Psyllid ID: psy17743

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF
cccccEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEccEEEEEcccEEccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEcccccEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccEEEEcccccccHHHHHcccccccc
cccccEEccccHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHccHHHHHHccccccEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcEEEEccEEEEEcccEccccEEccccccccccccEEccccHHHcEEEcccccccccccccccccEEEccccccccEEEEccccccEEEEcEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHcEHHHEEEEEEEccEEEEEEEEEEcHHHcEEEEEEEccHHHHHHHHHHccccccccEccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccHHHHHHcccHHHHccccEEEEccccccEEEEcEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHcEHHHEEEEEEEcHHHcccHHHHHHcHHHHHcccccccc
meaggkemklsQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITdlskcdfrKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYgvctidghkekignfrieppglfrgrgehpkmgklKRRVQAEDIIIncskdskvpppppghkwkevrhdnqVTWLASWTENVQGQVKYIMlnpssklkgekDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALragnekdedqadtvgcCSLRVEHIqlheekdgkpyvVCFDFlgkdsiryynevpveKRVFKNLQLFVEnkkgsddlfdRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCnhqrsvpkshdksmgnLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETdkeenktialgtsklnyldprisVTWLASWTENVQGQVKYIMlnpssklkgekDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALragnekdedqadtvgccSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF
meaggkemklsqdAEEIATFYARMIEHeyttkeafntnFMKDWRKSMTEKERAVitdlskcdfrkMHAYFvqkseerkamskeekkkikdeneaitkeygvctidghkekignfrieppglfrgrgehpkmgkLKRRVQAEDIIincskdskvpppppgHKWKEVRHDNQVTWLASWTENVQGQVKYIMLnpssklkgekdWQKYETARKLAKSINKIRenyqadwkskemRIRQRAVALYFIDKLALragnekdedqaDTVGCCSLRVEHIqlheekdgkpyvVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVEnkkgsddlfdRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNhqrsvpkshdksmgnlkekisnkrkqvkDAERALKdakkageskamtdkkktalgrlkEQLLKLevqetdkeenktialgtsklnyldPRISVTWLASWTENVQGQVKYIMLnpssklkgekdWQKYETARKLAKSINKIRenyqadwkskemRIRQRAVALYFIDKLALragnekdedqaDTVGCCSLRVEhiqlheekdekkiynktQRAKFRWAIDMATADFVF
MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSeerkamskeekkkikdeneAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRlkeqllklevqeTDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF
****************IATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFV***********************ITKEYGVCTIDGHKEKIGNFRIEPPGLF*******************DIII********************RHDNQVTWLASWTENVQGQVKYIMLNP********DWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGN*****QADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCN***************************************************************************TIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNP********DWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGN******ADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADF**
MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFV***********************ITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNH***********************KQVKDA****************TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQV***************************KSINKIRENYQADWKS*EMRIRQRAVALYFIDKLA**************VGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF
**********SQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKS*************IKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAG*********TVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI****************************KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAG*********TVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF
MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA******DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA******DQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATA***F
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MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFxxxxxxxxxxxxxxxxxxxxxxxxxxxxYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxGESKAMTDKKKTAxxxxxxxxxxxxxxxxxxxxxKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
P30189972 DNA topoisomerase 1 OS=Dr yes N/A 0.765 0.486 0.724 0.0
P11387765 DNA topoisomerase 1 OS=Ho yes N/A 0.786 0.635 0.716 0.0
Q7YR26767 DNA topoisomerase 1 OS=Ch N/A N/A 0.786 0.633 0.716 0.0
Q04750767 DNA topoisomerase 1 OS=Mu yes N/A 0.786 0.633 0.713 0.0
Q07050767 DNA topoisomerase 1 OS=Cr yes N/A 0.786 0.633 0.713 0.0
Q9WUL0767 DNA topoisomerase 1 OS=Ra yes N/A 0.786 0.633 0.711 0.0
P41512829 DNA topoisomerase 1 OS=Xe N/A N/A 0.786 0.586 0.689 0.0
Q969P6601 DNA topoisomerase I, mito no N/A 0.779 0.801 0.652 0.0
A9Q1D5601 DNA topoisomerase I, mito no N/A 0.779 0.801 0.650 0.0
Q6IM78593 DNA topoisomerase I, mito no N/A 0.779 0.812 0.616 1e-178
>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1 Back     alignment and function desciption
 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/482 (72%), Positives = 399/482 (82%), Gaps = 9/482 (1%)

Query: 5   GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
           GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D  KC+F+
Sbjct: 467 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 526

Query: 65  KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
           +M  YF  +SE+RKA SKEEK   K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 527 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 586

Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
           RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 587 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 646

Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
           VKYIMLNPSSKLKGEKD  KYETAR+L K I+KIR  Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 647 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 706

Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
           KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK  VV FDF GKDSIRYYNEV VE
Sbjct: 707 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 766

Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
           KRVFKNL+LF+E+KK  DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+ 
Sbjct: 767 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 826

Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
           L DP  +  EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI  KR+ ++  E  
Sbjct: 827 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 884

Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
                   E  +  +KK   L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 885 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 937

Query: 485 TW 486
            W
Sbjct: 938 AW 939
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.
Drosophila melanogaster (taxid: 7227)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 2
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2 Back     alignment and function description
>sp|Q7YR26|TOP1_CHLAE DNA topoisomerase 1 OS=Chlorocebus aethiops GN=TOP1 PE=2 SV=1 Back     alignment and function description
>sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2 Back     alignment and function description
>sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1 Back     alignment and function description
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1 Back     alignment and function description
>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1 Back     alignment and function description
>sp|A9Q1D5|TOP1M_PANTR DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1 Back     alignment and function description
>sp|Q6IM78|TOP1M_RAT DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
350404638 1028 PREDICTED: DNA topoisomerase 1-like [Bom 0.779 0.468 0.798 0.0
340720974 1027 PREDICTED: DNA topoisomerase 1-like [Bom 0.779 0.469 0.794 0.0
380027021 1024 PREDICTED: DNA topoisomerase 1-like [Api 0.781 0.471 0.793 0.0
307182085 1038 DNA topoisomerase 1 [Camponotus floridan 0.781 0.465 0.782 0.0
332030376 1016 DNA topoisomerase 1 [Acromyrmex echinati 0.781 0.475 0.768 0.0
328786781 1026 PREDICTED: DNA topoisomerase 1 isoform 2 0.781 0.470 0.788 0.0
328786783 1022 PREDICTED: DNA topoisomerase 1 isoform 1 0.781 0.472 0.788 0.0
156543660 1019 PREDICTED: DNA topoisomerase 1-like [Nas 0.781 0.473 0.778 0.0
270006557 943 hypothetical protein TcasGA2_TC010428 [T 0.779 0.511 0.767 0.0
242016037 961 DNA topoisomerase, putative [Pediculus h 0.786 0.505 0.784 0.0
>gi|350404638|ref|XP_003487171.1| PREDICTED: DNA topoisomerase 1-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/487 (79%), Positives = 433/487 (88%), Gaps = 5/487 (1%)

