .|. +|+++|.+++.++.+++.    +......  ..+ .+...+.+...  .+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~----g~~~~~d--~~~~~~~~~~~~~~~--~~~  107 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL----GVEYVGD--SRSVDFADEILELTD--GYG  107 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT----CCSEEEE--TTCSTHHHHHHHHTT--TCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCCEEee--CCcHHHHHHHHHHhC--CCC
Confidence            36789999995  34555555443 464 899999999877766431    1110000  000 00000111111  135


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+|+..-.-           ..+..+.++|+|||+++..
T Consensus       108 ~D~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          108 VDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEECCch-----------HHHHHHHHHhccCCEEEEE
Confidence            9999875321           3567888999999998874

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=90.58  E-value=0.34  Score=50.94  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHH
Q psy17742        293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRY  335 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~  335 (597)
                      +..|||||.|.|.++..++.. ...+|+++++++.++...++.+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            588999999999999999875 3468999999999999988876

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=90.55  E-value=0.34  Score=49.35  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=37.4

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      .+||||-||.|++..-+...|+.-+.++|+++.+++.-+.++.
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~   43 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS   43 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC
Confidence            3699999999999999999998778899999998887776653

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=90.09  E-value=0.46  Score=49.39  Aligned_cols=96  Identities=15%  Similarity=0.075  Sum_probs=60.3

Q ss_pred             CCCEEEEEC-CCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMG-SGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLG-CGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+||=+| +|. |..+..+++. +..+|+++|.++.-++.+++.    +......  ..+.+...+. .+  ..+.+|
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----Gad~vi~--~~~~~~~~v~-~~--~~~g~D  241 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----GAHHVID--HSKPLAAEVA-AL--GLGAPA  241 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----TCSEEEC--TTSCHHHHHH-TT--CSCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----CCCEEEe--CCCCHHHHHH-Hh--cCCCce
Confidence            567899998 554 7777778875 556999999999888887652    2111000  0001111122 22  224699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-          ...+..+.++|++||.++..
T Consensus       242 vvid~~g~----------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          242 FVFSTTHT----------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEECSCH----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCc----------hhhHHHHHHHhcCCCEEEEE
Confidence            99874221          24677888999999999875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.68  E-value=0.36  Score=50.73  Aligned_cols=108  Identities=11%  Similarity=0.015  Sum_probs=61.2

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|||. |..+..+++ .|..+|+++|.++..++.+++.    +..... ....+.+...+.+ +.. ...||
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~i~-~~~~~~~~~~~~~-~~~-g~g~D  256 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----GFETID-LRNSAPLRDQIDQ-ILG-KPEVD  256 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----TCEEEE-TTSSSCHHHHHHH-HHS-SSCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCcEEc-CCCcchHHHHHHH-HhC-CCCCC
Confidence            3678999999976 667777665 4555899999999988887643    211000 0000000111111 111 12599


Q ss_pred             EEEEccchhhhccCH-----HHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESV-----QQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~-----~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+-.-.-... .+.     ......+..+.++|++||++++.
T Consensus       257 vvid~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          257 CGVDAVGFEAH-GLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEECSCTTCB-CSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             EEEECCCCccc-cccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            99875432110 000     00123678888999999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=89.44  E-value=0.88  Score=46.91  Aligned_cols=103  Identities=15%  Similarity=0.056  Sum_probs=60.4

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++. ...-............+...+.+...  ...+|+
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~--g~g~Dv  255 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFG--GIEPAV  255 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTS--SCCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhC--CCCCCE
Confidence            678899999865 6666666654 554599999999999988875 21111000000000001111111111  235999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+-.-.-          ...+..+.++|++||.++..-
T Consensus       256 vid~~g~----------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          256 ALECTGV----------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             EEECSCC----------HHHHHHHHHHSCTTCEEEECC
T ss_pred             EEECCCC----------hHHHHHHHHHhcCCCEEEEEc
Confidence            9875322          135677888999999998753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=89.33  E-value=0.7  Score=47.52  Aligned_cols=100  Identities=11%  Similarity=-0.046  Sum_probs=57.6

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc-ceeehhhhccCCC-CCCcee
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR-NVFSAELRSQYED-KALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~-d~F~~dl~e~l~~-~~~sFD  368 (597)
                      ++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++..    ...... ... ..+...+.+.... ....+|
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a~~~~~-~~~~~~~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG----ADVTLV-VDPAKEEESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----CSEEEE-CCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----CCEEEc-CcccccHHHHHHHHhccccCCCCC
Confidence            678999999874 56666666543246999999999888876432    110000 000 0000111111110 013599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-          ...+..+.++|++||.++..
T Consensus       243 ~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          243 VTIDCSGN----------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             EEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            99875322          13567778899999999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.29  E-value=0.59  Score=48.72  Aligned_cols=91  Identities=20%  Similarity=0.108  Sum_probs=58.3

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---hhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---ELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---dl~e~l~~~~~sF  367 (597)
                      ++.+||-+|+|. |..+..+++....+|+++|.++..++.+++.    +...        .+..   +....+.   +.+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~~--------vi~~~~~~~~~~~~---~g~  258 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GADE--------VVNSRNADEMAAHL---KSF  258 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCSE--------EEETTCHHHHHTTT---TCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcE--------EeccccHHHHHHhh---cCC
Confidence            678999999875 6666666654334799999999988888752    1110        1111   1112222   359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|+..-.-.          ..++.+.++|++||.++..-
T Consensus       259 Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          259 DFILNTVAAP----------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EEEEECCSSC----------CCHHHHHTTEEEEEEEEECC
T ss_pred             CEEEECCCCH----------HHHHHHHHHhccCCEEEEec
Confidence            9998653321          13566778999999988643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.18  E-value=0.43  Score=49.99  Aligned_cols=109  Identities=13%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|||. |..+..+++. |...|+++|.++.-++.+++.-.. ... ..   ..+.+...+.+.. . ...+|
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~-~~---~~~~~~~~v~~~t-~-g~g~D  256 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IAD-LS---LDTPLHEQIAALL-G-EPEVD  256 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEE-TT---SSSCHHHHHHHHH-S-SSCEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEc-cC---CcchHHHHHHHHh-C-CCCCC
Confidence            3678999999875 6677777664 555899999999988888653211 000 00   0000111111111 1 13599


Q ss_pred             EEEEccchhhhc-----cCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSF-----ESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lF-----es~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+-.-.-....     .+.......+..+.++|++||.+++.
T Consensus       257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            998754321000     00012234678888999999999764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=89.13  E-value=0.48  Score=48.48  Aligned_cols=98  Identities=10%  Similarity=0.003  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCCC--ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGSGK--GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCGt--G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .++.+||-+|+|.  |..+..+++ .|. +|+++|.++.-++.+++.-...-....     ...+...+.+...  ...+
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~-----~~~~~~~~~~~~~--~~g~  214 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTS-----TAPLYETVMELTN--GIGA  214 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETT-----TSCHHHHHHHHTT--TSCE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCC-----cccHHHHHHHHhC--CCCC
Confidence            3678999999974  556666555 464 999999999988888763211000000     0001111111111  1359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|+..-.-       ..    +....++|++||.++..-
T Consensus       215 Dvvid~~g~-------~~----~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          215 DAAIDSIGG-------PD----GNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEESSCH-------HH----HHHHHHTEEEEEEEEECC
T ss_pred             cEEEECCCC-------hh----HHHHHHHhcCCCEEEEEe
Confidence            999875432       11    123347999999998753

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=88.95  E-value=6.2  Score=39.50  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      .+||+|..=.-. |     ......+..+...|+|||++++.-.+
T Consensus       181 ~~~dlv~ID~D~-Y-----~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          181 TVIALAYFDLDL-Y-----EPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             CCEEEEEECCCC-H-----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             CceEEEEEcCcc-c-----chHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            469999876532 3     45567899999999999999997653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=88.81  E-value=1.2  Score=46.74  Aligned_cols=105  Identities=11%  Similarity=0.056  Sum_probs=58.2

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ..++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++.-...-....     ..-+...+.+ +.. ...+
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~-----~~~~~~~i~~-~t~-g~g~  283 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPT-----KENFVEAVLD-YTN-GLGA  283 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTT-----TSCHHHHHHH-HTT-TCCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCC-----CCCHHHHHHH-HhC-CCCC
Confidence            34688999999864 5566666654 555999999999988888754211100000     0001111111 111 1359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+-.-.-..     .....+++.+.+.+++||.++..
T Consensus       284 D~vid~~g~~~-----~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          284 KLFLEATGVPQ-----LVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             SEEEECSSCHH-----HHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CEEEECCCCcH-----HHHHHHHHHHHhccCCCcEEEEe
Confidence            99986532210     12223334334555999999875

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=88.78  E-value=0.33  Score=50.45  Aligned_cols=44  Identities=25%  Similarity=0.318  Sum_probs=38.9

Q ss_pred             CEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHh
Q psy17742        294 IKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      .+||||.||.|++...+...|  +..|+++|+++.+++..+.++..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~   48 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH   48 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc
Confidence            579999999999999998888  45799999999999998888654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=88.66  E-value=0.59  Score=47.57  Aligned_cols=96  Identities=16%  Similarity=-0.033  Sum_probs=56.1

Q ss_pred             CCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+||-.||  |.|..+..++. .|. +|+++|.++..++.+++ +   +........-...+...+.. ...  +.+|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~-~---g~~~~~d~~~~~~~~~~~~~-~~~--~~~d  216 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ-I---GFDAAFNYKTVNSLEEALKK-ASP--DGYD  216 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TCSEEEETTSCSCHHHHHHH-HCT--TCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-c---CCcEEEecCCHHHHHHHHHH-HhC--CCCe
Confidence            6789999998  44555555554 564 99999999988877733 2   11100000000000000111 111  3699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-           ..+..+.++|++||.+++.
T Consensus       217 ~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          217 CYFDNVGG-----------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             EEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCh-----------HHHHHHHHHHhcCCEEEEE
Confidence            99876432           2467788999999999764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=88.35  E-value=0.54  Score=48.19  Aligned_cols=98  Identities=10%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.+++.-...-.. .     ...+...+.+ +.. ...+|+
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~-~-----~~~~~~~v~~-~t~-g~g~d~  242 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVK-S-----GAGAADAIRE-LTG-GQGATA  242 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEE-C-----STTHHHHHHH-HHG-GGCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEc-C-----CCcHHHHHHH-HhC-CCCCeE
Confidence            678999999875 6666666654 4569999999999888886532111000 0     0000001111 111 125999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+-.-.-          ...+..+.++|++||.++..-
T Consensus       243 v~d~~G~----------~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          243 VFDFVGA----------QSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEESSCC----------HHHHHHHHHHEEEEEEEEECS
T ss_pred             EEECCCC----------HHHHHHHHHHHhcCCEEEEEC
Confidence            9875322          136778889999999998753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.94  E-value=0.76  Score=47.16  Aligned_cols=89  Identities=20%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.    +...        .+ .+ .+.+..   .+|+|
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~--------v~-~~-~~~~~~---~~D~v  238 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GVKH--------FY-TD-PKQCKE---ELDFI  238 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TCSE--------EE-SS-GGGCCS---CEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CCCe--------ec-CC-HHHHhc---CCCEE
Confidence            678999999875 6666666664334999999999988877652    2111        22 11 112221   59999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +-.-.-.          ..+..+.++|+|||.++..-
T Consensus       239 id~~g~~----------~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          239 ISTIPTH----------YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EECCCSC----------CCHHHHHTTEEEEEEEEECC
T ss_pred             EECCCcH----------HHHHHHHHHHhcCCEEEEEC
Confidence            8653321          14567788999999998753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.83  E-value=0.64  Score=48.14  Aligned_cols=99  Identities=9%  Similarity=-0.029  Sum_probs=59.1

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++.+||=+|+|. |..+..+++....+|+++|.++.-++.+++.-...-.. ..    ...+...+.....  ...+|+
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~-~~----~~~~~~~v~~~~~--g~g~D~  260 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGIN-RL----EEDWVERVYALTG--DRGADH  260 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEE-TT----TSCHHHHHHHHHT--TCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEc-CC----cccHHHHHHHHhC--CCCceE
Confidence            4678999999775 56666666543349999999999888876532111000 00    0001111111111  135999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+..-.-           ..+..+.++|+|||.++..-
T Consensus       261 vid~~g~-----------~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          261 ILEIAGG-----------AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             EEEETTS-----------SCHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCh-----------HHHHHHHHHhhcCCEEEEEe
Confidence            9875331           24567778999999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=87.44  E-value=0.85  Score=46.72  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=58.2

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee----hhhhccCCCC
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING---GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS----AELRSQYEDK  363 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~----~dl~e~l~~~  363 (597)
                      ++.+||-+|+|. |..+..+++.   | .+|+++|.++.-++.+++.-    ...        .+.    .+....+.. 
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~lG----a~~--------vi~~~~~~~~~~~~~~-  235 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALELG----ADY--------VSEMKDAESLINKLTD-  235 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHT----CSE--------EECHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHhC----CCE--------EeccccchHHHHHhhc-
Confidence            578999999964 5566666653   5 48999999999888886532    110        111    111112221 


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ...+|+|+..-.-          ...++.+.++|+|||.++..
T Consensus       236 g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          236 GLGASIAIDLVGT----------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             TCCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCccEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence            1259999875332          13567788999999998864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.61  E-value=1.1  Score=46.05  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=57.7

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.-...-....     ...+...+.+ +.. ...+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~-----~~~~~~~v~~-~~~-g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF-----EEDVVKEVMD-ITD-GNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTT-----TSCHHHHHHH-HTT-TSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC-----CcCHHHHHHH-HcC-CCCCCE
Confidence            568899999964 5566666654 544899999999888877643211000000     0001111111 111 125999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+..-..          ...+..+.++|++||.++..
T Consensus       240 vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          240 FLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            9875322          13567788899999998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=86.16  E-value=1.5  Score=44.72  Aligned_cols=97  Identities=14%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             CCCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .++.+||-+|+  |.|..+..+++ .| .+|+++|.++..++.+++.    +....... ....+...+.+...  ...+
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~----ga~~~~d~-~~~~~~~~~~~~~~--~~~~  236 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKAL----GADETVNY-THPDWPKEVRRLTG--GKGA  236 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH----TCSEEEET-TSTTHHHHHHHHTT--TTCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc----CCCEEEcC-CcccHHHHHHHHhC--CCCc
Confidence            36789999998  45666666665 45 4999999999988887642    11100000 00000001111111  1359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+..-. .          ..+..+.++|++||.++..
T Consensus       237 d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          237 DKVVDHTG-A----------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             EEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred             eEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence            99987643 1          2456778899999998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=85.64  E-value=0.78  Score=46.71  Aligned_cols=98  Identities=11%  Similarity=-0.065  Sum_probs=57.7

Q ss_pred             CCCEEEEECCC--CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSG--KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCG--tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||-+|++  .|..+..+++....+|+++|.++.-++.+.+.+.   ...... .....+...+.+.. .  +.+|+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g---~~~~~~-~~~~~~~~~~~~~~-~--~~~d~  221 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG---FDGAID-YKNEDLAAGLKREC-P--KGIDV  221 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---CSEEEE-TTTSCHHHHHHHHC-T--TCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC---CCEEEE-CCCHHHHHHHHHhc-C--CCceE
Confidence            67899999983  4666666655433499999999988777733221   110000 00000111111111 1  35999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+..-.-           ..+..+.++|++||.++..-
T Consensus       222 vi~~~g~-----------~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          222 FFDNVGG-----------EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             EEESSCH-----------HHHHHHHTTEEEEEEEEECC
T ss_pred             EEECCCc-----------chHHHHHHHHhhCCEEEEEe
Confidence            9875321           25778889999999998753

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=85.40  E-value=1.4  Score=46.83  Aligned_cols=47  Identities=13%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             CCCCEEEEECCCCChhHHHHH-hcC--CCEEEEEeCChHHHHHHHHHHHh
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWI-NGG--VKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la-~~g--~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      .++..|+|+|++.|..+..++ ..+  ..+|+++++++...+..+++...
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            478899999999999998877 333  36999999999999999988765

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.32  E-value=1.6  Score=44.65  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=56.7

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.    +....... ....+...+.+ +.   +.+|+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~~~d~-~~~~~~~~~~~-~~---~~~d~v  234 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GADLVVNP-LKEDAAKFMKE-KV---GGVHAA  234 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCSEEECT-TTSCHHHHHHH-HH---SSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC----CCCEEecC-CCccHHHHHHH-Hh---CCCCEE
Confidence            678999999864 5566665554324999999999988877642    21100000 00000000111 11   259999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +..-..          ...++.+.++|++||.++..
T Consensus       235 id~~g~----------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          235 VVTAVS----------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence            875322          13567788899999998864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=85.01  E-value=0.86  Score=46.29  Aligned_cols=98  Identities=10%  Similarity=0.019  Sum_probs=58.0

Q ss_pred             CCCCEEEEECC-C-CChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGS-G-KGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGC-G-tG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .++.+||=+|+ | .|..+..+++ .|. +|+++|.++.-++.+++.-...-....     ...+...+.+...  ...+
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~-----~~~~~~~~~~~~~--~~g~  210 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYS-----HEDVAKRVLELTD--GKKC  210 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETT-----TSCHHHHHHHHTT--TCCE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC-----CccHHHHHHHHhC--CCCc
Confidence            36789999983 3 4666666555 464 999999999988887653211000000     0001111111121  1359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|+..-.-           ..+..+.++|++||.++..-
T Consensus       211 Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          211 PVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEEESSCG-----------GGHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCCh-----------HHHHHHHHHhcCCCEEEEEe
Confidence            999875332           24567788999999998753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=84.73  E-value=1.3  Score=45.33  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             CCCEEEEEC-CCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMG-SGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLG-CGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+| +|. |..+..+++....+|+++|.++.-++.+++.-...-...      ..-+...+.+ +  ..+.+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~------~~~~~~~~~~-~--~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNH------KESLLNQFKT-Q--GIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECT------TSCHHHHHHH-H--TCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEEC------CccHHHHHHH-h--CCCCccE
Confidence            578899994 543 556666665433499999999998888876321100000      0011111211 2  1235999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+....-          ...+..+.++|++||.++..
T Consensus       221 v~d~~g~----------~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFNT----------DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSCH----------HHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCCc----------hHHHHHHHHHhccCCEEEEE
Confidence            9875221          24567888999999999764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=84.71  E-value=2.1  Score=43.51  Aligned_cols=99  Identities=16%  Similarity=0.105  Sum_probs=56.4

Q ss_pred             CCCEEEEECCCCCh-hHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGG-DMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~-~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|+|.++ .+..+++ .+..+|+++|.+++-++.+++.....-.....     .-+...+.+ +... ..+|+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~-----~~~~~~v~~-~t~g-~g~d~  235 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD-----VNPVDEIKK-ITGG-LGVQS  235 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C-----CCHHHHHHH-HTTS-SCEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC-----CCHHHHhhh-hcCC-CCceE
Confidence            67899999998754 3334443 55579999999998777776542221110000     000011111 1121 23666


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++....-          ...+....++|++||.+++.-
T Consensus       236 ~~~~~~~----------~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          236 AIVCAVA----------RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEECCSC----------HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEeccC----------cchhheeheeecCCceEEEEe
Confidence            6553211          245677788999999987753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=84.67  E-value=1  Score=45.86  Aligned_cols=98  Identities=12%  Similarity=0.006  Sum_probs=57.1

Q ss_pred             CCCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||=+|+  |.|..+..+++....+|+++|.++.-++.+++.    +...... .....+...+.+...  ...+|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~~~~-~~~~~~~~~~~~~~~--~~g~D  219 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAEYLIN-ASKEDILRQVLKFTN--GKGVD  219 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEE-TTTSCHHHHHHHHTT--TSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEe-CCCchHHHHHHHHhC--CCCce
Confidence            36789999994  335566666554334999999999888877653    1110000 000001111111111  23599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-           ..+..+.++|++||.++..
T Consensus       220 ~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          220 ASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             EEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            99875332           2466778899999999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=84.40  E-value=1.2  Score=45.84  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             CCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+||-+|+  |.|..+..+++ .| .+|+++|.++..++.+++.    +....... ....+...+.+...  ...+|
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~----ga~~~~d~-~~~~~~~~~~~~~~--~~~~D  241 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQN----GAHEVFNH-REVNYIDKIKKYVG--EKGID  241 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT----TCSEEEET-TSTTHHHHHHHHHC--TTCEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHc----CCCEEEeC-CCchHHHHHHHHcC--CCCcE
Confidence            6789999997  34555555554 45 4899999999887766542    11100000 00000000111111  13599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+....-           ..+....++|++||.++..
T Consensus       242 ~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          242 IIIEMLAN-----------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEEESCHH-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCh-----------HHHHHHHHhccCCCEEEEE
Confidence            99875321           2456778999999999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=84.33  E-value=1  Score=46.96  Aligned_cols=92  Identities=16%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee------hhhhc---cC
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS------AELRS---QY  360 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~------~dl~e---~l  360 (597)
                      ++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.    +...        .+.      .++.+   .+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~--------vi~~~~~~~~~~~~~v~~~  262 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GADL--------TLNRRETSVEERRKAIMDI  262 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCSE--------EEETTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CCcE--------EEeccccCcchHHHHHHHH
Confidence            678999999764 5566666654 435999999999988887642    2110        111      11111   11


Q ss_pred             CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .. ...+|+|+-.-.-          ...+..+.++|++||.++..
T Consensus       263 ~~-g~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          263 TH-GRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             TT-TSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             hC-CCCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            11 1259999875321          12467778899999998864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=83.98  E-value=1.2  Score=45.64  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             CCCEEEEECCCC--ChhHHHHHh-c-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---hh---hccCC
Q psy17742        292 SPIKVLDMGSGK--GGDMLKWIN-G-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---EL---RSQYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGt--G~~l~~la~-~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---dl---~e~l~  361 (597)
                      ++.+||-+|+|.  |..+..+++ . |. +|+++|.++..++.+++.    +...        .+..   +.   ...+.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~~--------~~~~~~~~~~~~~~~~~  236 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GADY--------VINASMQDPLAEIRRIT  236 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCSE--------EEETTTSCHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCCE--------EecCCCccHHHHHHHHh
Confidence            678999999984  445555544 4 64 899999999888877542    1110        1111   11   11111