Query: 5   GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
           GKEMKLSQDAEE+ATFYARM++H+YTTK AFN NF  DWR+ MTE ERA I DLSKC+F+
Sbjct: 509 GKEMKLSQDAEEVATFYARMLDHDYTTKSAFNNNFFHDWREVMTESERAKINDLSKCNFK 568

Query: 65  KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
           +MH+YFVQKSEERKAM+KEEK+KIK+ NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 569 EMHSYFVQKSEERKAMTKEEKQKIKETNEQIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 628

Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
           RGEHPKMGKLKRRV  EDI+INCSKDS +P PPPGHKWKEVRHD  VTWLASWTEN+QGQ
Sbjct: 629 RGEHPKMGKLKRRVMPEDILINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENIQGQ 688

Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
           VKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR  Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 689 VKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFID 748

Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
           KLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVE
Sbjct: 749 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVE 808

Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
           KRVFKNLQLF+ENK  SDDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL++
Sbjct: 809 KRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDK 868

Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
           L +PD +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI  K++ + +AE A
Sbjct: 869 LTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAISEAEHA 928

Query: 425 LKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
           +K+AK+     + + K + +KKK AL RLKEQL KLEVQ TDKEENK IALGTSKLNYLD
Sbjct: 929 VKEAKRDAKHGSVKEKVVYEKKKKALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLD 988

Query: 480 PRISVTW 486
           PRI+V W
Sbjct: 989 PRITVAW 995

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340720974|ref|XP_003398903.1| PREDICTED: DNA topoisomerase 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380027021|ref|XP_003697235.1| PREDICTED: DNA topoisomerase 1-like [Apis florea] Back     alignment and taxonomy information
>gi|307182085|gb|EFN69463.1| DNA topoisomerase 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332030376|gb|EGI70083.1| DNA topoisomerase 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328786781|ref|XP_396203.4| PREDICTED: DNA topoisomerase 1 isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|328786783|ref|XP_003250839.1| PREDICTED: DNA topoisomerase 1 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|156543660|ref|XP_001605104.1| PREDICTED: DNA topoisomerase 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|270006557|gb|EFA03005.1| hypothetical protein TcasGA2_TC010428 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242016037|ref|XP_002428645.1| DNA topoisomerase, putative [Pediculus humanus corporis] gi|212513308|gb|EEB15907.1| DNA topoisomerase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
UNIPROTKB|F1NPT1747 TOP1 "Uncharacterized protein" 0.786 0.650 0.673 1.6e-180
UNIPROTKB|Q7YR26767 TOP1 "DNA topoisomerase 1" [Ch 0.786 0.633 0.667 2.4e-179
UNIPROTKB|P11387765 TOP1 "DNA topoisomerase 1" [Ho 0.786 0.635 0.667 3e-179
UNIPROTKB|F1SDV7769 TOP1 "Uncharacterized protein" 0.786 0.631 0.667 3e-179
UNIPROTKB|I3LHM3820 TOP1 "Uncharacterized protein" 0.786 0.592 0.667 3e-179
UNIPROTKB|F1MN93769 TOP1 "Uncharacterized protein" 0.786 0.631 0.665 3.9e-179
UNIPROTKB|F1NXP4593 TOP1MT "Uncharacterized protei 0.779 0.812 0.650 5e-179
UNIPROTKB|F1PUE0770 TOP1 "Uncharacterized protein" 0.786 0.631 0.665 1.3e-178
MGI|MGI:98788767 Top1 "topoisomerase (DNA) I" [ 0.786 0.633 0.665 4.5e-178
UNIPROTKB|Q07050767 TOP1 "DNA topoisomerase 1" [Cr 0.786 0.633 0.665 5.7e-178
UNIPROTKB|F1NPT1 TOP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
 Identities = 332/493 (67%), Positives = 383/493 (77%)

Query:     5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
             GK MKLS  AEE+ATF+A+M++HEYTTKE F  NF KDWRK MT +E++ IT LSKCDF 
Sbjct:   226 GKVMKLSTKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTSEEKSTITSLSKCDFT 285

Query:    65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
              M  YF  ++                    + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct:   286 HMSQYFKAQTEARKQMSKEEKQKIKEENERLLKEYGYCVMDNHKERIANFKIEPPGLFRG 345

Query:   125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
             RG HPKMG LKRR+  EDIIINCSKDSKVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG 
Sbjct:   346 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 405

Query:   185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
             +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR  Y+ DWKSKEM++RQRAVALYFID
Sbjct:   406 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 465

Query:   245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
             KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct:   466 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 525

Query:   304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
             EKRVFKNLQLF+ENK+  DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL 
Sbjct:   526 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 585

Query:   364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
             EL +PD +   KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI  K++Q+ DA R
Sbjct:   586 ELTNPDDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 645

Query:   424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
              LK AK      +  +SK   + KK A+ R            TD+EENK IAL TSKLNY
Sbjct:   646 ELKSAKADAKVRRDEKSKKAVESKKKAVQRIEEQLMKLEVQATDREENKQIALSTSKLNY 705

Query:   478 LDPRISVTWLASW 490
             LDPRISV W   W
Sbjct:   706 LDPRISVAWCKKW 718
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA
GO:0000228 "nuclear chromosome" evidence=IEA
GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA
GO:0003682 "chromatin binding" evidence=IEA
GO:0003917 "DNA topoisomerase type I activity" evidence=IEA
GO:0005654 "nucleoplasm" evidence=IEA
GO:0005730 "nucleolus" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA
GO:0006265 "DNA topological change" evidence=IEA
GO:0040016 "embryonic cleavage" evidence=IEA
GO:0042493 "response to drug" evidence=IEA
GO:0043204 "perikaryon" evidence=IEA
UNIPROTKB|Q7YR26 TOP1 "DNA topoisomerase 1" [Chlorocebus aethiops (taxid:9534)] Back     alignment and assigned GO terms
UNIPROTKB|P11387 TOP1 "DNA topoisomerase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDV7 TOP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHM3 TOP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN93 TOP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXP4 TOP1MT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUE0 TOP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:98788 Top1 "topoisomerase (DNA) I" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q07050 TOP1 "DNA topoisomerase 1" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O17966TOP1_CAEEL5, ., 9, 9, ., 1, ., 20.65980.77340.5930yesN/A
Q9WUL0TOP1_RAT5, ., 9, 9, ., 1, ., 20.71190.78640.6336yesN/A
Q04750TOP1_MOUSE5, ., 9, 9, ., 1, ., 20.71390.78640.6336yesN/A
Q7YR26TOP1_CHLAE5, ., 9, 9, ., 1, ., 20.71600.78640.6336N/AN/A
P07799TOP1_SCHPO5, ., 9, 9, ., 1, ., 20.54520.64880.4926yesN/A
P11387TOP1_HUMAN5, ., 9, 9, ., 1, ., 20.71600.78640.6352yesN/A
Q07050TOP1_CRIGR5, ., 9, 9, ., 1, ., 20.71390.78640.6336yesN/A
P04786TOP1_YEAST5, ., 9, 9, ., 1, ., 20.52340.63750.5123yesN/A
P30189TOP1_DROME5, ., 9, 9, ., 1, ., 20.72400.76530.4866yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer5.99.1.20.914
3rd Layer5.99.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
smart00435391 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota 0.0
cd03488215 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_I 1e-115
pfam02919215 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomer 1e-114
cd00660215 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-termi 1e-111
cd00659218 cd00659, Topo_IB_C, DNA topoisomerase IB, C-termin 3e-81
pfam01028243 pfam01028, Topoisom_I, Eukaryotic DNA topoisomeras 6e-77
cd03489212 cd03489, Topoisomer_IB_N_LdtopoI_like, Topoisomer_ 5e-66
smart00435 391 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota 5e-56
cd03490217 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A s 1e-44
COG3569354 COG3569, COG3569, Topoisomerase IB [DNA replicatio 2e-42
cd00659 218 cd00659, Topo_IB_C, DNA topoisomerase IB, C-termin 4e-27
pfam01028 243 pfam01028, Topoisom_I, Eukaryotic DNA topoisomeras 4e-27
pfam1437071 pfam14370, Topo_C_assoc, C-terminal topoisomerase 2e-15
COG3569354 COG3569, COG3569, Topoisomerase IB [DNA replicatio 5e-09
cd00397164 cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes 1e-07
cd03488215 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_I 3e-06
cd00660215 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-termi 6e-06
pfam02919215 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomer 3e-05
pfam1437071 pfam14370, Topo_C_assoc, C-terminal topoisomerase 0.001
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota) Back     alignment and domain information 
 Score =  574 bits (1482), Expect = 0.0
 Identities = 247/395 (62%), Positives = 290/395 (73%), Gaps = 30/395 (7%)

Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
           LFRGRGEHPK GKLKRR+  EDI IN  KD+ VP PPPGHKWKEVRHDN VTWLASW EN
Sbjct: 1   LFRGRGEHPKTGKLKRRIMPEDITINIGKDAPVPEPPPGHKWKEVRHDNTVTWLASWKEN 60

Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
           + G +KY+ L  SS LKG+ D +KYE ARKL K I+KIR++Y  D KSKEM++RQRA AL
Sbjct: 61  INGSIKYVFLAASSSLKGQSDRKKYEKARKLKKHIDKIRKDYTKDLKSKEMKVRQRATAL 120

Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
           Y IDKLALRAGNEK ED+ADTVGCCSLRVEH+ L            FDFLGKDSIRYYNE
Sbjct: 121 YLIDKLALRAGNEKGEDEADTVGCCSLRVEHVTLKPPNKVI-----FDFLGKDSIRYYNE 175

Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
           V V+K+VFKNL++F++ KK  DDLFDRLNTS LNKHL ELM GLTAKVFRTYNASITLQ+
Sbjct: 176 VEVDKQVFKNLKIFMKPKKPGDDLFDRLNTSKLNKHLKELMPGLTAKVFRTYNASITLQE 235

Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
           QL EL   D + AEKILAYNRANR VA+LCNHQR+V K+H+KSM  L+EKI   + Q+K 
Sbjct: 236 QLKELTAKDGNVAEKILAYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKR 295

Query: 421 AERAL------KDAKKAGESKAMTD-------------------KKKTALGRLKEQLLKL 455
            ++ +       D K+  +SK   D                   KKK  + RL+E++ KL
Sbjct: 296 LKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKL 355

Query: 456 EVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
           EVQ TDKEENKT+ALGTSK+NY+DPRI+V W   +
Sbjct: 356 EVQATDKEENKTVALGTSKINYIDPRITVAWCKKF 390