Q ss_pred             CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .. +.+|+|+..-.-          ...+..+.++|++||.++..
T Consensus       237 ~~-~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          237 ES-KGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             TT-SCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             cC-CCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            11 369999876332          13567788999999998864

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=83.84  E-value=2.1  Score=44.28  Aligned_cols=100  Identities=17%  Similarity=0.102  Sum_probs=58.5

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.-...-.....   ....+...+. .+..  +.+|
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~~-~~~~--~g~D  264 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPND---HSEPISQVLS-KMTN--GGVD  264 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGG---CSSCHHHHHH-HHHT--SCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccc---cchhHHHHHH-HHhC--CCCC
Confidence            3678999999864 5566666654 5448999999999888886431110000000   0000100011 1111  2599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit  406 (597)
                      +|+..-.-          ...+..+.++|++| |.++..
T Consensus       265 ~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          265 FSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             EEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence            99865322          13567888999999 998864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=83.61  E-value=0.92  Score=46.83  Aligned_cols=91  Identities=18%  Similarity=0.097  Sum_probs=56.8

Q ss_pred             CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh----hhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA----ELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~----dl~e~l~~~~~  365 (597)
                      ++.+||-+|+|. |..+..+++ .|. +|+++|.++.-++.+++.-    ...        .+..    +..+.+.   +
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lG----a~~--------v~~~~~~~~~~~~~~---~  242 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMG----ADH--------YIATLEEGDWGEKYF---D  242 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHT----CSE--------EEEGGGTSCHHHHSC---S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcC----CCE--------EEcCcCchHHHHHhh---c
Confidence            678999999864 556666665 454 7999999999888887531    110        1211    1112222   3


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .+|+|+..-.--      .  ...++.+.++|++||.++..
T Consensus       243 ~~D~vid~~g~~------~--~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          243 TFDLIVVCASSL------T--DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             CEEEEEECCSCS------T--TCCTTTGGGGEEEEEEEEEC
T ss_pred             CCCEEEECCCCC------c--HHHHHHHHHHhcCCCEEEEe
Confidence            599998753220      0  02345567899999998864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=83.58  E-value=1.2  Score=45.73  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=57.8

Q ss_pred             CCCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||=+|+  |.|..+..+++....+|++++.++.-++.+++.-    ......  ....+...+.+...  ...+|
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g----a~~v~~--~~~~~~~~v~~~~~--~~g~D  229 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVG----ADIVLP--LEEGWAKAVREATG--GAGVD  229 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT----CSEEEE--SSTTHHHHHHHHTT--TSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC----CcEEec--CchhHHHHHHHHhC--CCCce
Confidence            36789999997  3466666666543349999999999888777632    111000  00001111111111  12599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|+..-.-           ..+..+.++|++||.++..-
T Consensus       230 vvid~~g~-----------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          230 MVVDPIGG-----------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EEEESCC-------------CHHHHHHTEEEEEEEEEC-
T ss_pred             EEEECCch-----------hHHHHHHHhhcCCCEEEEEE
Confidence            99875332           14667888999999998753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=83.55  E-value=2.4  Score=43.75  Aligned_cols=100  Identities=15%  Similarity=0.053  Sum_probs=58.9

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|+|. |..+..+++ .|...|+++|.++.-++.+++.-...-.....   ....+...+. .+..  +.+|
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~~v~-~~~~--~g~D  262 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQD---FSKPIQEVLI-EMTD--GGVD  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGG---CSSCHHHHHH-HHTT--SCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccc---ccccHHHHHH-HHhC--CCCC
Confidence            3678999999864 556666665 35558999999999888887532111000000   0000111111 1112  2599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit  406 (597)
                      +|+..-.-          ...+..+.++|++| |.++..
T Consensus       263 ~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          263 YSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             EEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence            99865321          13567888999999 999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=83.54  E-value=2.1  Score=44.33  Aligned_cols=99  Identities=12%  Similarity=-0.001  Sum_probs=58.8

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc-cceeehhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR-RNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~-~d~F~~dl~e~l~~~~~sF  367 (597)
                      .++.+||-+|+|. |..+..+++. |...|+++|.++.-++.+++.    +........- ..-+...+. .+..  +.+
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~i~-~~t~--gg~  262 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GATECLNPKDYDKPIYEVIC-EKTN--GGV  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHH-HHTT--SCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCcEEEecccccchHHHHHH-HHhC--CCC
Confidence            3678999999874 5566666653 555899999999988887642    2111000000 000111111 1112  259


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit  406 (597)
                      |+|+-.-.-          ...+..+.++|++| |.++..
T Consensus       263 Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence            999865321          13567888999999 998864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=83.52  E-value=2.7  Score=43.50  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=58.4

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|+|. |..+..+++. |...|+++|.++.-++.+++.-...-.....   ...-+...+. .+..  +.+|
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~~-~~~~--~g~D  263 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQD---YKKPIQEVLT-EMSN--GGVD  263 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGG---CSSCHHHHHH-HHTT--SCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccc---cchhHHHHHH-HHhC--CCCc
Confidence            3678999999875 5566666654 5448999999999888886431110000000   0000111011 1112  2599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit  406 (597)
                      +|+..-.-          ...+..+.++|++| |.++..
T Consensus       264 ~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          264 FSFEVIGR----------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             EEEECSCC----------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHhhcCCcEEEEe
Confidence            99765321          13567788899999 998864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=83.51  E-value=1.1  Score=45.88  Aligned_cols=97  Identities=11%  Similarity=-0.029  Sum_probs=56.8

Q ss_pred             CCCEEEEECCC--CChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSG--KGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCG--tG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+||-+|++  .|..+..++. .|. +|+++|.++..++.+++.    +........-...+...+. .+..  +.+|
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~-~~~~--~~~D  240 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSI----GGEVFIDFTKEKDIVGAVL-KATD--GGAH  240 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHT----TCCEEEETTTCSCHHHHHH-HHHT--SCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHc----CCceEEecCccHhHHHHHH-HHhC--CCCC
Confidence            67899999983  4666666554 464 999999998887766542    1110000000000000011 1111  1599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-..          ...++.+.++|++||.++..
T Consensus       241 ~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          241 GVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             EEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             EEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence            99876432          13678888999999998864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=83.49  E-value=1.8  Score=44.15  Aligned_cols=97  Identities=13%  Similarity=-0.006  Sum_probs=57.3

Q ss_pred             CCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+||-+|+  |.|..+..+++ .| .+|+++|.++..++.+++.+   +........-...+...+.. +..  +.+|
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~~---g~~~~~d~~~~~~~~~~~~~-~~~--~~~d  227 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTKF---GFDDAFNYKEESDLTAALKR-CFP--NGID  227 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTS---CCSEEEETTSCSCSHHHHHH-HCT--TCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHc---CCceEEecCCHHHHHHHHHH-HhC--CCCc
Confidence            6789999997  34666666555 45 48999999998887776332   11100000000011111111 111  3599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-           ..+..+.++|++||.++..
T Consensus       228 ~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          228 IYFENVGG-----------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            99876322           2577888999999999864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=83.47  E-value=1.5  Score=45.13  Aligned_cols=99  Identities=11%  Similarity=0.023  Sum_probs=56.1

Q ss_pred             CCCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||-+|+  |.|..+..++.....+|+++|.++..++.+++.    +....... ....+...+.+...  ...+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~~~~~~-~~~~~~~~~~~~~~--~~~~d  233 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAAAGFNY-KKEDFSEATLKFTK--GAGVN  233 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCSEEEET-TTSCHHHHHHHHTT--TSCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCcEEEec-CChHHHHHHHHHhc--CCCce
Confidence            36789999984  345556555543334899999999888877442    11100000 00000011111111  13599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|+..-.-           ..+..+.++|++||.++..-
T Consensus       234 ~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          234 LILDCIGG-----------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEESSCG-----------GGHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCc-----------hHHHHHHHhccCCCEEEEEe
Confidence            99876432           13566778999999998753

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=82.13  E-value=2.7  Score=43.47  Aligned_cols=100  Identities=14%  Similarity=0.034  Sum_probs=58.5

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.+++.-...-.....   ...-+...+.+ +..  +.+|
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~v~~-~~~--~g~D  267 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRE---LDKPVQDVITE-LTA--GGVD  267 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGG---CSSCHHHHHHH-HHT--SCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEcccc---ccchHHHHHHH-HhC--CCcc
Confidence            3678999999874 5566666654 5448999999999888876431110000000   00001100111 111  2599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit  406 (597)
                      +|+-.-.-          ...+..+.++|++| |.++..
T Consensus       268 vvid~~G~----------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          268 YSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             EEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHhhcCCCEEEEE
Confidence            99765321          23577888999999 998864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.05  E-value=1.4  Score=44.62  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=56.4

Q ss_pred             CCCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .++.+||-.|+  |.|..+..++. .|. +|+++|.++..++.+++.    +...... .....+...+.+...  ...+
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~~~~~-~~~~~~~~~~~~~~~--~~~~  210 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAWQVIN-YREEDLVERLKEITG--GKKV  210 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCSEEEE-TTTSCHHHHHHHHTT--TCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCCEEEE-CCCccHHHHHHHHhC--CCCc
Confidence            36789999994  34555555544 564 999999999888777652    1110000 000000011111111  1359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+..-.-           ..++.+.++|++||.++..
T Consensus       211 D~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          211 RVVYDSVGR-----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             EEEEECSCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             eEEEECCch-----------HHHHHHHHHhcCCCEEEEE
Confidence            999876431           3467788899999998864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=81.91  E-value=1.8  Score=44.99  Aligned_cols=101  Identities=18%  Similarity=0.106  Sum_probs=59.3

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.|++.-...-.....   ....+...+. .+..  +.+|
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~i~-~~~~--gg~D  265 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKD---HDKPIQEVIV-DLTD--GGVD  265 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGG---CSSCHHHHHH-HHTT--SCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEcccc---CchhHHHHHH-HhcC--CCCC
Confidence            3678899999874 6666666654 5558999999999888776431111000000   0000111111 1222  2599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit~  407 (597)
                      +|+-.-.-          ...+..+.++|++| |.++..-
T Consensus       266 ~vid~~g~----------~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          266 YSFECIGN----------VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             EEEECSCC----------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             EEEECCCC----------HHHHHHHHHHhhccCCEEEEEc
Confidence            99875321          24577888999997 9988743

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=81.02  E-value=1.2  Score=44.91  Aligned_cols=87  Identities=20%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+||=+|+|. |..+..+++. |. +|++++ ++.-++.+++.    +...        .+. + .+.+   .+.+|
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga~~--------v~~-d-~~~v---~~g~D  201 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GVRH--------LYR-E-PSQV---TQKYF  201 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TEEE--------EES-S-GGGC---CSCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CCCE--------EEc-C-HHHh---CCCcc
Confidence            3688999999964 6666666654 54 999999 98888887653    2111        221 2 2233   24699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|+-.-.-           ..+..+.++|++||.++...
T Consensus       202 vv~d~~g~-----------~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          202 AIFDAVNS-----------QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEECC------------------TTGGGEEEEEEEEEEC
T ss_pred             EEEECCCc-----------hhHHHHHHHhcCCCEEEEEe
Confidence            99764211           12256678999999998864

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=81.01  E-value=2.3  Score=43.94  Aligned_cols=46  Identities=17%  Similarity=0.300  Sum_probs=38.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCC--CEE-EEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGV--KHV-VFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V-~GIDiS~~mIe~A~er~~~  337 (597)
                      ...+||||.||.|++..-+...|+  ..+ .++|+++.+++..+.++..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~   57 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE   57 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC
Confidence            357899999999999999998884  566 7999999998888877654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=80.95  E-value=2.4  Score=43.05  Aligned_cols=97  Identities=19%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCCEEEEECC--CCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGS--GKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGC--GtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+||-.|+  |.|..+..++. .| .+|+++|.++..++.+++.    +....... ....+...+.+...  ...+|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~----g~~~~~d~-~~~~~~~~i~~~~~--~~~~d  216 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKL----GCHHTINY-STQDFAEVVREITG--GKGVD  216 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH----TCSEEEET-TTSCHHHHHHHHHT--TCCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc----CCCEEEEC-CCHHHHHHHHHHhC--CCCCe
Confidence            6789999995  45666666554 45 4999999999888777652    11100000 00000000111111  13599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|+..-.-           ..++.+.++|++||.++..-
T Consensus       217 ~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          217 VVYDSIGK-----------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEECSCT-----------TTHHHHHHTEEEEEEEEECC
T ss_pred             EEEECCcH-----------HHHHHHHHhhccCCEEEEEe
Confidence            99875332           34677788999999987653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=80.28  E-value=1  Score=46.00  Aligned_cols=96  Identities=14%  Similarity=0.073  Sum_probs=56.1

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++. ...-....     ...+...+.+ +.  ...+|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~-----~~~~~~~~~~-~~--~~g~D~  234 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPL-----EEDLLEVVRR-VT--GSGVEV  234 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTT-----TSCHHHHHHH-HH--SSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcC-----ccCHHHHHHH-hc--CCCCCE
Confidence            568899999854 5566666654 544899999998877666542 11000000     0001111111 11  135999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+..-.-          ...++.+.++|++||.++..
T Consensus       235 vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          235 LLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            9875321          13567788899999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	597
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-52
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-08
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-06
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	7e-06
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	5e-05
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	5e-05
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	7e-05
d1af7a2	193	c.66.1.8 (A:92-284) Chemotaxis receptor methyltran	8e-05
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	1e-04
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.001
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.001
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	0.002
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.003
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.004
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  178 bits (453), Expect = 1e-52
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 28/279 (10%)

Query: 260 SRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVV 319
           S+ + +RN NN+ K+ LI  +  R            VLD+G GKGGD+LK+   G+    
Sbjct: 1   SKTINIRNANNFIKACLIRLYTKRGD---------SVLDLGCGKGGDLLKYERAGIGEYY 51

Query: 320 FADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYS 379
             DIA VSI D + R   +KR+     ++    + +   ++ D   E D++S QF  HY+
Sbjct: 52  GVDIAEVSINDARVRARNMKRR-----FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYA 106

Query: 380 FESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTS 439
           F + +      +N A  L+PGG+F+ TVP  + I+ RY++       ND Y++  L    
Sbjct: 107 FSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ---GRMSNDFYKI-ELEKME 162

Query: 440 RPPPLFGAKYDFNL-EGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHA 498
             P     +Y F L + V NC E+ V F  +       GL  + ++ F  FY  + + + 
Sbjct: 163 DVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNP 222

Query: 499 GLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKV 537
              L +KM        +G L++ E E + +Y+V  F K+
Sbjct: 223 --ELSKKMG-------LGCLTREESEVVGIYEVVVFRKL 252

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 37/199 (18%)

Query: 242 VAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKS---SQPLGSPIKVLD 298
           VA  Y Q+      LR N    Y     +      +  +  RC +   +    S   ++D
Sbjct: 6   VASAY-QRFEPRAYLRNN----YAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLID 60

Query: 299 MGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE--------------------- 337
           +GSG     L       + +   D   V+ ++     +E                     
Sbjct: 61  IGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 120

Query: 338 ---LKRKEEARPYRRNVFSAELRSQ-----YEDKALELDLVSCQFCIHYSFESVQQARCM 389
                ++ + R   + V   ++             L  D +   FC+      +   +  
Sbjct: 121 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRA 180

Query: 390 LKNAAECLKPGGFFVGTVP 408
           L +    L+PGG  +    
Sbjct: 181 LDHITTLLRPGGHLLLIGA 199

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 34/210 (16%)

Query: 244 EHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGK 303
           +H+  +  + T    +           +    L   F               ++D+GSG 
Sbjct: 9   KHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGD------TLIDIGSGP 62

Query: 304 GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK------------------------ 339
               +       + +  +D    + E+ +   ++                          
Sbjct: 63  TIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEE 122

Query: 340 RKEEARPYRRNVFSAELRSQYEDKALE---LDLVSCQFCIHYSFESVQQARCMLKNAAEC 396
           ++E+ R   + V   ++              D V     +  +  S+   R  L N A  
Sbjct: 123 KEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASL 182

Query: 397 LKPGGFFV-GTVPDSNQIMARYRRHQSASF 425
           LKPGG  V          M   R     + 
Sbjct: 183 LKPGGHLVTTVTLRLPSYMVGKREFSCVAL 212

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 25/165 (15%)

Query: 258 KNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGD--MLKWINGGV 315
           KN+R +Y   +N+   S L++           +  P+ ++D G G G    +L  +    
Sbjct: 3   KNTRDLY---YNDDYVSFLVNTVW-------KITKPVHIVDYGCGYGYLGLVLMPLLPEG 52

Query: 316 KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFC 375
                 D     + + +  +         R    +    E  +   +   + D+  C   
Sbjct: 53  SKYTGIDSGETLLAEARELF---------RLLPYDSEFLEGDATEIELNDKYDIAICHAF 103

Query: 376 IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRH 420
           + +          ML+     +K GG  +   P     MA Y   
Sbjct: 104 LLHMTTPET----MLQKMIHSVKKGGKIICFEPHWISNMASYLLD 144

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 5e-05
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           +VLD+  G G D +  +  G   V   D +   ++         +++     +     + 
Sbjct: 59  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117

Query: 355 ELRSQYEDKALELDLVSCQF----CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410
               +        D V C       +  S     + R  LKN A  ++PGG  V    + 
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177

Query: 411 NQIMARYRRHQSASF 425
           + I++        + 
Sbjct: 178 DYILSTGCAPPGKNI 192

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 16/161 (9%)

Query: 277 IDEFLTRCKSSQPLGSPIKVLDMGSGKGG-------DMLKWINGGVKHVVFADIASVSIE 329
           +   + R   ++     IK+L +G G G         +     G   +    + ++  I 
Sbjct: 28  LPGIIGRIGDTKS---EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 84

Query: 330 DCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE--LDLVSCQFCIHYSFESVQQAR 387
             K    ++   E  +       S+E +S+  +K      D +     ++Y    V+   
Sbjct: 85  KYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY----VKDIP 140

Query: 388 CMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGND 428
             LK     L      +  V   +    +  +   + F  D
Sbjct: 141 ATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQD 181

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV 351
           +P + LD+G G G + L     G     +         D          + +A     N+
Sbjct: 30  APGRTLDLGCGNGRNSLYLAANGYDVTAW---------DKNPASMANLERIKAAEGLDNL 80

Query: 352 FSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
            +  +         E D +     +   F   Q    ++ N   C KPGG+ +
Sbjct: 81  QTDLVDLNTLTFDGEYDFILSTVVMM--FLEAQTIPGLIANMQRCTKPGGYNL 131

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 42/180 (23%)

Query: 288 QPLGSPIKVLDMGSGKGGD---------MLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338
           +      +V    +  G +             +  G   V  +DI +  +E  ++    L
Sbjct: 20  RRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRL 79

Query: 339 KRKEEARPYRRNVFSAELRSQYEDKAL-------------------------ELDLVSCQ 373
              +   P +   +       +E                               D + C+
Sbjct: 80  SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR 139

Query: 374 FCIHYSFESVQQARCMLKNAAECLKPGGF-FVGTVPDSNQIMARYRRHQSASFGNDVYQV 432
             + Y F+   Q   +L+     LKP G  F G   + + ++  +        G  VY +
Sbjct: 140 NVMIY-FDKTTQED-ILRRFVPLLKPDGLLFAGHSENFSNLVREFS-----LRGQTVYAL 192

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 258 KNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKH 317
           +  R  ++ +         +D+   R    + +    +VLD+ +  GG  +     G   
Sbjct: 111 QEGRAKFIVDMRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADE 170

Query: 318 VVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIH 377
           V+  D +  +IE  K   +    ++  +    + F    + Q + +  ++ ++     + 
Sbjct: 171 VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQ 230

Query: 378 YSFESVQQARC---MLKNAAECLKPGGFFV 404
           +  +     R    +       +K GG  V
Sbjct: 231 HEKDLKAGLRAYFNVNFAGLNLVKDGGILV 260

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 25/208 (12%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           KVLD+  G GG      + G + V           D         R+          F  
Sbjct: 40  KVLDLACGVGGFSFLLEDYGFEVVGV---------DISEDMIRKAREYAKSRESNVEFIV 90

Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414
               +   +    D V     I + FE ++  +   K     LKP G F+    D  +++
Sbjct: 91  GDARKLSFEDKTFDYVIFIDSIVH-FEPLELNQV-FKEVRRVLKPSGKFIMYFTDLRELL 148

Query: 415 ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAG 474
            R +   S   G   +  + + D      +   K + +             F +   + G
Sbjct: 149 PRLKE--SLVVGQKYWISKVIPDQEERTVVIEFKSEQD------------SFRVRFNVWG 194

Query: 475 EFGLKRILKENFRSFYLRKIKEHAGLNL 502
           + G++ + K  F      K+  ++ L +
Sbjct: 195 KTGVELLAKLYFTKEAEEKVGNYSYLTV 222

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 9/134 (6%)

Query: 277 IDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336
           +++ L +  SS  +    +VL    GK  DM      G  HVV A+++  ++E   T   
Sbjct: 5   VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERG 63

Query: 337 ELKRKEEARPYRR------NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCML 390
           E         ++        ++  +  +              +  +      +++     
Sbjct: 64  EQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQ- 122

Query: 391 KNAAECLKPGGFFV 404
            +    +      +
Sbjct: 123 -HLEALMPQACSGL 135

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 28/226 (12%)