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I Back     alignment and domain information
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA binding fragment Back     alignment and domain information
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>gnl|CDD|238355 cd00659, Topo_IB_C, DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|216252 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I, catalytic core Back     alignment and domain information
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like, Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota) Back     alignment and domain information
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB Back     alignment and domain information
>gnl|CDD|226099 COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238355 cd00659, Topo_IB_C, DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|216252 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I, catalytic core Back     alignment and domain information
>gnl|CDD|206538 pfam14370, Topo_C_assoc, C-terminal topoisomerase domain Back     alignment and domain information
>gnl|CDD|226099 COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238231 cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I Back     alignment and domain information
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA binding fragment Back     alignment and domain information
>gnl|CDD|206538 pfam14370, Topo_C_assoc, C-terminal topoisomerase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
KOG0981|consensus759 100.0
smart00435391 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topois 100.0
cd00660215 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA bi 100.0
cd03488215 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI 100.0
cd03489212 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_Ldtop 100.0
cd03490217 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of 100.0
PF02919215 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA 100.0
PHA03101314 DNA topoisomerase type I; Provisional 100.0
PF01028234 Topoisom_I: Eukaryotic DNA topoisomerase I, cataly 100.0
cd00659218 Topo_IB_C DNA topoisomerase IB, C-terminal catalyt 100.0
KOG0981|consensus 759 100.0
COG3569354 Topoisomerase IB [DNA replication, recombination, 100.0
COG3569354 Topoisomerase IB [DNA replication, recombination, 100.0
smart00435 391 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topois 100.0
PF1437071 Topo_C_assoc: C-terminal topoisomerase domain; PDB 99.83
PF01028 234 Topoisom_I: Eukaryotic DNA topoisomerase I, cataly 99.75
cd00659 218 Topo_IB_C DNA topoisomerase IB, C-terminal catalyt 99.6
PHA03101 314 DNA topoisomerase type I; Provisional 98.59
cd03488215 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI 97.41
cd00660215 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA bi 97.41
cd03489212 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_Ldtop 97.4
cd03490217 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of 97.38
PF02919215 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA 97.24
cd00397164 DNA_BRE_C DNA breaking-rejoining enzymes, C-termin 96.47
TIGR02224295 recomb_XerC tyrosine recombinase XerC. The phage i 95.67
cd00801357 INT_P4 Bacteriophage P4 integrase. P4-like integra 95.66
cd01187299 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, i 95.61
cd01193242 INT_IntI IntI (E2) integrases, site-specific tyros 95.48
PRK02436245 xerD site-specific tyrosine recombinase XerD-like 95.41
cd01192177 INT_P22_C P22-like integrases, site-specific recom 93.73
PF00589173 Phage_integrase: Phage integrase family; InterPro: 93.72
PRK05084357 xerS site-specific tyrosine recombinase XerS; Revi 93.63
PRK09870200 tyrosine recombinase; Provisional 93.63
cd01188188 INT_pAE1 pAE1 and related integrases, DNA breaking 93.53
PRK09692413 integrase; Provisional 93.43
cd01190260 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, i 93.14
cd01182162 INT_REC_C DNA breaking-rejoining enzymes, intergra 93.1
cd01189191 INT_phiLC3_C phiLC3 phage and phage-related integr 92.8
PRK00283299 xerD site-specific tyrosine recombinase XerD; Revi 92.77
cd00799287 INT_Cre Cre recombinase, C-terminal catalytic doma 92.54
TIGR02225291 recomb_XerD tyrosine recombinase XerD. The phage i 92.29
cd01194186 INT_Tn554A_C Tn544A and related transposases, DNA 92.29
cd01186180 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, 92.1
PRK00236297 xerC site-specific tyrosine recombinase XerC; Revi 91.99
PRK09871198 tyrosine recombinase; Provisional 91.44
cd01199205 INT_Tn1545_C Tn1545-related conjugative transposon 90.84
cd00796206 INT_Rci Rci recombinase, C-terminal catalytic doma 90.64
PRK01287358 xerC site-specific tyrosine recombinase XerC; Revi 90.44
cd01184181 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, 90.28
TIGR02249315 integrase_gron integron integrase. Members of this 89.92
cd01197180 INT_FimBE_C FimB and FimE and related proteins, DN 89.88
PF1437071 Topo_C_assoc: C-terminal topoisomerase domain; PDB 89.59
cd00800162 INT_Lambda_C Lambda integrase, C-terminal catalyti 89.16
cd01185299 INT_Tn4399 Tn4399 and related integrases, DNA brea 89.02
PHA03397363 vlf-1 very late expression factor 1; Provisional 88.41
cd01183196 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, 87.28
cd00798284 INT_XerDC XerD and XerC integrases, DNA breaking-r 86.58
cd01191196 INT_phiCTX_C phiCTX phage and phage-related integr 81.13
cd01196263 INT_VanD VanD integrase, IntD, and related integra 80.34
>KOG0981|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-199  Score=1583.63  Aligned_cols=495  Identities=68%  Similarity=1.088  Sum_probs=487.9

Q ss_pred             CccCCeecCCChhhHHHHHHHHHHhCCCCCCchhHhhhhHHHHHHHcccccccccccccCCCcHHHHHHHHhhHHHHHcC
Q psy17743          1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAM   80 (618)
Q Consensus         1 ~~ydg~~v~L~~~~EEvA~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~   80 (618)
                      |||||+||+|||++||||||||+||+|+|+++|+||+|||+|||++|+.+++++|++|++|||++||+||++++|+||+|
T Consensus       235 ~~YdGkpv~L~~eaEEvAtfyA~mle~ey~tk~vF~~NFf~Dwrk~m~~~~~~~Ik~l~kCDFt~i~~yf~~~~E~rK~m  314 (759)
T KOG0981|consen  235 FYYDGKPVDLTPEAEEVATFYAAMLEHEYATKEVFRKNFFNDWRKVMTVEEREVIKDLSKCDFTPIFEYFKEQKEKRKQM  314 (759)
T ss_pred             EEeCCccccCCHHHHHHHHHHHHHHhcchhccHHHHHHHHHHHHHHhhhhhhhhhccccccCCHHHHHHHHHHHHHHhhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccccEEEEcCeeeeecccccCCCcccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCC
Q psy17743         81 SKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGH  160 (618)
Q Consensus        81 t~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfrvepPGlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~Gh  160 (618)
                      |+|||+++|+|+++++++||||+||||+|+||||||||||||||||.||+||+||+||+|+||+||||+++|||+|||||
T Consensus       315 skEEK~~iKeEkek~ee~y~~cilDG~kEkigNFriEPPgLFRGRG~HPKmG~lKrRI~Pedi~iN~gkda~iP~pppGh  394 (759)
T KOG0981|consen  315 SKEEKLKIKEEKEKLEEKYGWCILDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRIMPEDITINCGKDAPIPEPPPGH  394 (759)
T ss_pred             CHHHHHHHHHHHHHHHHHcCeEEecCcHhhhcccccCCCccccCCCCCCcccchhcccchhheEEecCCCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeCCceeEEeeccCCcCCceeEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q psy17743        161 KWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL  240 (618)
Q Consensus       161 aWkdV~hdntvtWla~w~~hIqGr~QYvylh~~S~~k~~rD~~Kfe~ar~l~~~Lp~IR~~y~~dL~s~~~~~RqlA~Al  240 (618)
                      .|++|+|||||||||+|.++|||..+||||+|+|+++|++|++|||+||+|+.+|+.||++|++||+|++|..||+|||+
T Consensus       395 kWkEVrHDNTVTWLa~W~e~i~~~~KYi~L~~~SslKGesD~~KyE~ARrLk~~Id~IR~~Y~~d~ksk~m~~RQravAl  474 (759)
T KOG0981|consen  395 KWKEVRHDNTVTWLASWTENINGSFKYIMLNPSSSLKGESDKEKYETARRLKKYIDKIRATYTKDFKSKEMKVRQRAVAL  474 (759)
T ss_pred             cccccccCCeeeeeeecccccCCceeEEEecCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhccCC
Q psy17743        241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKG  320 (618)
Q Consensus       241 yLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~K~P  320 (618)
                      ||||+||||+|||+++++||||||||||++||+|+|+++++..+|.|||||||||||+|+|+|+++||+||..|+++|.|
T Consensus       475 Y~IDklALRAGnEKdedeADTVGCCsLrvehV~l~p~~~~~e~vv~FDFLGKDSIrYyN~VeVek~VyKnl~~F~~~K~~  554 (759)
T KOG0981|consen  475 YFIDKLALRAGNEKDEDEADTVGCCSLRVEHVTLHPPNKGKEFVVEFDFLGKDSIRYYNEVEVEKRVYKNLKIFMEGKKP  554 (759)
T ss_pred             HHHHHHHHhccCcccccccccccceeeeeeeeEeeCccccccceEEeeccCccceeeeeeccccHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCChhHHHHHHHHhcCCCeeeeeccccchHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q psy17743        321 SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH  400 (618)
Q Consensus       321 gd~LF~~l~s~~LN~yLkelm~glTAKvFRTynASvt~~~~L~~~~~~~~s~~ek~~~yn~Anr~VAilcNHqraV~K~~  400 (618)
                      ||+|||+|+|+.||+||+++|+|||||||||||||+|||++|..++.+.+++++|++.||+|||+|||||||||+|||+|
T Consensus       555 ~ddLFDrLdt~~LN~hL~~lM~GLTAKVFRTYNASiTlqeqL~~lt~p~~~v~~KIl~YnrANr~VAIlCNHQR~v~K~h  634 (759)
T KOG0981|consen  555 GDDLFDRLDTSSLNKHLQELMDGLTAKVFRTYNASITLQEQLDKLTNPDGNVAAKILSYNRANRTVAILCNHQRAVSKTH  634 (759)
T ss_pred             cchhhhhhchHHHHHHHHHHhccchhhhhhhcchhhHHHHHHHhccCCCccHHHHHHHHhhccceeeeeecccccCCccH
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CcccHHHHHHHHHHHHHHHHHhcccchhhccccceeeccCC
Q psy17743        401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGE------SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSK  474 (618)
Q Consensus       401 ~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k------~~~~~e~~~~~~~~~~~~i~k~~~~~~~ke~nk~vaLgTSk  474 (618)
                      ++||++|+++|+++++||.+++.+|..++++.+      ..+.+|+++++++++++||++|++|++||||||+|||||||
T Consensus       635 ~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~dkeenK~vALGTSK  714 (759)
T KOG0981|consen  635 EKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTDKEENKQVALGTSK  714 (759)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccchhhcceeeccccc
Confidence            999999999999999999999999999976533      34589999999999999999999999999999999999999