Query: 214 DSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKN------SRIV---- 263
           D+ S  + Q  C   +   +    L +   +         T L ++      +  V    
Sbjct: 60  DTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPE 119

Query: 264 ----YMRNFNN---WTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN-GGV 315
               Y          T   L+ + +   K    +      +D+GSG G  +L+       
Sbjct: 120 KLNNYEPFSPEVYGETSFDLVAQMIDEIK----MTDDDLFVDLGSGVGQVVLQVAAATNC 175

Query: 316 KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLVSCQF 374
           KH    + A +  +  +T   E ++  +    +   ++ E      E+    +   S  F
Sbjct: 176 KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF 235

Query: 375 CIHYSFESVQQARCMLKNAAECLKPGGFFVGT---VPDSNQIMARY 417
             +++F      +   K     +K GG  V +    P + +I +R 
Sbjct: 236 VNNFAFGPEVDHQL--KERFANMKEGGRIVSSKPFAPLNFRINSRN 279

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 16/209 (7%)

Query: 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV 351
                LD+  G G                     +  E       +  +   A     N+
Sbjct: 37  VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL 96

Query: 352 FSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
                               C              +   K  +  LK GG F+  +    
Sbjct: 97  NINRKFDLIT----------CCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146

Query: 412 QIMARYRRHQSASFGNDV-YQVQCLFDTSRP---PPLFGAKYDFNLEGVVNCPEFLVYFP 467
           ++      +      ++V Y  +  F+          F    +F         E      
Sbjct: 147 KLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEE 206

Query: 468 LLERIAGEFGLKRILKENFRSFYLRKIKE 496
            +E+      L  +  +    +  +K+++
Sbjct: 207 DIEKYLKHGQLNIL--DKVDCYSNKKVEK 233

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 11/148 (7%)

Query: 261 RIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVF 320
           RI  +    +   +   +E          +    ++LD+GSG G  +  W          
Sbjct: 2   RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61

Query: 321 ADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSF 380
            D++S+     K R EEL   E       +        + +         +C        
Sbjct: 62  IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDV-------AACVGATWI-- 112

Query: 381 ESVQQARCMLKNAAECLKPGGFFVGTVP 408
                     +  A+ LKPGG  +   P
Sbjct: 113 --AGGFAGAEELLAQSLKPGGIMLIGEP 138

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 18/132 (13%)

Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
           +VLD+G+G  G      +  V+  +  D     +E   +  +E   +             
Sbjct: 19  RVLDIGAG-AGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77

Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV------GTVP 408
                +       D+++C++  H+        R  ++  A  LK  G F+         P
Sbjct: 78  FPDDSF-------DIITCRYAAHH----FSDVRKAVREVARVLKQDGRFLLVDHYAPEDP 126

Query: 409 DSNQIMARYRRH 420
             ++ +    R 
Sbjct: 127 VLDEFVNHLNRL 138

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 5/127 (3%)

Query: 290 LGSPIKVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY 347
           +     VL+ GSG GG    L    G    V+  ++     +  K  Y+  +   +    
Sbjct: 96  INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155

Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
                + +   +    A E                +      L      LK GG     V
Sbjct: 156 EEWPDNVDFIHKDISGATEDIK---SLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV 212

Query: 408 PDSNQIM 414
            +  Q++
Sbjct: 213 VNITQVI 219

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTR 334
            + +   +C+    L      +D+GSG G  +++     G       +I   + +    +
Sbjct: 204 FLSDVYQQCQ----LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259

Query: 335 YEELKRKEEARPYRRNVFSAELRSQYEDKALE---LDLVSCQFCIHYSFESVQQARCMLK 391
           YEELK++ +    R N     L+  + D       +         ++ F+     +   +
Sbjct: 260 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKV--E 317

Query: 392 NAAECLKPGGFFV 404
              +  K G   +
Sbjct: 318 KILQTAKVGCKII 330

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 285 KSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEA 344
           ++  P   P  +L++GS   GD    +      +   + +  +I   + R ++      +
Sbjct: 13  RAFTPFFRPGNLLELGSF-KGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHS 71

Query: 345 RPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
           R     +                        + +  + V   + +  +    L  GG   
Sbjct: 72  RFEDAQLPRRYDNIV------------LTHVLEHIDDPVALLKRINDD---WLAEGGRLF 116

Query: 405 GTVPDSNQIMARY 417
              P++N +  + 
Sbjct: 117 LVCPNANAVSRQI 129

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 15/118 (12%)

Query: 289 PLGSPIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP 346
           P+    K+L +G+  G      +        V   + A   + +      E +       
Sbjct: 71  PIKRDSKILYLGASAGT-TPSHVADIADKGIVYAIEYAPRIMRELLDACAERENII---- 125

Query: 347 YRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
                    +           ++V     I+       QA  ++KNA   LK GG+ +
Sbjct: 126 --------PILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	597
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.8
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.78
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.77
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.76
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.75
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.75
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.75
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.75
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.74
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.73
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.71
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.69
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.63
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.6
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.54
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.54
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.53
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.51
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.51
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.48
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.46
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.44
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.4
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.32
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.28
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.25
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.24
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.23
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.22
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.22
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.21
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.18
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.18
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.18
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.11
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.09
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.07
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.06
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.06
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.04
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.98
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.92
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.92
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.91
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.89
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.84
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.84
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.84
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.8
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.77
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.75
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.72
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.7
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.7
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.65
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.58
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.57
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.54
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.46
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.45
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.37
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.3
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.17
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.14
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.1
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.1
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.1
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.05
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.01
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.0
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.96
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.92
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.85
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.63
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.54
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.51
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.42
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.39
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.35
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.29
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.27
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.27
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.15
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.11
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.93
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.88
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.58
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.3
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.44
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.3
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.08
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.9
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.5
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.47
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.25
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.16
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.12
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	93.95
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.56
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	93.06
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.83
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.68
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.47
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.46
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.19
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.15
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.05
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.58
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.34
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.3
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.19
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	90.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.04
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.59
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	88.02
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.0
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	87.87
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.21
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.33
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.08
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.89
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	80.4

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=100.00  E-value=1.6e-41  Score=338.81  Aligned_cols=251  Identities=32%  Similarity=0.547  Sum_probs=212.8

Q ss_pred             chhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        260 SRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       260 S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      |++..+|+||||||+.||..+.+         ++.+|||||||+|+++.+|++.+..+|+|+|+|+.||+.|++++...+
T Consensus         1 ~~~~~~r~~~N~vK~~lI~~~~~---------~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~   71 (252)
T d1ri5a_           1 SKTINIRNANNFIKACLIRLYTK---------RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK   71 (252)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHCC---------TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC
T ss_pred             CCccHHHHHHHHHHHHHHHHhCC---------CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC
Confidence            46788999999999999999876         678999999999999999999887899999999999999999987765


Q ss_pred             hhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        340 RKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       340 ~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      .....     .+...|.........++||+|+|++++||+|.+.+++..+|++++++|||||+|++++++.+.+...+..
T Consensus        72 ~~~~v-----~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~  146 (252)
T d1ri5a_          72 RRFKV-----FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ  146 (252)
T ss_dssp             CSSEE-----EEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHH
T ss_pred             CCcce-----EEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHh
Confidence            44322     1344443222222345799999999999999999999999999999999999999999999999887765


Q ss_pred             hccCccCCceEEEEecCCCCCCCCCcccceeeeccccc-cccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccc
Q psy17742        420 HQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-NCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHA  498 (597)
Q Consensus       420 ~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~V-n~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~~~  498 (597)
                         ..+++.+|.+.+... .......+..|.|++.+.+ +++||+++++.|.++++++||++++..+|.+||++..+.++
T Consensus       147 ---~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~~~~~~~~~~~  222 (252)
T d1ri5a_         147 ---GRMSNDFYKIELEKM-EDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNP  222 (252)
T ss_dssp             ---TCCBCSSEEEECCCC-SSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHHTCH
T ss_pred             ---cccCCceEEEecccc-cCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecHHHHHHHHhhhCH
Confidence               357888999888663 2233456788999998887 79999999999999999999999999999999998887777


Q ss_pred             chHHHHHHhhhccCCcccCCCHHHHHHHHhhceeEEEEc
Q psy17742        499 GLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKV  537 (597)
Q Consensus       499 ~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~FvF~K~  537 (597)
                        .+..+|.       .+.|+++|||+++||++|||+|+
T Consensus       223 --~~~~~~~-------~~~l~~~e~e~~~ly~~fiF~K~  252 (252)
T d1ri5a_         223 --ELSKKMG-------LGCLTREESEVVGIYEVVVFRKL  252 (252)
T ss_dssp             --HHHHSSS-------CCCCCHHHHHHHTTEEEEEEEEC
T ss_pred             --HHHHhcC-------CCcCCHHHHHHHHhhhEEEEEEC
Confidence              6777663       46799999999999999999996

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=3.3e-19  Score=172.19  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+..+..      +...+ ...++.+.++||+|+
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~~i~------~~~~d-~~~l~~~~~~fD~v~   86 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVE------YVQGD-AEQMPFTDERFHIVT   86 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEECC-C-CCCSCTTCEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccccccccc------ccccc-ccccccccccccccc
Confidence            67899999999999999999887 59999999999999999988776543221      33333 334555567899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |.+++||+    +++..+|++++++|||||+|++..++
T Consensus        87 ~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          87 CRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccc----CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99999998    78889999999999999999986543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.80  E-value=5.9e-19  Score=173.12  Aligned_cols=176  Identities=14%  Similarity=0.146  Sum_probs=117.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.|. +|+|+|+|+.||+.|+++....+....       ++..++.. ++. .++||+|+
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~-------~~~~d~~~-~~~-~~~fD~i~  106 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPR-------LACQDISN-LNI-NRKFDLIT  106 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCE-------EECCCGGG-CCC-SCCEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccce-------eeccchhh-hcc-cccccccc
Confidence            457999999999999999999885 999999999999999998876554321       44444432 333 25799999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceE---EEEecCCCCCCCCCccc
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVY---QVQCLFDTSRPPPLFGA  447 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy---~I~F~~~~~d~~p~fG~  447 (597)
                      |.+ +++|+ .+.+++.++|++++++|||||.|++.+.+...+...+.......-...+.   ...+...      ..-.
T Consensus       107 ~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  179 (246)
T d1y8ca_         107 CCLDSTNYI-IDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDD------LVSM  179 (246)
T ss_dssp             ECTTGGGGC-CSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETT------EEEE
T ss_pred             eeeeeeecc-CCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCc------ceeE
Confidence            874 57775 67889999999999999999999999988866543322110000001111   1111110      0000


Q ss_pred             ceeeecccc-----c--cccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742        448 KYDFNLEGV-----V--NCPEFLVYFPLLERIAGEFGLKRILKE  484 (597)
Q Consensus       448 ~Y~F~L~d~-----V--n~pEYlv~~e~L~~La~eaGfelV~~~  484 (597)
                      ...+.+.+.     .  ..+++.++.++++++++++||+++...
T Consensus       180 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~  223 (246)
T d1y8ca_         180 YISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKV  223 (246)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred             EEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEE
Confidence            111111110     0  135677899999999999999988654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.78  E-value=8.8e-18  Score=168.45  Aligned_cols=160  Identities=17%  Similarity=0.104  Sum_probs=113.6

Q ss_pred             CCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       289 ~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ...++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+...+..     +...+ ...++.+.++||
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~-----~~~~d-~~~l~~~~~sfD  137 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNIT-----VKYGS-FLEIPCEDNSYD  137 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEE-----EEECC-TTSCSSCTTCEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccc-----ccccc-cccccccccccc
Confidence            345789999999999999999887533589999999999999999988776654331     33333 234555567899


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccc
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK  448 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~  448 (597)
                      +|+|..++||+    +++..+|+++.++|||||+|+++.+......           ..               ..+...
T Consensus       138 ~V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------~~---------------~~~~~~  187 (282)
T d2o57a1         138 FIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDPMKEDGI-----------DK---------------SSIQPI  187 (282)
T ss_dssp             EEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEECTTC-----------CG---------------GGGHHH
T ss_pred             hhhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEEEeecCCCC-----------ch---------------hHHHHH
Confidence            99999999998    6778999999999999999999764321000           00               000000


Q ss_pred             eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHH
Q psy17742        449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFY  490 (597)
Q Consensus       449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~  490 (597)
                      +     +... -..+.+.+.+.++++++||+.+........+
T Consensus       188 ~-----~~~~-~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~  223 (282)
T d2o57a1         188 L-----DRIK-LHDMGSLGLYRSLAKECGLVTLRTFSRPDSL  223 (282)
T ss_dssp             H-----HHHT-CSSCCCHHHHHHHHHHTTEEEEEEEECHHHH
T ss_pred             H-----HHhc-cCCCCCHHHHHHHHHHcCCceEEEEECcHhH
Confidence            0     0000 0124567889999999999999888665443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=2.2e-18  Score=167.98  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+..+..      +...+. ..++.++++||+|
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~------~~~~d~-~~~~~~~~~fD~v   86 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVR------FQQGTA-ESLPFPDDSFDII   86 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEE------EEECBT-TBCCSCTTCEEEE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccc------cccccc-cccccccccccee
Confidence            378999999999999999999887 59999999999999999998776543321      444443 3456566789999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|.+++||+    +++..+|++++++|||||+++++..
T Consensus        87 ~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          87 TCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             EEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeeceeecc----cCHHHHHHHHHHeeCCCcEEEEEEc
Confidence            999999998    7789999999999999999998643

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.9e-18  Score=163.99  Aligned_cols=146  Identities=19%  Similarity=0.201  Sum_probs=108.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+..+|+|||+|+.||+.|++++...+.....      ++..++. .++...++||+|+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~------f~~~d~~-~~~~~~~~fD~I~  132 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRN------YFCCGLQ-DFTPEPDSYDVIW  132 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEE------EEECCGG-GCCCCSSCEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccc------ccccccc-ccccccccccccc
Confidence            56899999999999999887666679999999999999999998776544321      4555443 3444457899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      +.+++||+  +.++...+|++++++|||||.|++..+...               +..   .+..        .+     
T Consensus       133 ~~~~l~h~--~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~---------------~~~---~~~~--------~~-----  179 (222)
T d2ex4a1         133 IQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ---------------EGV---ILDD--------VD-----  179 (222)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEBS---------------SSE---EEET--------TT-----
T ss_pred             cccccccc--hhhhhhhHHHHHHHhcCCcceEEEEEcccc---------------ccc---cccc--------CC-----
Confidence            99999997  445667899999999999999999753221               000   0111        00     


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                              ..+..+.+.+.++++++||++++...
T Consensus       180 --------~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         180 --------SSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             --------TEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             --------ceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence                    11234678899999999999998653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=170.37  Aligned_cols=177  Identities=16%  Similarity=0.096  Sum_probs=118.0

Q ss_pred             hhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccc
Q psy17742        266 RNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR  345 (597)
Q Consensus       266 R~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~  345 (597)
                      +.+.+|+.+.+.+.+..      ...++.+|||||||+|.++..++..+..+|+|+|+|+.||+.|++++..........
T Consensus        31 ~~~~~~~~~~~~~~~~~------~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~  104 (257)
T d2a14a1          31 AEMLKFNLECLHKTFGP------GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWT  104 (257)
T ss_dssp             HHHHHHHHHHHHHHHST------TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCH
T ss_pred             HHHHHHHHHHHHHHhcc------cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhh
Confidence            44456655555444322      122568999999999999887777776689999999999999999876543221100


Q ss_pred             cc------------------------ccceeehhh-hc--cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhcc
Q psy17742        346 PY------------------------RRNVFSAEL-RS--QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLK  398 (597)
Q Consensus       346 ~~------------------------~~d~F~~dl-~e--~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLK  398 (597)
                      ..                        ......... .+  ..+...++||+|++.+++||++...+++..++++++++||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk  184 (257)
T d2a14a1         105 PAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK  184 (257)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE
T ss_pred             hHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC
Confidence            00                        000000000 00  1123346799999999999998788899999999999999


Q ss_pred             CCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCC
Q psy17742        399 PGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGL  478 (597)
Q Consensus       399 PGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGf  478 (597)
                      |||+|++..+..                ...|...  .          .          ..+.+.++.+.++++++++||
T Consensus       185 pGG~li~~~~~~----------------~~~~~~~--~----------~----------~~~~~~~~~~~~~~~l~~aGf  226 (257)
T d2a14a1         185 PGGHLVTTVTLR----------------LPSYMVG--K----------R----------EFSCVALEKGEVEQAVLDAGF  226 (257)
T ss_dssp             EEEEEEEEEESS----------------CCEEEET--T----------E----------EEECCCCCHHHHHHHHHHTTE
T ss_pred             CCcEEEEEEecc----------------cccceec--c----------c----------cccccCCCHHHHHHHHHHCCC
Confidence            999999976532                1111110  0          0          011245788999999999999


Q ss_pred             eEEEEEec
Q psy17742        479 KRILKENF  486 (597)
Q Consensus       479 elV~~~~F  486 (597)
                      ++++...+
T Consensus       227 ~v~~~~~~  234 (257)
T d2a14a1         227 DIEQLLHS  234 (257)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99887543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=5.2e-18  Score=165.64  Aligned_cols=108  Identities=27%  Similarity=0.364  Sum_probs=86.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..+++.|. +|+|||+|+.||+.|+++....+...       .+...++ ..++.+ ++||+|+
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i-------~~~~~d~-~~l~~~-~~fD~I~  110 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKI-------EFLQGDV-LEIAFK-NEFDAVT  110 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCC-------EEEESCG-GGCCCC-SCEEEEE
T ss_pred             CCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccc-------hheehhh-hhcccc-cccchHh
Confidence            567999999999999999999885 89999999999999999987654422       1344433 345544 4799999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      |.+ +++|+  +.+++..+|++++++|||||+|++.+++..
T Consensus       111 ~~~~~~~~~--~~~~~~~~L~~~~~~LkpgG~lii~~~~~~  149 (251)
T d1wzna1         111 MFFSTIMYF--DEEDLRKLFSKVAEALKPGGVFITDFPCWF  149 (251)
T ss_dssp             ECSSGGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEC--
T ss_pred             hhhhhhhcC--ChHHHHHHHHHHHHHcCCCcEEEEEeccch
Confidence            975 46664  667889999999999999999999988754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.9e-18  Score=167.28  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=86.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++....            ....+ ...++.+.++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~------------~~~~~-~~~l~~~~~~fD~ii  107 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKN------------VVEAK-AEDLPFPSGAFEAVL  107 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSC------------EEECC-TTSCCSCTTCEEEEE
T ss_pred             CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccc------------ccccc-cccccccccccccee
Confidence            468999999999999999998875 8999999999999999864321            22222 234555567899999


Q ss_pred             Ecc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742        372 CQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY  417 (597)
Q Consensus       372 ~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l  417 (597)
                      |.+ ++||+    +++..+|+++.++|||||+|++++++...+....
T Consensus       108 ~~~~~~~~~----~d~~~~l~~i~r~Lk~gG~~ii~~~~~~~~~~~~  150 (246)
T d2avna1         108 ALGDVLSYV----ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQM  150 (246)
T ss_dssp             ECSSHHHHC----SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHH
T ss_pred             eecchhhhh----hhHHHHHHHHHhhcCcCcEEEEEECCHHHHHHHH
Confidence            864 68887    6778899999999999999999999887665543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.75  E-value=3.9e-18  Score=165.76  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=110.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.... .         .++..++. .++. .++||+|+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~~-~---------~~~~~~~~-~~~~-~~~fD~I~   86 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDG-I---------TYIHSRFE-DAQL-PRRYDNIV   86 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSC-E---------EEEESCGG-GCCC-SSCEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccccc-c---------cccccccc-cccc-cccccccc
Confidence            356899999999999999988774 8999999999999999875431 1         13333332 3333 35799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHH-HhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAA-ECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD  450 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~-rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~  450 (597)
                      |..+|||+    +++..+|++++ ++|||||++++++||...+...+.....  +..             ....+.. ..
T Consensus        87 ~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~--~~~-------------~~~~~~~-~~  146 (225)
T d2p7ia1          87 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMG--IIS-------------HNSAVTE-AE  146 (225)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTT--SSS-------------STTCCCH-HH
T ss_pred             ccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhh--hhh-------------hhhhcCc-cc
Confidence            99999998    77889999998 7899999999999998766555433211  000             0000000 00


Q ss_pred             eeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                      ..     ......++++.++++++++||+++....
T Consensus       147 ~~-----~~h~~~~~~~~l~~~l~~~Gf~i~~~~~  176 (225)
T d2p7ia1         147 FA-----HGHRCTYALDTLERDASRAGLQVTYRSG  176 (225)
T ss_dssp             HH-----TTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cc-----eeeeeccCHHHHHHHHHHCCCEEEEEEE
Confidence            00     0012356899999999999999997653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=4e-18  Score=162.85  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+....       ....+ ...++...++||+|+
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~-------~~~~d-~~~l~~~~~~fD~I~  107 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVE-------FIVGD-ARKLSFEDKTFDYVI  107 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCE-------EEECC-TTSCCSCTTCEEEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccc-------ccccc-cccccccCcCceEEE
Confidence            568999999999999999998874 899999999999999998876543221       23332 233555567899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM  414 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~  414 (597)
                      |.+++||+  +..++.++|+++.++|||||+|++.+++...+.
T Consensus       108 ~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~~  148 (226)
T d1ve3a1         108 FIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL  148 (226)
T ss_dssp             EESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHG
T ss_pred             EecchhhC--ChhHHHHHHHHHHHHcCcCcEEEEEEcCchhhh
Confidence            99999997  345788999999999999999999998865543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=1.5e-17  Score=158.42  Aligned_cols=141  Identities=14%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+.     .++|+|+|+.|++.|+++.    .         .++..+ ...++..+++||+|+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~----~---------~~~~~d-~~~l~~~~~~fD~I~   96 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRG----V---------FVLKGT-AENLPLKDESFDFAL   96 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTT----C---------EEEECB-TTBCCSCTTCEEEEE
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhcccccccc----c---------cccccc-ccccccccccccccc
Confidence            35689999999999987663     4689999999999998741    1         033333 234555567899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |.++|||+    +++..+|++++++|+|||.+++.+++.+.+.........  ...             ..  +.     
T Consensus        97 ~~~~l~h~----~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--~~~-------------~~--~~-----  150 (208)
T d1vlma_          97 MVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK--EKS-------------VF--YK-----  150 (208)
T ss_dssp             EESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTT--TC--------------CC--ST-----
T ss_pred             cccccccc----cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcc--ccc-------------cc--cc-----
Confidence            99999998    678899999999999999999999988655433222110  000             00  00     