Q ss_pred             cCCCCCccchhhhheeeccCC
Q psy17743        475 LNYLDPRISVTWLASWTENVQ  495 (618)
Q Consensus       475 ~NY~DPRitVtWlkkw~vpI~  495 (618)
                      ||||||||||+||++|+|||.
T Consensus       715 iNYiDPRitvawcKk~dVPiE  735 (759)
T KOG0981|consen  715 LNYIDPRITVAWCKKHDVPIE  735 (759)
T ss_pred             ccccCCceeeeehhccCCcHH
Confidence            999999999999999999985

>smart00435 TOPEUc DNA Topoisomerase I (eukaryota) Back     alignment and domain information
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I Back     alignment and domain information
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>cd03490 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB Back     alignment and domain information
>PF02919 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA binding fragment; InterPro: IPR008336 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>PHA03101 DNA topoisomerase type I; Provisional Back     alignment and domain information
>PF01028 Topoisom_I: Eukaryotic DNA topoisomerase I, catalytic core; InterPro: IPR013500 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>KOG0981|consensus Back     alignment and domain information
>COG3569 Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3569 Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota) Back     alignment and domain information
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A Back     alignment and domain information
>PF01028 Topoisom_I: Eukaryotic DNA topoisomerase I, catalytic core; InterPro: IPR013500 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>PHA03101 DNA topoisomerase type I; Provisional Back     alignment and domain information
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I Back     alignment and domain information
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>cd03490 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB Back     alignment and domain information
>PF02919 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA binding fragment; InterPro: IPR008336 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>cd00397 DNA_BRE_C DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>TIGR02224 recomb_XerC tyrosine recombinase XerC Back     alignment and domain information
>cd00801 INT_P4 Bacteriophage P4 integrase Back     alignment and domain information
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains Back     alignment and domain information
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains Back     alignment and domain information
>PRK02436 xerD site-specific tyrosine recombinase XerD-like protein; Reviewed Back     alignment and domain information
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ] Back     alignment and domain information
>PRK05084 xerS site-specific tyrosine recombinase XerS; Reviewed Back     alignment and domain information
>PRK09870 tyrosine recombinase; Provisional Back     alignment and domain information
>cd01188 INT_pAE1 pAE1 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal domain Back     alignment and domain information
>PRK09692 integrase; Provisional Back     alignment and domain information
>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains Back     alignment and domain information
>cd01182 INT_REC_C DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain Back     alignment and domain information
>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed Back     alignment and domain information
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain Back     alignment and domain information
>TIGR02225 recomb_XerD tyrosine recombinase XerD Back     alignment and domain information
>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain Back     alignment and domain information
>cd01186 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 3, catalytic domain Back     alignment and domain information
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed Back     alignment and domain information
>PRK09871 tyrosine recombinase; Provisional Back     alignment and domain information
>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>cd00796 INT_Rci Rci recombinase, C-terminal catalytic domain Back     alignment and domain information
>PRK01287 xerC site-specific tyrosine recombinase XerC; Reviewed Back     alignment and domain information
>cd01184 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain Back     alignment and domain information
>TIGR02249 integrase_gron integron integrase Back     alignment and domain information
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain Back     alignment and domain information
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A Back     alignment and domain information
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain Back     alignment and domain information
>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains Back     alignment and domain information
>PHA03397 vlf-1 very late expression factor 1; Provisional Back     alignment and domain information
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain Back     alignment and domain information
>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains Back     alignment and domain information
>cd01191 INT_phiCTX_C phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>cd01196 INT_VanD VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1a35_A591 Human Topoisomerase IDNA COMPLEX Length = 591 0.0
1a35_A 591 Human Topoisomerase IDNA COMPLEX Length = 591 9e-48
1r49_A592 Human Topoisomerase I (Topo70) Double Mutant K532rY 0.0
1r49_A 592 Human Topoisomerase I (Topo70) Double Mutant K532rY 1e-47
1lpq_A564 Human Dna Topoisomerase I (70 Kda) In Non-Covalent 0.0
1lpq_A 564 Human Dna Topoisomerase I (70 Kda) In Non-Covalent 2e-47
1k4s_A592 Human Dna Topoisomerase I In Covalent Complex With 0.0
1k4s_A 592 Human Dna Topoisomerase I In Covalent Complex With 1e-47
1a31_A591 Human Reconstituted Dna Topoisomerase I In Covalent 0.0
1a31_A 591 Human Reconstituted Dna Topoisomerase I In Covalent 1e-47
1nh3_A563 Human Topoisomerase I Ara-C Complex Length = 563 0.0
1nh3_A 563 Human Topoisomerase I Ara-C Complex Length = 563 2e-47
1seu_A592 Human Dna Topoisomerase I (70 Kda) In Complex With 0.0
1seu_A 592 Human Dna Topoisomerase I (70 Kda) In Complex With 1e-47
1ej9_A563 Crystal Structure Of Human Topoisomerase I Dna Comp 0.0
1ej9_A 563 Crystal Structure Of Human Topoisomerase I Dna Comp 1e-47
1rrj_A565 Structural Mechanisms Of Camptothecin Resistance By 0.0
1rrj_A 565 Structural Mechanisms Of Camptothecin Resistance By 2e-47
1rr8_C565 Structural Mechanisms Of Camptothecin Resistance By 0.0
1rr8_C 565 Structural Mechanisms Of Camptothecin Resistance By 1e-47
2b9s_A432 Crystal Structure Of Heterodimeric L. Donovani Topo 1e-111
2b9s_A432 Crystal Structure Of Heterodimeric L. Donovani Topo 2e-34
1ois_A223 Yeast Dna Topoisomerase I, N-Terminal Fragment Leng 4e-44
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/493 (66%), Positives = 383/493 (77%), Gaps = 7/493 (1%)
Query: 5   GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
           GK MKLS  AEE+ATF+A+M++HEYTTKE F  NF KDWRK MT +E+ +IT+LSKCDF 
Sbjct: 70  GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 129
Query: 65  KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
           +M  YF  ++                    + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 130 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
           RG HPKMG LKRR+  EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG 
Sbjct: 190 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
           +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR  Y+ DWKSKEM++RQRAVALYFID
Sbjct: 250 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 309
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
           KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 310 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 369
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
           EKRVFKNLQLF+ENK+  DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL 
Sbjct: 370 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 429
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
           EL  PD +   KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI  K++Q+ DA R
Sbjct: 430 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 489
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
            LK AK      K  ++K + + KK A+ R            TD+EENK IALGTSKLN+
Sbjct: 490 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNF 549
Query: 478 LDPRISVTWLASW 490
           LDPRI+V W   W
Sbjct: 550 LDPRITVAWCKKW 562
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX Length = 591 Back     alignment and structure
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F Length = 592 Back     alignment and structure
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F Length = 592 Back     alignment and structure
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair Dna Duplex Containing An 8-Oxog Lesion Length = 564 Back     alignment and structure
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair Dna Duplex Containing An 8-Oxog Lesion Length = 564 Back     alignment and structure
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 592 Back     alignment and structure
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 592 Back     alignment and structure
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 591 Back     alignment and structure
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 591 Back     alignment and structure
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex Length = 563 Back     alignment and structure
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex Length = 563 Back     alignment and structure
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The Indolocarbazole Sa315f And Covalent Complex With A 22 Base Pair Dna Duplex Length = 592 Back     alignment and structure
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The Indolocarbazole Sa315f And Covalent Complex With A 22 Base Pair Dna Duplex Length = 592 Back     alignment and structure
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex Length = 563 Back     alignment and structure
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex Length = 563 Back     alignment and structure
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565 Back     alignment and structure
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565 Back     alignment and structure
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565 Back     alignment and structure
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565 Back     alignment and structure
>pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani Topoisomerase I-Vanadate-Dna Complex Length = 432 Back     alignment and structure
>pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani Topoisomerase I-Vanadate-Dna Complex Length = 432 Back     alignment and structure
>pdb|1OIS|A Chain A, Yeast Dna Topoisomerase I, N-Terminal Fragment Length = 223 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1a31_A591 Protein (topoisomerase I); topoisomerase I/DNA, DN 0.0
1a31_A 591 Protein (topoisomerase I); topoisomerase I/DNA, DN 4e-28
2b9s_A432 Topoisomerase I-like protein; vanadate complex, is 1e-164
2b9s_A432 Topoisomerase I-like protein; vanadate complex, is 4e-28
1ois_A223 DNA topoisomerase I; DNA-binding protein; HET: DNA 7e-95
2h7g_X314 DNA topoisomerase 1; type IB topoisomerase, DNA bi 1e-58
2h7g_X 314 DNA topoisomerase 1; type IB topoisomerase, DNA bi 8e-19
3m4a_A346 Putative type I topoisomerase; type IB, topib, pro 1e-49
3m4a_A 346 Putative type I topoisomerase; type IB, topib, pro 7e-18
2b9s_B62 DNA topoisomerase I-like protein; vanadate complex 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Length = 591 Back     alignment and structure
 Score =  523 bits (1348), Expect = 0.0
 Identities = 352/493 (71%), Positives = 408/493 (82%), Gaps = 7/493 (1%)

Query: 5   GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
           GK MKLS  AEE+ATF+A+M++HEYTTKE F  NF KDWRK MT +E+ +IT+LSKCDF 
Sbjct: 70  GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 129

Query: 65  KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
           +M  YF  ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 130 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 189

Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
           RG HPKMG LKRR+  EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG 
Sbjct: 190 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 249

Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
           +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR  Y+ DWKSKEM++RQRAVALYFID
Sbjct: 250 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 309

Query: 245 KLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
           KLALRAGNEK+E   ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 310 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 369

Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
           EKRVFKNLQLF+ENK+  DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL 
Sbjct: 370 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 429

Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
           EL  PD +   KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI  K++Q+ DA R
Sbjct: 430 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 489

Query: 424 ALKDAKK------AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
            LK AK         ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 490 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 549

Query: 478 LDPRISVTWLASW 490
           LDPRI+V W   W
Sbjct: 550 LDPRITVAWCKKW 562
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Length = 591 Back     alignment and structure
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 432 Back     alignment and structure
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 432 Back     alignment and structure
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Length = 223 Back     alignment and structure
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A Length = 314 Back     alignment and structure
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A Length = 314 Back     alignment and structure
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A* Length = 346 Back     alignment and structure
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A* Length = 346 Back     alignment and structure
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 62 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
1a31_A591 Protein (topoisomerase I); topoisomerase I/DNA, DN 100.0
2b9s_A432 Topoisomerase I-like protein; vanadate complex, is 100.0
1ois_A223 DNA topoisomerase I; DNA-binding protein; HET: DNA 100.0
3m4a_A346 Putative type I topoisomerase; type IB, topib, pro 100.0
2h7g_X314 DNA topoisomerase 1; type IB topoisomerase, DNA bi 100.0
1a31_A 591 Protein (topoisomerase I); topoisomerase I/DNA, DN 99.97
2b9s_A432 Topoisomerase I-like protein; vanadate complex, is 99.96
2b9s_B62 DNA topoisomerase I-like protein; vanadate complex 99.76
2h7g_X 314 DNA topoisomerase 1; type IB topoisomerase, DNA bi 99.76
3m4a_A 346 Putative type I topoisomerase; type IB, topib, pro 99.74
1ois_A223 DNA topoisomerase I; DNA-binding protein; HET: DNA 97.67
4a8e_A292 XER A, probable tyrosine recombinase XERC-like; ce 95.77
1z1b_A356 Integrase; protein-DNA complex, DNA binding protei 95.18
1xo0_A324 Recombinase CRE; CRE recombinase, holliday junctio 94.85
1a0p_A290 Site-specific recombinase XERD; DNA binding, DNA r 94.71
1ae9_A179 Lambda integrase; DNA recombination, site-specific 94.58
3nkh_A244 Integrase; alpha-fold, MRSA protein, structural ge 94.44
1z19_A283 Integrase; protein-DNA complex, DNA binding protei 92.88
2b9s_B62 DNA topoisomerase I-like protein; vanadate complex 89.06
2a3v_A320 Site-specific recombinase INTI4; protein-DNA compl 87.36
1aih_A170 HP1 integrase; DNA integration, recombination; 2.5 82.65
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-191  Score=1544.53  Aligned_cols=494  Identities=71%  Similarity=1.149  Sum_probs=401.0

Q ss_pred             CccCCeecCCChhhHHHHHHHHHHhCCCCCCchhHhhhhHHHHHHHcccccccccccccCCCcHHHHHHHHhhHHHHHcC
Q psy17743          1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAM   80 (618)
Q Consensus         1 ~~ydg~~v~L~~~~EEvA~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~   80 (618)
                      |+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|+.++++.|++|++||||+||+||++++|+||+|
T Consensus        66 ~~Ydg~pv~L~~~~EEvAtf~a~ml~t~~~~~~~F~~NFf~df~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~  145 (591)
T 1a31_A           66 FYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQM  145 (591)
T ss_dssp             CEETTEECCCCHHHHHHHHHHHTTTTSGGGGCHHHHHHHHHHHHHHSCHHHHHHCCCGGGEECHHHHHHHHHHHHHHHSC
T ss_pred             eeECCEeccCCHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHhhhcCCcccCchhhCCCHHHHHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccccEEEEcCeeeeecccccCCCcccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCC
Q psy17743         81 SKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGH  160 (618)
Q Consensus        81 t~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfrvepPGlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~Gh  160 (618)
                      |+|||+++|+++++++++||||+||||+|+||||||||||||||||+||+||+||+||+|+||||||+++++||+|||||
T Consensus       146 s~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfriEPPgLFrGRG~HPk~G~lK~RV~pedvtiNi~k~a~iP~pp~Gh  225 (591)
T 1a31_A          146 SKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGH  225 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSEEEETTEEEEBSCCBCCCSEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCCCSTTC
T ss_pred             CHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccCCCccccCCCCCCCCCccccccChhhhhhhhccCCCCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeCCceeEEeeccCCcCCceeEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q psy17743        161 KWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL  240 (618)
Q Consensus       161 aWkdV~hdntvtWla~w~~hIqGr~QYvylh~~S~~k~~rD~~Kfe~ar~l~~~Lp~IR~~y~~dL~s~~~~~RqlA~Al  240 (618)
                      ||++|+|||||||||+|++|||||+||+|++|||+|+++||+.||++|++|+.+||+||++|.+||++++|++||+|+||
T Consensus       226 aWkdV~hd~tvtWia~w~~hIqGRkQY~Yh~~~s~wk~~rD~~Kfe~ar~l~~~Lp~IR~~~~~dL~s~~~r~rqlAval  305 (591)
T 1a31_A          226 KWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVAL  305 (591)
T ss_dssp             CCSEEECCTTSCCSEEEECTTTCCEEEECBCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CcceeccCCceEEEEeChHHhcCCeeEEEecCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCcccccc-cCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhccC
Q psy17743        241 YFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKK  319 (618)
Q Consensus       241 yLID~laLRvGnEkya~e-ndTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~K~  319 (618)
                      ||||.+|||||||+|+++ |+||||||||++||+|++++||++++|+|+|+|||||+|+++|.||++||+||+.|+++|.
T Consensus       306 ~LID~~alRvGnekya~e~ndTvGl~TLR~eHV~l~~~~~g~~~~V~FdF~GKdgir~~~~V~vD~~v~k~L~~f~~~K~  385 (591)
T 1a31_A          306 YFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQ  385 (591)
T ss_dssp             HHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTTTCC
T ss_pred             HHHHHhhhhcCCcccccccCCCeeeecccccceEEeccccCCCCeEEEEEecCCceEEEEEEccCHHHHHHHHHHHhCCC
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCChhHHHHHHHHhcCCCeeeeeccccchHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q psy17743        320 GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKS  399 (618)
Q Consensus       320 Pgd~LF~~l~s~~LN~yLkelm~glTAKvFRTynASvt~~~~L~~~~~~~~s~~ek~~~yn~Anr~VAilcNHqraV~K~  399 (618)
                      ||++||+.|+|++||+||+++|||||||||||||||+||+++|.+++...+|+++++++||+||++||+||||||||||+
T Consensus       386 Pg~~LF~~l~s~~lN~yLkelmgglTAKdFRTwnASvta~~~L~~~~~~~~s~~ek~~~yn~Anr~VAiLCNHqR~vpK~  465 (591)
T 1a31_A          386 PEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKT  465 (591)
T ss_dssp             TTSBTTTTCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------
T ss_pred             CchHhhccCCHHHHHHHHHHHcCCCceeeeccCchHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999988766699999999999999999999999999999