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                              ..+.++.+++.++++++||+.+....
T Consensus       151 --------~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         151 --------NARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             --------TCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             --------cccCCCHHHHHHHHHHcCCeEEEEEE
Confidence                    01246788999999999999887553

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=1.8e-17  Score=160.68  Aligned_cols=107  Identities=16%  Similarity=0.265  Sum_probs=84.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING---GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|..+..+++.   ...+|+|+|+|+.||+.|+++....+......     ....+ ...++.  ..+|
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~-----~~~~d-~~~~~~--~~~d  110 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVE-----ILCND-IRHVEI--KNAS  110 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEE-----EECSC-TTTCCC--CSEE
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhh-----hccch-hhcccc--ccce
Confidence            6789999999999999888763   33599999999999999999987655443221     22222 223433  4699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|+|.+++||+  +.+++.++|++++++|||||.|++..+
T Consensus       111 ~i~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         111 MVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             EEEEESCGGGS--CGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEeeecccc--ChhhHHHHHHHHHHhCCCCceeecccc
Confidence            99999999997  567888999999999999999998753

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.4e-17  Score=164.50  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=106.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccc------------------------cc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR------------------------PY  347 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~------------------------~~  347 (597)
                      .+.+|||||||+|.+....+.....+|+|+|+|+.|++.|++++..........                        ..
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            578999999999988765555555699999999999999998765432110000                        00


Q ss_pred             ccceeehhhh-----ccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhcc
Q psy17742        348 RRNVFSAELR-----SQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQS  422 (597)
Q Consensus       348 ~~d~F~~dl~-----e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~  422 (597)
                      ....+..|+.     ...+...++||+|++.+++||++.+.+++..+|++++++|||||+|++..+-.            
T Consensus       134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~------------  201 (263)
T d2g72a1         134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE------------  201 (263)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES------------
T ss_pred             hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC------------
Confidence            0001111211     11223346799999999999998888899999999999999999999875421            


Q ss_pred             CccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        423 ASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       423 ~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                          ...|.+                      .....+-+.++.+.++++++++||+++..+.
T Consensus       202 ----~~~~~~----------------------~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~  238 (263)
T d2g72a1         202 ----ESWYLA----------------------GEARLTVVPVSEEEVREALVRSGYKVRDLRT  238 (263)
T ss_dssp             ----CCEEEE----------------------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ----Cccccc----------------------CCcccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence                111110                      0011122457899999999999999987653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.69  E-value=1.1e-16  Score=159.17  Aligned_cols=145  Identities=14%  Similarity=0.136  Sum_probs=105.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +..+|||+|||+|+.+..++..+...|+|||+|+.||+.|++++......        .++..++ +.++...++||+|+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--------~~~~~d~-~~~~~~~~~fD~I~  163 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVG--------KFILASM-ETATLPPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEE--------EEEESCG-GGCCCCSSCEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccc--------eeEEccc-cccccCCCccceEE
Confidence            56899999999999999877665568999999999999999886543321        1444443 34555557899999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF  451 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F  451 (597)
                      |++++||+  +.++...+|++++++|||||+|++..+....              . -+  .++..              
T Consensus       164 ~~~vl~hl--~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~--------------~-~~--~~d~~--------------  210 (254)
T d1xtpa_         164 IQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKENCSTG--------------D-RF--LVDKE--------------  210 (254)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEBC----------------C-CE--EEETT--------------
T ss_pred             eecccccc--chhhhHHHHHHHHHhcCCCcEEEEEecCCCC--------------C-cc--eeccc--------------
Confidence            99999998  5566789999999999999999986432210              0 00  00010              


Q ss_pred             eccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742        452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN  485 (597)
Q Consensus       452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~  485 (597)
                         +    .....+.+.++++++++||++++...
T Consensus       211 ---d----~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         211 ---D----SSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             ---T----TEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ---C----CceeCCHHHHHHHHHHcCCEEEEEEe
Confidence               0    01124678899999999999998764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.7e-16  Score=159.82  Aligned_cols=121  Identities=20%  Similarity=0.250  Sum_probs=89.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|.++..+++.|. +|+|+|+|+.||+.|+++...........  ..+.-..+   +...++. ..+||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFD--KWVIEEANWLTLDKDVPA-GDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHH--TCEEEECCGGGHHHHSCC-TTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccc--eeeeeeccccccccccCC-CCCce
Confidence            457999999999999999999985 89999999999999999876654321100  00011111   1122333 24799


Q ss_pred             EEEEcc-chhhhcc---CHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHH
Q psy17742        369 LVSCQF-CIHYSFE---SVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMAR  416 (597)
Q Consensus       369 vVi~~~-vLh~lFe---s~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~  416 (597)
                      +|+|.+ +++|+..   +..+...+|++++++|||||+|++++.+.+.+...
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~  183 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILST  183 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhhc
Confidence            999875 6888632   23578899999999999999999999998877643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=1e-15  Score=155.51  Aligned_cols=187  Identities=12%  Similarity=0.041  Sum_probs=122.0

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE  355 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d  355 (597)
                      .+..++.++.    .+++.+|||||||.|+++..++.....+|+|+++|+.+++.|+++....+.....      .+.. 
T Consensus        49 k~~~~~~~l~----l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v------~~~~-  117 (291)
T d1kpia_          49 KRKLALDKLN----LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK------EVRI-  117 (291)
T ss_dssp             HHHHHHHTTC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCE------EEEE-
T ss_pred             HHHHHHHhcC----CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhh------hhhh-
Confidence            4455555443    3478999999999999999887543359999999999999999998887665433      2221 


Q ss_pred             hhccCCCCCCceeEEEEccchhhhccC-----HHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhhhccCccCCce
Q psy17742        356 LRSQYEDKALELDLVSCQFCIHYSFES-----VQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRRHQSASFGNDV  429 (597)
Q Consensus       356 l~e~l~~~~~sFDvVi~~~vLh~lFes-----~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~~~~~~fgN~v  429 (597)
                        ...+...++||.|++..++.|+...     .+....+++.+.++|||||++++.+... +.....-.....  .....
T Consensus       118 --~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~--p~~~~  193 (291)
T d1kpia_         118 --QGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTS--PMSLL  193 (291)
T ss_dssp             --CCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCC--CHHHH
T ss_pred             --hcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCC--chhhc
Confidence              1122334679999999999887321     2468899999999999999999865432 111100000000  00000


Q ss_pred             EEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Q psy17742        430 YQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIK  495 (597)
Q Consensus       430 y~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~  495 (597)
                      -           ...|=.+|.|-       --++.+...+..+++++||+++.+.++...|..-..
T Consensus       194 ~-----------~~~fi~kyiFp-------gg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL~  241 (291)
T d1kpia_         194 R-----------FIKFILTEIFP-------GGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLN  241 (291)
T ss_dssp             H-----------HHHHHHHHTCT-------TCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHH
T ss_pred             c-----------cchHHHHHhcC-------CCCCCCHHHHHhhhcccccccceeeeccccHHHHHH
Confidence            0           00011111111       113567888999999999999999999988875543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=7.7e-16  Score=155.56  Aligned_cols=179  Identities=15%  Similarity=0.175  Sum_probs=119.8

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE  355 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d  355 (597)
                      .+..++.++.    .+++.+|||||||.|+++..+++....+|+|+|+|+.+++.|+++....+......     ....+
T Consensus        40 k~~~~~~~l~----l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~-----~~~~d  110 (280)
T d2fk8a1          40 KVDLNLDKLD----LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQ-----VLLQG  110 (280)
T ss_dssp             HHHHHHTTSC----CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEE-----EEESC
T ss_pred             HHHHHHHHcC----CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchh-----hhhhh
Confidence            3445555443    34789999999999999998876633599999999999999999988876643321     22222


Q ss_pred             hhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh---hHHHHHHhhh--ccCccCCceE
Q psy17742        356 LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS---NQIMARYRRH--QSASFGNDVY  430 (597)
Q Consensus       356 l~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~---~~i~~~l~~~--~~~~fgN~vy  430 (597)
                      . ..+   .++||.|++..+++|+  ...+...+|++++++|||||.+++.+...   .....+-...  .....     
T Consensus       111 ~-~~~---~~~fD~i~si~~~eh~--~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~-----  179 (280)
T d2fk8a1         111 W-EDF---AEPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARF-----  179 (280)
T ss_dssp             G-GGC---CCCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHH-----
T ss_pred             h-hhh---ccchhhhhHhhHHHHh--hhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccc-----
Confidence            1 122   3579999999999997  44577899999999999999999864321   1111000000  00000     


Q ss_pred             EEEecCCCCCCCCCcccceeeecccccccc-ccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742        431 QVQCLFDTSRPPPLFGAKYDFNLEGVVNCP-EFLVYFPLLERIAGEFGLKRILKENFRSFYLRKI  494 (597)
Q Consensus       431 ~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~p-EYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~  494 (597)
                                  ..|=.+|.        .| -++.+...+.++++++||+++...+|...|..-.
T Consensus       180 ------------~dfI~kyi--------fPgg~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL  224 (280)
T d2fk8a1         180 ------------IKFIVTEI--------FPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTL  224 (280)
T ss_dssp             ------------HHHHHHHT--------STTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHHHH
T ss_pred             ------------cchhhhhc--------cCCCcccchHhhhhhHHhhccccceeeecccCHHHHH
Confidence                        00001111        11 1356788999999999999999999988776543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=2.2e-15  Score=152.60  Aligned_cols=183  Identities=16%  Similarity=0.153  Sum_probs=119.9

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE  355 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d  355 (597)
                      ++..++.++.    .+++.+|||||||.|+.+..+++....+|+||++|+..++.|+++....+......     +...+
T Consensus        50 k~~~~~~~l~----l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~-----~~~~d  120 (285)
T d1kpga_          50 KIDLALGKLG----LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKR-----VLLAG  120 (285)
T ss_dssp             HHHHHHTTTT----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEE-----EEESC
T ss_pred             HHHHHHHHcC----CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhH-----HHHhh
Confidence            4455555443    44789999999999999998776533699999999999999999988776554331     22332


Q ss_pred             hhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh---hHHHHHHhhhccCccCCceEEE
Q psy17742        356 LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS---NQIMARYRRHQSASFGNDVYQV  432 (597)
Q Consensus       356 l~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~---~~i~~~l~~~~~~~fgN~vy~I  432 (597)
                      . ..+   +++||.|++..++.|+  .......+++++.++|||||.+++.+...   .....+...     . +..+. 
T Consensus       121 ~-~~~---~~~fD~i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~-----~-~~~~~-  187 (285)
T d1kpga_         121 W-EQF---DEPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLP-----M-SFTFA-  187 (285)
T ss_dssp             G-GGC---CCCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCS-----C-HHHHH-
T ss_pred             h-hcc---cccccceeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCC-----c-chhhh-
Confidence            2 222   2579999999999887  22456789999999999999999765432   111000000     0 00000 


Q ss_pred             EecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Q psy17742        433 QCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIK  495 (597)
Q Consensus       433 ~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~  495 (597)
                         .     ...|=.+|.|-       .-.+.+...+.++++++||+++...++...|..-..
T Consensus       188 ---~-----~~~fi~kyiFp-------gg~lPsl~~~~~~~e~agf~v~~~~~~~~hYarTl~  235 (285)
T d1kpga_         188 ---R-----FLKFIVTEIFP-------GGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLD  235 (285)
T ss_dssp             ---H-----HHHHHHHHTST-------TCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHH
T ss_pred             ---c-----hhhHHHHHhcc-------CCCCCChhhHHHHHHHhchhhcccccchhhHHHHHH
Confidence               0     00000111110       012457788999999999999999999988865543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=1.5e-16  Score=148.01  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccc------ccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR------PYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~------~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||+|||+|.++..+++.|+ +|+|+|+|+.||+.|+++.+.........      .....++..+.....+....
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~   98 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG   98 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred             CCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccccc
Confidence            688999999999999999999996 99999999999999999886543321100      00001222222211112224


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      .||+|++..++|++  ...+...++++++++|||||++++..
T Consensus        99 ~~D~i~~~~~l~~l--~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          99 HCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ceeEEEEEeeeEec--chhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            69999999999997  55678899999999999999998754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.5e-16  Score=153.33  Aligned_cols=107  Identities=22%  Similarity=0.280  Sum_probs=87.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....+...+..     +...+..+.++  .++||+|+
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~-----~~~~d~~~~~~--~~~fD~v~  105 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVH-----FIHNDAAGYVA--NEKCDVAA  105 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEESCCTTCCC--SSCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccch-----hhhhHHhhccc--cCceeEEE
Confidence            789999999999999999887533599999999999999999988777654331     33444333333  36799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |..+++|+    .++..+|++++++|||||+|++..+.
T Consensus       106 ~~~~~~~~----~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         106 CVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEehhhcc----CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            99999998    67889999999999999999997653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1.1e-15  Score=145.20  Aligned_cols=107  Identities=20%  Similarity=0.262  Sum_probs=85.0

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +.+|||||||+|.++..+++.|. +|+|+|+|+.||+.|+++....+.....      ....++....+  .++||+|+|
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~------~~~~d~~~~~~--~~~fD~I~~  101 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQ------TDLVDLNTLTF--DGEYDFILS  101 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEE------EEECCTTTCCC--CCCEEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchh------hhheecccccc--cccccEEEE
Confidence            46999999999999999999885 9999999999999999988766554221      22333322222  357999999


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ..++||+  +.++..++|++++++|+|||++++.+...
T Consensus       102 ~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         102 TVVMMFL--EAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             ESCGGGS--CTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             eeeeecC--CHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            9999997  44678899999999999999999876543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.5e-15  Score=148.74  Aligned_cols=155  Identities=16%  Similarity=0.133  Sum_probs=103.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc------C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh-----hcc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING------G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL-----RSQ  359 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~------g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl-----~e~  359 (597)
                      +..+|||||||+|.++..++..      + ...++|||+|+.|++.|+++...........   .++.....     ...
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVK---FAWHKETSSEYQSRML  116 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEE---EEEECSCHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccccccc---ccchhhhhhhhcchhc
Confidence            4568999999999987765432      1 2368999999999999999876543221110   00111111     011


Q ss_pred             CCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCC
Q psy17742        360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTS  439 (597)
Q Consensus       360 l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~  439 (597)
                      .+...++||+|+|.++|||+    +++..+|++++++|+|||+|++++++......++...-...+         ..+  
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~---------~~~--  181 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF---------PQD--  181 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGS---------CCC--
T ss_pred             ccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhc---------CCC--
Confidence            12234679999999999998    678899999999999999999999887655554432210001         000  


Q ss_pred             CCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEE
Q psy17742        440 RPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILK  483 (597)
Q Consensus       440 d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~  483 (597)
                                         .....++.+.+.+++++.||..+..
T Consensus       182 -------------------~~~~~~~~~~~~~~L~~~G~~~~~~  206 (280)
T d1jqea_         182 -------------------DLCQYITSDDLTQMLDNLGLKYECY  206 (280)
T ss_dssp             -------------------TTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             -------------------cccccCCHHHHHHHHHHCCCceEEE
Confidence                               0012356788999999999986643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8e-15  Score=142.53  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccc-----------cccccceeehhhhccC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEA-----------RPYRRNVFSAELRSQY  360 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~-----------~~~~~d~F~~dl~e~l  360 (597)
                      ++.+|||+|||+|.++..+++.|. +|+|||+|+.+|+.|+++..........           ......++..++....
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence            578999999999999999999996 9999999999999999987643221100           0000113344433322


Q ss_pred             CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +...+.||+|+...++|++  +.++...+++++.++|||||++++.+.+
T Consensus       124 ~~~~~~fd~i~~~~~l~~~--~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAI--NPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ccccCceeEEEEEEEEEec--cchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            3344679999999999998  5567889999999999999998887643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-15  Score=143.77  Aligned_cols=102  Identities=15%  Similarity=0.085  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFD  368 (597)
                      ++.+|||||||+|..+..+++.+..+|+|||+|+.|++.|+++.........       .+..+   ....++.  ++||
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~fD  123 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVI-------PLKGLWEDVAPTLPD--GHFD  123 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEE-------EEESCHHHHGGGSCT--TCEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccc-------ccccccccccccccc--cccc
Confidence            5789999999999999999887767899999999999999998766543322       12221   2233443  5699


Q ss_pred             EEEE-----ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSC-----QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~-----~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+.     .++++|+    .+...++++++++|||||+|++.
T Consensus       124 ~i~fD~~~~~~~~~~~----~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         124 GILYDTYPLSEETWHT----HQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EEEECCCCCBGGGTTT----HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ceeecccccccccccc----cCHHHHHHHHHHHcCCCcEEEEE
Confidence            9874     4455555    88999999999999999999874

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.53  E-value=1.3e-14  Score=145.66  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|.++..++...  ..+|+|+|+|+.|++.|+++....+....       +...+.. .++.. ++||+
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~-------f~~~d~~-~~~~~-~~fD~   97 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSE-------FLEGDAT-EIELN-DKYDI   97 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEE-------EEESCTT-TCCCS-SCEEE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccc-------ccccccc-ccccc-CCceE
Confidence            56899999999999998887642  25899999999999999998876554211       3333322 34433 46999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      |+|.+++||+    +++..+|++++++|||||+|++..|+..
T Consensus        98 v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~lii~~~~~~  135 (281)
T d2gh1a1          98 AICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHWI  135 (281)
T ss_dssp             EEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCHH
T ss_pred             EEEehhhhcC----CCHHHHHHHHHHHcCcCcEEEEEECCcc
Confidence            9999999998    6788999999999999999999988753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.51  E-value=3.7e-14  Score=140.02  Aligned_cols=106  Identities=18%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....+...+..     +...|..+..+   .+||+|
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~-----~~~~D~~~~~~---~~~D~v  150 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVD-----VVEGDFFEPLP---RKADAI  150 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEE-----EEECCTTSCCS---SCEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchh-----hccccchhhcc---cchhhe
Confidence            45799999999999999988764 358999998 678999999988776554432     33333333332   459999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..+|||+  +.++...+|++++++|||||+|++...
T Consensus       151 ~~~~vlh~~--~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         151 ILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             eeccccccC--CchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            999999996  456677999999999999999998643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=4.8e-14  Score=140.48  Aligned_cols=98  Identities=19%  Similarity=0.215  Sum_probs=79.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..+++.| .+|+|+|+|+.|++.|+++...++....       ++..++...++.  ++||+|+
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~~~-------~~~~d~~~~~~~--~~fD~V~  189 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRPR-------FLEGSLEAALPF--GPFDLLV  189 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCCCE-------EEESCHHHHGGG--CCEEEEE
T ss_pred             ccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCcee-------EEeccccccccc--cccchhh
Confidence            67899999999999999988888 4899999999999999999877665432       445544444443  5699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++...+       .+..++..+.++|||||+|+++
T Consensus       190 ani~~~-------~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         190 ANLYAE-------LHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             EECCHH-------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccccc-------cHHHHHHHHHHhcCCCcEEEEE
Confidence            986554       3467889999999999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=6.6e-14  Score=139.69  Aligned_cols=101  Identities=20%  Similarity=0.341  Sum_probs=80.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|.++..+++.+ ...++|+|+|+.||+.|+++....           .+...+ ...++..+++||+|
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~-----------~~~~~d-~~~l~~~~~sfD~v  151 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQV-----------TFCVAS-SHRLPFSDTSMDAI  151 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTS-----------EEEECC-TTSCSBCTTCEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccc-----------cceeee-hhhccCCCCCEEEE
Confidence            56899999999999999998774 358999999999999998865321           033333 33456666789999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      ++.+++|++           +++.|+|||||+|++++|+.+.+..
T Consensus       152 ~~~~~~~~~-----------~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         152 IRIYAPCKA-----------EELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             EEESCCCCH-----------HHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             eecCCHHHH-----------HHHHHHhCCCcEEEEEeeCCcchHH
Confidence            999888764           5689999999999999999876654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=1.6e-13  Score=134.69  Aligned_cols=106  Identities=16%  Similarity=0.090  Sum_probs=79.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .+++.+|||||||+|..+..+++.+ ...|+|+|+|+.|++.|+++........        .+..+...........+|
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~--------~i~~d~~~~~~~~~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENII--------PILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEE--------EEECCTTCGGGGTTTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccc--------eEEEeeccCcccccccce
Confidence            4578999999999999999988764 3589999999999999999866544322        222221222222224577


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++++...+++.    .+...+++++.+.|||||++++..
T Consensus       144 v~~i~~~~~~~----~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQP----NQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccch----HHHHHHHHHHHHhcccCceEEEEe
Confidence            77666667666    788999999999999999998875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.44  E-value=3.1e-13  Score=134.02  Aligned_cols=106  Identities=19%  Similarity=0.284  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++....+...+..     +...+....++   ..||+|
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~-----~~~~d~~~~~p---~~~D~v  151 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVT-----VAEGDFFKPLP---VTADVV  151 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEE-----EEECCTTSCCS---CCEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceee-----eeeeecccccc---ccchhh
Confidence            45789999999999999998764 348999998 788999999888766554431     22233333333   359999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++.++||+.  +.++...+|++++++|||||+|++...
T Consensus       152 ~~~~vLh~~--~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         152 LLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hcccccccc--CcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            999999997  556778999999999999999988653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=4.4e-13  Score=126.35  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=85.9

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .++.+|||||||+|.++..++..+ .+|+|+|+++.|++.|+++....+...+..     ++..+..+.+. ....||+|
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~-----~~~gda~~~~~-~~~~~D~v  104 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVT-----LMEGDAPEALC-KIPDIDIA  104 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEE-----EEESCHHHHHT-TSCCEEEE
T ss_pred             CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceE-----EEECchhhccc-ccCCcCEE
Confidence            378999999999999999988765 599999999999999999988877643321     44444332222 23469999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      ++....+++       ..+++.+.++|||||++++..+..+....
T Consensus       105 ~~~~~~~~~-------~~~~~~~~~~LkpgG~lvi~~~~~e~~~~  142 (186)
T d1l3ia_         105 VVGGSGGEL-------QEILRIIKDKLKPGGRIIVTAILLETKFE  142 (186)
T ss_dssp             EESCCTTCH-------HHHHHHHHHTEEEEEEEEEEECBHHHHHH
T ss_pred             EEeCccccc-------hHHHHHHHHHhCcCCEEEEEeeccccHHH
Confidence            998777554       46899999999999999998876654443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.40  E-value=1.3e-12  Score=123.85  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=84.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|++++...+.....    ..+...+..+.++.  ++||+|+
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~----i~~~~~d~~~~~~~--~~fD~Ii  124 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYD----IRVVHSDLYENVKD--RKYNKII  124 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSC----EEEEECSTTTTCTT--SCEEEEE
T ss_pred             CCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccce----EEEEEcchhhhhcc--CCceEEE
Confidence            67899999999999999888766 59999999999999999998776554321    01334444444443  5799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |..++|+.   .+....+++++.++|||||.+++.+...
T Consensus       125 ~~~p~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         125 TNPPIRAG---KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             ECCCSTTC---HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             EcccEEec---chhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            99888775   2446789999999999999998866544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.32  E-value=3.3e-12  Score=123.26  Aligned_cols=106  Identities=20%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      ..|+.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++....+.....      ................+|
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i------~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPL------LFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEE------CSCTTCGGGTTTTCCCEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEE------EeeccCccccccccceEE
Confidence            457899999999999999988864 3358999999999999999987665432111      111111111111122355


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|++.  +++.    .+...++++++++|||||++++..
T Consensus       128 ~v~~~--~~~~----~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         128 LIYQD--IAQK----NQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEC--CCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEec--ccCh----hhHHHHHHHHHHHhccCCeEEEEE
Confidence            55443  4343    677899999999999999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=8.1e-12  Score=127.72  Aligned_cols=105  Identities=21%  Similarity=0.209  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++++|||||||+|.++..+++.|..+|+|+|.|+ ++..|++.....+......     ++..++ ..++.+..+||+|+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~-----~i~~~~-~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKIT-----LLRGKL-EDVHLPFPKVDIII  110 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEE-----EEESCT-TTSCCSSSCEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccce-----EEEeeh-hhccCcccceeEEE
Confidence            5789999999999999999999988999999996 6788888877766554331     333332 23444446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      +....+++ ..+.....++..+.++|||||.++
T Consensus       111 se~~~~~~-~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFL-LYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceee-ccchhHHHHHHHHHhccCCCeEEE
Confidence            98777665 455678889999999999999985

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=1.5e-11  Score=118.64  Aligned_cols=101  Identities=17%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      +++.+|||||||+|..+..+++. + ...|+++|+++.+++.|++++......+..      ....+..+.++. .++||
T Consensus        74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~------~~~~d~~~~~~~-~~~fD  146 (213)
T d1dl5a1          74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVI------FVCGDGYYGVPE-FSPYD  146 (213)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEESCGGGCCGG-GCCEE
T ss_pred             cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccc------cccCchHHcccc-ccchh
Confidence            37899999999999999887753 2 348999999999999999998876654432      334444443433 35799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|++.++++++    +      .++.+.|||||+|++.+.
T Consensus       147 ~I~~~~~~~~~----p------~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         147 VIFVTVGVDEV----P------ETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             EEEECSBBSCC----C------HHHHHHEEEEEEEEEEBC
T ss_pred             hhhhhccHHHh----H------HHHHHhcCCCcEEEEEEC
Confidence            99999999886    2      245678999999998653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=1.4e-11  Score=118.39  Aligned_cols=112  Identities=13%  Similarity=0.165  Sum_probs=84.2

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCcee
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELD  368 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFD  368 (597)
                      +..|||||||+|..+..++... -..++|+|+++.+|..|.++....+..+..      ++..+   +...++.  +++|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~------~~~~Da~~l~~~~~~--~~~d  101 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVK------LLNIDADTLTDVFEP--GEVK  101 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEE------EECCCGGGHHHHCCT--TSCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCch------hcccchhhhhcccCc--hhhh
Confidence            4579999999999999988764 468999999999999999998887765432      33333   2233444  5699


Q ss_pred             EEEEccchhhhccCHHH-----HHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        369 LVSCQFCIHYSFESVQQ-----ARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d-----~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      .|++.+...|. .....     ...+|+.++++|||||.|++.+-+....
T Consensus       102 ~v~i~fp~P~~-k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~  150 (204)
T d2fcaa1         102 RVYLNFSDPWP-KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF  150 (204)
T ss_dssp             EEEEESCCCCC-SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH
T ss_pred             ccccccccccc-hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHH
Confidence            99999887664 11100     1479999999999999999998666443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.23  E-value=1.1e-11  Score=122.79  Aligned_cols=114  Identities=14%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ..++.+|||+|||+|.++..+++.  ...+|+++|+++.+++.|++++.......+.     .+...|+.+.++.  ..|
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv-----~~~~~Di~~~~~~--~~f  155 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-----RTSRSDIADFISD--QMY  155 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-----EEECSCTTTCCCS--CCE
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCce-----EEEEeeeeccccc--cee
Confidence            458899999999999999888764  2359999999999999999998765433222     1334444444444  469


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      |+|++.     +    .++..+|.++.++|||||+|++..|+.+.+.+.+..
T Consensus       156 D~V~ld-----~----p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~  198 (250)
T d1yb2a1         156 DAVIAD-----I----PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLS  198 (250)
T ss_dssp             EEEEEC-----C----SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             eeeeec-----C----CchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHH
Confidence            999864     2    344578999999999999999999998776655544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.1e-11  Score=126.30  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++++|||||||+|.++..+++.|..+|+|+|+|+. +..|++.....+...+..     ++..+ ...++.+.++||+|+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~-----~~~~~-~~~~~~~~~~~D~iv  105 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVT-----IIKGK-VEEVELPVEKVDIII  105 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEE-----EEESC-TTTCCCSSSCEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccc-----eEecc-HHHcccccceeEEEe
Confidence            57899999999999999999998889999999985 466666655555443321     33333 233444446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      +....+++ .++..+..++..+.++|||||.++
T Consensus       106 s~~~~~~l-~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         106 SEWMGYCL-FYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             ECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeee-ccHHHHHHHHHHHHhcCCCCeEEE
Confidence            98776665 445578899999999999999986

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=2.1e-11  Score=119.21  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=79.1

Q ss_pred             CCCCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc
Q psy17742        289 PLGSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       289 ~~~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ..+++.+|||||||+|..+..+++. | ...|+|+|+|+.|++.++++....+.....      .+.......+......
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i------~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPI------LGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEE------ECCTTCGGGGTTTCCC
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEE------EEECCCcccccccccc
Confidence            3458999999999999999998874 2 358999999999999999987654432211      2222222333333356


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|+|++.  +++.    ++...+++++.+.|||||++++.+.
T Consensus       144 vD~i~~d--~~~~----~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         144 VDVIFED--VAQP----TQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             EEEEEEC--CCST----THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEEE--cccc----chHHHHHHHHHHhcccCCeEEEEEE
Confidence            8988774  3333    6778899999999999999998753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-11  Score=123.54  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++++|||||||+|.++..+++.|..+|+|+|+|+.++. |++.....+.....     .+...++ ..++.+..+||+|+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i-----~~~~~~~-~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTI-----TLIKGKI-EEVHLPVEKVDVII  107 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTE-----EEEESCT-TTSCCSCSCEEEEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccc-----eEEEeeH-HHhcCccccceEEE
Confidence            57899999999999999999999889999999998865 44444444433322     1333332 33444446799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      +....|++ ..+..+..++..+.++|||||+++
T Consensus       108 se~~~~~~-~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         108 SEWMGYFL-LFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             ECCCBTTB-TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             Eeeeeeec-ccccccHHHHHHHHhcCCCCcEEe
Confidence            98777665 445678888999999999999986

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.18  E-value=7.8e-11  Score=113.16  Aligned_cols=114  Identities=15%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCcee
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELD  368 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFD  368 (597)
                      ...|||||||+|.++..++... -..++|+|+++.++..|.++....+..+..      ++..+   +...++.  .++|
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~------~~~~da~~l~~~~~~--~~~~  103 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIK------LLWVDGSDLTDYFED--GEID  103 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEE------EEECCSSCGGGTSCT--TCCS
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccce------eeecCHHHHhhhccC--Ccee
Confidence            4579999999999999988764 468999999999999999988877665432      33333   3333443  5699


Q ss_pred             EEEEccchhhhccCH--H---HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742        369 LVSCQFCIHYSFESV--Q---QARCMLKNAAECLKPGGFFVGTVPDSNQIMA  415 (597)
Q Consensus       369 vVi~~~vLh~lFes~--~---d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~  415 (597)
                      .|++.+.-.|. ...  .   -...+|+.+.++|||||.|++.|-+.+....
T Consensus       104 ~i~i~fPdPw~-K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~  154 (204)
T d1yzha1         104 RLYLNFSDPWP-KKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEY  154 (204)
T ss_dssp             EEEEESCCCCC-SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHH
T ss_pred             hhccccccccc-chhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHH
Confidence            99998775442 000  0   0157999999999999999999877655433

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=3.9e-11  Score=119.77  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .|+.+|||+|||+|.++..+++. + ..+|+++|+++++++.|++++..........   ..+...+..+ .+.+.+.||
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~n---v~~~~~d~~~-~~~~~~~fD  170 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN---WRLVVSDLAD-SELPDGSVD  170 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT---EEEECSCGGG-CCCCTTCEE
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCce---EEEEeccccc-ccccCCCcc
Confidence            47899999999999999998864 2 3599999999999999999887643211100   0122333322 223346799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      .|++.     +    +++..++.++.++|||||+|++.+|+.+.+...+..
T Consensus       171 aV~ld-----l----p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~  212 (264)
T d1i9ga_         171 RAVLD-----M----LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEA  212 (264)
T ss_dssp             EEEEE-----S----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             eEEEe-----c----CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHH
Confidence            99762     3    566789999999999999999999999877665544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=2.7e-11  Score=121.00  Aligned_cols=113  Identities=15%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+......     ....+....+..  ..||
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~-----~~~~d~~~~~~~--~~~D  174 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVT-----IKVRDISEGFDE--KDVD  174 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEE-----EECCCGGGCCSC--CSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcE-----EEeccccccccc--ccee
Confidence            47899999999999999998764 2 3599999999999999999988776543321     222233334433  4599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      .|+.     ++    +++..+|+++.++|||||+|++.+|..+.+.+.+..
T Consensus       175 ~V~~-----d~----p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~  216 (266)
T d1o54a_         175 ALFL-----DV----PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKK  216 (266)
T ss_dssp             EEEE-----CC----SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             eeEe-----cC----CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHH
Confidence            8854     33    566789999999999999999999998776554443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.11  E-value=1.3e-10  Score=106.13  Aligned_cols=109  Identities=15%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||+|||+|.++..++..|..+|+++|+++.+++.+++++...+...+..     ++..|....+....++||+|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~-----ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFT-----LLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEE-----EECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchh-----hhcccccccccccccccceeE
Confidence            478999999999999999888888899999999999999999988776655442     444443333333346799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCCh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn~  410 (597)
                      +--....     ......+..+.  ++|+|||.+++.....
T Consensus        89 ~DPPy~~-----~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          89 LDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             ECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             echhhcc-----chHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            8633211     34445556554  5799999999976543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=112.47  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=75.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||||||+|..+..+++. + ..+|+|+|+++++++.|++++.......... ....+...|....++. .++||+
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~-~~~~~~~gD~~~~~~~-~~~fD~  153 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS-GRVQLVVGDGRMGYAE-EAPYDA  153 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT-SSEEEEESCGGGCCGG-GCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccc-cceEEEEeecccccch-hhhhhh
Confidence            6899999999999988777653 2 3589999999999999999887654322100 0001223333333333 357999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      |++..+++++    +      ..+.+.|||||++++.+..
T Consensus       154 I~~~~~~~~i----p------~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         154 IHVGAAAPVV----P------QALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             EEECSBBSSC----C------HHHHHTEEEEEEEEEEESC
T ss_pred             hhhhcchhhc----C------HHHHhhcCCCcEEEEEEcc
Confidence            9999998876    2      2467899999999997643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.1e-10  Score=117.51  Aligned_cols=112  Identities=16%  Similarity=0.202  Sum_probs=74.3

Q ss_pred             CCCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccc---cccccceeehhhhc-cCCCCCC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEA---RPYRRNVFSAELRS-QYEDKAL  365 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~---~~~~~d~F~~dl~e-~l~~~~~  365 (597)
                      +++.+|||||||+|..+..++. .+..+++|||+|+.+++.|++...........   ......+...++.. ++.....
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            3688999999999999998765 45668999999999999999876654321110   00000122222111 1111111


Q ss_pred             ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ..|+|+++..+ +.    +++...|+++.+.|||||++|...
T Consensus       230 ~advi~~~~~~-f~----~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         230 NTSVIFVNNFA-FG----PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HCSEEEECCTT-TC----HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cceEEEEccee-cc----hHHHHHHHHHHHhCCCCcEEEEec
Confidence            25778776444 43    788899999999999999998753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=2.2e-10  Score=120.61  Aligned_cols=118  Identities=14%  Similarity=0.238  Sum_probs=79.6

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccc--------
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARP--------  346 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~--------  346 (597)
                      ++..++..+.    .+++.+|||||||.|..+..++.. +.++++|||+|+.|++.|+++....+.......        
T Consensus       204 ~i~~Il~~l~----Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         204 FLSDVYQQCQ----LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             HHHHHHHHTT----CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             HHHHHHHHhC----CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            3444555443    337899999999999999987754 556899999999999999998876543221000        


Q ss_pred             -cccceeehh-hhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        347 -YRRNVFSAE-LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       347 -~~~d~F~~d-l~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                       ..++++..+ ....+    ..+|+|++.. +++.    +++..+|+++.+.|||||+||..
T Consensus       280 ~~~~~f~~~~~~d~~~----~~adVV~inn-~~f~----~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         280 SLKKSFVDNNRVAELI----PQCDVILVNN-FLFD----EDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EESSCSTTCHHHHHHG----GGCSEEEECC-TTCC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeechhhcccccccc----ccceEEEEec-ccCc----hHHHHHHHHHHHhcCCCcEEEEe
Confidence             000011111 01111    2378888764 3344    78899999999999999999874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=1.3e-10  Score=118.77  Aligned_cols=117  Identities=17%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..++...+..+..++.+..  ...+.....+||+|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~--~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE--MEKLQKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh--hHHHHhccCCCCchh
Confidence            578999999999999999988887799999999999999999998887654432122222221  122333346799999


Q ss_pred             Eccch---hh--hccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        372 CQFCI---HY--SFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       372 ~~~vL---h~--lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +.-..   +-  .+........++..+.++|+|||+|+.++...
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            84321   10  01112356678999999999999999987655

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.04  E-value=3.7e-10  Score=110.00  Aligned_cols=97  Identities=19%  Similarity=0.114  Sum_probs=74.1

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .++.+|||||||+|..+..++..+ .+|+++|+++.+++.|+++......  .      .+...+....++. .++||+|
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~n--v------~~~~~d~~~g~~~-~~pfD~I  138 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNN--I------KLILGDGTLGYEE-EKPYDRV  138 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSS--E------EEEESCGGGCCGG-GCCEEEE
T ss_pred             cccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccc--c------ccccCchhhcchh-hhhHHHH
Confidence            378999999999999998888776 5999999999999999988664321  1      1344444444543 3579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..+++++    +      ..+.+.|||||+|++-+
T Consensus       139 iv~~a~~~i----p------~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         139 VVWATAPTL----L------CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EESSBBSSC----C------HHHHHTEEEEEEEEEEE
T ss_pred             Hhhcchhhh----h------HHHHHhcCCCCEEEEEE
Confidence            999888776    2      23567899999999865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=3.8e-10  Score=115.16  Aligned_cols=112  Identities=19%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh---hccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL---RSQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl---~e~l~~~~~sFD  368 (597)
                      ++.+|||+|||+|+++..++.. ..+|+++|+|+.+++.|++++..++.....      ++..+.   ...+....++||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~------~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVR------VLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEE------EEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcc------eeeccHHHHhhhhHhhhcCCC
Confidence            4689999999999999988754 469999999999999999998887764321      333332   222333346799


Q ss_pred             EEEEccch-----hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQFCI-----HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~~vL-----h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +|++.-.-     ..++........++..+.++|||||.|+.++.+.
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            99985321     0111122456788999999999999999987654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.5e-10  Score=112.60  Aligned_cols=119  Identities=20%  Similarity=0.239  Sum_probs=81.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhcccc-----ccccceeehhhhccC-CC
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEAR-----PYRRNVFSAELRSQY-ED  362 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~-----~~~~d~F~~dl~e~l-~~  362 (597)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++...+......     ....++...++.... ..
T Consensus        97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~  176 (324)
T d2b25a1          97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  176 (324)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence            47899999999999999998864 2 3589999999999999999987654321100     000012222222211 11


Q ss_pred             CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      ....||.|++-     +    +++..+|.++.++|||||+|++-+|+.+.+...+.
T Consensus       177 ~~~~fD~V~LD-----~----p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~  223 (324)
T d2b25a1         177 KSLTFDAVALD-----M----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLD  223 (324)
T ss_dssp             ----EEEEEEC-----S----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred             CCCCcceEeec-----C----cCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHH
Confidence            23569999752     2    34456899999999999999999999987766554

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.92  E-value=7.9e-10  Score=104.78  Aligned_cols=113  Identities=18%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             CCCEEEEECCCCChhHHH----HHhc----C-CCEEEEEeCChHHHHHHHHHH-Hhhhhhcc---------cc---cccc
Q psy17742        292 SPIKVLDMGSGKGGDMLK----WING----G-VKHVVFADIASVSIEDCKTRY-EELKRKEE---------AR---PYRR  349 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~----la~~----g-~~~V~GIDiS~~mIe~A~er~-~~~~~~~~---------~~---~~~~  349 (597)
                      +..+||++|||+|.-...    +...    + --+++|+|+|+.+|+.|++-. ........         ..   ...+
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            467999999999984322    2221    1 127999999999999998631 11100000         00   0000


Q ss_pred             -c----------ee-ehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        350 -N----------VF-SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       350 -d----------~F-~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                       .          .| ..++....+...++||+|+|.++|+|+  +.+...+++++++++|+|||+|++.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf--~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc--CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence             0          01 111111122234679999999999997  5677789999999999999998874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=2.9e-09  Score=106.50  Aligned_cols=110  Identities=14%  Similarity=0.234  Sum_probs=80.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|++++...+.....      ++..++...++.  .+||+|
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~------~~~~d~~~~~~~--~~fDlI  179 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIH------ILQSDWFSALAG--QQFAMI  179 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEE------EECCSTTGGGTT--CCEEEE
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccce------eeecccccccCC--CceeEE
Confidence            46789999999999999877643 469999999999999999998877664221      555555555543  479999


Q ss_pred             EEccch-------------hh-----hcc---CHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        371 SCQFCI-------------HY-----SFE---SVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       371 i~~~vL-------------h~-----lFe---s~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      +|+-..             .|     ++.   .......+++++.++|+|||.+++.+..
T Consensus       180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~  239 (274)
T d2b3ta1         180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  239 (274)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            997321             11     000   0134678999999999999999997643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.91  E-value=2.2e-09  Score=103.80  Aligned_cols=99  Identities=17%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ++.+|||||||+|..+.-++.. + .+|+++|+.+.+++.|++++...+..+..      +...+....++. .++||+|
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~------~~~gd~~~g~~~-~~pfD~I  149 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVH------VILGDGSKGFPP-KAPYDVI  149 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEE------EEESCGGGCCGG-GCCEEEE
T ss_pred             ccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeE------EEECccccCCcc-cCcceeE
Confidence            6889999999999999887765 4 57999999999999999999887765432      455555555544 3579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++..++..+    ++      .+...|||||++++.+-
T Consensus       150 iv~~a~~~i----p~------~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         150 IVTAGAPKI----PE------PLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             EECSBBSSC----CH------HHHHTEEEEEEEEEEEC
T ss_pred             EeecccccC----CH------HHHHhcCCCCEEEEEEc
Confidence            999988765    22      25568999999998653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.89  E-value=1.4e-09  Score=111.01  Aligned_cols=114  Identities=14%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhc---cCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRS---QYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e---~l~~~~~sF  367 (597)
                      ++.+|||++||+|+++..++..|..+|+++|+|+.+++.|++++..++... ...     +...|...   .+.....+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~-----~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQ-----LVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEE-----EEESCHHHHHHHHHHTTCCE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceE-----EEEccHHHHHHHHHhhcCCC
Confidence            478999999999999998888887799999999999999999987766532 111     33343221   222234579


Q ss_pred             eEEEEc---cch--hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        368 DLVSCQ---FCI--HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       368 DvVi~~---~vL--h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+|++-   ++-  ...+.-..+...+++.+.++|+|||+|++++.+.
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999984   110  1112223567789999999999999999988654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=8.1e-09  Score=96.85  Aligned_cols=107  Identities=11%  Similarity=0.023  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||++||+|.++...+..|+.+|++||.++.+++.+++++.........      ++..+....+.....+||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~------ii~~d~~~~l~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNAR------VVNSNAMSFLAQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEE------EECSCHHHHHSSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccccee------eeeecccccccccccccCEEE
Confidence            46899999999999999999999889999999999999999998765543322      444443333433456799999


Q ss_pred             EccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCC
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn  409 (597)
                      +--....     .....++..+.  .+|+++|++++....
T Consensus       117 ~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         117 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             EcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9644322     23345555554  469999999997643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=7.6e-09  Score=96.08  Aligned_cols=108  Identities=13%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh-hccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL-RSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl-~e~l~~~~~sFDvV  370 (597)
                      .+.+|||+|||+|.++..++..|. +++++|+++.+++.+++++...+...+..     ....+. .........+||+|
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~-----~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVV-----ALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEE-----CSCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccccee-----eeehhcccccccccCCcccee
Confidence            468999999999999999888885 89999999999999999988776654321     222221 11111223579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++.-.++.  ........++.  ..+|+|||++++..+.
T Consensus       115 f~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         115 FMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             EEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            98543322  11123333333  3579999999987643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=3.3e-09  Score=105.27  Aligned_cols=99  Identities=14%  Similarity=0.067  Sum_probs=76.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++..++...+..     .+..|..+..+  .+.||.|+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~-----~~~~D~~~~~~--~~~~D~Ii  179 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMS-----AYNMDNRDFPG--ENIADRIL  179 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEE-----EECSCTTTCCC--CSCEEEEE
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEE-----EEEcchHHhcc--CCCCCEEE
Confidence            689999999999999999888886799999999999999999998887765432     44554433332  25799998


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG  405 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi  405 (597)
                      +...- +       ...+|..+.++|+|||++.+
T Consensus       180 ~~~p~-~-------~~~~l~~a~~~l~~gG~lh~  205 (260)
T d2frna1         180 MGYVV-R-------THEFIPKALSIAKDGAIIHY  205 (260)
T ss_dssp             ECCCS-S-------GGGGHHHHHHHEEEEEEEEE
T ss_pred             ECCCC-c-------hHHHHHHHHhhcCCCCEEEE
Confidence            76321 1       23567788899999999865

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=1.6e-08  Score=95.94  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=84.1

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-  353 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-  353 (597)
                      |+.+.+..+..    .++..|||++||+|+++..+++. ...+|+|+|.++.|++.|++++...+.....  . ...|. 
T Consensus        11 ll~evi~~l~~----~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~--~-~~~f~~   83 (192)
T d1m6ya2          11 MVREVIEFLKP----EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSL--F-KVSYRE   83 (192)
T ss_dssp             THHHHHHHHCC----CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEE--E-ECCGGG
T ss_pred             HHHHHHHhhCC----CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccc--h-hHHHhh
Confidence            44444444432    36789999999999999998765 3468999999999999999998765433210  0 01111 


Q ss_pred             hh-hhccCCCCCCceeEEEEccchhh--h---ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        354 AE-LRSQYEDKALELDLVSCQFCIHY--S---FESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       354 ~d-l~e~l~~~~~sFDvVi~~~vLh~--l---Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .+ ....+..  ++||.|+.-..+..  +   -.........|..+.++|+|||.+++.+...
T Consensus        84 ~~~~~~~~~~--~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          84 ADFLLKTLGI--EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHHHHHHTTC--SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHHHHHHcCC--CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            11 1223332  46999987544311  0   0011456788999999999999999888776

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.77  E-value=1.4e-08  Score=98.52  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----C---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----G---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~  364 (597)
                      ++.+|||||||+|..+..+++.    |   ..+|+++|+++.+++.|+++........... ....+...|....++. .
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~-~  157 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP-N  157 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG-G
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEeccccccccc-c
Confidence            6899999999999988766543    2   2489999999999999998865543211000 0001334444444444 3


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      ++||+|++..++..+    ++      .+.+.|||||++++.+.
T Consensus       158 ~~fD~Iiv~~a~~~~----p~------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         158 APYNAIHVGAAAPDT----PT------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             CSEEEEEECSCBSSC----CH------HHHHTEEEEEEEEEEES
T ss_pred             cceeeEEEEeechhc----hH------HHHHhcCCCcEEEEEEe
Confidence            579999999998766    22      35789999999998654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.75  E-value=7.3e-09  Score=105.17  Aligned_cols=111  Identities=18%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc-ccccccceeehhhhcc---CCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE-ARPYRRNVFSAELRSQ---YEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~-~~~~~~d~F~~dl~e~---l~~~~~sF  367 (597)
                      ++.+|||++||+|.++..++..|. +|++||+|+.+|+.|++++..++.... ..     +...|....   ......+|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~-----~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIR-----WICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEE-----EECSCHHHHHHHHHHHTCCB
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEE-----EEeCCHHHhHHHHhhcCCCC
Confidence            468999999999999999988885 899999999999999999877655432 21     333332221   11223579


Q ss_pred             eEEEEc---cchh---hhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        368 DLVSCQ---FCIH---YSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       368 DvVi~~---~vLh---~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      |+|++-   |+..   -.+.-......++..+.++|+|||.+++.+.
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            999983   2211   0111234566788889999999997665543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.72  E-value=1.5e-08  Score=95.02  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFD  368 (597)
                      .+.+|||++||+|.++...+..|..+|++||.++.+++.+++++...+......     ++..|...   .+.....+||
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~-----i~~~D~~~~l~~~~~~~~~fD  115 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFE-----VRKMDANRALEQFYEEKLQFD  115 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEE-----EEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccc-----cccccchhhhhhhcccCCCcc
Confidence            578999999999999999999998899999999999999999987766544332     34444221   2222234799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPD  409 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn  409 (597)
                      +|++---.+.     ......|..+.  .+|+|||++++....
T Consensus       116 lIflDPPY~~-----~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         116 LVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             EEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             eEEechhhhh-----hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            9998643322     23445666664  469999999987653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.70  E-value=9.8e-08  Score=93.50  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ...+|||||||+|.++..+++.. ..+++..|+. ..++.+.       ...+..     +...+..+.+|    ..|+|
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~-------~~~ri~-----~~~gd~~~~~p----~~D~~  143 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIENAP-------PLSGIE-----HVGGDMFASVP----QGDAM  143 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCC-------CCTTEE-----EEECCTTTCCC----CEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhccC-------CCCCeE-----EecCCcccccc----cceEE
Confidence            45789999999999999988764 3488999984 3332211       111111     23333333443    36999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++..+||..  +.++...+|+++++.|+|||.+++.-
T Consensus       144 ~l~~vLh~~--~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         144 ILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEehhhhhC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999996  66788899999999999999998864

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=3.1e-08  Score=98.71  Aligned_cols=113  Identities=13%  Similarity=0.114  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +..+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...+..     +...++...++...++||+|+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~-----i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFF-----VRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEE-----EEESSTTGGGGGGTTTCCEEE
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeE-----EeecccccccccccCcccEEE
Confidence            346899999999998888776666799999999999999999988876654331     233444445554446899999


Q ss_pred             Eccc------------hhh----hccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742        372 CQFC------------IHY----SFESVQQARCMLKNAAECLKPGGFFVGTVPD  409 (597)
Q Consensus       372 ~~~v------------Lh~----lFes~~d~~~~L~~i~rlLKPGG~fIit~pn  409 (597)
                      ++--            .|.    ++...+.+.-+-+-+.++|+|||++++.+..
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~  238 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  238 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence            9721            000    0111111111112246789999999998753

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=3.9e-08  Score=93.54  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=58.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+.+|||+|||+|.++..++..|..+|+|+|+++.+++.|+++....+....       ++..+... +   .++||+|+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~-------~~~~d~~~-~---~~~fD~Vi  114 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK-------VFIGDVSE-F---NSRVDIVI  114 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEE-------EEESCGGG-C---CCCCSEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCce-------EEECchhh-h---CCcCcEEE
Confidence            4689999999999999988888877999999999999999998776554321       44443322 2   35699999


Q ss_pred             Eccchhh
Q psy17742        372 CQFCIHY  378 (597)
Q Consensus       372 ~~~vLh~  378 (597)
                      ++-.++.
T Consensus       115 ~nPP~~~  121 (201)
T d1wy7a1         115 MNPPFGS  121 (201)
T ss_dssp             ECCCCSS
T ss_pred             EcCcccc
Confidence            9865443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=1.3e-07  Score=90.87  Aligned_cols=105  Identities=12%  Similarity=0.117  Sum_probs=73.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCC--CCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYE--DKA  364 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~--~~~  364 (597)
                      ++.+|||||||+|..+..++..  ...+|+++|+++.+++.|++++...+...+..     +...+..+   .+.  ...
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~-----l~~Gd~~e~l~~l~~~~~~  130 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVT-----ILNGASQDLIPQLKKKYDV  130 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEE-----EEESCHHHHGGGHHHHSCC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccce-----eeeccccccccchhhcccc
Confidence            4579999999999999988864  23599999999999999999988877655432     22222111   111  123


Q ss_pred             CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      ++||+|++-..-.+     ......+.++.++|||||++++.
T Consensus       131 ~~~D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         131 DTLDMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             CCEEEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEES
T ss_pred             cccceeeecccccc-----cccHHHHHHHhCccCCCcEEEEe
Confidence            46999987532111     22334577788999999998874

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.5e-07  Score=90.82  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccC-CCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQY-EDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l-~~~~~  365 (597)
                      +..+|||||||+|.....++.. ...+++|+|+|+.+++.|+++....+...+..     .+..+    +...+ ....+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~  135 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIK-----VVKVPQKTLLMDALKEESEI  135 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-----EEECCTTCSSTTTSTTCCSC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCccee-----eeeeccHHhhhhhhhhcccC
Confidence            4579999999999988877654 23599999999999999999988876654431     22211    11111 22345


Q ss_pred             ceeEEEEccchh
Q psy17742        366 ELDLVSCQFCIH  377 (597)
Q Consensus       366 sFDvVi~~~vLh  377 (597)
                      +||+|+|+--++
T Consensus       136 ~fD~ivsNPPY~  147 (250)
T d2h00a1         136 IYDFCMCNPPFF  147 (250)
T ss_dssp             CBSEEEECCCCC
T ss_pred             ceeEEEecCccc
Confidence            799999986654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.54  E-value=6.4e-08  Score=92.09  Aligned_cols=70  Identities=21%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      .+++|||+|||+|.++..++..|..+|+|+|+++.+++.|+++....           .+...|+. .+   .++||+|+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~-----------~~~~~D~~-~l---~~~fD~Vi  112 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGV-----------NFMVADVS-EI---SGKYDTWI  112 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTS-----------EEEECCGG-GC---CCCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccc-----------cEEEEehh-hc---CCcceEEE
Confidence            47899999999999998888888789999999999999999875422           14444432 23   25799999


Q ss_pred             Eccch
Q psy17742        372 CQFCI  376 (597)
Q Consensus       372 ~~~vL  376 (597)
                      ++-.+
T Consensus       113 ~NPPf  117 (197)
T d1ne2a_         113 MNPPF  117 (197)
T ss_dssp             ECCCC
T ss_pred             eCccc
Confidence            98544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.7e-07  Score=87.95  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=76.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFD  368 (597)
                      +.++|||||||+|.-+..++..-  ..+++.+|+++...+.|++.+...+...+.....++.... +.+.+ ....++||
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~-l~~~~~~~~~~~fD  137 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET-LDELLAAGEAGTFD  137 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH-HHHHHHTTCTTCEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc-chhhhhhcccCCcc
Confidence            46899999999999999888641  3599999999999999999998877655432111111111 11111 11235799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                      +|+.-..       .......+..+.++|+|||.+++.-.
T Consensus       138 ~ifiD~d-------k~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         138 VAVVDAD-------KENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EEEECSC-------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEeCC-------HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            9988532       13445678888999999999999643

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.45  E-value=8.5e-07  Score=86.61  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=67.5

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ..+|||||||+|.++..+++.. ..++++.|+. ..++.+.       ...+..     +...|..+..+    .+|+++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~-------~~~rv~-----~~~gD~f~~~p----~aD~~~  143 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENLS-------GSNNLT-----YVGGDMFTSIP----NADAVL  143 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCC-------CBTTEE-----EEECCTTTCCC----CCSEEE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhCc-------ccCceE-----EEecCcccCCC----CCcEEE
Confidence            4689999999999999988764 3589999984 3343321       122221     22223333332    489999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCC---cEEEEE
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPG---GFFVGT  406 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPG---G~fIit  406 (597)
                      +..+||+.  +.++..++|+++++.|+||   |++++.
T Consensus       144 l~~vLHdw--~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         144 LKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEeecccC--ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            99999996  6678889999999999998   666664

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.37  E-value=1.2e-06  Score=81.53  Aligned_cols=110  Identities=18%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~sFDv  369 (597)
                      .+.+||||.||+|.+....+..|+.+|+.||.+..+++..+++....+......    .....+....  ......+||+
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~----~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQA----EVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTE----EEECSCHHHHTTSCCSSCCEEE
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccc----ccccccccccccccccCCcccE
Confidence            467999999999999999999999999999999999999999987765433210    0122221111  1222346999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHH--hccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAE--CLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~r--lLKPGG~fIit~pn~  410 (597)
                      |++---...     .....+|..+..  +|+++|++++.....
T Consensus       119 IFlDPPY~~-----~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         119 VFLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             EEECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EEechhHhh-----hhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            988644322     244566666654  799999999976543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=9.3e-07  Score=89.07  Aligned_cols=110  Identities=18%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             CCCEEEEECCCCChhHHHHHh----cC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN----GG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~----~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~  365 (597)
                      ++.+|||.|||+|.++..+..    .+  ..+++|+|+++.++..|+.+.........       .+..+.....+  ..
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~-------~~~~d~~~~~~--~~  187 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMT-------LLHQDGLANLL--VD  187 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCE-------EEESCTTSCCC--CC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhh-------hhccccccccc--cc
Confidence            567899999999999887643    22  23799999999999999887654433221       33333222222  35


Q ss_pred             ceeEEEEccchhhhcc--------------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        366 ELDLVSCQFCIHYSFE--------------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       366 sFDvVi~~~vLh~lFe--------------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +||+|+++-.+.....              .......++..+.++|+|||++++.+|+.
T Consensus       188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            7999999855432100              11123357999999999999999988865

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.22  E-value=3.5e-06  Score=81.81  Aligned_cols=97  Identities=20%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      ...+|||||||+|.++..+++.. ..++++.|+.+. ++.+..       ..+.     .....++.+.+|.    .|++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~~-------~~r~-----~~~~~d~~~~~P~----ad~~  143 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAPS-------YPGV-----EHVGGDMFVSIPK----ADAV  143 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCCC-------CTTE-----EEEECCTTTCCCC----CSCE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhccc-------CCce-----EEecccccccCCC----cceE
Confidence            35789999999999999988764 358999999653 222111       1111     1223333344443    5777


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +...++|..  +.++...+|+++++.|+|||.+++.-
T Consensus       144 ~l~~vlh~~--~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         144 FMKWICHDW--SDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             ECSSSSTTS--CHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEEEeecC--CHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            888888875  56788999999999999999988853

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=2e-06  Score=86.97  Aligned_cols=115  Identities=19%  Similarity=0.245  Sum_probs=74.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+||.||.|.|..+..+++.. ..+|++||+++.+++.|++.+............ ..+...|....+.....+||+|
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~r-v~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR-AVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTT-EEEEESCHHHHHHHCCCCEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCc-eEEEEchHHHHhhhcCCcccEE
Confidence            46899999999999999887664 579999999999999999987543221100000 0133333222232334579999


Q ss_pred             EEccchhhhccCH-H--HHHHHHHHHHHhccCCcEEEEEe
Q psy17742        371 SCQFCIHYSFESV-Q--QARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       371 i~~~vLh~lFes~-~--d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      ++-..=.+..... .  --..+++.++++|+|||+|+...
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            9643110000000 0  12579999999999999999854

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.14  E-value=1.3e-06  Score=86.88  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhh---------hccccccccceeehhhhccCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKR---------KEEARPYRRNVFSAELRSQYED  362 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~---------~~~~~~~~~d~F~~dl~e~l~~  362 (597)
                      .+.+||-||+|.|..+..+++.+..+|++|||++.+++.|++.+.....         ..+.     .+...|....+..
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv-----~i~~~Da~~~l~~  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA-----KLTIGDGFEFIKN  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSE-----EEEESCHHHHHHH
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCc-----eEEEChHHHHHhc
Confidence            4689999999999999988887777999999999999999986532211         1111     1333332222222


Q ss_pred             CCCceeEEEEccchhhhccCHHH--HHHHHHHHHHhccCCcEEEEEeC
Q psy17742        363 KALELDLVSCQFCIHYSFESVQQ--ARCMLKNAAECLKPGGFFVGTVP  408 (597)
Q Consensus       363 ~~~sFDvVi~~~vLh~lFes~~d--~~~~L~~i~rlLKPGG~fIit~p  408 (597)
                       .++||+|++-..-...  ....  -..+++.++++|+|||+|+....
T Consensus       147 -~~~yDvIi~D~~~~~~--~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         147 -NRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             -CCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -cCCCCEEEEeCCCCCC--CcccccCHHHHHhhHhhcCCCceEEEecC
Confidence             3579999874322110  0011  15799999999999999998653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=5.6e-06  Score=77.39  Aligned_cols=122  Identities=18%  Similarity=0.116  Sum_probs=79.2

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh-
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA-  354 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~-  354 (597)
                      |+.+.+..+..    .++..++|..||.|+++..+++.+ .+|+|+|..+.+++.|+++.... ....     ...|.. 
T Consensus         6 ll~Evl~~l~~----~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~~-~~~~-----~~~f~~~   74 (182)
T d1wg8a2           6 LYQEALDLLAV----RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLPG-LTVV-----QGNFRHL   74 (182)
T ss_dssp             THHHHHHHHTC----CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCTT-EEEE-----ESCGGGH
T ss_pred             HHHHHHHhcCC----CCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccccc-eeEe-----ehHHHHH
Confidence            44444444322    368899999999999999998876 59999999999999998753221 1100     001111 


Q ss_pred             h-hhccCCCCCCceeEEEEccchhhh-----ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        355 E-LRSQYEDKALELDLVSCQFCIHYS-----FESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       355 d-l~e~l~~~~~sFDvVi~~~vLh~l-----Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      + ....+..  +.+|.|+.-..+...     ..........|.....+|+|||.+++.+.+.
T Consensus        75 ~~~l~~~~~--~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          75 KRHLAALGV--ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HHHHHHTTC--SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHHHHHcCC--CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            0 1112222  469999885433111     0111245568899999999999999888877

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.10  E-value=5e-06  Score=80.32  Aligned_cols=104  Identities=12%  Similarity=0.032  Sum_probs=75.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh---hccC---CCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL---RSQY---EDK  363 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl---~e~l---~~~  363 (597)
                      +..+||+||+|+|.-+..++..  ...+++.+|+++...+.|++.+...+...+..     +...+.   ...+   ...
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~-----~~~g~a~~~L~~l~~~~~~  133 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKID-----FREGPALPVLDEMIKDEKN  133 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEE-----EEESCHHHHHHHHHHCGGG
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcccccee-----eeehHHHHHHHHHHhcccc
Confidence            4689999999999999888753  13599999999999999999998877665432     222221   1111   112


Q ss_pred             CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      .++||+|+.-..       .......++.+.++|+|||.+++.-
T Consensus       134 ~~~fD~iFiDa~-------k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         134 HGSYDFIFVDAD-------KDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             TTCBSEEEECSC-------STTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             CCceeEEEeccc-------hhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            357999988532       1345578888899999999999973

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=5.3e-06  Score=83.19  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+||-||.|.|..+..+++.. ..+|+++||++.+++.|++.+......... +. ..+...|....+....++||+|
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d-~r-v~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDD-PR-AEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGC-TT-EEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccC-CC-cEEEhhhHHHHHhcCCCCCCEE
Confidence            46899999999999999888764 678999999999999999876543221100 00 0133344333343344679999


Q ss_pred             EEccchhhhccCHH--HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQ--QARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~--d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++-..-... ....  --..+++.+++.|+|||+|+....++
T Consensus       167 i~D~~dp~~-~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         167 IIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCc-CchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            975322110 0000  12579999999999999999987664

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.9e-06  Score=83.01  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+||-||.|.|..+..+++. +..+++++||++.+++.|++.+......... +. ..+...|....+....++||+|
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d-~r-v~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSS-SK-LTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGC-TT-EEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCC-CC-ceEEEccHHHHHhcCCCCCCEE
Confidence            4589999999999999998876 4679999999999999999976543211100 00 0133333222332334579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++-..-.......---..+++.+++.|+|||+|++...+.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence            9853211100000112468999999999999999977554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=3.7e-05  Score=77.86  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=74.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC---CCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY---EDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l---~~~~~sFD  368 (597)
                      ++.+|||+.||.|.++..+++.+ .+|+|+|+++.+++.|+++...++..+..      ++..+....+   .....+||
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~------~~~~~~~~~~~~~~~~~~~~d  284 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVT------FYHENLEEDVTKQPWAKNGFD  284 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEECCTTSCCSSSGGGTTCCS
T ss_pred             CCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccce------eeecchhhhhhhhhhhhccCc
Confidence            56899999999999999998765 69999999999999999998877765432      3333322222   22235699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR  419 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~  419 (597)
                      +|+.--.=       .....+++.+.+. +|.-+++++ -|+..+...+..
T Consensus       285 ~vilDPPR-------~G~~~~~~~l~~~-~~~~ivYVS-Cnp~TlaRDl~~  326 (358)
T d1uwva2         285 KVLLDPAR-------AGAAGVMQQIIKL-EPIRIVYVS-CNPATLARDSEA  326 (358)
T ss_dssp             EEEECCCT-------TCCHHHHHHHHHH-CCSEEEEEE-SCHHHHHHHHHH
T ss_pred             eEEeCCCC-------ccHHHHHHHHHHc-CCCEEEEEe-CCHHHHHHHHHH
Confidence            99875221       1122355555543 666555554 567666655543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.00  E-value=6.3e-06  Score=83.19  Aligned_cols=117  Identities=16%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+||-||.|.|..+..+++.. ..+|+++||++.+++.|++.+......... +. ..+...|....+.....+||+|
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~d-pr-v~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSH-PK-LDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGC-TT-EEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCC-CC-eEEEEchHHHHHHhCCCCCCEE
Confidence            46799999999999999988754 579999999999999999876543211100 00 0122233222222334579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ++-..-.......---..+++.++++|+|||+|+....+.
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            9853211100000123578999999999999999976554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=5.6e-06  Score=82.09  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV  370 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV  370 (597)
                      .+.+||-||.|.|..+..+++. +..+++++||++.+++.|++.+......... +. ......|....+.....+||+|
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d-~r-~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDD-PR-VDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTS-TT-EEEEESCSHHHHHTCCSCEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccC-CC-eEEEechHHHHHhhcCCCCCEE
Confidence            4689999999999999998875 5679999999999999999976543221100 00 0133334222233334579999


Q ss_pred             EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      +.-..-.......=--..+++.++++|+|||+|+....++
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence            8743211100000012479999999999999999877554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.96  E-value=1.1e-05  Score=80.50  Aligned_cols=117  Identities=17%  Similarity=0.240  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDv  369 (597)
                      .+.+||=||-|.|..+..+++. +..+++++||++.+++.|++.+......... .. ...+..|....+. ...++||+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~-~r-~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYED-PR-VNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGS-TT-EEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccC-CC-cEEEEccHHHHHhhccccCccE
Confidence            4579999999999999998876 4578999999999999999976543221100 00 0133333222221 12347999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+.-..=.......---..+++.+++.|+|||+|+....+.
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            99742210000000012579999999999999999987665

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.92  E-value=6.1e-06  Score=77.22  Aligned_cols=102  Identities=19%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+|||.|||+|.++..+.+.  ....++|+|+++.++..++..               .....+.....  ...+||+
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~fd~   81 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA---------------EGILADFLLWE--PGEAFDL   81 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTE---------------EEEESCGGGCC--CSSCEEE
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccc---------------eeeeeehhccc--cccccce
Confidence            5789999999999998877643  235799999998765433210               12222211111  2246999


Q ss_pred             EEEccchhhhcc-------------------------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        370 VSCQFCIHYSFE-------------------------SVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       370 Vi~~~vLh~lFe-------------------------s~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      |+++..+.....                         ...-...++..+.+.|+|||++.+.+|+.
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            999755322100                         00113467889999999999999988765

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=7.4e-05  Score=70.94  Aligned_cols=99  Identities=14%  Similarity=0.099  Sum_probs=72.5

Q ss_pred             CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +.+|||||+|.|.....++-.. -.+++.+|.+..-+...+.-....+..+..      .+.... +.+.. ..+||+|+
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~------v~~~R~-E~~~~-~~~fD~V~  137 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIE------PVQSRV-EEFPS-EPPFDGVI  137 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEE------EEECCT-TTSCC-CSCEEEEE
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCccee------eeccch-hhhcc-ccccceeh
Confidence            4689999999999888877543 359999999999998888877777654321      333222 22222 24699999


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |..+-        .+..++.-+..++++||.+++--
T Consensus       138 sRA~~--------~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         138 SRAFA--------SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CSCSS--------SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhhhc--------CHHHHHHHHHHhcCCCcEEEEEC
Confidence            87533        44678888999999999998865

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.0001  Score=73.03  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=75.2

Q ss_pred             CCCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~~~~sFD  368 (597)
                      .++.+|||+++|.|+=+..++..+ ...|+++|+++.-+...+++....+..+..      ....+.. ... ...+.||
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~------~~~~~~~~~~~-~~~~~fd  173 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATV------KQGDGRYPSQW-CGEQQFD  173 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEE------EECCTTCTHHH-HTTCCEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccccee------eeccccccchh-ccccccc
Confidence            368899999999999887766543 258999999999999999998877765322      1111110 111 1124699


Q ss_pred             EEEEc------cchhhhc-----cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQ------FCIHYSF-----ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~------~vLh~lF-----es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .|++-      +++..-.     -+.       .-..++|.++.++|||||++|-+|-+-
T Consensus       174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            99872      1121110     000       124678999999999999999887544

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.54  E-value=0.00011  Score=75.63  Aligned_cols=114  Identities=16%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccc---------ccceeehhhhccCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY---------RRNVFSAELRSQYE  361 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~---------~~d~F~~dl~e~l~  361 (597)
                      ++.+|||..||+|..++.++. .+...|++.|+|+.+++.++++...++........         .......|....+.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            368999999999999998665 56779999999999999999998766543210000         00011111111111


Q ss_pred             CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI  413 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i  413 (597)
                      .....||+|..-- +       ..+..+|..+.+.++.||+|.+|..+...+
T Consensus       125 ~~~~~fDvIDiDP-f-------Gs~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         125 ERHRYFHFIDLDP-F-------GSPMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             HSTTCEEEEEECC-S-------SCCHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             hhcCcCCcccCCC-C-------CCcHHHHHHHHHHhccCCEEEEEecCchhh
Confidence            2234699987642 1       233568999999999999999998776544

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.51  E-value=0.00033  Score=70.19  Aligned_cols=113  Identities=18%  Similarity=0.185  Sum_probs=74.8

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      .++.+|||++||.|+=+..++..  +-..++++|+++.-+..++++....+..+..      .+..+. ..++.....||
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~------~~~~d~-~~~~~~~~~fD  187 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI------LFHSSS-LHIGELNVEFD  187 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEE------EESSCG-GGGGGGCCCEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccc------cccccc-ccccccccccc
Confidence            37889999999999976665542  2358999999999999999888777664432      222221 12222235799


Q ss_pred             EEEEc------cchhhhc-----cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        369 LVSCQ------FCIHYSF-----ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       369 vVi~~------~vLh~lF-----es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      .|++-      .++..-.     .+.       .-..++|.++.++|||||++|-+|-+-
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            99872      1121110     011       123678899999999999998887544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.42  E-value=0.00021  Score=68.80  Aligned_cols=58  Identities=21%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      ++.+++..+.    ..++.+|||||||+|.++..+++.+ .+|++||+++.+++.+++++...
T Consensus         9 i~~~iv~~~~----~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~   66 (235)
T d1qama_           9 NIDKIMTNIR----LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH   66 (235)
T ss_dssp             HHHHHHTTCC----CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhcC----CCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc
Confidence            4555555432    2368999999999999999999887 59999999999999999887543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.39  E-value=0.00064  Score=65.64  Aligned_cols=102  Identities=19%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh--ccCCCCCCcee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR--SQYEDKALELD  368 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~--e~l~~~~~sFD  368 (597)
                      ...+|||||+|.|.....++- ....+++.+|.+..-+...+.-....+..+..      .......  .......++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~------i~~~R~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTT------FCHDRAETFGQRKDVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEE------EEESCHHHHTTCTTTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcE------EEeehhhhccccccccccce
Confidence            357899999999998777664 33458999999999888888777776665432      2222111  11112235799


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|++..+-        .+..++.-+..+|++||.+++--
T Consensus       144 ~v~sRAva--------~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         144 IVTARAVA--------RLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EEEEECCS--------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEhhhh--------CHHHHHHHHhhhcccCCEEEEEC
Confidence            99998433        45678999999999999998854

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.35  E-value=0.00032  Score=72.83  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----C----------CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----G----------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR  357 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g----------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~  357 (597)
                      ++.+|||-+||+|+++..+.+.    +          ...+.|+|+++.+...|+-+..-.+.....    ......+..
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~----~~i~~~d~l  237 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR----SPIVCEDSL  237 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC----CSEEECCTT
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc----ceeecCchh
Confidence            5689999999999999775432    1          025899999999999998876544332111    113333322


Q ss_pred             ccCCCCCCceeEEEEccchhhhc-------------cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        358 SQYEDKALELDLVSCQFCIHYSF-------------ESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       358 e~l~~~~~sFDvVi~~~vLh~lF-------------es~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ...+  ..+||+|+++--+....             .....-..++..+.++|++||++.+.+|+.
T Consensus       238 ~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         238 EKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             TSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhc--ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence            2222  35699999986553210             111223469999999999999999988865

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.29  E-value=4e-05  Score=74.57  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      ++.+|||||||+|.++..+++.+ .+|++||+++.+++.+++++......   .     ++.+|.. .+......++.|+
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~~n~---~-----ii~~D~l-~~~~~~~~~~~vv   98 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRV---T-----LIHQDIL-QFQFPNKQRYKIV   98 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEE---E-----ECCSCCT-TTTCCCSSEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhccch---h-----hhhhhhh-ccccccceeeeEe
Confidence            57899999999999999999887 59999999999999888776533211   1     3333322 1222234577777


Q ss_pred             Eccchhh
Q psy17742        372 CQFCIHY  378 (597)
Q Consensus       372 ~~~vLh~  378 (597)
                      ++...|-
T Consensus        99 ~NLPY~I  105 (245)
T d1yuba_          99 GNIPYHL  105 (245)
T ss_dssp             EECCSSS
T ss_pred             eeeehhh
Confidence            7766544

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.27  E-value=0.0006  Score=66.14  Aligned_cols=115  Identities=17%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccc---eeehhhhccCCCCCCce
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN---VFSAELRSQYEDKALEL  367 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d---~F~~dl~e~l~~~~~sF  367 (597)
                      +..+|+|||||.|+++..++... ...+.|+|+--..        ...+...  ......   .........++  .+..
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--------~e~P~~~--~~~~~ni~~~~~~~dv~~l~--~~~~  133 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--------HEEPIPM--STYGWNLVRLQSGVDVFFIP--PERC  133 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--------SCCCCCC--CSTTGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--------ccCCccc--cccccccccchhhhhHHhcC--CCcC
Confidence            56799999999999999988664 3478888874221        0000000  000000   11111111222  3569


Q ss_pred             eEEEEccchhhhcc--CHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHh
Q psy17742        368 DLVSCQFCIHYSFE--SVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYR  418 (597)
Q Consensus       368 DvVi~~~vLh~lFe--s~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~  418 (597)
                      |+|+|-.+-+..-.  .......+|.-+.+.|+|||.|++-+..+  ..+.+.|.
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le  188 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKME  188 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHH
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHH
Confidence            99999754321000  01223467888889999999999998774  44444443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00028  Score=65.26  Aligned_cols=106  Identities=17%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCC
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKAL  365 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~  365 (597)
                      ++.+||||||+.|+|+..+.+.  ....++|+|+.+-         ..  ... .....+++....    ....+  ..+
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~--i~~-~~~~~~d~~~~~~~~~~~~~~--~~~   87 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP--IVG-VDFLQGDFRDELVMKALLERV--GDS   87 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC--CTT-EEEEESCTTSHHHHHHHHHHH--TTC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc--cCC-ceEeecccccchhhhhhhhhc--cCc
Confidence            6789999999999999986653  3468999998762         11  110 000011111111    11111  235


Q ss_pred             ceeEEEEccchhhh----c---cCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742        366 ELDLVSCQFCIHYS----F---ESVQQARCMLKNAAECLKPGGFFVGTVPDSN  411 (597)
Q Consensus       366 sFDvVi~~~vLh~l----F---es~~d~~~~L~~i~rlLKPGG~fIit~pn~~  411 (597)
                      +||+|++-.+..-.    .   .+..-....+.-+.++|++||.||+-+....
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~  140 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence            69999996553221    0   1112235567777899999999999887663

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.15  E-value=0.00022  Score=68.63  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=55.5

Q ss_pred             CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc
Q psy17742        292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE  366 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s  366 (597)
                      ++.+|||||++.|+-+..++.    .+ ..+++|+|+.+.....+....      .+.....++.......+.+..  ..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~------~~I~~i~gDs~~~~~~~~l~~--~~  151 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDM------ENITLHQGDCSDLTTFEHLRE--MA  151 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGC------TTEEEEECCSSCSGGGGGGSS--SC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccc------cceeeeecccccHHHHHHHHh--cC
Confidence            468899999999987665442    12 358999999875433221110      111101111111112223322  34


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|+|+.=. -|..    .....-+ ++..+|++||++|+.-
T Consensus       152 ~dlIfID~-~H~~----~~v~~~~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         152 HPLIFIDN-AHAN----TFNIMKW-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             SSEEEEES-SCSS----HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             CCEEEEcC-Ccch----HHHHHHH-HHhcccCcCCEEEEEc
Confidence            78776643 3443    2222333 4668999999999854

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.002  Score=63.70  Aligned_cols=113  Identities=10%  Similarity=-0.011  Sum_probs=69.6

Q ss_pred             CCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCCc
Q psy17742        291 GSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALE  366 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~s  366 (597)
                      .++.+|||++||.|+-+..++..  +...++++|+++.-++.+++++...+..+..      .+..+....  .....++
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~------~~~~d~~~~~~~~~~~~~  166 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCE------LAEEDFLAVSPSDPRYHE  166 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEE------EEECCGGGSCTTCGGGTT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcccee------eeehhhhhhcccccccce
Confidence            36889999999999977766542  3458999999999999999998877665432      333332111  1111246


Q ss_pred             eeEEEEc------cchhhhcc-------C---H----HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        367 LDLVSCQ------FCIHYSFE-------S---V----QQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       367 FDvVi~~------~vLh~lFe-------s---~----~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      ||.|++-      +++....+       +   .    .....+|.++. .|+|||.+|-+|-+-
T Consensus       167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            9999873      11111000       0   0    11134566665 479999998887543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00081  Score=71.66  Aligned_cols=116  Identities=14%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhc----C---------------CCEEEEEeCChHHHHHHHHHHHhhhhhcccccccccee
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING----G---------------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF  352 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~----g---------------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F  352 (597)
                      ++.+|+|-+||+|+++....+.    .               ...++|+|+++.+...|+-+..-.+.....  ...+.+
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i--~~~~~~  241 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL--DHGGAI  241 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBG--GGTBSE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccc--cccchh
Confidence            5678999999999998764331    1               025899999999999998765433221110  000111


Q ss_pred             e-hh-hhccCCCCCCceeEEEEccchhhh----------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        353 S-AE-LRSQYEDKALELDLVSCQFCIHYS----------FESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       353 ~-~d-l~e~l~~~~~sFDvVi~~~vLh~l----------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      . .+ +.... ....+||+|+++--+...          ......-..++..+.+.|+|||++.+.+|+.
T Consensus       242 ~~~~~l~~d~-~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         242 RLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             EESCTTSHHH-HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhhhhhhcc-cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            1 11 11111 112469999997544211          0111123369999999999999999998865

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0059  Score=59.93  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      ++..|||||+|.|.++..+++.+ .+|+++++++.+++..++++....
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~   67 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTP   67 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTST
T ss_pred             CCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhc
Confidence            57899999999999999999887 599999999999999999876543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00093  Score=64.90  Aligned_cols=44  Identities=7%  Similarity=-0.031  Sum_probs=39.4

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ++..|||||||+|.++..+++.+ .+|+++|+++.+++..+++..
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~   64 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTT
T ss_pred             CCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhh
Confidence            57889999999999999999877 589999999999999987653

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.30  E-value=0.013  Score=59.31  Aligned_cols=110  Identities=14%  Similarity=0.205  Sum_probs=67.2

Q ss_pred             CCEEEEECCCCChhHHHHH------------hcC-----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh
Q psy17742        293 PIKVLDMGSGKGGDMLKWI------------NGG-----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE  355 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la------------~~g-----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d  355 (597)
                      ..+|.|+||..|..+..+.            +.+     --+|..-|+-.+=-...-+.+......      .+.+|...
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~------~~~~f~~g  125 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV------DGVCFING  125 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC------TTCEEEEE
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC------CCCeEEEe
Confidence            4689999999999763211            111     125666776554333332222111110      11234433


Q ss_pred             -----hhccCCCCCCceeEEEEccchhhhcc-----------------------------CHHHHHHHHHHHHHhccCCc
Q psy17742        356 -----LRSQYEDKALELDLVSCQFCIHYSFE-----------------------------SVQQARCMLKNAAECLKPGG  401 (597)
Q Consensus       356 -----l~e~l~~~~~sFDvVi~~~vLh~lFe-----------------------------s~~d~~~~L~~i~rlLKPGG  401 (597)
                           -..-+|.  ++.|++++.++|||+-.                             -..|+..+|+.=++-|+|||
T Consensus       126 vpGSFY~rLfP~--~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG  203 (359)
T d1m6ex_         126 VPGSFYGRLFPR--NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG  203 (359)
T ss_dssp             EESCSSSCCSCT--TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred             cCCchhhhcCCC--CceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence                 1223444  67999999999999721                             02478889999999999999


Q ss_pred             EEEEEeCCh
Q psy17742        402 FFVGTVPDS  410 (597)
Q Consensus       402 ~fIit~pn~  410 (597)
                      .++++++..
T Consensus       204 ~mvl~~~gr  212 (359)
T d1m6ex_         204 RMVLTILGR  212 (359)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            999987543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.44  E-value=0.0092  Score=55.06  Aligned_cols=109  Identities=14%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+++.+||-+|||. |..+..+++ .+...|+++|.++.-++.|++.-...-.....     .-+...+.+ +.. ...+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-----~~~~~~i~~-~t~-g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-----TPLHEQIAA-LLG-EPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-----SCHHHHHHH-HHS-SSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-----cCHHHHHHH-HhC-CCCc
Confidence            34789999999998 445555554 46679999999999999888753221110000     011111111 111 2358


Q ss_pred             eEEEEccc------hhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFC------IHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~v------Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+++-.-.      .|+.+.. ......|+.+.++++|||.+++.
T Consensus        96 D~vid~vG~~~~~~~~~~~~~-~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKH-EAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGS-BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEEECccccccCCcccceee-cCcHHHHHHHHHHHhcCCEEEEe
Confidence            99885422      2222111 12246899999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.30  E-value=0.014  Score=52.73  Aligned_cols=99  Identities=15%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      +++.+||=+|||. |..+..+++. |..+|+++|.++.-++.|++.-...-.....     ..+...+.+ +.. ...||
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-----~~~~~~v~~-~t~-g~G~D   98 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN-----GHIEDQVMK-LTN-GKGVD   98 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGG-----SCHHHHHHH-HTT-TSCEE
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccc-----hhHHHHHHH-Hhh-ccCcc
Confidence            4678899999986 6666667665 4568999999999888887642211000000     011111111 222 23499


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+-.-.-          ...+.+..++|+|||.+++.
T Consensus        99 ~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          99 RVIMAGGG----------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             eEEEccCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            98765322          13567778999999999885

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.08  E-value=0.015  Score=51.46  Aligned_cols=103  Identities=11%  Similarity=-0.030  Sum_probs=60.5

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCcee
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFD  368 (597)
                      +++.+||=+|||. |..+..+++....+|+++|.++.-++.|++............    ..-..+..+.+.. ....+|
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~----~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPA----KEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTT----TSCHHHHHHHHHHHSSSCCS
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEecccc----ccccchhhhhhhcccccCCc
Confidence            3678999999985 555555665543599999999999998887432211000000    0000001111110 123589


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      +|+-.-.-          ...+..+.++|+|||.+++.-
T Consensus       101 ~vid~~g~----------~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         101 VTIDCSGN----------EKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             EEEECSCC----------HHHHHHHHHHSCTTCEEEECS
T ss_pred             eeeecCCC----------hHHHHHHHHHHhcCCceEEEe
Confidence            98764221          245777788999999998753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.0055  Score=54.80  Aligned_cols=97  Identities=16%  Similarity=0.054  Sum_probs=58.5

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      +++.+||-+|+|. |..+..+++....+|+++|.++..++.|++.-...-.....        ..+..+..   .+.||+
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--------~~~~~~~~---~~~~d~   94 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLE--------EGDWGEKY---FDTFDL   94 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGG--------TSCHHHHS---CSCEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccc--------hHHHHHhh---hcccce
Confidence            4789999999984 55666666543358999999999999887642211000000        00111112   245998


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+..-.-.+-        ..+....++|+|||++++.
T Consensus        95 vi~~~~~~~~--------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          95 IVVCASSLTD--------IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             EEECCSCSTT--------CCTTTGGGGEEEEEEEEEC
T ss_pred             EEEEecCCcc--------chHHHHHHHhhccceEEEe
Confidence            8764322111        1234568899999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.031  Score=49.60  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=60.5

Q ss_pred             CCCCEEEEECCCCChhH-HHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCce
Q psy17742        291 GSPIKVLDMGSGKGGDM-LKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l-~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sF  367 (597)
                      .++.+||=+|||..+.+ ..+++ .|..+|+++|.++.-++.|++.-.+.......     ..+. +....+. .....+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-----~~~~-~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK-----ESPQ-EIARKVEGQLGCKP   98 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS-----CCHH-HHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc-----cccc-cccccccccCCCCc
Confidence            36789999999875543 34444 46668999999999999887642211100000     0000 0001110 012358


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+|+..-.-          ...++...++|++||++++.-
T Consensus        99 Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          99 EVTIECTGA----------EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             SEEEECSCC----------HHHHHHHHHHSCTTCEEEECS
T ss_pred             eEEEeccCC----------chhHHHHHHHhcCCCEEEEEe
Confidence            998775322          246788899999999998853

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.47  E-value=0.033  Score=51.82  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      ++..|||.-||+|..+......| .+.+|+|+++..++.|++|+.
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            68999999999999999888887 699999999999999999975

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.25  E-value=0.044  Score=49.09  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-hhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-AELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-~dl~e~l~~~~~sF  367 (597)
                      .++.+||-+|||. |..+..+++. |..+|+++|.++.-++.|++.....-.....    .+... ......+.. ...+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~----~~~~~~~~~i~~~~~-~~g~  101 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE----TSVEERRKAIMDITH-GRGA  101 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT----SCHHHHHHHHHHHTT-TSCE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc----cchHHHHHHHHHhhC-CCCc
Confidence            4689999999984 5566666654 5558999999999999887642211000000    00000 000111222 2349


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+..-.-          ...++...++|+|||++++.
T Consensus       102 Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         102 DFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence            998764211          13567788999999998764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.16  E-value=0.024  Score=54.31  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=41.5

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL  338 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~  338 (597)
                      ++..|||.-||+|..+......| .+.+|+|++++.++.|++|+.+.
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHhc
Confidence            68999999999999999888888 59999999999999999987653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.033  Score=49.61  Aligned_cols=99  Identities=10%  Similarity=0.017  Sum_probs=59.2

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGS-G-KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGC-G-tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ..++.+||-.|+ | .|..+..+++....+|++++.+++-++.+++.-...-.....     .-+...+.....  ...+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-----~~~~~~i~~~t~--~~g~   98 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHRE-----VNYIDKIKKYVG--EKGI   98 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS-----TTHHHHHHHHHC--TTCE
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccccccc-----ccHHHHhhhhhc--cCCc
Confidence            347889999997 3 456666666654358999999988777776532111000000     001111111122  2459


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+..-         .  ...+....++|+|||.++..
T Consensus        99 d~v~d~~---------g--~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          99 DIIIEML---------A--NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEESC---------H--HHHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeecc---------c--HHHHHHHHhccCCCCEEEEE
Confidence            9998752         1  13577788999999999873

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=93.95  E-value=0.044  Score=52.69  Aligned_cols=78  Identities=17%  Similarity=0.093  Sum_probs=50.7

Q ss_pred             CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHH---HHHhhhh-----hccccccccceeehhhhccCCCCC
Q psy17742        293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKT---RYEELKR-----KEEARPYRRNVFSAELRSQYEDKA  364 (597)
Q Consensus       293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~e---r~~~~~~-----~~~~~~~~~d~F~~dl~e~l~~~~  364 (597)
                      ..+|||+-||.|.++..++..|. +|++++-++.+....+.   ++.....     ..+.     .+...|..+.+....
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri-----~li~~Ds~~~L~~~~  162 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-----QLIHASSLTALTDIT  162 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE-----EEEESCHHHHSTTCS
T ss_pred             CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhh-----eeecCcHHHHHhccC
Confidence            45899999999999999999884 89999999987655554   4332111     0111     133444333343333


Q ss_pred             CceeEEEEccch
Q psy17742        365 LELDLVSCQFCI  376 (597)
Q Consensus       365 ~sFDvVi~~~vL  376 (597)
                      .+||+|+.=-.+
T Consensus       163 ~~~DvIYlDPMF  174 (250)
T d2oyra1         163 PRPQVVYLDPMF  174 (250)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            569999985444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.56  E-value=0.058  Score=50.72  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=41.9

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      ++..|||.-||+|..+......| .+++|+|+++..++.|++|+....
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhh
Confidence            68999999999999999888777 699999999999999999987643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=0.087  Score=52.09  Aligned_cols=46  Identities=20%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      .+..|||||.|.|.++..++.. +..+|+++|+++..++..++++..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~   89 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG   89 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC
Confidence            4678999999999999998875 456899999999999999887653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.83  E-value=0.042  Score=48.33  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      +++.+||=+|||. |..+..+++....+|+++|.++.-++.+++.-...-.....     .-+...+..   ...+.+|+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-----~~~~~~~~~---~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQ-----EDPVEAIQR---DIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTT-----SCHHHHHHH---HHSSEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccc-----hhHHHHHHH---hhcCCccc
Confidence            3678999999986 44555555543369999999999988887642211000000     000000111   11233455


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |.+...           ...+....++|+|||++++.
T Consensus        98 i~~~~~-----------~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          98 LVTAVS-----------NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EECCSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             cccccc-----------chHHHHHHHHhcCCcEEEEE
Confidence            554321           13567788999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.68  E-value=0.12  Score=46.25  Aligned_cols=102  Identities=15%  Similarity=0.042  Sum_probs=62.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ..++.+||=+|||. |..+..+++. |...|+.+|+++.-++.|++.-...-.....    .+...........  .+.+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~----~~~~~~~~~~~~~--~~G~   99 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRE----LDKPVQDVITELT--AGGV   99 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGG----CSSCHHHHHHHHH--TSCB
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCcc----chhhhhhhHhhhh--cCCC
Confidence            45789999999997 6666666654 6668999999999888887742221110000    0001111111111  2458


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEEe
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGTV  407 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit~  407 (597)
                      |+|+-.-.-          ...+.+..+.|++| |.+++.-
T Consensus       100 d~vie~~G~----------~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         100 DYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SEEEESSCC----------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEEeccc----------chHHHHHHHHhhcCCeEEEecC
Confidence            998764222          24688889999996 9998753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.47  E-value=0.16  Score=45.13  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=59.7

Q ss_pred             CCCCCEEEEECCCCCh-hHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hh---ccCC
Q psy17742        290 LGSPIKVLDMGSGKGG-DMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LR---SQYE  361 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~-~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~---e~l~  361 (597)
                      ..++.+||=+|||.-+ .+..+++ .|...|+.+|.++.-++.|++.-...            .+...   ..   ..+.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~------------~i~~~~~~~~~~i~~~t   93 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH------------VINSKTQDPVAAIKEIT   93 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE------------EEETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE------------EEeCCCcCHHHHHHHHc
Confidence            4478999999998644 3344443 46678899999999888887642211            11111   11   1122


Q ss_pred             CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      .  +.||+|+-.-.-          ...++.+.++|+|||.+++.
T Consensus        94 ~--gg~D~vid~~G~----------~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          94 D--GGVNFALESTGS----------PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             T--SCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             C--CCCcEEEEcCCc----------HHHHHHHHhcccCceEEEEE
Confidence            2  469998764221          24667888999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.12  Score=45.61  Aligned_cols=95  Identities=19%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             CCCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      +++.+||=+|||. |..+..+++....+++++|.++.-++.+++.-...            .+............+.+|+
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~------------~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE------------VVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE------------EEETTCHHHHHTTTTCEEE
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE------------EEECchhhHHHHhcCCCce
Confidence            4789999999985 55666666654358889999998887776542211            1211100001111245999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV  407 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~  407 (597)
                      |+..-.-.          ..+....++|+|||.+++.-
T Consensus        97 vid~~g~~----------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          97 ILNTVAAP----------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEECCSSC----------CCHHHHHTTEEEEEEEEECC
T ss_pred             eeeeeecc----------hhHHHHHHHHhcCCEEEEec
Confidence            87653221          23456678999999998754

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.19  E-value=0.17  Score=48.86  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=40.1

Q ss_pred             CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      .+.+||||-||.|++..-+...|+.-+.++|+.+.+++..+.++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~   55 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC
Confidence            5689999999999999999999986677899999999888877643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.15  E-value=1.1  Score=38.57  Aligned_cols=98  Identities=12%  Similarity=-0.020  Sum_probs=61.0

Q ss_pred             EEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742        295 KVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC  372 (597)
Q Consensus       295 rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~  372 (597)
                      +|.=||+|.  +.++..+.+.|. +|++.|.+++.++.|++...    .        +.... ..+.+    ...|+|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~----~--------~~~~~-~~~~~----~~~DiIil   63 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL----V--------DEAGQ-DLSLL----QTAKIIFL   63 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS----C--------SEEES-CGGGG----TTCSEEEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc----c--------ceeee-ecccc----cccccccc
Confidence            577789985  345566777775 99999999998887765311    0        01111 11222    24798876


Q ss_pred             ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742        373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY  417 (597)
Q Consensus       373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l  417 (597)
                      .--       ......+++++...|+++-+++-+..-...+....
T Consensus        64 avp-------~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~  101 (165)
T d2f1ka2          64 CTP-------IQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPA  101 (165)
T ss_dssp             CSC-------HHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHH
T ss_pred             cCc-------HhhhhhhhhhhhhhcccccceeeccccchHHHHHH
Confidence            422       25678899999999998886654433333333333

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.05  E-value=0.096  Score=46.06  Aligned_cols=99  Identities=17%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             CCCCEEEEECCC--CChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        291 GSPIKVLDMGSG--KGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       291 ~~~~rVLDLGCG--tG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      +++.+||=+|||  .|..+..+++ .|...|+++|.++.-++.+++.-...-.....     .-+.....+...  .+.|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~-----~~~~~~~~~~~~--~~~~   98 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASM-----QDPLAEIRRITE--SKGV   98 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTT-----SCHHHHHHHHTT--TSCE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCC-----cCHHHHHHHHhh--cccc
Confidence            477899999974  3444444443 56679999999999888887642211000000     001111111111  2459


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+..-.-          ...++.+.++|+|||.+++.
T Consensus        99 d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          99 DAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             hhhhccccc----------chHHHhhhhhcccCCEEEEe
Confidence            999875332          23556678999999999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.58  E-value=0.4  Score=41.72  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=63.4

Q ss_pred             EEEEECCCC-Ch-hHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742        295 KVLDMGSGK-GG-DMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS  371 (597)
Q Consensus       295 rVLDLGCGt-G~-~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi  371 (597)
                      +|+=||||. |. ++..+.+.|. .+|+|+|.++..++.|++...-.            ....+. .....  ...|+|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~------------~~~~~~-~~~~~--~~~dlIi   67 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID------------EGTTSI-AKVED--FSPDFVM   67 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS------------EEESCG-GGGGG--TCCSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch------------hhhhhh-hhhhc--ccccccc
Confidence            588899996 44 4555666663 48999999999998887642100            111111 11111  2378987


Q ss_pred             EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742        372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR  418 (597)
Q Consensus       372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~  418 (597)
                      ..--.       .....++.++...++++..++-..-....+...+.
T Consensus        68 la~p~-------~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~  107 (171)
T d2g5ca2          68 LSSPV-------RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLE  107 (171)
T ss_dssp             ECSCH-------HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHH
T ss_pred             ccCCc-------hhhhhhhhhhhccccccccccccccccHHHHHHHH
Confidence            75333       56778899999999988666544443344444444

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.34  E-value=0.18  Score=44.41  Aligned_cols=97  Identities=9%  Similarity=0.038  Sum_probs=59.4

Q ss_pred             CCCEEEEECCCCChhH-HHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGKGGDM-LKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGtG~~l-~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=+|+|..+.+ ..+++ .|...|+++|.++.-++.+++.....-....     .+.+ ....+.. . ...+|+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~-----~~~~-~~~~~~~-~-~~g~d~  103 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR-----RDPV-KQVMELT-R-GRGVNV  103 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT-----SCHH-HHHHHHT-T-TCCEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc-----ccHH-HHHHHhh-C-CCCceE
Confidence            6789999999875544 44543 5667899999999888888764322111000     0000 0011111 1 235999


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+..-.-          ...+....++|++||++++.
T Consensus       104 vid~~g~----------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         104 AMDFVGS----------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEESSCC----------HHHHHHGGGGEEEEEEEEEC
T ss_pred             EEEecCc----------chHHHHHHHHHhCCCEEEEE
Confidence            8775332          23577788999999999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.30  E-value=0.11  Score=45.37  Aligned_cols=97  Identities=16%  Similarity=0.083  Sum_probs=56.1

Q ss_pred             CCCCEEEEECCCCChhH-HHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742        291 GSPIKVLDMGSGKGGDM-LKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL  369 (597)
Q Consensus       291 ~~~~rVLDLGCGtG~~l-~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv  369 (597)
                      .++.+||=.|||.-+.+ ..+++....+|+++|.++.-++.+++.-...-.....     ..+...+. ...  .+.+|+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~-----~~~~~~~~-~~~--~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLK-----EDAAKFMK-EKV--GGVHAA   97 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTT-----SCHHHHHH-HHH--SSEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceeccccc-----chhhhhcc-ccc--CCCceE
Confidence            36789999999986544 3355444358999999999888887632111000000     00111011 111  233555


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |.+...           ...+....++|+|||.+++.
T Consensus        98 v~~~~~-----------~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          98 VVTAVS-----------KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             EESSCC-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EeecCC-----------HHHHHHHHHHhccCCceEec
Confidence            544311           24578888999999999885

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.19  E-value=0.75  Score=45.62  Aligned_cols=30  Identities=23%  Similarity=0.143  Sum_probs=27.3

Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742        462 FLVYFPLLERIAGEFGLKRILKENFRSFYL  491 (597)
Q Consensus       462 Ylv~~e~L~~La~eaGfelV~~~~F~ef~~  491 (597)
                      +-|++..|.+.++++|++++...+..+|..
T Consensus       275 ~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL~  304 (365)
T d1zkda1         275 AHVDFDALGRAAESIGARAHGPVTQGAFLK  304 (365)
T ss_dssp             CCEEHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred             eeeCHHHHHHHHHhcCcceeccccHHHHHH
Confidence            568999999999999999999999998864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=90.90  E-value=0.18  Score=48.05  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE  336 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~  336 (597)
                      .+||||-||.|++..-+...|+..+.++|+.+.+++.-+.++.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~   43 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS   43 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC
Confidence            3699999999999988888898677799999998887776653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.04  E-value=0.4  Score=42.61  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=36.3

Q ss_pred             CCCCCEEEEECCCCChhH-HHHH-hcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742        290 LGSPIKVLDMGSGKGGDM-LKWI-NGGVKHVVFADIASVSIEDCKTRYEE  337 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l-~~la-~~g~~~V~GIDiS~~mIe~A~er~~~  337 (597)
                      .+++.+||=+|||..+.+ ..++ ..|..+|+++|++++-++.|++.-..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence            347899999999865533 3333 34667999999999999999986443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.59  E-value=0.6  Score=41.29  Aligned_cols=45  Identities=9%  Similarity=0.014  Sum_probs=34.8

Q ss_pred             CCCCCEEEEECCCCChhH-HHHHh-cCCCEEEEEeCChHHHHHHHHH
Q psy17742        290 LGSPIKVLDMGSGKGGDM-LKWIN-GGVKHVVFADIASVSIEDCKTR  334 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l-~~la~-~g~~~V~GIDiS~~mIe~A~er  334 (597)
                      .+++.+||=+|||..+.+ ..+++ .|...|+++|+++.-++.|++.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            457899999999875544 33443 5677999999999999999874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.02  E-value=0.22  Score=43.91  Aligned_cols=99  Identities=16%  Similarity=0.117  Sum_probs=57.1

Q ss_pred             CCCCCEEEEECC-C-CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGS-G-KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGC-G-tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      ..++.+||=.|. | .|..+..+++....++++++-+++-.+.+++.....-....     ..-+...+.+...  ...|
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~-----~~~~~~~v~~~t~--~~g~   95 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSR-----SVDFADEILELTD--GYGV   95 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETT-----CSTHHHHHHHHTT--TCCE
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCC-----ccCHHHHHHHHhC--CCCE
Confidence            346789999873 3 35566666665435889988888777777653211100000     0001111222122  2459


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+..-.-           ..++.+.++|+++|+++..
T Consensus        96 d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          96 DVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence            999875321           2456677899999999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.00  E-value=0.38  Score=42.14  Aligned_cols=98  Identities=9%  Similarity=0.029  Sum_probs=59.7

Q ss_pred             CCCCEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      +++.+||=.|+|.  |..+..+++....+|++++.|+.-++.+++.-...-.....     .-+...+.+ +.. ...+|
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~-----~d~~~~v~~-~t~-g~g~d   99 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYRE-----EDLVERLKE-ITG-GKKVR   99 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-----SCHHHHHHH-HTT-TCCEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCC-----CCHHHHHHH-HhC-CCCeE
Confidence            4678999997765  55666666654469999999999988887643221110000     011111211 222 24699


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+..-.-           ..+.....+|+++|.++..
T Consensus       100 ~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         100 VVYDSVGR-----------DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             EEEECSCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             EEEeCccH-----------HHHHHHHHHHhcCCeeeec
Confidence            98875322           2456778899999988763

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=87.87  E-value=2.8  Score=40.36  Aligned_cols=111  Identities=9%  Similarity=-0.036  Sum_probs=67.3

Q ss_pred             CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCC---CCCc
Q psy17742        294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYED---KALE  366 (597)
Q Consensus       294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~---~~~s  366 (597)
                      ..|+.||||-=.-...+.......++=+|. +.+++.-++.+...+......   ......+    +.+.+..   ....
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~---~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTAD---RREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSE---EEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCce---EEEecccccchHHHHHHhcCCCCCC
Confidence            457779998654443332222346777884 777776666666543322110   0011112    1111111   1123


Q ss_pred             eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742        367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS  410 (597)
Q Consensus       367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~  410 (597)
                      -=++++-.++.|+  +.+....+|+.+..+..||+.+++...+.
T Consensus       167 ptl~i~EGvl~YL--~~~~~~~ll~~i~~~~~~GS~l~~d~~~~  208 (297)
T d2uyoa1         167 RTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSPL  208 (297)
T ss_dssp             CEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CEEEEEccccccC--CHHHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            4567778889997  77899999999999999999999987654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.21  E-value=0.78  Score=40.47  Aligned_cols=98  Identities=13%  Similarity=-0.138  Sum_probs=59.7

Q ss_pred             CCCCEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742        291 GSPIKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD  368 (597)
Q Consensus       291 ~~~~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD  368 (597)
                      +++.+||=.|+|.  |..+..+++....+|++++-+++-++.+++.....-.....     ..+.........  ...+|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-----~~~~~~~~~~~~--~~Gvd  100 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKT-----VNSLEEALKKAS--PDGYD  100 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS-----CSCHHHHHHHHC--TTCEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhccccc-----ccHHHHHHHHhh--cCCCc
Confidence            4789999888765  44566677665569999999988877776642221111000     011111111111  23599


Q ss_pred             EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      +|+-.-.           ...++.+.++|+|||.++..
T Consensus       101 ~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         101 CYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             eeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            9977521           13678889999999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.33  E-value=1.1  Score=38.99  Aligned_cols=101  Identities=12%  Similarity=0.060  Sum_probs=57.9

Q ss_pred             CCCCCEEEEECCCCChhH-HH-HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGKGGDM-LK-WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~~l-~~-la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+++.+||=+|+|.++.+ .. +...+...|+++|.++.-++.+++...........   ..+.... .......  +.+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~---~~~~~~~-~~~~~~~--~G~   99 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQD---YKKPIQE-VLTEMSN--GGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGG---CSSCHHH-HHHHHTT--SCB
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCC---chhHHHH-HHHHHhc--CCC
Confidence            457899999999865433 33 33456679999999999998887753222111000   0001111 1111222  459


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit  406 (597)
                      |+|+-.....          ..++.+...+++| |.+++.
T Consensus       100 D~vid~~G~~----------~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         100 DFSFEVIGRL----------DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SEEEECSCCH----------HHHHHHHHHBCTTTCEEEEC
T ss_pred             CEEEecCCch----------hHHHHHHHHHhcCCcceEEe
Confidence            9998764442          3456666778776 555543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.08  E-value=0.31  Score=43.77  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=60.7

Q ss_pred             CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh-hhhccCCCCCCceeE
Q psy17742        292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA-ELRSQYEDKALELDL  369 (597)
Q Consensus       292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~-dl~e~l~~~~~sFDv  369 (597)
                      ++.+||=||+|. |..+...+..-.+.|+.+|.++..++..+..+.......        .... .+.+.+.    ..|+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~--------~~~~~~l~~~~~----~aDi   98 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL--------YSNSAEIETAVA----EADL   98 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE--------ECCHHHHHHHHH----TCSE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceee--------hhhhhhHHHhhc----cCcE
Confidence            578999999997 445555444333699999999999988877654431110        1111 1233332    3899


Q ss_pred             EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742        370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV  404 (597)
Q Consensus       370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI  404 (597)
                      |+..-.+.-    ...+.-+-+++.+.+|||..++
T Consensus        99 vI~aalipG----~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          99 LIGAVLVPG----RRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             EEECCCCTT----SSCCCCBCHHHHTTSCTTCEEE
T ss_pred             EEEeeecCC----cccCeeecHHHHhhcCCCcEEE
Confidence            988644322    1233345577788999998775

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.89  E-value=1.2  Score=38.49  Aligned_cols=101  Identities=12%  Similarity=-0.020  Sum_probs=58.9

Q ss_pred             CCCCCEEEEECCCCCh-hHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742        290 LGSPIKVLDMGSGKGG-DMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL  367 (597)
Q Consensus       290 ~~~~~rVLDLGCGtG~-~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF  367 (597)
                      .+++.+||=+|||..+ .+..++ ..|...|+++|.++.-++.+++.-...-......   .+.... ......  .+.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~---~~~~~~-~~~~~~--~~g~   99 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF---SKPIQE-VLIEMT--DGGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGC---SSCHHH-HHHHHT--TSCB
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCch---hhHHHH-HHHHHc--CCCC
Confidence            4478999999998433 333333 3566799999999999888886432221110000   000000 111111  2359


Q ss_pred             eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742        368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT  406 (597)
Q Consensus       368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit  406 (597)
                      |+|+-.-.-          ..+++.+..++++||.+++.
T Consensus       100 D~vid~~G~----------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2         100 DYSFECIGN----------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             SEEEECSCC----------HHHHHHHHHTBCTTTCEEEE
T ss_pred             cEeeecCCC----------HHHHHHHHHhhcCCceeEEE
Confidence            999875322          24677888899999877654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.40  E-value=2.6  Score=39.27  Aligned_cols=47  Identities=17%  Similarity=0.100  Sum_probs=38.1

Q ss_pred             CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742        292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYEELK  339 (597)
Q Consensus       292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~  339 (597)
                      +++.||=.|++.|.   .+..+++.|. +|+++|.++..++.+.+.....+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~   58 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAG   58 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence            47889999999876   5556788885 89999999999998887766654