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CcccHHHHHHHHHHHHHHHHHhcccchhhccccceeeccC
Q psy17743        400 HDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE------SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTS  473 (618)
Q Consensus       400 ~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k------~~~~~e~~~~~~~~~~~~i~k~~~~~~~ke~nk~vaLgTS  473 (618)
                      |++||+||++||+++++|+.+++.+|+.++++.+      .+.++|+++++|+++++||++|++|++|||+||+||||||
T Consensus       466 ~~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTS  545 (591)
T 1a31_A          466 FEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTS  545 (591)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhhhhhhhcCeeeecccc
Confidence            9999999999999999999999999998865433      3457899999999999999999999999999999999999


Q ss_pred             CcCCCCCccchhhhheeeccC
Q psy17743        474 KLNYLDPRISVTWLASWTENV  494 (618)
Q Consensus       474 k~NY~DPRitVtWlkkw~vpI  494 (618)
                      |||||||||||+||++++|||
T Consensus       546 KiNYlDPRItvawckk~~VPi  566 (591)
T 1a31_A          546 KLNYLDPRITVAWCKKWGVPI  566 (591)
T ss_dssp             CTTTSCHHHHHHHHHHTTCCG
T ss_pred             hhhccCchhheeehhhcCCCH
Confidence            999999999999999999933
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Back     alignment and structure
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Back     alignment and structure
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A* Back     alignment and structure
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A Back     alignment and structure
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Back     alignment and structure
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Back     alignment and structure
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Back     alignment and structure
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A Back     alignment and structure
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A* Back     alignment and structure
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Back     alignment and structure
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi} Back     alignment and structure
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3* Back     alignment and structure
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ... Back     alignment and structure
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1 Back     alignment and structure
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1 Back     alignment and structure
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* Back     alignment and structure
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Back     alignment and structure
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} Back     alignment and structure
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1k4ta3230 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase 1e-105
d1k4ta3230 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase 5e-06
d1oisa_223 e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-te 1e-104
d1oisa_223 e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-te 8e-06
d1k4ta2263 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top 1e-88
d1k4ta2 263 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top 2e-28
d1k4ta2263 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top 8e-05
d1k4ta2263 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top 0.002
d1a41a_230 d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, cat 5e-46
d1a41a_ 230 d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, cat 1e-16
d1k4ta172 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I 4e-15
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 230 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  314 bits (807), Expect = e-105
 Identities = 134/187 (71%), Positives = 156/187 (83%)

Query: 5   GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
           GK MKLS  AEE+ATF+A+M++HEYTTKE F  NF KDWRK MT +E+ +IT+LSKCDF 
Sbjct: 44  GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 103

Query: 65  KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
           +M  YF  ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 163

Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
           RG HPKMG LKRR+  EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG 
Sbjct: 164 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 223

Query: 185 VKYIMLN 191
           +KYIMLN
Sbjct: 224 IKYIMLN 230
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 230 Back     information, alignment and structure
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 223 Back     information, alignment and structure
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 223 Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Back     information, alignment and structure
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Length = 230 Back     information, alignment and structure
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Length = 230 Back     information, alignment and structure
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1k4ta3230 Eukaryotic DNA topoisomerase I, N-terminal DNA-bin 100.0
d1oisa_223 Eukaryotic DNA topoisomerase I, N-terminal DNA-bin 100.0
d1k4ta2263 Eukaryotic DNA topoisomerase I, catalytic core {Hu 100.0
d1a41a_230 Eukaryotic DNA topoisomerase I, catalytic core {Va 100.0
d1k4ta2 263 Eukaryotic DNA topoisomerase I, catalytic core {Hu 99.93
d1k4ta172 Eukaryotic DNA topoisomerase I, dispensable insert 99.19
d1a41a_ 230 Eukaryotic DNA topoisomerase I, catalytic core {Va 99.0
d1oisa_223 Eukaryotic DNA topoisomerase I, N-terminal DNA-bin 97.61
d1k4ta3230 Eukaryotic DNA topoisomerase I, N-terminal DNA-bin 97.31
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-88  Score=660.60  Aligned_cols=191  Identities=70%  Similarity=1.216  Sum_probs=189.2

Q ss_pred             CccCCeecCCChhhHHHHHHHHHHhCCCCCCchhHhhhhHHHHHHHcccccccccccccCCCcHHHHHHHHhhHHHHHcC
Q psy17743          1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAM   80 (618)
Q Consensus         1 ~~ydg~~v~L~~~~EEvA~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~   80 (618)
                      |+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|+.++++.|++|++|||++||+||++++|+||+|
T Consensus        40 ~~YdG~pv~L~p~~EEvAtf~a~~l~t~y~~~~~F~kNFf~Df~~~l~~~~~~~i~~f~kcDF~~i~~~~~~~ke~kK~~  119 (230)
T d1k4ta3          40 FYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQM  119 (230)
T ss_dssp             CEETTEECCCCHHHHHHHHHHHHTTTSGGGGCHHHHHHHHHHHHHHSCHHHHHHCCCSTTEECHHHHHHHHHHHHHHTTC
T ss_pred             EEECCEEccCCHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHhCcccccccCchhhCCCHHHHHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccccEEEEcCeeeeecccccCCCcccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCC
Q psy17743         81 SKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGH  160 (618)
Q Consensus        81 t~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfrvepPGlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~Gh  160 (618)
                      |+|||+++|+++++++++||||+|||++|+||||||||||||||||+||+||+||+||+|+|||||||++|+||+|||||
T Consensus       120 skeEKk~~Keek~~~~~~Y~~~~vDG~kekVGNfriEPPGLFrGRG~HPK~G~lK~RI~PeDVtiNi~kda~vP~pp~Gh  199 (230)
T d1k4ta3         120 SKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGH  199 (230)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSEEEETTEEEEBSCCBCCCCEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCCCSTTC
T ss_pred             CHHHHHHHHHHHHhhhccccEEEECCcEEEeccccccCCcccccCCCCCCCCccccccChhheEEEcCCCCCCCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeCCceeEEeeccCCcCCceeEEEec
Q psy17743        161 KWKEVRHDNQVTWLASWTENVQGQVKYIMLN  191 (618)
Q Consensus       161 aWkdV~hdntvtWla~w~~hIqGr~QYvylh  191 (618)
                      +|++|+|||||||||+|.++|+|+.|||||+
T Consensus       200 ~WkeV~HDntVtWLA~W~dnI~~~~KYV~L~  230 (230)
T d1k4ta3         200 KWKEVRHDNKVTWLVSWTENIQGSIKYIMLN  230 (230)
T ss_dssp             CCSEEECCTTSCCSEEEECTTTCCEEEECBC
T ss_pred             CcceeEeCCCceEEEEeeeccCCceEEEEeC
Confidence            9999999999999999999999999999985
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Back     information, alignment and structure
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure