Psyllid ID: psy17773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD
Secondary Structure (PSIPRED)
cccccccccccEEEcccccccccEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccEEEEcccEEEEcccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccccEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mshyrnaaeipiilvgtqdsdsFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSirsrvpgnltcadcaeagptwaSLNLGLLLCIQccgvhrclgahVSRVRsleldewpesnpriIDEARARRLASDLKRCSYYETCatyglnvdrvfqd
Flexible Loop (DISEMBL)
mshyrnaaEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRvrsleldewpesnpriidEARARRLASDLKRCSyyetcatyglnvdrvfqd
Low Complexity Region (SEG)
MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD
Disordered region (IsUnstruct)
*******AEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRV***
Disordered Region (DISOPRED)
*******************SDSFELLIVSLDNKQWQFEAANSEERDDWIAAI************************TCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCA***L********
Disordered Region (DISEMBL)
MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD
Disordered Region (DISPRO)
********EIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSY*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q9NGC3	995	Centaurin-gamma-1A OS=Dro	no	N/A	0.642	0.106	0.566	8e-37
Q6NRL1	864	Arf-GAP with GTPase, ANK	N/A	N/A	0.642	0.122	0.504	1e-29
Q3UHD9	1186	Arf-GAP with GTPase, ANK	yes	N/A	0.624	0.086	0.516	1e-29
Q8CGU4	1186	Arf-GAP with GTPase, ANK	yes	N/A	0.624	0.086	0.516	1e-29
Q9UPQ3	857	Arf-GAP with GTPase, ANK	no	N/A	0.666	0.128	0.496	8e-29
Q99490	1192	Arf-GAP with GTPase, ANK	no	N/A	0.624	0.086	0.508	8e-29
Q8BXK8	857	Arf-GAP with GTPase, ANK	no	N/A	0.666	0.128	0.488	6e-28
Q96P47	875	Arf-GAP with GTPase, ANK	no	N/A	0.624	0.117	0.483	2e-27
Q5VW22	663	Arf-GAP with GTPase, ANK	no	N/A	0.6	0.149	0.508	8e-27
Q5VUJ5	663	Arf-GAP with GTPase, ANK	no	N/A	0.6	0.149	0.5	7e-26

>sp|Q9NGC3|CEG1A_DROME Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=2 SV=2

 Score =  152 bits (385), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 87/120 (72%), Gaps = 14/120 (11%)

Query: 19  DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT--------------AS 64
           D+D +E  IVSLD+KQW FEAANSEERD+W+AA++Q+I  SLQ+              A+
Sbjct: 644 DNDGYEFYIVSLDSKQWHFEAANSEERDEWVAAVEQEIFKSLQSIESSKTKQATSTDLAA 703

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           + +IR RVPGN  C DC    P WASLNLG+L+CI+C GVHR LG+H+S+VRSL LD+WP
Sbjct: 704 MLAIRQRVPGNGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWP 763

GTPase-activating protein for the ADP ribosylation factor family.
Drosophila melanogaster (taxid: 7227)

>sp|Q6NRL1|AGAP1_XENLA Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis GN=agap1 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 17/123 (13%)

Query: 18  QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT--------------- 62
           +  ++FE +IVSL ++ W FEA + EERD W+ AI+ QIL+SLQ+               
Sbjct: 552 EQEENFEFIIVSLTSQSWHFEATSYEERDAWVQAIESQILASLQSCESSKNKSRLTSQNE 611

Query: 63  -ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
             +LQSIR+ +PGN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct: 612 ALALQSIRN-LPGNSHCVDCDAQSPDWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 670

Query: 122 EWP 124
           +WP
Sbjct: 671 DWP 673

GTPase-activating protein. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Xenopus laevis (taxid: 8355)

>sp|Q3UHD9|AGAP2_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Agap2 PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 79/120 (65%), Gaps = 17/120 (14%)

Query: 21  DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ----------------TAS 64
           ++FE LIVS   + W FEAA+ EERD W+ AI+ QIL+SLQ                  +
Sbjct: 868 ENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQCCESSKVKLRTDSQSEAVA 927

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +Q+IR+   GN TC DC    PTWASLNLG L+CI+C G+HR LG H+SRVRSL+LD+WP
Sbjct: 928 IQAIRN-AKGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWP 986

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. Aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase.

Mus musculus (taxid: 10090)

>sp|Q8CGU4|AGAP2_RAT Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Agap2 PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 79/120 (65%), Gaps = 17/120 (14%)

Query: 21  DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ----------------TAS 64
           ++FE LIVS   + W FEAA+ EERD W+ AI+ QIL+SLQ                  +
Sbjct: 868 ENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQCCESSKVKLRTDSQSEAVA 927

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +Q+IR+   GN TC DC    PTWASLNLG L+CI+C G+HR LG H+SRVRSL+LD+WP
Sbjct: 928 IQAIRN-AKGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWP 986

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. Aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase.

Rattus norvegicus (taxid: 10116)

>sp|Q9UPQ3|AGAP1_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4

 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 82/129 (63%), Gaps = 19/129 (14%)

Query: 14  LVGT--QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT--------- 62
           L GT  +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+         
Sbjct: 543 LSGTAEEQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSR 602

Query: 63  -------ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRV 115
                   +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRV
Sbjct: 603 LTSQSEAMALQSIRN-MRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRV 661

Query: 116 RSLELDEWP 124
           RSL+LD+WP
Sbjct: 662 RSLDLDDWP 670

GTPase-activating protein for ARF1 and, to a lesser extent, ARF5. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Homo sapiens (taxid: 9606)

>sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2

 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 17/120 (14%)

Query: 21  DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ----------------TAS 64
           ++FE LIVS   + W FEAA+ EERD W+ AI+ QIL+SLQ                  +
Sbjct: 874 ENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQCCESSKVKLRTDSQSEAVA 933

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +Q+IR+   GN  C DC    PTWASLNLG L+CI+C G+HR LG H+SRVRSL+LD+WP
Sbjct: 934 IQAIRN-AKGNSICVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWP 992

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Isoform 1 participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. It aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase. Isoform 2 does not stimulate PI3 kinase but may protect cells from apoptosis by stimulating Akt. It also regulates the adapter protein 1 (AP-1)-dependent trafficking of proteins in the endosomal system. It seems to be oncogenic. It is overexpressed in cancer cells, prevents apoptosis and promotes cancer cell invasion.

Homo sapiens (taxid: 9606)

>sp|Q8BXK8|AGAP1_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Agap1 PE=2 SV=1

 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 19/129 (14%)

Query: 14  LVGT--QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT--------- 62
           L GT  +  ++ E +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+         
Sbjct: 543 LSGTAEEQEENLEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSR 602

Query: 63  -------ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRV 115
                   +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRV
Sbjct: 603 LTSQSEAMALQSIRN-MRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRV 661

Query: 116 RSLELDEWP 124
           RSL+LD+WP
Sbjct: 662 RSLDLDDWP 670

GTPase-activating protein for ARF1 and, to a lesser extent, ARF5. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Mus musculus (taxid: 10090)

>sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 80/120 (66%), Gaps = 17/120 (14%)

Query: 21  DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ----------------TAS 64
           +SFE ++VSL  + W FEA+ +EER+ W+ ++Q QIL+SLQ                  +
Sbjct: 569 ESFEFVVVSLTGQTWHFEASTAEERELWVQSVQAQILASLQGCRSAKDKTRLGNQNAALA 628

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +Q++R+ V GN  C DC    P WASLNLG L+CI+C G+HR LGAH+SRVRSL+LD+WP
Sbjct: 629 VQAVRT-VRGNSFCIDCDAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDWP 687

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.

Homo sapiens (taxid: 9606)

>sp|Q5VW22|AGAP6_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6 OS=Homo sapiens GN=AGAP6 PE=2 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 74/116 (63%), Gaps = 17/116 (14%)

Query: 25  LLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT----------------ASLQSI 68
            +IVS   + W FEA   EERD W+ AIQ QIL+SLQ+                 +LQSI
Sbjct: 388 FMIVSATGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSQLTSQSEAMALQSI 447

Query: 69  RSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           ++ + GN  C DC    P WASLNLG+L+CI+C G+HR LG H+SRVRSLELD+WP
Sbjct: 448 QN-MRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGPHLSRVRSLELDDWP 502

Putative GTPase-activating protein.

Homo sapiens (taxid: 9606)

>sp|Q5VUJ5|AGAP7_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 7 OS=Homo sapiens GN=AGAP7 PE=2 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 73/116 (62%), Gaps = 17/116 (14%)

Query: 25  LLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT----------------ASLQSI 68
            +IVS   + W FEA   EERD W+ AIQ QIL+SLQ+                 +LQSI
Sbjct: 388 FMIVSATGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSQLTSQSEAMALQSI 447

Query: 69  RSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           ++ + GN  C DC    P WASLNLG+L+CI+C G+HR LG  +SRVRSLELD+WP
Sbjct: 448 QN-MRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWP 502

Putative GTPase-activating protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
270001122	570	hypothetical protein TcasGA2_TC011430 [T	0.751	0.217	0.489	5e-42
158299912	889	AGAP009160-PA [Anopheles gambiae str. PE	0.642	0.119	0.616	8e-38
170060156	860	centaurin-gamma 1A [Culex quinquefasciat	0.678	0.130	0.593	1e-37
157130881	759	centaurin gamma [Aedes aegypti] gi|10888	0.642	0.139	0.616	1e-37
189241692	599	PREDICTED: similar to AGAP009160-PA [Tri	0.642	0.176	0.603	3e-37
328715502	754	PREDICTED: centaurin-gamma-1A-like [Acyr	0.690	0.151	0.548	3e-37
312385031	1502	hypothetical protein AND_01257 [Anophele	0.642	0.070	0.6	1e-36
427783795	867	Putative gtpase-activating protein centa	0.654	0.124	0.568	2e-36
427780055	895	Putative gtpase-activating protein centa	0.654	0.120	0.568	2e-36
427783793	867	Putative gtpase-activating protein centa	0.654	0.124	0.568	2e-36

>gi|270001122|gb|EEZ97569.1| hypothetical protein TcasGA2_TC011430 [Tribolium castaneum]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 109/184 (59%), Gaps = 60/184 (32%)

Query: 1   MSHYRNAAEIPIILVGTQDS---------------------------------------- 20
           MSHYRN+AEIP+ILVGTQD+                                        
Sbjct: 180 MSHYRNSAEIPLILVGTQDAISENNPRVIDDSRARKLANDLKRCSYYETCATYGLNVERV 239

Query: 21  -----DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ-------------- 61
                D +E  IVSLDNKQW FEA++S+ERDDW+AAI+QQIL+SLQ              
Sbjct: 240 FQDDPDGYEFFIVSLDNKQWHFEASSSDERDDWVAAIEQQILNSLQLNESSKGKKQNNPM 299

Query: 62  -TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
             A++QSIRSRVPGN  C DC    P WASLNLG+L+CI+C G+HR LG+H+SRVRSL+L
Sbjct: 300 EAATIQSIRSRVPGNGFCVDCDATNPDWASLNLGVLMCIECSGIHRNLGSHISRVRSLDL 359

Query: 121 DEWP 124
           DEWP
Sbjct: 360 DEWP 363

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299912|ref|XP_319921.4| AGAP009160-PA [Anopheles gambiae str. PEST] gi|157013746|gb|EAA14733.4| AGAP009160-PA [Anopheles gambiae str. PEST]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 87/120 (72%), Gaps = 14/120 (11%)

Query: 19  DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------------TAS 64
           DSD FE  IVSLDNKQW FEA+NSEERD+W++ I+Q+I  SLQ               AS
Sbjct: 564 DSDGFEFYIVSLDNKQWHFEASNSEERDEWVSVIEQEIFKSLQGIESSKSKPLNPSDIAS 623

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +QSIRSRVPGN  C DC    P WASLNLG+L+CI+C GVHR LG+H+S+VRSL LDEWP
Sbjct: 624 MQSIRSRVPGNGYCVDCDSPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDEWP 683

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170060156|ref|XP_001865678.1| centaurin-gamma 1A [Culex quinquefasciatus] gi|167878685|gb|EDS42068.1| centaurin-gamma 1A [Culex quinquefasciatus]

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/128 (59%), Positives = 91/128 (71%), Gaps = 16/128 (12%)

Query: 11  PIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------- 61
           P ++V   DSD FE  IVSLDNKQW FEA+NSEERD+W++ I+Q+I  SLQ         
Sbjct: 529 PAVVV--TDSDGFEFYIVSLDNKQWHFEASNSEERDEWVSVIEQEIFKSLQGIESSKSKP 586

Query: 62  -----TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVR 116
                 AS+QSIRSRVPGN  C DC    P WASLNLG+L+CI+C GVHR LG+H+S+VR
Sbjct: 587 LNPSDIASMQSIRSRVPGNGYCVDCDSPNPEWASLNLGVLMCIECSGVHRNLGSHISKVR 646

Query: 117 SLELDEWP 124
           SL LDEWP
Sbjct: 647 SLGLDEWP 654

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130881|ref|XP_001662044.1| centaurin gamma [Aedes aegypti] gi|108881886|gb|EAT46111.1| AAEL002660-PA, partial [Aedes aegypti]

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/120 (61%), Positives = 87/120 (72%), Gaps = 14/120 (11%)

Query: 19  DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------------TAS 64
           DSD FE  IVSLDNKQW FEA+NSEERD+W++ I+Q+I  SLQ               AS
Sbjct: 434 DSDGFEFYIVSLDNKQWHFEASNSEERDEWVSVIEQEIFKSLQGIESSKSKPLNPSDIAS 493

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +QSIRSRVPGN  C DC    P WASLNLG+L+CI+C GVHR LG+H+S+VRSL LDEWP
Sbjct: 494 MQSIRSRVPGNGYCVDCDSPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDEWP 553

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241692|ref|XP_969889.2| PREDICTED: similar to AGAP009160-PA [Tribolium castaneum]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 90/121 (74%), Gaps = 15/121 (12%)

Query: 19  DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ---------------TA 63
           + D +E  IVSLDNKQW FEA++S+ERDDW+AAI+QQIL+SLQ                A
Sbjct: 272 NPDGYEFFIVSLDNKQWHFEASSSDERDDWVAAIEQQILNSLQLNESSKGKKQNNPMEAA 331

Query: 64  SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 123
           ++QSIRSRVPGN  C DC    P WASLNLG+L+CI+C G+HR LG+H+SRVRSL+LDEW
Sbjct: 332 TIQSIRSRVPGNGFCVDCDATNPDWASLNLGVLMCIECSGIHRNLGSHISRVRSLDLDEW 391

Query: 124 P 124
           P
Sbjct: 392 P 392

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328715502|ref|XP_001951726.2| PREDICTED: centaurin-gamma-1A-like [Acyrthosiphon pisum]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 97/133 (72%), Gaps = 19/133 (14%)

Query: 18  QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASL------------ 65
           +D+D +E LIVSLDNKQWQFEA +SE+RD+W+AAI+QQIL+SLQ+  +            
Sbjct: 442 EDTDGYEFLIVSLDNKQWQFEANSSEDRDEWVAAIEQQILNSLQSNEINKVNVGGKFGSS 501

Query: 66  -------QSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSL 118
                  Q+IR+RVPGN  CADC    P WASLNLG+L+CI+C GVHR LG+H+S+VRSL
Sbjct: 502 YNRAEDVQNIRTRVPGNGQCADCNSPNPDWASLNLGILMCIECSGVHRNLGSHISKVRSL 561

Query: 119 ELDEWPESNPRII 131
           +LD WP S+ +++
Sbjct: 562 DLDGWPPSHLKVM 574

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385031|gb|EFR29622.1| hypothetical protein AND_01257 [Anopheles darlingi]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 14/120 (11%)

Query: 19  DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------------TAS 64
           D+D FE  IVSLDNKQW FEA++SEERD+W++ I+Q+I  SLQ               AS
Sbjct: 630 DADGFEFYIVSLDNKQWHFEASSSEERDEWVSVIEQEIFKSLQGIESSKSKPLNPSDIAS 689

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +QSIRSRVPGN  C DC    P WASLNLG+L+CI+C GVHR LG+H+S+VRSL LDEWP
Sbjct: 690 MQSIRSRVPGNGYCVDCDSPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDEWP 749

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783795|gb|JAA57349.1| Putative gtpase-activating protein centaurin gamma [Rhipicephalus pulchellus]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 92/125 (73%), Gaps = 17/125 (13%)

Query: 17  TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------------- 61
           T+DSD +E +IVSLDNKQWQFEA+N ++R+ W++AI+QQILSSLQ               
Sbjct: 550 TEDSDGYEFVIVSLDNKQWQFEASNGDDREGWVSAIEQQILSSLQGNESSKAKGRMNSIA 609

Query: 62  --TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
              +S+Q+IR+ VPGN  CADC    P WASLNLG L+CI+C G+HR LG+H+SRVRSL+
Sbjct: 610 DSASSIQAIRTSVPGNSHCADCDTPQPDWASLNLGTLICIECSGIHRNLGSHISRVRSLD 669

Query: 120 LDEWP 124
           LD+WP
Sbjct: 670 LDDWP 674

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780055|gb|JAA55479.1| Putative gtpase-activating protein centaurin gamma [Rhipicephalus pulchellus]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 92/125 (73%), Gaps = 17/125 (13%)

Query: 17  TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------------- 61
           T+DSD +E +IVSLDNKQWQFEA+N ++R+ W++AI+QQILSSLQ               
Sbjct: 550 TEDSDGYEFVIVSLDNKQWQFEASNGDDREGWVSAIEQQILSSLQGNESSKAKGRMNSIA 609

Query: 62  --TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
              +S+Q+IR+ VPGN  CADC    P WASLNLG L+CI+C G+HR LG+H+SRVRSL+
Sbjct: 610 DSASSIQAIRTSVPGNSHCADCDTPQPDWASLNLGTLICIECSGIHRNLGSHISRVRSLD 669

Query: 120 LDEWP 124
           LD+WP
Sbjct: 670 LDDWP 674

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783793|gb|JAA57348.1| Putative gtpase-activating protein centaurin gamma [Rhipicephalus pulchellus]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 92/125 (73%), Gaps = 17/125 (13%)

Query: 17  TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ--------------- 61
           T+DSD +E +IVSLDNKQWQFEA+N ++R+ W++AI+QQILSSLQ               
Sbjct: 550 TEDSDGYEFVIVSLDNKQWQFEASNGDDREGWVSAIEQQILSSLQGNESSKAKGRMNSIA 609

Query: 62  --TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
              +S+Q+IR+ VPGN  CADC    P WASLNLG L+CI+C G+HR LG+H+SRVRSL+
Sbjct: 610 DSASSIQAIRTSVPGNSHCADCDTPQPDWASLNLGTLICIECSGIHRNLGSHISRVRSLD 669

Query: 120 LDEWP 124
           LD+WP
Sbjct: 670 LDDWP 674

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
FB|FBgn0028509	995	CenG1A "Centaurin gamma 1A" [D	0.642	0.106	0.566	2.1e-37
UNIPROTKB|F5GXM9	696	AGAP1 "Arf-GAP with GTPase, AN	0.642	0.152	0.495	1.3e-31
UNIPROTKB|F1P7C6	857	F1P7C6 "Uncharacterized protei	0.642	0.123	0.495	2.5e-31
UNIPROTKB|F1MGL2	807	AGAP1 "Uncharacterized protein	0.642	0.131	0.495	2.5e-31
UNIPROTKB|Q9UPQ3	857	AGAP1 "Arf-GAP with GTPase, AN	0.642	0.123	0.495	3.2e-31
UNIPROTKB|F1NWZ1	860	AGAP1 "Uncharacterized protein	0.642	0.123	0.495	3.2e-31
UNIPROTKB|E7EUN2	1069	AGAP1 "Arf-GAP with GTPase, AN	0.642	0.099	0.495	6.8e-31
UNIPROTKB|F1M838	750	Agap1 "Protein Agap1" [Rattus	0.642	0.141	0.487	1.1e-30
UNIPROTKB|F1LRF1	803	Agap1 "Protein Agap1" [Rattus	0.642	0.132	0.487	1.4e-30
MGI|MGI:2653690	857	Agap1 "ArfGAP with GTPase doma	0.642	0.123	0.487	1.8e-30

FB|FBgn0028509 CenG1A "Centaurin gamma 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
 Identities = 68/120 (56%), Positives = 87/120 (72%)

Query:    19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT--------------AS 64
             D+D +E  IVSLD+KQW FEAANSEERD+W+AA++Q+I  SLQ+              A+
Sbjct:   644 DNDGYEFYIVSLDSKQWHFEAANSEERDEWVAAVEQEIFKSLQSIESSKTKQATSTDLAA 703

Query:    65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
             + +IR RVPGN  C DC    P WASLNLG+L+CI+C GVHR LG+H+S+VRSL LD+WP
Sbjct:   704 MLAIRQRVPGNGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWP 763

GO:0008060 "ARF GTPase activator activity" evidence=ISS;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F5GXM9 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
 Identities = 61/123 (49%), Positives = 79/123 (64%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   388 EQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 447

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   448 AMALQSIRN-MRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 506

Query:   122 EWP 124
             +WP
Sbjct:   507 DWP 509

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1P7C6 F1P7C6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 302 (111.4 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 61/123 (49%), Positives = 79/123 (64%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   549 EQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 608

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   609 AMALQSIRN-IRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 667

Query:   122 EWP 124
             +WP
Sbjct:   668 DWP 670

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1MGL2 AGAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 61/123 (49%), Positives = 79/123 (64%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   499 EQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 558

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   559 AMALQSIRN-IRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 617

Query:   122 EWP 124
             +WP
Sbjct:   618 DWP 620

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q9UPQ3 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
 Identities = 61/123 (49%), Positives = 79/123 (64%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   549 EQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 608

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   609 AMALQSIRN-MRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 667

Query:   122 EWP 124
             +WP
Sbjct:   668 DWP 670

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NWZ1 AGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 302 (111.4 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
 Identities = 61/123 (49%), Positives = 79/123 (64%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   552 EQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQNE 611

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   612 AMALQSIRN-IRGNSHCVDCEAQNPDWASLNLGALICIECSGIHRNLGTHLSRVRSLDLD 670

Query:   122 EWP 124
             +WP
Sbjct:   671 DWP 673

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|E7EUN2 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 61/123 (49%), Positives = 79/123 (64%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++FE +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   761 EQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 820

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   821 AMALQSIRN-MRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 879

Query:   122 EWP 124
             +WP
Sbjct:   880 DWP 882

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1M838 Agap1 "Protein Agap1" [Rattus norvegicus (taxid:10116)]

 Score = 294 (108.6 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 60/123 (48%), Positives = 78/123 (63%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++ E +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   442 EQEENLEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 501

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   502 AMALQSIRN-MRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 560

Query:   122 EWP 124
             +WP
Sbjct:   561 DWP 563

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1LRF1 Agap1 "Protein Agap1" [Rattus norvegicus (taxid:10116)]

 Score = 294 (108.6 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
 Identities = 60/123 (48%), Positives = 78/123 (63%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++ E +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   495 EQEENLEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 554

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   555 AMALQSIRN-MRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 613

Query:   122 EWP 124
             +WP
Sbjct:   614 DWP 616

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

MGI|MGI:2653690 Agap1 "ArfGAP with GTPase domain, ankyrin repeat and PH domain 1" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 60/123 (48%), Positives = 78/123 (63%)

Query:    18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA-------------- 63
             +  ++ E +IVSL  + W FEA   EERD W+ AI+ QIL+SLQ+               
Sbjct:   549 EQEENLEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSE 608

Query:    64 --SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
               +LQSIR+ + GN  C DC    P WASLNLG L+CI+C G+HR LG H+SRVRSL+LD
Sbjct:   609 AMALQSIRN-MRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD 667

Query:   122 EWP 124
             +WP
Sbjct:   668 DWP 670

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISA

GO:0006184 "GTP catabolic process" evidence=ISA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CGU4	AGAP2_RAT	No assigned EC number	0.5166	0.6242	0.0868	yes	N/A
Q3UHD9	AGAP2_MOUSE	No assigned EC number	0.5166	0.6242	0.0868	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	3e-28
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	2e-24
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-23
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	6e-21
cd01250	114	cd01250, PH_AGAP, Arf-GAP with GTPase, ANK repeat	3e-18
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	2e-13
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-04
pfam00169	101	pfam00169, PH, PH domain	5e-04
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	0.001
smart00233	102	smart00233, PH, Pleckstrin homology domain	0.002
PLN03131	705	PLN03131, PLN03131, hypothetical protein; Provisio	0.004

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score =  100 bits (252), Expect = 3e-28
 Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           L+ +R ++PGN  CADC    PTWASLNLG+ +CI+C GVHR LG H+S+VRSL LD+W 
Sbjct: 4   LRELR-KLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWT 62

Query: 125 ES 126
             
Sbjct: 63  PE 64

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score = 91.2 bits (227), Expect = 2e-24
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           L+ +RS +PGN  C DC    PTWAS+NLG+ LCI+C G+HR LG H+S+VRSL LD W 
Sbjct: 1   LKLLRS-IPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWT 59

Query: 125 E 125
           E
Sbjct: 60  E 60

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 89.9 bits (223), Expect = 2e-23
 Identities = 33/45 (73%), Positives = 40/45 (88%)

Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           D    SNPR+ID+ARAR+L +D+KRCSYYETCATYGLNV+RVFQ+
Sbjct: 109 DAISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score = 86.8 bits (215), Expect = 6e-21
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           L+ ++     N  CADC    PTWAS+NLG+ LCI C GVHR LG H+S+V+SL LD W 
Sbjct: 11  LKLLK-SDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWT 69

Query: 125 ESN 127
           E  
Sbjct: 70  EEE 72

Length = 319

>gnl|CDD|241281 cd01250, PH_AGAP, Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain

 Score = 75.0 bits (185), Expect = 3e-18
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 22  SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61
           +FE +IVSLD KQW FEAA+SEERD+W+ AI+QQIL+SLQ
Sbjct: 75  AFEFIIVSLDGKQWHFEAASSEERDEWVQAIEQQILASLQ 114

AGAP (also called centaurin gamma; PIKE/Phosphatidylinositol-3-kinase enhancer) reside mainly in the nucleus and are known to activate phosphoinositide 3-kinase, a key regulator of cell proliferation, motility and vesicular trafficking. There are 3 isoforms of AGAP (PIKE-A, PIKE-L, and PIKE-S) the longest of which PIKE-L consists of N-terminal proline rich domains (PRDs), followed by a GTPase domain, a split PH domain (PHN and PHC), an ArfGAP domain and two ankyrin repeats. PIKE-S terminates after the PHN domain and PIKE-A is missing the PRD region. Centaurin binds phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score = 66.4 bits (161), Expect = 2e-13
 Identities = 27/49 (55%), Positives = 30/49 (61%)

Query: 75  NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 123
           N  C DC    PTWAS+  G+ LCI C  VHR LG H+S VRS  LD W
Sbjct: 22  NKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70

Length = 395

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 1   MSHYRNAAEIPIILVGTQDSDS 22
           +S YRN +EIP+ILVGTQD+ S
Sbjct: 91  LSSYRNISEIPLILVGTQDAIS 112

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 21  DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
                 I + D + +  +A + EER +W+ AI+  I
Sbjct: 65  RKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 127 NPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           + R +       L+       +YET A    NVD VF D
Sbjct: 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 27  IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
           I + D K    +A + EER+ W+ A+++ I
Sbjct: 72  IKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 71  RVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 123
           ++P N  C +C   GP +   N    +C+ C G+HR       RV+S+ + ++
Sbjct: 19  KLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHR---EFTHRVKSVSMSKF 68

Length = 705

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG0703|consensus	287		100.0
KOG0705|consensus	749		100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	100.0
KOG0521|consensus	785		100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	100.0
KOG0706|consensus	454		99.97
KOG0704|consensus	386		99.97
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	99.97
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	99.95
PLN03131	705	hypothetical protein; Provisional	99.94
KOG1117|consensus	1186		99.93
KOG0818|consensus	669		99.76
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	98.94
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	98.87
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	98.83
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	98.82
KOG0702|consensus	524		98.81
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	98.81
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	98.76
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	98.71
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.71
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	98.67
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	98.62
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	98.61
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	98.52
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	98.52
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	98.44
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	98.44
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	98.36
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	98.35
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	98.33
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	98.31
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	98.31
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	98.2
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	98.17
PF15409	89	PH_8: Pleckstrin homology domain	98.14
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	98.08
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	97.98
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	97.86
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	97.82
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	97.72
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	97.71
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	97.68
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.65
KOG1451|consensus	812		97.62
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	97.61
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	97.57
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	97.52
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.3
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	97.12
KOG4424|consensus	623		97.05
PTZ00283	496	serine/threonine protein kinase; Provisional	96.74
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	96.7
KOG0930|consensus	395		96.33
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	96.28
PTZ00267	478	NIMA-related protein kinase; Provisional	96.17
KOG0932|consensus	774		95.94
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	95.83
KOG0521|consensus	785		95.72
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	95.64
PF15406	112	PH_6: Pleckstrin homology domain	95.63
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	95.51
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	95.39
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	94.64
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	94.61
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	94.52
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	94.46
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	94.32
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	94.19
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	94.02
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	93.48
KOG0690|consensus	516		93.21
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	93.15
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	92.19
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	92.05
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	91.93
KOG2059|consensus	800		91.47
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	90.14
KOG3551|consensus	506		89.88
PF15404	185	PH_4: Pleckstrin homology domain	86.72
PRK12495	226	hypothetical protein; Provisional	83.37
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	81.62
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	81.41
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	81.25
PF01286	34	XPA_N: XPA protein N-terminal; InterPro: IPR022652	80.8
KOG3549|consensus	505		80.42

>KOG0703|consensus

Probab=100.00  E-value=1.7e-36  Score=250.62  Aligned_cols=95  Identities=34%  Similarity=0.736  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +..|+.|++ .|+|+.|||||++.|.|||+|+|||||+.|+||||+||+|||+|||++||.|++++|+.| ...||.+||
T Consensus        13 ~~~l~~Ll~-~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m-~~~GN~~an   90 (287)
T KOG0703|consen   13 KRRLRELLR-EPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFM-ISMGNAKAN   90 (287)
T ss_pred             HHHHHHHHc-CcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHH-HHHcchhhh
Confidence            567889998 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCCCCCCCC
Q psy17773        142 DLKRCSYYETCATYGLN  158 (165)
Q Consensus       142 ~~~e~~~~~~~~~~~~~  158 (165)
                      .+||+.+|+.+.+|...
T Consensus        91 ~~~ea~~p~~~~~p~~d  107 (287)
T KOG0703|consen   91 SYYEAKLPDPFRRPGPD  107 (287)
T ss_pred             hhccccCCccccCCChH
Confidence            99999999999877644

>KOG0705|consensus

Probab=100.00  E-value=1.1e-35  Score=262.03  Aligned_cols=139  Identities=45%  Similarity=0.796  Sum_probs=128.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH----------------HHHHHHHHhhCCCCCCCCCCC
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ----------------TASLQSIRSRVPGNLTCADCA   82 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~----------------~~~l~~l~~~~~~N~~CaDCg   82 (165)
                      ++..|||+||+....+|+|.|.+-|||+.||+||+.+|..+|+                +.+++.+++ .+||..|+||+
T Consensus       442 dEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk~Ks~~~sqsea~a~qairn-~rgn~~c~dc~  520 (749)
T KOG0705|consen  442 DEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSRLTSQSEAMALQAIRN-MRGNSHCVDCG  520 (749)
T ss_pred             ccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhcchhccchhhhHHHHHHHhc-CcCCceeeecC
Confidence            5667999999867999999999999999999999999999976                467899999 99999999999


Q ss_pred             CCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHHhhhcCCCCCCCCCCCCC
Q psy17773         83 EAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVD  160 (165)
Q Consensus        83 ~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~  160 (165)
                      .++|.|+|+|+|+++|++|+||||.||+|+|+|+||.||.|..+.+.+| ..+||+.||.+||. ...+..||.....
T Consensus       521 ~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm-~aiGN~~AN~vWE~-~~~G~~KPs~~s~  596 (749)
T KOG0705|consen  521 TPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVM-SAIGNDLANSVWEG-SSQGQTKPSPDSS  596 (749)
T ss_pred             CCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHH-HHhhhhHHHHHhhh-hccCCcCCCcccc
Confidence            9999999999999999999999999999999999999999999999999 99999999999999 5566666655543

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=100.00  E-value=1.2e-35  Score=218.43  Aligned_cols=84  Identities=38%  Similarity=0.853  Sum_probs=71.6

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHH
Q psy17773         63 ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASD  142 (165)
Q Consensus        63 ~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~  142 (165)
                      ++|+.|++ .|+|+.|||||+++|+|+|++||+|+|+.|+|+||.||+|+|+||||+||+|++++|+.| +.+||..+|+
T Consensus         2 ~~l~~l~~-~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~-~~~GN~~~n~   79 (116)
T PF01412_consen    2 KILRELLK-KPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRM-REGGNKRANS   79 (116)
T ss_dssp             HHHHHHHC-STTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHH-HHSHHHHHHH
T ss_pred             HHHHHHHc-CcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHH-HHHChHHHHH
Confidence            46889999 999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HhhhcC
Q psy17773        143 LKRCSY  148 (165)
Q Consensus       143 ~~e~~~  148 (165)
                      +||++.
T Consensus        80 ~~e~~~   85 (116)
T PF01412_consen   80 IWEANS   85 (116)
T ss_dssp             HHTTTS
T ss_pred             HHHcCC
Confidence            999993

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>KOG0521|consensus

Probab=100.00  E-value=2.1e-34  Score=266.17  Aligned_cols=141  Identities=35%  Similarity=0.684  Sum_probs=127.7

Q ss_pred             cccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH----------------------
Q psy17773          9 EIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ----------------------   61 (165)
Q Consensus         9 ~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~----------------------   61 (165)
                      .+++..+.++     .+++|||+|+| |.|+|+|||+++.+++.||.+|++.|...++                      
T Consensus       317 ~~dL~~csvk~~~~~~drr~CF~iiS-~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~~~~~~~~~~~~~~~  395 (785)
T KOG0521|consen  317 IEDLRTCSVKPDAEQRDRRFCFEIIS-PTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDSTGGRNTQSGHSSSA  395 (785)
T ss_pred             cccchhccccCCcccccceeeEEEec-CCcceEEecCchhHHHHHHHHHHHHHHHHHhccCcccccccCCCccccccccc
Confidence            3455566664     47899999999 9999999999999999999999999988765                      


Q ss_pred             ------------------HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCC
Q psy17773         62 ------------------TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW  123 (165)
Q Consensus        62 ------------------~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w  123 (165)
                                        ...+..++. .|||..|+|||+++|+|+|+|+||.+||+|+|+||+||+|+|+|+||+||.|
T Consensus       396 s~~~~~s~~~s~~~~~~~~~~~~~vq~-~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~  474 (785)
T KOG0521|consen  396 SYSTITSANTSRERLNKGISVIEEVQS-VPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVW  474 (785)
T ss_pred             cccccccccccccccccCcchhhhhhc-CCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhcc
Confidence                              012566777 9999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHhhHHHHHHHhhhcCCCCC
Q psy17773        124 PESNPRIIDEARARRLASDLKRCSYYETC  152 (165)
Q Consensus       124 ~~~~v~~~~~~~GN~~~n~~~e~~~~~~~  152 (165)
                      .++.+.+| +.+||..+|.+||+.+++..
T Consensus       475 ~~~l~~l~-~~lgn~~~N~i~e~~l~~~~  502 (785)
T KOG0521|consen  475 EPELLLLF-KNLGNKYVNEIYEALLPSYD  502 (785)
T ss_pred             CcHHHHHH-HHhCcchhhhhhhccccccc
Confidence            99999999 99999999999999999763

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=1.5e-34  Score=211.54  Aligned_cols=84  Identities=42%  Similarity=0.834  Sum_probs=80.0

Q ss_pred             CCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHHhhhcCCCCC
Q psy17773         73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETC  152 (165)
Q Consensus        73 ~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~~e~~~~~~~  152 (165)
                      |+|+.|||||+++|+|+|+|||+|+|+.|+|+||.||+|||+||||+||+|++++|+.| +.+||..+|++||+++++..
T Consensus         1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~-~~~GN~~~n~~~e~~~~~~~   79 (112)
T smart00105        1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLL-QKGGNENANSIWESNLDDFS   79 (112)
T ss_pred             CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHH-HHhhhHHHHHHHHhhCCccc
Confidence            68999999999999999999999999999999999999999999999999999999999 99999999999999999876


Q ss_pred             CCCCC
Q psy17773        153 ATYGL  157 (165)
Q Consensus       153 ~~~~~  157 (165)
                      .+++.
T Consensus        80 ~~~~~   84 (112)
T smart00105       80 LKPPD   84 (112)
T ss_pred             cCCCC
Confidence            55543

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.6e-33  Score=237.58  Aligned_cols=86  Identities=43%  Similarity=0.831  Sum_probs=81.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHH
Q psy17773         64 SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDL  143 (165)
Q Consensus        64 ~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~  143 (165)
                      .+..|+. .++|+.|||||+++|+|+|+|||||||++||||||.||+|||+||||+||+|++++|+.| +.+||.+||.|
T Consensus        10 ~l~~l~~-~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m-~~gGN~~a~~~   87 (319)
T COG5347          10 LLKLLKS-DSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRM-EVGGNSNANRF   87 (319)
T ss_pred             HHHHHhh-ccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHH-HHhcchhhhhH
Confidence            4555666 999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hhhcCCCC
Q psy17773        144 KRCSYYET  151 (165)
Q Consensus       144 ~e~~~~~~  151 (165)
                      |+.++-..
T Consensus        88 ~e~~~~~~   95 (319)
T COG5347          88 YEKNLLDQ   95 (319)
T ss_pred             hccCCCcc
Confidence            99988763

>KOG0706|consensus

Probab=99.97  E-value=1.1e-31  Score=231.14  Aligned_cols=102  Identities=32%  Similarity=0.614  Sum_probs=92.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +..++.|+. .+.|+.|+|||+++|+|+|++||||||++|+++||.||||||+|||..||.|+..+|+.| +.+||.+|+
T Consensus        11 ~~vfkkLRs-~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M-~~GGN~nA~   88 (454)
T KOG0706|consen   11 QTVFKKLRS-QSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRM-QVGGNANAR   88 (454)
T ss_pred             HHHHHHHhc-CCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHh-hhcCchhHH
Confidence            456889999 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcC-CCC--CCCCCCCCCccccC
Q psy17773        142 DLKRCSY-YET--CATYGLNVDRVFQD  165 (165)
Q Consensus       142 ~~~e~~~-~~~--~~~~~~~~~~~~~~  165 (165)
                      .|+..+- ...  ..+|++++.+.|++
T Consensus        89 ~FFkqhg~~t~d~~aKY~SraA~~Yr~  115 (454)
T KOG0706|consen   89 VFFKQHGCVTLDANAKYNSRAAKLYRE  115 (454)
T ss_pred             HHHHHcCCcchhhhhhhccHHHHHHHH
Confidence            9998753 333  35899888888864

>KOG0704|consensus

Probab=99.97  E-value=2.3e-31  Score=223.41  Aligned_cols=99  Identities=29%  Similarity=0.645  Sum_probs=88.0

Q ss_pred             HHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHHh
Q psy17773         65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLK  144 (165)
Q Consensus        65 l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~~  144 (165)
                      |+.++. ..+|+.|+||++++|+|||++||||||.+|+|+||.||+|||.|||||||+|.+.+|+.| +++||.++++|+
T Consensus        10 L~~lkp-~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kM-eaGGN~~~~eFL   87 (386)
T KOG0704|consen   10 LLELKP-QDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKM-EAGGNERFREFL   87 (386)
T ss_pred             HHhcCc-cccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHH-HhccchhHHHHH
Confidence            344333 449999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             hhcC--CCC---CCCCCCCCCccccC
Q psy17773        145 RCSY--YET---CATYGLNVDRVFQD  165 (165)
Q Consensus       145 e~~~--~~~---~~~~~~~~~~~~~~  165 (165)
                      +..-  .+.   ..||+.++..+|||
T Consensus        88 ~s~~~~~e~~~i~eKYns~aAa~yRd  113 (386)
T KOG0704|consen   88 SSQGIYKETWPIREKYNSRAAALYRD  113 (386)
T ss_pred             hhCccccccccHHHhhccHHHHHHHH
Confidence            8753  333   24899999999986

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=99.97  E-value=3.7e-31  Score=223.34  Aligned_cols=102  Identities=30%  Similarity=0.620  Sum_probs=93.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      .++++.|+. .|+|+.|+|||+++|+|+|+|||||||++|+|+||.||+|||+|||++||.|++++|+.| +.+||.++|
T Consensus        10 ~~vfrkL~~-kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~M-k~GGN~rA~   87 (395)
T PLN03114         10 ISVFKKLKA-KSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMM-IYGGNNRAQ   87 (395)
T ss_pred             HHHHHHHHh-CcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHH-HHhcCHHHH
Confidence            356888998 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCC----CCCCCCCCCCCccccC
Q psy17773        142 DLKRCSYY----ETCATYGLNVDRVFQD  165 (165)
Q Consensus       142 ~~~e~~~~----~~~~~~~~~~~~~~~~  165 (165)
                      .||+.+--    ....+|.+++...||+
T Consensus        88 ~fF~qhG~~~~~~~~~KY~S~aA~~Yre  115 (395)
T PLN03114         88 VFFKQYGWSDGGKTEAKYTSRAADLYKQ  115 (395)
T ss_pred             HHHHHcCCCCCCCcccccCCHHHHHHHH
Confidence            99988643    2346888888888864

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=99.95  E-value=3.3e-28  Score=214.83  Aligned_cols=90  Identities=17%  Similarity=0.476  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773         61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA  140 (165)
Q Consensus        61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~  140 (165)
                      ++++|++|++ .|+|+.|+|||+.+|.|||+|+|||||++|+||||.||   +|||||+||+|++++|++| +.+||.+|
T Consensus        10 nekILreLlk-lPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLDkWT~EEVe~M-k~gGN~~A   84 (648)
T PLN03119         10 NEKIIRGLMK-LPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMSKFTSKEVEVL-QNGGNQRA   84 (648)
T ss_pred             HHHHHHHHhh-CcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccCCCCHHHHHHH-HHhchHHH
Confidence            3567899998 99999999999999999999999999999999999998   3999999999999999999 99999999


Q ss_pred             HHHhhhcCCCCCCCC
Q psy17773        141 SDLKRCSYYETCATY  155 (165)
Q Consensus       141 n~~~e~~~~~~~~~~  155 (165)
                      |++||++|++...++
T Consensus        85 N~iyeanw~~~~~~~   99 (648)
T PLN03119         85 REIYLKNWDHQRQRL   99 (648)
T ss_pred             HHHHHhhcccccCCC
Confidence            999999998876543

>PLN03131 hypothetical protein; Provisional

Probab=99.94  E-value=7.7e-28  Score=214.03  Aligned_cols=88  Identities=18%  Similarity=0.493  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +++|++|++ .|+|+.|+|||+++|.|||+|||||||++|+||||.||   ++||||+||.|++++|+.| +.+||.+||
T Consensus        11 ekiLreLlk-~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD~WtdeEV~~M-k~gGN~~AN   85 (705)
T PLN03131         11 EKIIRGLMK-LPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMSKFTSQDVEAL-QNGGNQRAR   85 (705)
T ss_pred             HHHHHHHhh-CcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCCCCCHHHHHHH-HHhccHHHH
Confidence            567899998 99999999999999999999999999999999999998   3999999999999999999 999999999


Q ss_pred             HHhhhcCCCCCCC
Q psy17773        142 DLKRCSYYETCAT  154 (165)
Q Consensus       142 ~~~e~~~~~~~~~  154 (165)
                      ++||++|++...+
T Consensus        86 ~iyeanwd~~r~~   98 (705)
T PLN03131         86 EIYLKDWDQQRQR   98 (705)
T ss_pred             HHHHhhcccccCC
Confidence            9999999876544

>KOG1117|consensus

Probab=99.93  E-value=1.2e-26  Score=211.51  Aligned_cols=137  Identities=27%  Similarity=0.457  Sum_probs=125.1

Q ss_pred             cccccCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH-HHHHHHHHhhCCCCCCCCCCCCCCCCeeeec
Q psy17773         14 LVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ-TASLQSIRSRVPGNLTCADCAEAGPTWASLN   92 (165)
Q Consensus        14 ~~~~~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~-~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n   92 (165)
                      .++++.-++-.|.++| |.|.|.|.|+++.+++.|+.|+|.+|...+. .+...++.. ...|+.|||||++.|.|+|+|
T Consensus       238 ~~nvk~vdr~sfdl~T-p~r~fsftaese~erq~w~ea~q~siAeTlSd~evaeriW~-ne~nr~cadC~ssrPdwasiN  315 (1186)
T KOG1117|consen  238 VSNVKEVDRRSFDLNT-PYREFSFTAESETERQIWGEAPQPSIAETLSDYEVAERIWL-NEENRECADCGSSRPDWASIN  315 (1186)
T ss_pred             cccccccccceeccCC-ceeeeeeeeccchhhhhhhhccCcccccccChHHHHHHHHh-ccccccccccCCCCCcccccc
Confidence            3344444557899999 9999999999999999999999999998887 456677777 899999999999999999999


Q ss_pred             ccceeeeccccccccCCCccceeeeccCC--CCCCchHHHHHHHhhHHHHHHHhhhcCCCCCC
Q psy17773         93 LGLLLCIQCCGVHRCLGAHVSRVRSLELD--EWPESNPRIIDEARARRLASDLKRCSYYETCA  153 (165)
Q Consensus        93 ~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld--~w~~~~v~~~~~~~GN~~~n~~~e~~~~~~~~  153 (165)
                      +++.||-.|+|-||+||..+|+|+|++||  .|+.+.+++| ..+||.++|.||..+++++..
T Consensus       316 L~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElf-ivlgn~~an~Fwa~nl~~~e~  377 (1186)
T KOG1117|consen  316 LCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELF-IVLGNPRANRFWAGNLPPNEH  377 (1186)
T ss_pred             cceEEcccCCCccccCCCccccccccccCcccccchhhhhh-eeecCcccccccccCCCCccc
Confidence            99999999999999999999999999999  4999999999 999999999999999998764

>KOG0818|consensus

Probab=99.76  E-value=1.2e-19  Score=158.91  Aligned_cols=81  Identities=36%  Similarity=0.749  Sum_probs=76.8

Q ss_pred             CCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHHhhhcCCCC
Q psy17773         72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYET  151 (165)
Q Consensus        72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~~e~~~~~~  151 (165)
                      ....++|+|||+++|.|+|+|-|+|+|.+|+.+||.||.|||.||+|.-..|.++.|++. ..+.|..+|.|||..|-++
T Consensus         5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V-~tLn~~gaNsIWEh~Lld~   83 (669)
T KOG0818|consen    5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMV-ETLNNNGANSIWEHSLLDP   83 (669)
T ss_pred             chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHH-HHHHhcCcchhhhhhccCc
Confidence            456789999999999999999999999999999999999999999999999999999988 9999999999999999887


Q ss_pred             CC
Q psy17773        152 CA  153 (165)
Q Consensus       152 ~~  153 (165)
                      ..
T Consensus        84 st   85 (669)
T KOG0818|consen   84 AT   85 (669)
T ss_pred             hh
Confidence            64

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=98.94  E-value=1.2e-09  Score=78.56  Aligned_cols=34  Identities=24%  Similarity=0.640  Sum_probs=31.9

Q ss_pred             ceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        23 ~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ++|.|+| |+|+|+|+|+|++||++||+||+.++.
T Consensus        68 ~~F~i~t-~~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          68 YGVTLVT-PERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             ceEEEEe-CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            5999999 899999999999999999999998764

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=98.87  E-value=2.6e-09  Score=75.62  Aligned_cols=54  Identities=15%  Similarity=0.302  Sum_probs=40.5

Q ss_pred             CCCCCCCccc------cccccccc---CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAEI------PIILVGTQ---DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         1 ~s~y~~~~~i------~~~~~~~~---~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      |.||+.+.+.      ++..+...   .++++.|.|+| ++|+|+|+|+|++||+.||++|+.+
T Consensus        31 L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~~~~~F~i~t-~~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          31 LYYYKDSQDAKPLGRVDLSGAAFTYDPREEKGRFEIHS-NNEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             EEEECCCCcccccceEECCccEEEcCCCCCCCEEEEEc-CCcEEEEECCCHHHHHHHHHHHHhh
Confidence            4678776532      33322221   33478999999 8999999999999999999999864

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=98.83  E-value=5.4e-09  Score=75.22  Aligned_cols=33  Identities=12%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      +|+|+|+| |+|||+|+|+|++|+++||++|+.+
T Consensus        68 ~~~Fei~t-p~rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          68 PKAFEIFT-ADKTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             CcEEEEEc-CCceEEEEeCCHHHHHHHHHHHHhh
Confidence            59999999 8999999999999999999999865

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=98.82  E-value=4.7e-09  Score=75.72  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      +.++|+|+| ++|+|+++|+|++||++||++|++
T Consensus        73 ~~~~F~i~t-~~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          73 FKYPFQVVH-DEGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             cCccEEEEe-CCCeEEEEcCCHHHHHHHHHHHHh
Confidence            579999999 899999999999999999999975

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>KOG0702|consensus

Probab=98.81  E-value=5.8e-09  Score=91.94  Aligned_cols=85  Identities=15%  Similarity=0.432  Sum_probs=76.3

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCCCC-CeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         63 ASLQSIRSRVPGNLTCADCAEAGP-TWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        63 ~~l~~l~~~~~~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      .+++.|++ +|+|++|++|.+..+ +|+...-|-|+|..|+|.-|.|.. -.+|||+.|-.++..++..+ +..||....
T Consensus        14 k~iR~l~k-LP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmttft~qevs~l-QshgNq~~k   90 (524)
T KOG0702|consen   14 KEIRRLLK-LPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMTTFTDQEVSFL-QSHGNQVCK   90 (524)
T ss_pred             HHHHHHhc-CCCCCceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeeeeccccchHHH-hhcchhhhh
Confidence            45677888 999999999999877 999999999999999999998733 56999999999999999999 999999999


Q ss_pred             HHhhhcCCC
Q psy17773        142 DLKRCSYYE  150 (165)
Q Consensus       142 ~~~e~~~~~  150 (165)
                      ++|..-.+.
T Consensus        91 ~i~fkl~D~   99 (524)
T KOG0702|consen   91 EIWFKLFDF   99 (524)
T ss_pred             hhhhcchhh
Confidence            999875544

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=98.81  E-value=5.7e-09  Score=74.68  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .++|+|+| |+|+|++||+|++|+++||+||++
T Consensus        66 ~~~fqivt-~~r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          66 VDIITIVC-EDDTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             CceEEEEe-CCCeEEEECCCHHHHHHHHHHHhc
Confidence            47999999 899999999999999999999975

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=98.76  E-value=1e-08  Score=72.15  Aligned_cols=54  Identities=26%  Similarity=0.364  Sum_probs=40.6

Q ss_pred             CCCCCCCcc--------ccccccccc--CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE--------IPIILVGTQ--DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus         1 ~s~y~~~~~--------i~~~~~~~~--~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      |+||+++.+        |++..+.+.  +.+++.|+|+++++|+|+|.|+|++|++.||+||+.
T Consensus        27 L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          27 LSYYKSEAEKSHGCRGSIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             EEEEecCccCcCCCcEEEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence            578887554        333433332  445689999874569999999999999999999985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=98.71  E-value=1.3e-08  Score=71.47  Aligned_cols=45  Identities=11%  Similarity=0.256  Sum_probs=35.9

Q ss_pred             ccccccccc----CCCcceEEEEeCCC-CeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         10 IPIILVGTQ----DSDSFELLIVSLDN-KQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        10 i~~~~~~~~----~~~~~~F~ivt~~~-rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      |++..+.+.    ..++++|.|++ |+ |+|+|+|+|++|+++||.+|+.|
T Consensus        47 I~L~~~~v~~~~~~~k~~~F~I~~-~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          47 IFLSGFTIESAKEVKKKYAFKVCH-PVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             EEccCCEEEEchhcCCceEEEECC-CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            455544332    55689999998 65 99999999999999999999764

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.71  E-value=1.7e-08  Score=72.86  Aligned_cols=44  Identities=16%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             cccccccccc----CCCcceEEEEeCCCC--eEEEEeCCHHHHHHHHHHHH
Q psy17773          9 EIPIILVGTQ----DSDSFELLIVSLDNK--QWQFEAANSEERDDWIAAIQ   53 (165)
Q Consensus         9 ~i~~~~~~~~----~~~~~~F~ivt~~~r--t~~fqa~se~E~~~Wi~ai~   53 (165)
                      .|.+.+++++    .+|+|||+|++ +.+  ++.|||+|+.|+..||+|++
T Consensus        53 ~~~l~sc~~r~~~~~dRRFCFei~~-~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          53 TLTLKSCSRRKTESIDKRFCFDVEV-EEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             EEeeeeccccccCCccceeeEeeee-cCCCCeEEEEecCHHHHHHHHHhhc
Confidence            3556666664    78999999998 666  89999999999999999986

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=98.67  E-value=3.6e-08  Score=70.23  Aligned_cols=35  Identities=17%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ++++|.|+| ++|+|+|+|+|++|+++||++|+..+
T Consensus        64 ~~~~F~I~t-~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          64 GPNTFAVCT-KHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             CCcEEEEEC-CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            579999998 89999999999999999999998654

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=98.62  E-value=3.8e-08  Score=67.79  Aligned_cols=33  Identities=48%  Similarity=0.937  Sum_probs=30.9

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ++++|.|++ ++++|+|+|+|++|+++||.||++
T Consensus        61 ~~~~f~i~~-~~~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          61 RRFCFEVIS-PTKTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             CceEEEEEc-CCcEEEEECCCHHHHHHHHHHHhc
Confidence            689999999 779999999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=98.61  E-value=4.5e-08  Score=70.06  Aligned_cols=54  Identities=17%  Similarity=0.312  Sum_probs=44.7

Q ss_pred             CCCCCccccccccccc---C--CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773          3 HYRNAAEIPIILVGTQ---D--SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus         3 ~y~~~~~i~~~~~~~~---~--~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .|++...||+....+.   +  +.+++|+|.+ +.++|.++|.|++|+++||++|+++|.
T Consensus        40 ~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~-~~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          40 SFRILGHLPLRGMLTEESEHEWGVPHCFTIFG-GQCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             eEEEEEEEEcCceEEeeccCCcCCceeEEEEc-CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence            4566667777766664   2  3469999998 899999999999999999999999885

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=98.52  E-value=1.1e-07  Score=67.88  Aligned_cols=53  Identities=19%  Similarity=0.337  Sum_probs=40.2

Q ss_pred             CCCCccccccccccc----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773          4 YRNAAEIPIILVGTQ----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus         4 y~~~~~i~~~~~~~~----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      |+....|++....+.    .+.+++|.|.+ ++|+|+++|+|++|+++||++|+.+|.
T Consensus        44 y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~-~~rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          44 FKVRARIDVSGMQVCEGDNLERPHSFLVSG-KQRCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             EEEEEEEecccEEEEeCCCCCcCceEEEec-CCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            333344555443332    23579999998 789999999999999999999998875

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=98.52  E-value=1.2e-07  Score=68.17  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ++|.|+|+| |+|+|+|+|+||+|+++||.+|..
T Consensus        68 ~~~~f~i~t-~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          68 HRHLIALYT-RDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             cCeEEEEEe-CCceEEEEeCCHHHHHHHHHHHhh
Confidence            359999999 889999999999999999999953

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=98.44  E-value=2.6e-07  Score=63.23  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=31.9

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..++++|.|.++.+++|+|+|+|++|+..||.+|+.+
T Consensus        55 ~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          55 DSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            4447999999844599999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=98.44  E-value=3.8e-07  Score=65.94  Aligned_cols=56  Identities=21%  Similarity=0.380  Sum_probs=44.9

Q ss_pred             CCCCccccccccccc---C--CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773          4 YRNAAEIPIILVGTQ---D--SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus         4 y~~~~~i~~~~~~~~---~--~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      |+....+|+....+.   +  +-++.|.|.+ +.|+|.++|+|++|+.+||++|+++|...+
T Consensus        42 ~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~-~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l  102 (104)
T cd01218          42 YNKQHILPLEGVQVESIEDDGIERNGWIIKT-PTKSFAVYAATETEKREWMLHINKCVTDLL  102 (104)
T ss_pred             eeEeeEEEccceEEEecCCcccccceEEEec-CCeEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence            556666677655442   2  2368999999 899999999999999999999999998754

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=98.36  E-value=7e-07  Score=64.53  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      +.++|.|+| |+|+|+|.|+|++|+++||.+|..
T Consensus        70 ~~~~f~I~t-p~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          70 QKFSICILT-PDKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             CccEEEEEC-CCceEEEEeCCHHHHHHHHHHHHh
Confidence            358999999 899999999999999999999964

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=98.35  E-value=6.8e-07  Score=63.55  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=31.4

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .+++.|.|.++++++|+|||+|++|+..||.+|+.
T Consensus        69 k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          69 KKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             cCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence            55699999886689999999999999999999974

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=98.33  E-value=8.4e-07  Score=65.41  Aligned_cols=58  Identities=28%  Similarity=0.460  Sum_probs=41.8

Q ss_pred             CCCCCCCc------cccccccccc----CCCcceEEEEeCCC--------------------CeEEEEeCCHHHHHHHHH
Q psy17773          1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLDN--------------------KQWQFEAANSEERDDWIA   50 (165)
Q Consensus         1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~~--------------------rt~~fqa~se~E~~~Wi~   50 (165)
                      |.||+...      .|++..+.+.    ..+++||+|.++.+                    ++|+|+|+|++|+++||+
T Consensus        28 L~yyk~~~~~~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~  107 (125)
T cd01252          28 LYYFEYTTDKEPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIK  107 (125)
T ss_pred             EEEEcCCCCCCceEEEECCCcEEEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHH
Confidence            45666543      2455533332    34679999987443                    689999999999999999


Q ss_pred             HHHHHHHH
Q psy17773         51 AIQQQILS   58 (165)
Q Consensus        51 ai~~~i~~   58 (165)
                      +|+.++..
T Consensus       108 al~~~~~~  115 (125)
T cd01252         108 SIKASISP  115 (125)
T ss_pred             HHHHHHhc
Confidence            99987754

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=98.31  E-value=7e-07  Score=63.91  Aligned_cols=52  Identities=21%  Similarity=0.174  Sum_probs=37.0

Q ss_pred             CCCCCCCcc------ccccccccc------CCCcceEEEEeCCCC--eEEEEeCCHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE------IPIILVGTQ------DSDSFELLIVSLDNK--QWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~~~------~~~~~~F~ivt~~~r--t~~fqa~se~E~~~Wi~ai~~   54 (165)
                      |+||+.+..      |++..+.+.      .+++|||+|++ +++  +|++-|++ +|+++||++|+.
T Consensus        32 l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~-~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          32 ESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVE-RALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             EEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEec-CCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            456655543      344445443      26679999998 655  78777777 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=98.31  E-value=1.1e-06  Score=61.71  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      +.+.|+|.| +.|+|+|.|+|++|+.+||.+|++.|
T Consensus        67 ~~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          67 RKGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             CceEEEEEe-CCceEEEECCCHHHHHHHHHHHHhhC
Confidence            457899888 89999999999999999999998754

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=98.20  E-value=2.6e-06  Score=61.39  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=29.3

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .|.|.|+| +.|+|+|.|+|++||++||.+|.+
T Consensus        75 ~~~f~i~t-~~r~y~l~A~s~ee~~~Wi~~I~~  106 (108)
T cd01266          75 GYGFDIET-IVRDLYLVAKNEEEMTLWVNCICK  106 (108)
T ss_pred             ceEEEEEe-CCccEEEEECCHHHHHHHHHHHHh
Confidence            36799998 899999999999999999999964

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=98.17  E-value=2.3e-06  Score=61.97  Aligned_cols=54  Identities=20%  Similarity=0.440  Sum_probs=41.3

Q ss_pred             CCCCCCCcc---ccc---cccccc-------CCCcceEEEEeCCC----CeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE---IPI---ILVGTQ-------DSDSFELLIVSLDN----KQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         1 ~s~y~~~~~---i~~---~~~~~~-------~~~~~~F~ivt~~~----rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      |+||++.++   .|+   ++.+..       ..++|+|.+++ |.    |+|+|.|+||+++..||+|.+.|
T Consensus        32 L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~-ps~~~~r~y~l~cdsEeqya~Wmaa~rla  102 (106)
T cd01237          32 ISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLI-PTAEGMNEVWLRCDNEKQYAKWMAACRLA  102 (106)
T ss_pred             EEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEec-CCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence            578888776   233   333332       25579999998 66    99999999999999999999754

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=98.14  E-value=3.1e-06  Score=59.57  Aligned_cols=54  Identities=26%  Similarity=0.459  Sum_probs=43.7

Q ss_pred             CCCCCCCccc------cccccccc-CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAEI------PIILVGTQ-DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         1 ~s~y~~~~~i------~~~~~~~~-~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ||||+++.+.      |+.++.+. ..+..+|.|.| ...+|++.|.|++|.+.|+.||+.+
T Consensus        28 LsYy~~~~~~~~rGsi~v~~a~is~~~~~~~I~ids-g~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   28 LSYYRNQNSGKLRGSIDVSLAVISANKKSRRIDIDS-GDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             EEEEecCCCCeeEeEEEccceEEEecCCCCEEEEEc-CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence            6899987753      55555554 44567899988 7889999999999999999999864

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=98.08  E-value=1e-05  Score=55.22  Aligned_cols=37  Identities=35%  Similarity=0.540  Sum_probs=32.4

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      +..++|.|.++.+++|+|+|+|++|+..|+.+|+.++
T Consensus        67 ~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   67 KRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4679999999444599999999999999999999875

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=97.98  E-value=1.8e-05  Score=58.39  Aligned_cols=39  Identities=15%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..+++.|.|.++.++.|.|||.+++||+.||.+|+.+..
T Consensus        74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~  112 (117)
T cd01230          74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAA  112 (117)
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            677899999996679999999999999999999987553

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=97.86  E-value=3.4e-05  Score=56.61  Aligned_cols=36  Identities=25%  Similarity=0.496  Sum_probs=30.3

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ..|++.|.|.++.+..|.|||.+++||.+||.+|+.
T Consensus        81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~  116 (119)
T PF15410_consen   81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINY  116 (119)
T ss_dssp             TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhh
Confidence            668899999996689999999999999999999975

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=97.82  E-value=2.4e-05  Score=57.31  Aligned_cols=38  Identities=26%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      -++.|.|++.++++|.|+|.|++|+.+||++|..++.+
T Consensus        74 ~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~  111 (112)
T cd01261          74 YKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK  111 (112)
T ss_pred             cCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence            36899999855789999999999999999999887654

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=97.72  E-value=4e-05  Score=54.75  Aligned_cols=35  Identities=29%  Similarity=0.553  Sum_probs=26.7

Q ss_pred             CCCcceEEEE----e-CCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIV----S-LDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~iv----t-~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..+.+.|.|.    + +++|+  |.|+|++||++||.||+..
T Consensus        62 ~~~~~~F~i~~~~~~~~~~r~--f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          62 RPRPNTFIIRCLQWTTVIERT--FHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CCCcceEEEEeccCCcccCEE--EEeCCHHHHHHHHHHHHhh
Confidence            3456899997    2 24554  4699999999999999864

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=97.71  E-value=4.9e-05  Score=54.57  Aligned_cols=35  Identities=9%  Similarity=0.233  Sum_probs=32.2

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      -++.|.|+| +.+++.|||+|++++.+||+.|++++
T Consensus        64 ~kNafki~t-~~~s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          64 AKKVLKLLI-FPESRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             cCceEEEEe-CCccEEEEeCCHHHHHHHHHHHHHHh
Confidence            368999999 78999999999999999999999876

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=97.68  E-value=7.7e-05  Score=54.96  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..+++.|.|.| ++|+|.|.|+|+.++++||++|+.+
T Consensus        86 ~~~~~~~~i~t-~~R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          86 TGLRHGLKITN-SNRSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             CCCceEEEEEc-CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            35578999998 8999999999999999999999864

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.65  E-value=0.0001  Score=48.72  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=30.2

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ..++|.|++.+++.|+|+|+|++|+..|+.+|+.
T Consensus        62 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          62 RKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence            4799999984459999999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1451|consensus

Probab=97.62  E-value=5.1e-05  Score=68.93  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=76.1

Q ss_pred             CCCcceEEEEeCCCC--eEEEEeCCHHHHHHHHHHHHHHH-------------HHhHHHHHHHHHHhhCCCCCCCCCCCC
Q psy17773         19 DSDSFELLIVSLDNK--QWQFEAANSEERDDWIAAIQQQI-------------LSSLQTASLQSIRSRVPGNLTCADCAE   83 (165)
Q Consensus        19 ~~~~~~F~ivt~~~r--t~~fqa~se~E~~~Wi~ai~~~i-------------~~~l~~~~l~~l~~~~~~N~~CaDCg~   83 (165)
                      .+++|||.|-+ .+|  +..+||-||+++..||+|+..+-             ...|..-.+..+++       |.|   
T Consensus       329 IdKRFCFDve~-~erpgviTmQALSE~drrlWmeAMDG~ep~Y~s~~~~~~~~~~qLd~iGF~fvrk-------CI~---  397 (812)
T KOG1451|consen  329 IDKRFCFDVEV-EERPGVITMQALSEKDRRLWMEAMDGAEPSYTSGENCSTYKQTQLDDIGFEFVRK-------CID---  397 (812)
T ss_pred             cccceeeeeee-cccCCeeehHhhhhhHHHHHHHHhcCCCccccCccccchhhhhhhhhhhHHHHHH-------HHH---
Confidence            78899999987 655  88999999999999999998541             00111233444555       111   


Q ss_pred             CCCCeeeecccceeeeccccccccCCCc--cceeeeccCCCCCCchHH-----HHHHHhhHHHHHHHhhhcCCCCCCCCC
Q psy17773         84 AGPTWASLNLGLLLCIQCCGVHRCLGAH--VSRVRSLELDEWPESNPR-----IIDEARARRLASDLKRCSYYETCATYG  156 (165)
Q Consensus        84 ~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~--is~VkSl~ld~w~~~~v~-----~~~~~~GN~~~n~~~e~~~~~~~~~~~  156 (165)
                               .--.-=+.=.|+.|..|++  +.+.-++.+|.-++.++.     .+ +.---..+-+.|..+||+..++|.
T Consensus       398 ---------i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eW-eiKTITSaLKtYLRnLpEPLMTY~  467 (812)
T KOG1451|consen  398 ---------ILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEW-EIKTITSALKTYLRNLPEPLMTYE  467 (812)
T ss_pred             ---------HHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhh-hhhhHHHHHHHHHHhCCchhhHHH
Confidence                     0000001123455777876  456777888876554443     23 333446788999999999999987


Q ss_pred             C
Q psy17773        157 L  157 (165)
Q Consensus       157 ~  157 (165)
                      +
T Consensus       468 L  468 (812)
T KOG1451|consen  468 L  468 (812)
T ss_pred             H
Confidence            5

>smart00233 PH Pleckstrin homology domain

Probab=97.61  E-value=0.00016  Score=48.22  Aligned_cols=36  Identities=25%  Similarity=0.589  Sum_probs=31.0

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..++|.|.+++.++|+|+|+|++|+..|+.+|+.++
T Consensus        66 ~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       66 KPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             CceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            579999998434499999999999999999998754

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=97.57  E-value=0.00015  Score=52.72  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=27.0

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ...|.|.| |.|+|+|.|++++|+..||+||+.+
T Consensus        80 ~~~~~i~T-~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   80 LKVFSIFT-PTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             SEEEEEE--SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCCcEEEC-CCcEEEEEECCHHHHHHHHHHHHhC
Confidence            35678888 8999999999999999999999864

>cd00900 PH-like Pleckstrin homology-like domain

Probab=97.52  E-value=0.00016  Score=48.11  Aligned_cols=34  Identities=35%  Similarity=0.637  Sum_probs=30.7

Q ss_pred             CcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ..++|.|++.+  .+.+.|+|++++|++.|+.+|+.
T Consensus        63 ~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          63 DPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             CCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence            57999999843  89999999999999999999975

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=97.30  E-value=0.00042  Score=49.48  Aligned_cols=39  Identities=21%  Similarity=0.469  Sum_probs=32.1

Q ss_pred             CCCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .+++.+|.|++.+  .++|.|||.|++++..||++|+.+|.
T Consensus        56 ~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i~   96 (97)
T cd01222          56 PGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAML   96 (97)
T ss_pred             CCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence            3458999997632  26999999999999999999998764

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=97.12  E-value=0.00057  Score=50.73  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=18.1

Q ss_pred             EEEEeCCHHHHHHHHHHHHH
Q psy17773         35 WQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        35 ~~fqa~se~E~~~Wi~ai~~   54 (165)
                      +.|.|+|++||++||.||++
T Consensus       102 ~~lsaDt~eer~~W~~ain~  121 (122)
T cd01263         102 VMLSADTKEERQTWLSLLNS  121 (122)
T ss_pred             EEEecCCHHHHHHHHHHHhc
Confidence            46889999999999999975

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4424|consensus

Probab=97.05  E-value=0.00075  Score=61.25  Aligned_cols=59  Identities=22%  Similarity=0.366  Sum_probs=44.2

Q ss_pred             CCCCCCccccccccccc----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773          2 SHYRNAAEIPIILVGTQ----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus         2 s~y~~~~~i~~~~~~~~----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      +-|.+.+.+.+....+.    .+....|.+ |++.|...|||.+++|..+|+++|+.+|..+-+
T Consensus       312 ~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~-~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq  374 (623)
T KOG4424|consen  312 SKYEVRARCSISHMQVQEDDNEELPHTFIL-TGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQ  374 (623)
T ss_pred             ceeccceeeccCcchhcccccccCCceEEE-ecccceEEeecCchhhHHHHHHHHHHHHHHHHH
Confidence            34556665544444443    334578865 558999999999999999999999999988765

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=96.74  E-value=0.0022  Score=57.27  Aligned_cols=40  Identities=20%  Similarity=0.373  Sum_probs=35.8

Q ss_pred             cCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         18 QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        18 ~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .++..|-|-+.+.++|.+.|||.+++||+.||.+||+++.
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        451 GSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             CCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            3667899999987899999999999999999999998753

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=96.70  E-value=0.0046  Score=45.55  Aligned_cols=37  Identities=11%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             cceEEEEeCCC-CeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDN-KQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        22 ~~~F~ivt~~~-rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ++.|.|+...+ ..|+|.|.|++++..||++|+.|++.
T Consensus        76 ~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn  113 (116)
T cd01223          76 KYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN  113 (116)
T ss_pred             EEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            57899997443 68999999999999999999988764

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0930|consensus

Probab=96.33  E-value=0.0098  Score=50.25  Aligned_cols=50  Identities=22%  Similarity=0.377  Sum_probs=39.8

Q ss_pred             cccccccccc----CCCcceEEEEeCCC---------------------CeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVGTQ----DSDSFELLIVSLDN---------------------KQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         9 ~i~~~~~~~~----~~~~~~F~ivt~~~---------------------rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      -||+...+++    ..++|||+|.+|..                     -.|.+.|.+.+|+++||.+|+.+|..
T Consensus       303 IIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~  377 (395)
T KOG0930|consen  303 IIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR  377 (395)
T ss_pred             ceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence            4577666664    56679999988444                     26999999999999999999988763

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=96.28  E-value=0.0082  Score=43.39  Aligned_cols=35  Identities=14%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .-.|.|.| |+|+|+|.. .+.+...|+++|++....
T Consensus        67 ~~~F~I~t-p~RtY~l~d-~~~~A~~W~~~I~~~~~~  101 (104)
T PF14593_consen   67 FKTFFIHT-PKRTYYLED-PEGNAQQWVEAIEEVKKQ  101 (104)
T ss_dssp             SSEEEEEE-TTEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence            45899999 899999998 667789999999987654

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=96.17  E-value=0.0089  Score=52.91  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .+.++|.|-+..++.+.|+|+|++||++||.+|+.++
T Consensus       440 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        440 KHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             CCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence            4689999987678999999999999999999999875

>KOG0932|consensus

Probab=95.94  E-value=0.01  Score=54.24  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .++.+.|.+-|-+-|.|.|||.+.+||+.||..|.-
T Consensus       580 ~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~  615 (774)
T KOG0932|consen  580 SKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINL  615 (774)
T ss_pred             ccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHH
Confidence            677899999997899999999999999999999873

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=95.83  E-value=0.0086  Score=42.59  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=25.8

Q ss_pred             EEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         25 LLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        25 F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      |.+-..++|+|.|-|.|+.|+.+||++|++
T Consensus        63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~   92 (96)
T cd01228          63 FRIHNKNGKSYTFLLSSDYERSEWRESIQK   92 (96)
T ss_pred             hhccccCCceEEEEecCHHHHHHHHHHHHH
Confidence            555444799999999999999999999975

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0521|consensus

Probab=95.72  E-value=0.0026  Score=60.29  Aligned_cols=71  Identities=17%  Similarity=0.234  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHHhh
Q psy17773         72 VPGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKR  145 (165)
Q Consensus        72 ~~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~~e  145 (165)
                      ...+..|++|++. ...|+++|+.+.+|++|+++|+.++.+.+...++.|++-.+  +... ...|+..++..+.
T Consensus       627 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~-d~~g~~plh~~~~  698 (785)
T KOG0521|consen  627 ASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNAL-DSKGRTPLHHATA  698 (785)
T ss_pred             hccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhh-hccCCCcchhhhh
Confidence            4567889999985 78999999999999999999999999999999999998776  6655 5556655555443

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=95.64  E-value=0.03  Score=41.05  Aligned_cols=38  Identities=18%  Similarity=0.438  Sum_probs=29.3

Q ss_pred             CCCcceEEEEeCC-C---CeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-N---KQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~-~---rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .++...|+|-+.. .   .+|.+||.|.++++.|+..|++.+
T Consensus        71 ~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          71 EGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             CCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            4556777775422 2   699999999999999999998643

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15406 PH_6: Pleckstrin homology domain

Probab=95.63  E-value=0.024  Score=41.33  Aligned_cols=31  Identities=32%  Similarity=0.608  Sum_probs=26.1

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQ   53 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~   53 (165)
                      ...|.+.. .+....|||.|..||+.||.+|.
T Consensus        80 ~~kF~f~~-~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   80 SNKFHFKI-KGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             CceEEEEe-CCceeeeecCCHHHhccHHHHhh
Confidence            35566555 78999999999999999999985

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=95.51  E-value=0.019  Score=40.40  Aligned_cols=45  Identities=27%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             ccccccccc--cCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVGT--QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         9 ~i~~~~~~~--~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      +||+...+.  .......|.|.| |+|+|+|. +.+...+.|+++|++.
T Consensus        41 eIp~s~~~l~v~~~~~~~F~I~T-p~rty~le-D~~~~a~~W~~~I~~~   87 (89)
T cd01262          41 EIPWSDVELRVEVKNSSHFFVHT-PNKVYSFE-DPKGRASQWKKAIEDL   87 (89)
T ss_pred             EecccccceEEEEecCccEEEEC-CCceEEEE-CCCCCHHHHHHHHHHH
Confidence            556654222  122235799999 99999995 5678999999999864

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=95.39  E-value=0.022  Score=42.50  Aligned_cols=33  Identities=15%  Similarity=0.387  Sum_probs=27.2

Q ss_pred             CcceEEEE-----eCCCCeEEEEeCCHHHHHHHHHHHH
Q psy17773         21 DSFELLIV-----SLDNKQWQFEAANSEERDDWIAAIQ   53 (165)
Q Consensus        21 ~~~~F~iv-----t~~~rt~~fqa~se~E~~~Wi~ai~   53 (165)
                      .++.|.|.     .+..+.+.|+|+|+.|++.||+|+.
T Consensus        82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            46788875     2356789999999999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=94.64  E-value=0.071  Score=38.80  Aligned_cols=35  Identities=11%  Similarity=0.188  Sum_probs=31.9

Q ss_pred             CCcceEEEEeCCC-CeEEEEeCCHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDN-KQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        20 ~~~~~F~ivt~~~-rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ++.+||.|-++.. .+++|..|+..|+..|..||+.
T Consensus        72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence            6789999999667 8999999999999999999974

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=94.61  E-value=0.091  Score=37.87  Aligned_cols=36  Identities=17%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .++.++|.+.-.++-.|.|+|.+++++..|+..|+.
T Consensus        71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence            556788998864677999999999999999999874

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=94.52  E-value=0.097  Score=38.18  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=28.5

Q ss_pred             cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ++.|.|+... ++.|.|.|.|++++..||+|+..
T Consensus        72 knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          72 KNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             EEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence            5789999733 57899999999999999999964

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=94.46  E-value=0.087  Score=38.53  Aligned_cols=39  Identities=13%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             CCCcceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .+-++=|.|.+.+ .++.++-|++++|++.|+.+|.+-|.
T Consensus        72 kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~~  111 (112)
T cd01242          72 KEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKIP  111 (112)
T ss_pred             ccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhcc
Confidence            4446778888855 68999999999999999999987653

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=94.32  E-value=0.1  Score=38.44  Aligned_cols=33  Identities=18%  Similarity=0.466  Sum_probs=30.2

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      -.++|.|+| ++|+..|.|++.++.+-|+.+|+.
T Consensus        87 ~~~si~i~t-~~R~L~l~a~s~~~~~~W~~aL~~  119 (123)
T PF12814_consen   87 HNKSIIIVT-PDRSLDLTAPSRERHEIWFNALRY  119 (123)
T ss_pred             cceEEEEEc-CCeEEEEEeCCHHHHHHHHHHHHH
Confidence            468999998 899999999999999999999975

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=94.19  E-value=0.096  Score=37.76  Aligned_cols=53  Identities=25%  Similarity=0.404  Sum_probs=37.2

Q ss_pred             CCCCCCCcc------ccccccccc------CCCcceEEEEeCCC-------CeEEEEeCCHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE------IPIILVGTQ------DSDSFELLIVSLDN-------KQWQFEAANSEERDDWIAAIQ   53 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~~~------~~~~~~F~ivt~~~-------rt~~fqa~se~E~~~Wi~ai~   53 (165)
                      |+||+...+      ||+.-..++      ..++|+|++..|.+       |+..+.|+|.+|.+.|...+=
T Consensus        31 L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasfl  102 (110)
T cd01256          31 LSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFL  102 (110)
T ss_pred             eeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHH
Confidence            456665542      355444443      56779999997443       477899999999999998763

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=94.02  E-value=0.14  Score=36.93  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             CCcceEEEEeCCC---CeEEEEeCCHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDN---KQWQFEAANSEERDDWIAAIQ   53 (165)
Q Consensus        20 ~~~~~F~ivt~~~---rt~~fqa~se~E~~~Wi~ai~   53 (165)
                      ....||.|+.+++   ++.+|-|+|+++.+.|++.|.
T Consensus        77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~  113 (115)
T cd01248          77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLR  113 (115)
T ss_pred             ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHh
Confidence            4468999998665   689999999999999999986

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=93.48  E-value=0.3  Score=36.80  Aligned_cols=40  Identities=18%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             CCCcceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++...|+|-+.. ..+|.+||.|.+.++.|+..|..-+..
T Consensus        77 ~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~  117 (133)
T cd01227          77 KGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS  117 (133)
T ss_pred             CCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            3446678776633 559999999999999999999875544

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690|consensus

Probab=93.21  E-value=0.28  Score=42.86  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=38.4

Q ss_pred             CCCcceEEEEeCCC---CeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCCCCCCCCCCC
Q psy17773         19 DSDSFELLIVSLDN---KQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGP   86 (165)
Q Consensus        19 ~~~~~~F~ivt~~~---rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l~~l~~~~~~N~~CaDCg~~~p   86 (165)
                      ..+++.|.|-...=   =...|.++|++||++|+.|||..- ..+.++.+-..-. .|....=++||++..
T Consensus        76 rPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vs-n~l~q~e~~~tn~-~p~~~~d~~~~s~s~  144 (516)
T KOG0690|consen   76 RPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVS-NRLKQEELMDTNG-NPEGEMDVNMGSPSD  144 (516)
T ss_pred             CCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHh-hhhhhhhhcccCC-CccccccccCCCCCc
Confidence            45567787653210   123577999999999999998643 3343332222222 344444556666654

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=93.15  E-value=0.23  Score=36.33  Aligned_cols=55  Identities=9%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             CCCCCCccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773          2 SHYRNAAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus         2 s~y~~~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      |.|+=+-.+|+.--.+.     .+.++.|+|..+---+..+-|.+.+|.++|+..|+..+
T Consensus        50 sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~  109 (111)
T cd01225          50 SGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN  109 (111)
T ss_pred             cceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence            34444445666544442     44469999986333567999999999999999998754

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=92.19  E-value=0.45  Score=34.76  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ++++.|.|.| ......|.|+|..+.+.|++.|+.-+.
T Consensus        68 ~~~~yfgL~T-~~G~vEfec~~~~~~k~W~~gI~~mL~  104 (110)
T PF08458_consen   68 EERRYFGLKT-AQGVVEFECDSQREYKRWVQGIQHMLS  104 (110)
T ss_pred             ceEEEEEEEe-cCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence            3568899998 688999999999999999999986443

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=92.05  E-value=0.34  Score=35.98  Aligned_cols=36  Identities=14%  Similarity=0.255  Sum_probs=28.0

Q ss_pred             CCCcceEEEEeC------CCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSL------DNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        19 ~~~~~~F~ivt~------~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .+-++=|.|.+.      +.++.+|-|+|+.|++.|+.||++
T Consensus        76 kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~  117 (122)
T cd01243          76 KDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSE  117 (122)
T ss_pred             ccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence            344566777652      247889999999999999999975

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=91.93  E-value=0.3  Score=36.69  Aligned_cols=35  Identities=17%  Similarity=0.463  Sum_probs=24.9

Q ss_pred             CcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        21 ~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..|.|.+.-..  +.+|.|.|+|+.+|+.|++.|+++
T Consensus        98 ~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   98 SLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             SEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            34778875422  346799999999999999999864

>KOG2059|consensus

Probab=91.47  E-value=0.29  Score=45.89  Aligned_cols=34  Identities=21%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      .+++|+||. ++|+.++||.+-.|..+|+++|++.
T Consensus       630 ~knv~qVV~-~drtly~Q~~n~vEandWldaL~kv  663 (800)
T KOG2059|consen  630 MKNVFQVVH-TDRTLYVQAKNCVEANDWLDALRKV  663 (800)
T ss_pred             CCceEEEEe-cCcceeEecCCchHHHHHHHHHHHH
Confidence            357999999 7799999999999999999999864

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=90.14  E-value=0.5  Score=34.80  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CCcceEEEEeCCCCeEEEEeCC--------------------HHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAAN--------------------SEERDDWIAAIQQQ   55 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~s--------------------e~E~~~Wi~ai~~~   55 (165)
                      ...+||+|+| .+.+|+.+.+.                    .+..+.|-.||++|
T Consensus        63 ~~~hcFEi~T-~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          63 HPPHCFEIRT-TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             CCCcEEEEEe-cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            4579999999 89999997752                    34568899988753

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3551|consensus

Probab=89.88  E-value=0.98  Score=39.94  Aligned_cols=55  Identities=27%  Similarity=0.421  Sum_probs=44.4

Q ss_pred             Cccccccccccc------CCCcceEEEEeCCCC-eEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773          7 AAEIPIILVGTQ------DSDSFELLIVSLDNK-QWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus         7 ~~~i~~~~~~~~------~~~~~~F~ivt~~~r-t~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      .-.||+.++-+.      +...-+|+|-||++| |..+.|.+.++.+.|-.||+.++...+.
T Consensus       215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~  276 (506)
T KOG3551|consen  215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLLT  276 (506)
T ss_pred             ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHHH
Confidence            346777776663      556678999996655 8899999999999999999998877664

>PF15404 PH_4: Pleckstrin homology domain

Probab=86.72  E-value=0.73  Score=36.61  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=26.5

Q ss_pred             cceEEEEe---CCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVS---LDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        22 ~~~F~ivt---~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      +-.+..|+   .++|++.|.|.|-.||+.|+-+|...
T Consensus       148 ~~~~~~v~~Lg~~gks~VF~ARSRqERD~WV~~I~~E  184 (185)
T PF15404_consen  148 PNKIKMVSRLGVSGKSMVFMARSRQERDLWVLAINTE  184 (185)
T ss_pred             cCcceeccccCCCCcEEEEEeccHHHHHHHHHHHHhc
Confidence            34455443   14889999999999999999999754

>PRK12495 hypothetical protein; Provisional

Probab=83.37  E-value=3.5  Score=33.68  Aligned_cols=30  Identities=20%  Similarity=0.355  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCCCCCeeeecccceeeecccccc
Q psy17773         72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVH  105 (165)
Q Consensus        72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iH  105 (165)
                      ...+..|.+||.|=|..    -|+..|..|..+-
T Consensus        39 tmsa~hC~~CG~PIpa~----pG~~~Cp~CQ~~~   68 (226)
T PRK12495         39 TMTNAHCDECGDPIFRH----DGQEFCPTCQQPV   68 (226)
T ss_pred             ccchhhcccccCcccCC----CCeeECCCCCCcc
Confidence            67889999999998832    5999999998653

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=81.62  E-value=2.2  Score=31.09  Aligned_cols=36  Identities=17%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..+|=|..|- -+-+..|..++|.||..||+|+-.+-
T Consensus        75 gg~~ff~avk-egd~~~fa~~de~~r~lwvqa~yrat  110 (117)
T cd01234          75 GGRHFFNAVK-EGDELKFATDDENERHLWVQAMYRAT  110 (117)
T ss_pred             cchhhhheec-cCcEEEEeccchHHHHHHHHHHHHHc
Confidence            3467788886 67789999999999999999996553

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.41  E-value=1.1  Score=26.14  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCCCCeeeecccceeeeccccc-ccc
Q psy17773         75 NLTCADCAEAGPTWASLNLGLLLCIQCCGV-HRC  107 (165)
Q Consensus        75 N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i-HR~  107 (165)
                      +..|..|+.....+...+-++++|..|... |+.
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~   36 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG   36 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence            568999998888899999999999999977 886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.25  E-value=1  Score=26.87  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             CCCCCCCCCCCeeeecccceeeeccccc
Q psy17773         77 TCADCAEAGPTWASLNLGLLLCIQCCGV  104 (165)
Q Consensus        77 ~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i  104 (165)
                      .|..||+.. .-..-.-|-++|..|..|
T Consensus         2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~V   28 (43)
T PF08271_consen    2 KCPNCGSKE-IVFDPERGELVCPNCGLV   28 (43)
T ss_dssp             SBTTTSSSE-EEEETTTTEEEETTT-BB
T ss_pred             CCcCCcCCc-eEEcCCCCeEECCCCCCE
Confidence            589999976 344556799999999654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer

Probab=80.80  E-value=0.5  Score=27.36  Aligned_cols=27  Identities=22%  Similarity=0.595  Sum_probs=16.9

Q ss_pred             CCCCCCCCC-CCCeeeecccceeeeccc
Q psy17773         76 LTCADCAEA-GPTWASLNLGLLLCIQCC  102 (165)
Q Consensus        76 ~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs  102 (165)
                      ..|.+||++ .-+|..-+|+.-+|..|.
T Consensus         4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR   31 (34)
T PF01286_consen    4 PKCDECGKPFMDSYLLNNFDLPVCDKCR   31 (34)
T ss_dssp             EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred             chHhHhCCHHHHHHHHHhCCcccccccc
Confidence            479999997 568999999999999995

Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.

>KOG3549|consensus

Probab=80.42  E-value=3.1  Score=36.48  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=35.8

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      +.|++||.|.+..++..+|..+.+.|.-.|-.++|.++..
T Consensus       349 D~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf~  388 (505)
T KOG3549|consen  349 DSRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATFT  388 (505)
T ss_pred             ccccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHhH
Confidence            6778999999978999999999999999999999877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		2e-15
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		3e-15
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		4e-15
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		4e-15
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		1e-14
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		3e-14
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		6e-14
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		2e-13
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		5e-13
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		1e-12
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		3e-12
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		3e-12
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		4e-12
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		6e-12
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		6e-12
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		1e-11
2owa_A	138	Crystal Structure Of Putative Gtpase Activating Pro		1e-10
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-09
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		7e-09
2rlo_A	128	Split Ph Domain Of Pi3-Kinase Enhancer Length = 128		1e-08
2olm_A	140	Arfgap Domain Of Hiv-1 Rev Binding Protein Length =		5e-04
2d9l_A	134	Solution Structure Of The Arfgap Domain Of Human Ri		8e-04

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 41/45 (91%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           D    +NPR+ID++RAR+L++DLKRC+YYETCATYGLNV+RVFQD
Sbjct: 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 72  VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW-PE 125
           V GN  C DC E  P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W PE
Sbjct: 42  VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPE 96

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 72  VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW-PE 125
           V GN  C DC E  P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W PE
Sbjct: 42  VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPE 96

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 72  VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW-PE 125
           V GN  C DC E  P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W PE
Sbjct: 42  VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPE 96

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 75  NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDE- 133
           N  CADC   GP WAS N+G+ +CI+C G+HR LG H+SRV+S+ LD+W +   + + E 
Sbjct: 27  NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86
Query: 134 --ARARRL 139
              +A RL
Sbjct: 87  GNGKANRL 94

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           D    S+PR++ +ARAR L +D+KRCSYYETCATYGLNVDRVFQ+
Sbjct: 118 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQE 162

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 75  NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 123
           N  CADC   GP WAS N+G+ +CI+C G+HR LG H+SRV+S+ LD+W
Sbjct: 29  NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 77

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           D    S+PR++ +ARAR L +D+KRCSYYET ATYGLNVDRVFQ+
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
           +  ++SR PGN  C DC  A PTW S NLG+L CIQC GVHR LG   SR++SL LD
Sbjct: 14  IAEVKSR-PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 69

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
           +  ++SR PGN  C DC  A PTW S NLG+L CIQC GVHR LG   SR++SL LD
Sbjct: 33  IAEVKSR-PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 88

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 75  NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEA 134
           N  C DC  + P W S+N G+ LCI C GVHR LG H+S VRS+++D + +   + ID+ 
Sbjct: 22  NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 135 RARR 138
             ++
Sbjct: 82  GNKK 85

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 52  IQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAH 111
           + ++I+S +Q         R+ GN  C DC    PTW S NLG+L CI+C G+HR LG H
Sbjct: 3   LTKEIISEVQ---------RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVH 53
Query: 112 VSRVRSLELD 121
            SR++SL LD
Sbjct: 54  YSRMQSLTLD 63

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 72  VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
           VP N  C DC    P+WAS+  G+ LCI C GVHR LG H+S +RS ELD
Sbjct: 34  VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD 83

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 73  PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRII- 131
           PGN  CADC    P WAS  LG+ +C+ C G+HR +   VS+V+S+ LD W E+    + 
Sbjct: 34  PGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMA 92
Query: 132 ----DEARAR 137
               D ARAR
Sbjct: 93  SHGNDAARAR 102

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 73  PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRII- 131
           PGN  CADC    P WAS  LG+ +C+ C G+HR +   VS+V+S+ LD W E+    + 
Sbjct: 32  PGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMA 90
Query: 132 ----DEARAR 137
               D ARAR
Sbjct: 91  SHGNDAARAR 100

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE 122
            + +RS VP N  C DC    P+WAS+  G+ LCI C G HR LG H+S +RS ELD 
Sbjct: 20  FKRLRS-VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 76

>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 60  LQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
           L+    Q +R+R P N TC DC    PTW SL+  + +C+ C   HR +G H+S VRS +
Sbjct: 22  LRDNFFQIVRNR-PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSD 80
Query: 120 LDEW 123
           LD++
Sbjct: 81  LDKF 84

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 54  QQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVS 113
           Q + S      L+ +R +   N+ C +C    P W S+  G+ +C++C G HR LG H+S
Sbjct: 17  QGMASPRTRKVLKEVRVQDENNV-CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLS 75
Query: 114 RVRSLELDEWPE 125
            VRS+ +D+W +
Sbjct: 76  FVRSVTMDKWKD 87

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 75  NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPE 125
           N  C +C    P W S+  G+ +C++C G HR LG H+S VRS+ +D+W +
Sbjct: 38  NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 88

>pdb|2RLO|A Chain A, Split Ph Domain Of Pi3-Kinase Enhancer Length = 128

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 16  GTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61
           G  + ++FE LIVS   + W FEAA+ EERD W+ AI+ QIL+SLQ
Sbjct: 83  GQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ 128

>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 72  VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
           +P N  C DC + GPT+ ++ +G  +C  C G  R L     RV+S+ +
Sbjct: 22  LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISM 69

>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 72  VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
           +P N  C DC + GPT+ ++ +G  +C  C G  R L     RV+S+ +
Sbjct: 17  LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISM 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	8e-30
2owa_A	138	Arfgap-like finger domain containing protein; zinc	1e-29
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	2e-29
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-29
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	5e-29
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-28
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-28
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-28
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	1e-27
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	3e-26
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	2e-25
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	2e-24
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	3e-24
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-20
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-13
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	1e-12
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-08
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	7e-05
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	7e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-04
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	3e-04
2d9v_A	130	Pleckstrin homology domain-containing protein fami	3e-04
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	3e-04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-04
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	7e-04
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-04
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	9e-04

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  105 bits (263), Expect = 8e-30
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 50  AAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLG 109
           ++ + Q L+      L  +  R   N  CADC   GP WAS N+G+ +CI+C G+HR LG
Sbjct: 5   SSGKAQKLNEQHQLILSKLL-REEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLG 63

Query: 110 AHVSRVRSLELDEWPES 126
            H+SRV+S+ LD+W   
Sbjct: 64  VHISRVKSVNLDQWTAE 80

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score =  104 bits (261), Expect = 1e-29
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 53  QQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHV 112
           +  +   L+    Q +R+R P N TC DC    PTW SL+  + +C+ C   HR +G H+
Sbjct: 15  KGFVSDKLRDNFFQIVRNR-PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHI 73

Query: 113 SRVRSLELDEWPESN 127
           S VRS +LD++    
Sbjct: 74  SFVRSSDLDKFTPIQ 88

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score =  104 bits (261), Expect = 2e-29
 Identities = 25/71 (35%), Positives = 40/71 (56%)

Query: 57  LSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVR 116
           +++     +  ++     N  C DC  + P W S+N G+ LCI C GVHR LG H+S VR
Sbjct: 4   MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVR 63

Query: 117 SLELDEWPESN 127
           S+++D + +  
Sbjct: 64  SIKMDIFTDEQ 74

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  107 bits (268), Expect = 3e-29
 Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 60  LQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
           L    +  ++ R+ GN  C DC    PTW S NLG+L CI+C G+HR LG H SR++SL 
Sbjct: 3   LTKEIISEVQ-RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLT 61

Query: 120 LDEWPES 126
           LD    S
Sbjct: 62  LDVLGTS 68

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score =  102 bits (257), Expect = 5e-29
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 53  QQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHV 112
           +         A L ++      N  CADC   GP WAS N+G+ +CI+C G+HR LG H+
Sbjct: 6   KSVKDVDRYQAVLANLL-LEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHI 64

Query: 113 SRVRSLELDEWPES 126
           SRV+S+ LD+W + 
Sbjct: 65  SRVKSVNLDQWTQE 78

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  106 bits (265), Expect = 1e-28
 Identities = 34/66 (51%), Positives = 38/66 (57%)

Query: 61  QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
            T  L +     PGN  C DC  A PTW S NLG+L CIQC GVHR LG   SR++SL L
Sbjct: 28  LTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTL 87

Query: 121 DEWPES 126
           D    S
Sbjct: 88  DLLGPS 93

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  107 bits (268), Expect = 1e-28
 Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           +  ++  V GN  C DC E  P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W 
Sbjct: 36  VAQVQ-SVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWE 94

Query: 125 ES 126
             
Sbjct: 95  PE 96

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  106 bits (266), Expect = 8e-28
 Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 53  QQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHV 112
                  L    +  ++   PGN  C DC  A PTW S NLG+L CIQC GVHR LG   
Sbjct: 2   HDGEPHDLTKLLIAEVK-SRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRF 60

Query: 113 SRVRSLELDEWPESN 127
           SR++SL LD    S 
Sbjct: 61  SRMQSLTLDLLGPSE 75

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score =   99 bits (249), Expect = 1e-27
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 39  AANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLC 98
           +++           +  + S      L+ +R +   N  C +C    P W S+  G+ +C
Sbjct: 3   SSHHHHHHSSGLVPRGSMASPRTRKVLKEVRVQ-DENNVCFECGAFNPQWVSVTYGIWIC 61

Query: 99  IQCCGVHRCLGAHVSRVRSLELDEWPES 126
           ++C G HR LG H+S VRS+ +D+W + 
Sbjct: 62  LECSGRHRGLGVHLSFVRSVTMDKWKDI 89

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  101 bits (253), Expect = 3e-26
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 63  ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE 122
            ++  +  + PGN  CADC    P WAS  LG+ +C+ C G+HR +   VS+V+S+ LD 
Sbjct: 23  RAVLELL-QRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDA 80

Query: 123 WPES 126
           W E+
Sbjct: 81  WEEA 84

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score = 93.7 bits (233), Expect = 2e-25
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 39  AANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLC 98
            ++++ + +       ++L  +           +P N  C DC + GPT+ ++ +G  +C
Sbjct: 1   GSSAKRKQE---EKHLKMLRDMT---------GLPHNRKCFDCDQRGPTYVNMTVGSFVC 48

Query: 99  IQCCGVHRCLGAHVSRVRSLELDEWPES 126
             C G  R L     RV+S+ +  + + 
Sbjct: 49  TSCSGSLRGLNPP-HRVKSISMTTFTQQ 75

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score = 91.6 bits (227), Expect = 2e-24
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-W 123
            + +RS  P N  C DC    P+WAS+  G+ LCI C G HR LG H+S +RS ELD  W
Sbjct: 20  FKRLRSV-PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78

Query: 124 PES 126
              
Sbjct: 79  SWF 81

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score = 91.2 bits (226), Expect = 3e-24
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-W 123
            + +R+  P N  C DC    P+WAS+  G+ LCI C GVHR LG H+S +RS ELD  W
Sbjct: 28  FKRLRAV-PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86

Query: 124 PES 126
              
Sbjct: 87  NWF 89

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 83.4 bits (206), Expect = 6e-20
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
           L+ +R +   N  C +C    P W S+  G+ +C++C G HR LG H+S VRS+ +D+W 
Sbjct: 28  LKEVRVQ-DENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWK 86

Query: 125 ES 126
           + 
Sbjct: 87  DI 88

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 62.2 bits (152), Expect = 7e-13
 Identities = 31/42 (73%), Positives = 40/42 (95%)

Query: 124 PESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
             +NPR+ID++RAR+L++DLKRC+YYETCATYGLNV+RVFQD
Sbjct: 132 SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 60.6 bits (146), Expect = 1e-12
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 1   MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL 60
                          G  + ++FE LIVS   + W FEAA+ EERD W+ AI+ QIL+SL
Sbjct: 68  PRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127

Query: 61  Q 61
           Q
Sbjct: 128 Q 128

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
            S+PR++ +ARAR L +D+KRCSYYET ATYGLNVDRVFQ+
Sbjct: 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 15  VGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
           +   D DS    + +   +Q++  A +++ER  W++ +Q       +   
Sbjct: 62  ISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIG 111

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 11/50 (22%), Positives = 16/50 (32%)

Query: 5   RNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
           R   E          S    L IV  D K     A ++++   W   +Q 
Sbjct: 59  RTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQD 108

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R++ + + + LA     C++ E+ A   +NV+ +F D
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 15 VGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT 62
          +    +D+  + ++    + +  +A N+ ER  W+ A+     S   T
Sbjct: 51 IKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTDT 98

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 6/50 (12%), Positives = 15/50 (30%)

Query: 5   RNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
           +   E   +      S    L +   +  +    A   ++   W  A+ +
Sbjct: 62  KVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALME 111

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 1   MSHYRNAAEIP---IILVGTQDSDS--FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ 55
           MS +    +IP   +++    + +       I     ++      N+++  +W+  + + 
Sbjct: 65  MSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRL 124

Query: 56  ILSS 59
             S 
Sbjct: 125 TKSG 128

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R +  + A  LA   K C++ ET A    NV  +FQ+
Sbjct: 125 REVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQE 160

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R +  +  R LA +   C + ET A     VD +F +
Sbjct: 124 REVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAE 159

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R +D   A+ +A + K C++ ET A    NV  +FQ+
Sbjct: 129 REVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQE 164

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R +    A+  A      +Y ET A    NVD+VF D
Sbjct: 139 RQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFD 174

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R +  + A    +     +Y+E  A   LNVD  F+ 
Sbjct: 130 RQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQ 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	100.0
2owa_A	138	Arfgap-like finger domain containing protein; zinc	100.0
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	100.0
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	100.0
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.97
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.96
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	98.98
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	98.98
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	98.91
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	98.86
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	98.85
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	98.85
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	98.83
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.82
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	98.78
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	98.77
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	98.77
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	98.73
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	98.69
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	98.68
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	98.68
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	98.68
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	98.67
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	98.67
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	98.67
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	98.67
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	98.66
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	98.65
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	98.63
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	98.62
1wi1_A	126	Calcium-dependent activator protein for secretion,	98.62
2dkp_A	128	Pleckstrin homology domain-containing family A mem	98.62
3cxb_B	112	Pleckstrin homology domain-containing family M mem	98.62
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	98.6
2yry_A	122	Pleckstrin homology domain-containing family A mem	98.6
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.6
2d9y_A	117	Pleckstrin homology domain-containing protein fami	98.6
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	98.59
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	98.58
2d9v_A	130	Pleckstrin homology domain-containing protein fami	98.56
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	98.56
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	98.53
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	98.53
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	98.51
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	98.51
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.5
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	98.49
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	98.47
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.47
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	98.46
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.44
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	98.43
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	98.43
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.42
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	98.41
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	98.25
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	98.22
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	98.18
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.16
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	98.13
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	98.13
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	98.08
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	97.98
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.94
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	97.88
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	97.75
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.71
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	97.64
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	97.63
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	97.62
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.52
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	97.29
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	97.25
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	97.18
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	96.98
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	96.81
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.42
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	96.4
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	96.35
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	96.25
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	96.22
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	96.21
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	96.04
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.04
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	96.03
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	96.03
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	95.9
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	95.87
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	95.78
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	95.73
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	95.72
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	95.71
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	95.63
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	95.4
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	95.37
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	95.36
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	95.36
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	95.35
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	95.16
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	95.07
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	94.95
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	94.8
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	94.66
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	89.69
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	86.79
3dfx_A	63	Trans-acting T-cell-specific transcription factor	85.36
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	83.56
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	83.12
1u5k_A	244	Hypothetical protein; OBD-fold, Zn-binding, recomb	81.14
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	80.3

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=233.41  Aligned_cols=94  Identities=36%  Similarity=0.702  Sum_probs=89.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +.+|+.|++ .|+|+.|||||+++|+|+|+|+|||+|++|||+||.||+|||+||||+||.|++++|+.| +.+||..+|
T Consensus        15 ~~~l~~L~~-~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m-~~~GN~~an   92 (134)
T 2iqj_A           15 QAVLANLLL-EEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM-QEMGNGKAN   92 (134)
T ss_dssp             HHHHHHHTT-SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH-HTCHHHHHH
T ss_pred             HHHHHHHHc-CcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH-HHHchHHHH
Confidence            567889998 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCCCCCCC
Q psy17773        142 DLKRCSYYETCATYGL  157 (165)
Q Consensus       142 ~~~e~~~~~~~~~~~~  157 (165)
                      ++||+++|+...+|..
T Consensus        93 ~~~e~~lp~~~~~P~~  108 (134)
T 2iqj_A           93 RLYEAYLPETFRRPQI  108 (134)
T ss_dssp             HHHTTTCCSSCCCCCS
T ss_pred             HHHHhcCCccCCCCCc
Confidence            9999999998766643

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=233.39  Aligned_cols=94  Identities=34%  Similarity=0.660  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +.+|+.|++ .|+|+.|||||+++|+|+|+|+|||||++|+|+||.||+|||+||||+||.|++++|++| +.+||..+|
T Consensus        17 ~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m-~~~GN~~an   94 (141)
T 2crr_A           17 QLILSKLLR-EEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCM-QDMGNTKAR   94 (141)
T ss_dssp             HHHHHHHHH-SGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHH-HHTHHHHHH
T ss_pred             HHHHHHHHh-CccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHH-HHHccHHHH
Confidence            567889998 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCCCCCCC
Q psy17773        142 DLKRCSYYETCATYGL  157 (165)
Q Consensus       142 ~~~e~~~~~~~~~~~~  157 (165)
                      ++||+++|+...+|..
T Consensus        95 ~~~e~~lp~~~~~P~~  110 (141)
T 2crr_A           95 LLYEANLPENFRRPQT  110 (141)
T ss_dssp             HHGGGSCCTTCCCCCS
T ss_pred             HHHHhcCCcccCCCCc
Confidence            9999999998766643

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.6e-37  Score=232.48  Aligned_cols=103  Identities=26%  Similarity=0.567  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773         61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA  140 (165)
Q Consensus        61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~  140 (165)
                      .+++|+.|++ .|+|+.|+|||+++|+|+|+|||||+|++|+|+||.||+|||+||||+||.|++++|+.| +.+||.++
T Consensus        25 ~~~~l~~L~~-~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m-~~~GN~~a  102 (147)
T 3dwd_A           25 TRKVLKEVRV-QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKF  102 (147)
T ss_dssp             HHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHH-HHCCHHHH
T ss_pred             HHHHHHHHHc-CcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHH-HHHhhHHH
Confidence            3678899998 999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHhhhcCC--CC---CCCCCCCCCccccC
Q psy17773        141 SDLKRCSYY--ET---CATYGLNVDRVFQD  165 (165)
Q Consensus       141 n~~~e~~~~--~~---~~~~~~~~~~~~~~  165 (165)
                      |+|||++..  +.   ..||.+.+..+|||
T Consensus       103 n~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~  132 (147)
T 3dwd_A          103 REFLESQEDYDPCWSLQEKYNSRAAALFRD  132 (147)
T ss_dssp             HHHHHTSTTCCTTCCHHHHHTSHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCHHHhhCCHHHHHHHH
Confidence            999999742  11   24788888777764

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.4e-37  Score=232.32  Aligned_cols=101  Identities=27%  Similarity=0.471  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +.+++.|++ .|+|+.|||||+++|+|+|+|||||+|++|||+||.||+|||+|||++||.|++++|+.| +.+||..+|
T Consensus        24 ~~l~~~l~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m-~~~GN~~an  101 (138)
T 2owa_A           24 DNFFQIVRN-RPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRM-DIGGNGRAR  101 (138)
T ss_dssp             HHHHHHHHH-SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHH-HHCCHHHHH
T ss_pred             HHHHHHHHc-CcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHH-HhhccHHHH
Confidence            445677888 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCC-----CCCCCCCCCcccc
Q psy17773        142 DLKRCSYYET-----CATYGLNVDRVFQ  164 (165)
Q Consensus       142 ~~~e~~~~~~-----~~~~~~~~~~~~~  164 (165)
                      ++||++....     ..+|++.+...|+
T Consensus       102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~  129 (138)
T 2owa_A          102 NYFKQVLGVNFSPKTKEYASSICGRQYK  129 (138)
T ss_dssp             HHHHHHTCTTCCGGGCHHHHSHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHhhHHHHHHH
Confidence            9999943321     2345555555554

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=7.3e-37  Score=232.11  Aligned_cols=102  Identities=35%  Similarity=0.677  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCC-CCCchHHHHHHHhhHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-WPESNPRIIDEARARRLA  140 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~-w~~~~v~~~~~~~GN~~~  140 (165)
                      +.+++.|++ .|+|+.|||||+++|+|+|+|||||||++|+|+||.||+|||+|||++||. |++++|+.| +.+||.++
T Consensus        17 ~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m-~~~GN~~a   94 (149)
T 2crw_A           17 LTIFKRLRS-VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASA   94 (149)
T ss_dssp             HHHHHHHHH-STTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH-HTTCHHHH
T ss_pred             HHHHHHHhc-CcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH-HHHhhHHH
Confidence            346788888 999999999999999999999999999999999999999999999999995 999999999 99999999


Q ss_pred             HHHhhhcCCCCC---CCCCCCCCccccC
Q psy17773        141 SDLKRCSYYETC---ATYGLNVDRVFQD  165 (165)
Q Consensus       141 n~~~e~~~~~~~---~~~~~~~~~~~~~  165 (165)
                      |++||++.....   .+|..++...|||
T Consensus        95 n~~~e~~~~~~~~i~~KY~s~~a~~Yr~  122 (149)
T 2crw_A           95 SSFFHQHGCSTNDTNAKYNSRAAQLYRE  122 (149)
T ss_dssp             HHHHHHHCCCCCCHHHHTTSHHHHHHHH
T ss_pred             HHHHHhcCCCCcchhhCcCcHHHHHHHH
Confidence            999999987643   3777777777764

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.4e-36  Score=232.32  Aligned_cols=103  Identities=26%  Similarity=0.563  Sum_probs=94.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      .++|+.|++..|+|+.|||||+++|+|+|+|+|||+|++|||+||.||+|||+||||+||.|++++|+.| +.+||.++|
T Consensus         9 ~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m-~~~GN~~an   87 (163)
T 3sub_A            9 VEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYI-DKGGNKKCQ   87 (163)
T ss_dssp             HHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHH-HHCCHHHHH
T ss_pred             HHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHH-HhhCHHHHH
Confidence            5678888886799999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCC---CCCCCCCCccccC
Q psy17773        142 DLKRCSYYETC---ATYGLNVDRVFQD  165 (165)
Q Consensus       142 ~~~e~~~~~~~---~~~~~~~~~~~~~  165 (165)
                      ++||++.....   .+|.+.+..+||+
T Consensus        88 ~~~e~~g~~~~~p~~KY~s~aA~~Yr~  114 (163)
T 3sub_A           88 TYLENYGISDFIPERKYRTKAADHYRK  114 (163)
T ss_dssp             HHHHHTTCTTSCHHHHTTBHHHHHHHH
T ss_pred             HHHHHcCCcccChhhcCCCHHHHHHHH
Confidence            99999876654   3788887777764

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=1.9e-35  Score=222.67  Aligned_cols=92  Identities=21%  Similarity=0.505  Sum_probs=85.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      ...|+.|++ .|+|+.|||||+++|+|+|+|||||||++|||+||.||+| |+||||+||.|++++|++| +.+||..+|
T Consensus        13 ~~~l~~l~~-~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m-~~~GN~~an   89 (140)
T 2olm_A           13 LKMLRDMTG-LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFL-QKHGNEVCK   89 (140)
T ss_dssp             HHHHHHHHT-SGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHH-HHCHHHHHH
T ss_pred             HHHHHHHhc-CcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHH-HHhccHHHH
Confidence            567888888 9999999999999999999999999999999999999996 9999999999999999999 999999999


Q ss_pred             HHhhhcCCCCC-CCCC
Q psy17773        142 DLKRCSYYETC-ATYG  156 (165)
Q Consensus       142 ~~~e~~~~~~~-~~~~  156 (165)
                      ++||+++++.. .+|.
T Consensus        90 ~~~e~~~~~~~~~~P~  105 (140)
T 2olm_A           90 QIWLGLFDDRSSAIPD  105 (140)
T ss_dssp             HHHTTTCCTTTSCCCC
T ss_pred             HHHHhhCCcccCCCCC
Confidence            99999998743 3443

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=228.42  Aligned_cols=102  Identities=33%  Similarity=0.681  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCC-CCCchHHHHHHHhhHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-WPESNPRIIDEARARRLA  140 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~-w~~~~v~~~~~~~GN~~~  140 (165)
                      +++++.|++ .|+|+.|+|||+++|+|+|+|||||+|++|+|+||.||+|||+|||++||. |++++|+.| +.+||.++
T Consensus        25 ~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m-~~~GN~~a  102 (144)
T 2p57_A           25 QTLFKRLRA-VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGNANA  102 (144)
T ss_dssp             HHHHHHHHH-SGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHH-HHCCHHHH
T ss_pred             HHHHHHHhc-CCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHH-HHhCHHHH
Confidence            456788888 999999999999999999999999999999999999999999999999996 999999999 99999999


Q ss_pred             HHHhhhcCCCC---CCCCCCCCCccccC
Q psy17773        141 SDLKRCSYYET---CATYGLNVDRVFQD  165 (165)
Q Consensus       141 n~~~e~~~~~~---~~~~~~~~~~~~~~  165 (165)
                      |++|+++....   ..+|.+++..+|||
T Consensus       103 n~~~e~~g~~~~~~~~KY~s~aA~~Yr~  130 (144)
T 2p57_A          103 TAFFRQHGCTANDANTKYNSRAAQMYRE  130 (144)
T ss_dssp             HHHHHHTTCCCCSHHHHHTSHHHHHHHH
T ss_pred             HHHHHHcCCCCCchhhccCcHHHHHHHH
Confidence            99999875432   24687777777764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.97  E-value=7.4e-32  Score=230.14  Aligned_cols=97  Identities=36%  Similarity=0.710  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      .++++.|++ .|+|+.|||||+++|+|+|+|+|||+|++|+||||.||+|||+||||+||.|++++|++| +.+||..+|
T Consensus        33 ~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~-~~~gn~~~n  110 (368)
T 3jue_A           33 GHVVAQVQS-VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM-CELGNVIIN  110 (368)
T ss_dssp             CCHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH-HHSCHHHHH
T ss_pred             HHHHHHHHc-CCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHH-HHHccHHHH
Confidence            357899999 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCC-CCCCCCCC
Q psy17773        142 DLKRCSYYETC-ATYGLNVD  160 (165)
Q Consensus       142 ~~~e~~~~~~~-~~~~~~~~  160 (165)
                      ++||+++++.. .+|....+
T Consensus       111 ~~~e~~~~~~~~~kp~~~~~  130 (368)
T 3jue_A          111 QIYEARVEAMAVKKPGPSCS  130 (368)
T ss_dssp             HHHTTTTTTTTCCCCCTTSC
T ss_pred             HHHHhhcccccCcCCCCCCC
Confidence            99999999854 45554443

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.97  E-value=5.7e-32  Score=232.74  Aligned_cols=96  Identities=28%  Similarity=0.577  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      .++|+.|++ .|+|+.|||||+++|+|||+|+|||+|++|||+||.| +|||+||||+||.|++++|+.| +.+||..+|
T Consensus        22 ~~~l~~l~~-~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~-~~~gN~~~~   98 (386)
T 3lju_X           22 RRAVLELLQ-RPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFM-ASHGNDAAR   98 (386)
T ss_dssp             HHHHHHHTT-SGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHH-HHSSHHHHH
T ss_pred             HHHHHHHhc-CcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHH-HHhcchHHH
Confidence            567899998 9999999999999999999999999999999999999 9999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCCCCCCCCCC
Q psy17773        142 DLKRCSYYETCATYGLNVD  160 (165)
Q Consensus       142 ~~~e~~~~~~~~~~~~~~~  160 (165)
                      ++||+++|+...+|....+
T Consensus        99 ~~~e~~~~~~~~~p~~~~~  117 (386)
T 3lju_X           99 ARFESKVPSFYYRPTPSDC  117 (386)
T ss_dssp             HHHTTTCCTTSCCCCTTSC
T ss_pred             HHHhccCCccCCCCCCccc
Confidence            9999999998777766554

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.4e-30  Score=217.22  Aligned_cols=87  Identities=28%  Similarity=0.604  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773         61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA  140 (165)
Q Consensus        61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~  140 (165)
                      .++.++.|++ .|+|+.|||||+++|+|+|+|+|||+|++|||+||.||+|||+|||++||.|++++++.| +.+||.++
T Consensus        24 ~~~~~~~~~~-~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~-~~~gN~~~  101 (329)
T 3o47_A           24 TRKVLKEVRV-QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKF  101 (329)
T ss_dssp             HHHHHHHHHH-STTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHH-HHCCHHHH
T ss_pred             HHHHHHHHHc-CCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHH-HHhCcHHH
Confidence            3667889998 999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHhhhcCC
Q psy17773        141 SDLKRCSYY  149 (165)
Q Consensus       141 n~~~e~~~~  149 (165)
                      |++||++..
T Consensus       102 n~~~e~~~~  110 (329)
T 3o47_A          102 REFLESQED  110 (329)
T ss_dssp             HHHHHTCSS
T ss_pred             HHHHHhcCC
Confidence            999999754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.96  E-value=1.2e-29  Score=207.43  Aligned_cols=96  Identities=31%  Similarity=0.582  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      ++.++.|++ .|+|+.|+|||+++|+|+|+|||+|+|++|||+||.||+|||+|||++||.|+++++..| ..+||..+|
T Consensus         5 ~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~-~~~GN~~~n   82 (278)
T 1dcq_A            5 KEIISEVQR-MTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLA-KNIGNAGFN   82 (278)
T ss_dssp             HHHHHHHHH-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHH-HHSCHHHHH
T ss_pred             HHHHHHHHc-CCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHH-HHcCcHHHH
Confidence            456888998 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCCC-CCCCCC
Q psy17773        142 DLKRCSYYETCA-TYGLNV  159 (165)
Q Consensus       142 ~~~e~~~~~~~~-~~~~~~  159 (165)
                      ++||+.+|.... +|....
T Consensus        83 ~i~e~~l~~~~~~kP~~~s  101 (278)
T 1dcq_A           83 EIMECCLPSEDPVKPNPGS  101 (278)
T ss_dssp             HHHTTTCCSSSCCSCCTTC
T ss_pred             HHHHhhCChhhcCCCCCCC
Confidence            999999988764 555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.96  E-value=1.6e-29  Score=208.99  Aligned_cols=97  Identities=34%  Similarity=0.557  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773         61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA  140 (165)
Q Consensus        61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~  140 (165)
                      .+.+++.|++ .|+|+.|+|||+++|+|+|+|+|+|+|++|||+||.||+|+|+|||++||.|+++++..| ..+||..+
T Consensus        29 ~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~-~~~GN~~~  106 (301)
T 2b0o_E           29 TKLLIAEVKS-RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLA-LNMGNTSF  106 (301)
T ss_dssp             HHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH-HHCCHHHH
T ss_pred             HHHHHHHHhc-CCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHH-HHcCCHHH
Confidence            3556788888 999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHhhhcCCCC-CCCCCCCC
Q psy17773        141 SDLKRCSYYET-CATYGLNV  159 (165)
Q Consensus       141 n~~~e~~~~~~-~~~~~~~~  159 (165)
                      |++||+.+++. ..+|....
T Consensus       107 n~i~E~~l~~~~~~kP~~~s  126 (301)
T 2b0o_E          107 NEVMEAQLPSHGGPKPSAES  126 (301)
T ss_dssp             HHHHTTTCCSSSCSCCCTTC
T ss_pred             HHHHHHhhhhccCCCCCCcc
Confidence            99999999886 45554433

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.95  E-value=1.3e-29  Score=221.74  Aligned_cols=98  Identities=35%  Similarity=0.565  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHH
Q psy17773         60 LQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL  139 (165)
Q Consensus        60 l~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~  139 (165)
                      +.+..++.+++ .|+|+.|+|||+++|+|+|+|+|||+|++|||+||.||+|||+|||++||.|+++++++| +.+||..
T Consensus         9 ~~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~-~~~GN~~   86 (497)
T 3lvq_E            9 LTKLLIAEVKS-RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLA-LNMGNTS   86 (497)
T ss_dssp             HHHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTT-TTCCHHH
T ss_pred             HHHHHHHHHhc-CCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHH-HHHhhHH
Confidence            34567888998 999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHHhhhcCCCCC-CCCCCCC
Q psy17773        140 ASDLKRCSYYETC-ATYGLNV  159 (165)
Q Consensus       140 ~n~~~e~~~~~~~-~~~~~~~  159 (165)
                      +|.+||+.+|+.. .+|....
T Consensus        87 an~i~E~~lp~~~~~kP~~~s  107 (497)
T 3lvq_E           87 FNEVMEAQLPSHGGPKPSAES  107 (497)
T ss_dssp             HHHHHTTTCCSSSCSCCCTTC
T ss_pred             HHHHHHhhcccccCCCCCCcC
Confidence            9999999998765 4444433

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=6.3e-10  Score=78.95  Aligned_cols=59  Identities=14%  Similarity=0.315  Sum_probs=44.9

Q ss_pred             CCCCCCCccccc-----ccccc--cCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773          1 MSHYRNAAEIPI-----ILVGT--QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus         1 ~s~y~~~~~i~~-----~~~~~--~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      |+||+.....+.     ..+.+  ..+++++|+|++ ++|+|+|+|+|++|++.||.+|+.++...+
T Consensus        39 L~yyk~~~~~~~~~i~l~~~~v~~~~~~~~~F~I~~-~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~  104 (114)
T 2da0_A           39 LTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLIS-HNRTYHFQAEDEQDYVAWISVLTNSKEEAL  104 (114)
T ss_dssp             EEECCSSCCSCCEEEETTTSEEEECSSSSSCEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCEEEeeeeEEEECCCCCCEEEEEc-CCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence            467777654322     22222  256789999998 899999999999999999999999887654

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=98.98  E-value=7e-10  Score=80.33  Aligned_cols=42  Identities=57%  Similarity=0.960  Sum_probs=37.6

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      +++|+|+|+|+.+|+|+|+|+|++||+.||+||+.+|..+|+
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l~  128 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ  128 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence            578999999943499999999999999999999999988764

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.91  E-value=1.1e-09  Score=78.49  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=35.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..++|+|.|++++.++|+|||+|++||++||.+|+.++..
T Consensus        79 ~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~  118 (123)
T 1wjm_A           79 RKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             SSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4578999999855699999999999999999999987753

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=98.86  E-value=2.4e-09  Score=78.09  Aligned_cols=40  Identities=18%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..++++|+|.|++.++|+|||+|++||++||.+|+.+|..
T Consensus        86 ~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~  125 (129)
T 2p0d_A           86 SSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIER  125 (129)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4567999999855789999999999999999999998864

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=98.85  E-value=1.9e-09  Score=74.56  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..++++|.|+++++++|+|+|+|++|+.+||.+|+.+
T Consensus        70 ~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           70 KKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            4567999999855699999999999999999999864

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=98.85  E-value=3.7e-09  Score=75.85  Aligned_cols=40  Identities=15%  Similarity=0.290  Sum_probs=35.5

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..++|+|.|+|+++++|+|||+|++||.+||.+|+.+|..
T Consensus        81 ~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           81 TKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             SSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4567999999767899999999999999999999988753

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=98.83  E-value=1.6e-09  Score=74.03  Aligned_cols=36  Identities=31%  Similarity=0.636  Sum_probs=33.3

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..+.++|.|++ ++|+|+|+|+|++|++.||.||+++
T Consensus        57 ~~~~~~F~i~~-~~r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           57 DFDECRFDISV-NDSVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             SSCSSEEEEEE-TTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred             cccceeEEEEe-CCeEEEEECCCHHHHHHHHHHHHhh
Confidence            56679999999 8999999999999999999999976

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=3.1e-09  Score=75.86  Aligned_cols=58  Identities=17%  Similarity=0.369  Sum_probs=43.8

Q ss_pred             CCCCCCCcc--------ccccccccc--CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE--------IPIILVGTQ--DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         1 ~s~y~~~~~--------i~~~~~~~~--~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      |+||+...+        |++..+.+.  .+++++|+|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus        38 L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  105 (120)
T 2d9x_A           38 LEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQH  105 (120)
T ss_dssp             EEEESSGGGSSSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCcccCCCccceEEcceEEEEecCCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            467765543        444444442  4567999999833599999999999999999999987754

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=98.78  E-value=4e-09  Score=72.90  Aligned_cols=58  Identities=19%  Similarity=0.420  Sum_probs=43.6

Q ss_pred             CCCCCCCcc--------ccccccccc--CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE--------IPIILVGTQ--DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         1 ~s~y~~~~~--------i~~~~~~~~--~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      |+||+...+        |++..+.+.  .++.++|.|+++.+|+|+|+|+|++|++.||.+|+.++..
T Consensus        27 L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~   94 (103)
T 3rcp_A           27 LSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKAS   94 (103)
T ss_dssp             EEEESSCC---CCCSCEEEGGGCEEECCTTCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred             EEEEecCCcccCCcccEEEeeeeEEEEcCCCCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            467766542        444444442  4568999999944899999999999999999999987643

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.77  E-value=1.5e-08  Score=74.74  Aligned_cols=61  Identities=13%  Similarity=0.297  Sum_probs=45.3

Q ss_pred             CCCCCCCc-------cccccccccc----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773          1 MSHYRNAA-------EIPIILVGTQ----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus         1 ~s~y~~~~-------~i~~~~~~~~----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      |.||+...       .|++..+.+.    ..++|+|+|+++..|+|+|+|++++|++.||.+|+.++.....
T Consensus        57 L~yy~~~~~~~~~~g~I~L~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~~~  128 (150)
T 1wg7_A           57 LNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFE  128 (150)
T ss_dssp             EEEESSSCCSSCCSEEECTTTCCEECCCCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCcCcEEecccCEEEecCCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhhhH
Confidence            35666554       2454444432    3567999999933599999999999999999999998876553

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=6.7e-09  Score=74.17  Aligned_cols=57  Identities=16%  Similarity=0.175  Sum_probs=42.9

Q ss_pred             CCCCCCCcc------ccccccccc---CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE------IPIILVGTQ---DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~~~---~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      |.||+...+      |++..+.+.   ..+.++|.|++ ++|+|+|+|++++|++.||.+|+.++..
T Consensus        40 L~Yy~~~~~~~~~g~I~L~~~~~~~~~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~~~~  105 (119)
T 2dhk_A           40 LYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKT-PSRVITLKAATKQAMLYWLQQLQMKRWE  105 (119)
T ss_dssp             EEEESSTTCCSCSEEEEGGGCEEEECTTGGGCEEEEEC-SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcccccEEECCCCEEEecCCCCCCEEEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            457776554      333333321   34579999998 7999999999999999999999987754

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.73  E-value=8e-09  Score=72.26  Aligned_cols=39  Identities=18%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++|+|.|+++..|+|+|+|+|++|++.||.+|+.++.
T Consensus        63 ~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~  101 (107)
T 2cof_A           63 PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESG  101 (107)
T ss_dssp             TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             CCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            345799999994389999999999999999999997654

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.69  E-value=1.8e-08  Score=72.30  Aligned_cols=47  Identities=13%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             cccccccccc-------CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVGTQ-------DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus         9 ~i~~~~~~~~-------~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .||+..+.+.       .+++|+|+|+. +.++|+|+|+|++++++||.+|+.+.
T Consensus        52 ~I~L~g~~V~~~~~~~~~~~~~~Fki~~-~~~~y~f~A~s~e~~~~Wl~al~~A~  105 (112)
T 2coc_A           52 TIPLPSCKLSVPDPEERLDSGHVWKLQW-AKQSWYLSASSAELQQQWLETLSTAA  105 (112)
T ss_dssp             EECGGGCEEECCCSSSCCSSSEEEEEEE-TTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCEEEecCcccccCCCCEEEEec-CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            3677666654       34679999997 88999999999999999999998764

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=98.68  E-value=1.8e-08  Score=70.61  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      +++|.|+++.+|+|+|+|+|++|++.||.+|+.+.
T Consensus        76 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           76 DCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             GGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            68999998558999999999999999999999875

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.68  E-value=2.6e-08  Score=69.81  Aligned_cols=40  Identities=30%  Similarity=0.475  Sum_probs=34.7

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..+.|+|+|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus        63 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~  102 (113)
T 1pls_A           63 GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKC  102 (113)
T ss_dssp             CCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4456899999944699999999999999999999988754

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=98.68  E-value=1.8e-08  Score=75.80  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=34.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++|+|.|++ ++++|+|+|++++|++.||.+|+.++.
T Consensus        74 ~~~~~~F~I~t-~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           74 TKRKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             CCCCCEEEEEe-CCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            45679999998 789999999999999999999998764

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=98.67  E-value=2.1e-08  Score=71.67  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+++++|.|++ ++|+|+|+|+|++|++.||.+|+.++..
T Consensus        75 ~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           75 QERVNCFCLVF-PFRTFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             SSSSSEEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            45679999999 8999999999999999999999998876

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.67  E-value=1.5e-08  Score=71.41  Aligned_cols=56  Identities=25%  Similarity=0.542  Sum_probs=41.6

Q ss_pred             CCCCCCCcc------ccccccc-ccCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE------IPIILVG-TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~-~~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      |.||+...+      |++.... +....+++|.|++ ++|+|+|+|++++|++.||.+|+.++.
T Consensus        37 L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~~l~~~~~   99 (115)
T 2cod_A           37 ISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVT-TQRTFVFRVEKEEERNDWISILLNALK   99 (115)
T ss_dssp             EEEEESSCCSSCCCEEETTTEEEEEEETTTEEEEEE-SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcccCCEEECCcceEEEeCCCCEEEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            356665543      3443322 2233479999998 899999999999999999999998774

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.67  E-value=1.7e-08  Score=74.16  Aligned_cols=57  Identities=11%  Similarity=0.200  Sum_probs=41.3

Q ss_pred             CCCCCCCc------cccccccccc----CCCcceEEEEeCCC-----------------------CeEEEEeCCHHHHHH
Q psy17773          1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLDN-----------------------KQWQFEAANSEERDD   47 (165)
Q Consensus         1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~~-----------------------rt~~fqa~se~E~~~   47 (165)
                      |.||++..      .|++..+.+.    ..++|||+|+++..                       ++|+|+|+|++|+++
T Consensus        35 L~yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~  114 (130)
T 1v88_A           35 LLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRC  114 (130)
T ss_dssp             EEEESCSSSCCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHH
T ss_pred             EEEECCCCCCCceEEEEcCCCEEEECCCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHH
Confidence            45777665      3455555443    23459999998433                       349999999999999


Q ss_pred             HHHHHHHHHH
Q psy17773         48 WIAAIQQQIL   57 (165)
Q Consensus        48 Wi~ai~~~i~   57 (165)
                      ||+||+.++.
T Consensus       115 Wi~ai~~a~~  124 (130)
T 1v88_A          115 WMDALELALK  124 (130)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.67  E-value=1.7e-08  Score=70.45  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=32.5

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ++++|.|+++..++|+|+|+|++|++.||.+|+.++.
T Consensus        67 ~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~  103 (109)
T 1wgq_A           67 ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             SSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            4699999984467899999999999999999998764

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=98.66  E-value=2.5e-08  Score=69.16  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=32.3

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      +.++|.|+++..++|+|+|+|++|++.||.+|+.++
T Consensus        73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            679999999446789999999999999999999875

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.65  E-value=2.5e-08  Score=75.10  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      +.++|+|+| ++|+|+|+|+|++||++||.+|+..+.
T Consensus        78 ~~~~F~I~t-~~r~~~f~A~s~ee~~eWi~aI~~v~~  113 (149)
T 1x1f_A           78 NCAKFTLVL-PKEEVQLKTENTESGEEWRGFILTVTE  113 (149)
T ss_dssp             CCCEEEEEC-SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEc-CCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            468999999 899999999999999999999998765

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=98.63  E-value=3.4e-08  Score=70.54  Aligned_cols=59  Identities=19%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             CCCCCCCcc------ccccccccc--------CCCcceEEEEe---CCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773          1 MSHYRNAAE------IPIILVGTQ--------DSDSFELLIVS---LDNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~~~--------~~~~~~F~ivt---~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      |.||+...+      ||+....+.        ..++++|+|++   ++.|+|+|+|+|++|++.||.+|+.++...
T Consensus        37 L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  112 (125)
T 1unq_A           37 FIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL  112 (125)
T ss_dssp             EEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence            356766553      566554431        35679999996   257899999999999999999999888653

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=98.62  E-value=3.1e-08  Score=71.04  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=33.1

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      +.++|+|+++..++|+|+|+|++|++.||.+|+.++.
T Consensus        84 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  120 (129)
T 1x05_A           84 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR  120 (129)
T ss_dssp             SCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            6799999994468899999999999999999998775

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.62  E-value=4.7e-08  Score=71.89  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++|+|++++ ++++|+|+|+|++||+.||.||..++.
T Consensus        73 ~~~k~~F~~v~-~~~ty~~~Adseee~~~WikAi~~A~~  110 (126)
T 1wi1_A           73 EGGRAFFNAVK-EGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ccCceEEEEec-CCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence            34679999998 788999999999999999999998774

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=98.62  E-value=4e-08  Score=70.09  Aligned_cols=38  Identities=13%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .++|+|+|+++..|+|+|+|+|++|++.||.+|+.++.
T Consensus        82 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           82 NRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             SSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            56799999984469999999999999999999987653

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=98.62  E-value=5.4e-08  Score=69.12  Aligned_cols=41  Identities=12%  Similarity=0.294  Sum_probs=36.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      ..++++|+|++++.++|+|+|+|++||++||.+|+.++...
T Consensus        63 ~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~~  103 (112)
T 3cxb_B           63 TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG  103 (112)
T ss_dssp             SSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence            45679999997578999999999999999999999887653

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.60  E-value=5.4e-08  Score=68.12  Aligned_cols=39  Identities=15%  Similarity=0.376  Sum_probs=34.4

Q ss_pred             CCcceEEEEeC-------CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSL-------DNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~-------~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++|+|+|+++       +.|+|+|+|+|++|++.||.+|+.++..
T Consensus        68 ~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  113 (118)
T 1v89_A           68 AGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             CCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             CCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            45799999983       7899999999999999999999988753

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=5.4e-08  Score=68.87  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=33.2

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .++|+|+|++++.|+|+|+|+|++|++.||.+|+.++
T Consensus        83 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           83 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             SSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            4579999987568999999999999999999999876

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.60  E-value=3.2e-08  Score=84.63  Aligned_cols=52  Identities=13%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             cccccccccc----CCCcceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773          9 EIPIILVGTQ----DSDSFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus         9 ~i~~~~~~~~----~~~~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      .|++..+.++    .+++|||+|+|+. .|+|+|||+|++||..||.+|++++..+.
T Consensus       345 ~~~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~  401 (407)
T 4h8s_A          345 IQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQIY  401 (407)
T ss_dssp             CBCSSCCEEEEECCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC-
T ss_pred             EEECCceEEEECCCCCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence            3456566553    6788999999943 36999999999999999999999886543

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=4.2e-08  Score=68.81  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++|+|+|++++.|+|+|+|+|++|++.||.+|+.++.
T Consensus        71 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           71 ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             CCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            356799999875679999999999999999999998764

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.59  E-value=4.8e-08  Score=71.22  Aligned_cols=38  Identities=18%  Similarity=0.429  Sum_probs=33.2

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .+++|||.|.+ +.|+|+|+|+|++|+++||.+|+.++.
T Consensus        83 ~~~~~~F~i~t-~~r~y~l~A~s~~e~~~Wi~al~~a~~  120 (126)
T 1v5p_A           83 PKTPFCFVINA-LSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEEEC-CCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            34569998887 899999999999999999999987653

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=98.58  E-value=5.5e-08  Score=68.91  Aligned_cols=39  Identities=13%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+.|+|+|+++..++|+|+|+|++|++.||.+|+.++..
T Consensus        72 ~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           72 GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             SSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            367999999844599999999999999999999988753

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.56  E-value=9.5e-08  Score=69.29  Aligned_cols=39  Identities=13%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++++|+|++++.|+|+|+|+|++|++.||.+|+.++.
T Consensus        76 ~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           76 RSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             CCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            345799999995569999999999999999999998764

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=98.56  E-value=7.3e-08  Score=68.42  Aligned_cols=58  Identities=14%  Similarity=0.322  Sum_probs=42.2

Q ss_pred             CCCCCCCc------cccccccccc----CCCcceEEEEeCC---------------------CCeEEEEeCCHHHHHHHH
Q psy17773          1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLD---------------------NKQWQFEAANSEERDDWI   49 (165)
Q Consensus         1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~---------------------~rt~~fqa~se~E~~~Wi   49 (165)
                      |.||+.+.      .|++..+.+.    ..++++|.|+++.                     .|+|+|+|+|++|++.||
T Consensus        33 L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi  112 (127)
T 1fgy_A           33 LYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWM  112 (127)
T ss_dssp             EEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHH
T ss_pred             EEEeCCCCCCCcceEEECCceEEEEccCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHH
Confidence            45676544      2344433332    4567999998732                     379999999999999999


Q ss_pred             HHHHHHHHH
Q psy17773         50 AAIQQQILS   58 (165)
Q Consensus        50 ~ai~~~i~~   58 (165)
                      .+|+.++..
T Consensus       113 ~al~~~i~~  121 (127)
T 1fgy_A          113 KSIKASISR  121 (127)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999988753

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=98.53  E-value=3.7e-08  Score=83.63  Aligned_cols=39  Identities=18%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             CCCcceEEEEeCCC--CeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDN--KQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~--rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+++|||+|+| |+  |+|+|||+|++||+.||.||+.++..
T Consensus       336 ~~r~~~F~i~t-~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~  376 (385)
T 2q13_A          336 EDRRYCFQITS-FDGKKSSILQAESKKDHEEWICTINNISKQ  376 (385)
T ss_dssp             TTCSSEEEEEC-TTSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred             cCCCceEEEEe-CCCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            56779999999 66  99999999999999999999987754

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=98.53  E-value=1.1e-07  Score=72.11  Aligned_cols=38  Identities=18%  Similarity=0.457  Sum_probs=34.2

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+.++|.|++ ++|+|+|+|+|++|+++||++|++.|..
T Consensus        85 ~~~~~f~i~t-~~rt~~l~A~s~~e~~~Wi~aL~~~i~~  122 (164)
T 2lul_A           85 QNKYPFQVVH-DANTLYIFAPSPQSRDLWVKKLKEEIKN  122 (164)
T ss_dssp             SSCSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             ccceeEEEec-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            4568999999 8999999999999999999999987754

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.51  E-value=7.7e-08  Score=68.82  Aligned_cols=38  Identities=21%  Similarity=0.467  Sum_probs=33.3

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      +.++|.|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus        88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  125 (129)
T 1x1g_A           88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG  125 (129)
T ss_dssp             CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred             CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            57999999944588999999999999999999987753

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=98.51  E-value=1.3e-07  Score=68.30  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=34.8

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++++|.|.++++++|.|||++++||..||.+|+.+|.
T Consensus        85 ~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           85 SSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            346799999986678999999999999999999999874

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.50  E-value=1.1e-07  Score=75.74  Aligned_cols=57  Identities=14%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             CCCCCCCcc------ccccccccc---CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE------IPIILVGTQ---DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~~~---~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      |.||+...+      |++..+.+.   ..++++|+|+| ++|+|+|+|+|++|++.||.+|+.++..
T Consensus        91 L~Yyk~~~~~~~~g~I~L~~~~~v~~~~~k~~~F~I~t-~~r~~~l~A~s~~e~~~Wv~aL~~~i~~  156 (228)
T 3tfm_A           91 LMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQVHSS  156 (228)
T ss_dssp             EEEESSTTCCSEEEEEEGGGCSEEEEETTTTSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCcceeEEEEcCCCEEeccCCCCCcEEEEEc-CCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            467777653      455444432   56789999998 8999999999999999999999998864

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=98.49  E-value=1.1e-07  Score=77.49  Aligned_cols=40  Identities=15%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      .++|+|+|+++++++|+|+|+|++|+++||.+|+.++...
T Consensus        87 kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A           87 KKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL  126 (263)
T ss_dssp             SCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            4689999998668999999999999999999999887654

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=98.47  E-value=1.3e-07  Score=69.60  Aligned_cols=37  Identities=19%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++|.|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus        84 ~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  120 (148)
T 1u5f_A           84 DCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD  120 (148)
T ss_dssp             GGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred             ccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            5999999933499999999999999999999988764

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.47  E-value=1.8e-07  Score=64.31  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=33.8

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++++|.|+++..|+|+|+|+|++|++.||.+|+.++.+
T Consensus        68 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~  106 (108)
T 1u5d_A           68 KKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKD  106 (108)
T ss_dssp             GGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            346999999833499999999999999999999998764

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=98.46  E-value=2.6e-07  Score=65.47  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=34.9

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+.++|+|++ ++|+|+|+|+|++|++.||.+|+.++..
T Consensus        75 ~~~~~F~i~~-~~r~~~l~a~s~~e~~~W~~al~~~i~~  112 (125)
T 1eaz_A           75 MRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVA  112 (125)
T ss_dssp             TCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEEEe-CCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            4689999998 8999999999999999999999998865

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=4.1e-07  Score=63.50  Aligned_cols=39  Identities=23%  Similarity=0.491  Sum_probs=34.6

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..++++|.|++ ++|+|+|+|+|++|++.||.+|+.++..
T Consensus        66 ~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~ai~~~~~~  104 (115)
T 2dn6_A           66 DGKKCLFLVKC-FDKTFEISASDKKKKQEWIQAIHSTIHL  104 (115)
T ss_dssp             TTCCSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEEe-CCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            34568999998 8999999999999999999999987754

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.43  E-value=2e-07  Score=65.33  Aligned_cols=37  Identities=14%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .+.++|.|++ +.|+|+|+|+|++|++.||.+|+.++.
T Consensus        75 ~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~i~  111 (117)
T 1v5u_A           75 DEKAFFDVKT-TRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             CTTTCEEEEE-SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEEC-CCceEEEECCCHHHHHHHHHHHHHHhc
Confidence            3458999998 899999999999999999999998764

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=98.43  E-value=2.9e-07  Score=70.20  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             ceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        23 ~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      |+|+|+| ++|+|+|+|+|++|+++||++|+.++.
T Consensus        99 ~~F~I~t-~~rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           99 YPFQVVY-DEGPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             EEEEEEE-TTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEe-CCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            8999999 889999999999999999999987664

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=98.42  E-value=1e-07  Score=68.83  Aligned_cols=39  Identities=18%  Similarity=0.377  Sum_probs=32.9

Q ss_pred             CCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++|+|+|+++.  .++|+|+|+|++|+++||.||+.++..
T Consensus        80 ~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~  120 (124)
T 2w2x_D           80 QKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK  120 (124)
T ss_dssp             TBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence            467999999843  478999999999999999999987754

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=98.41  E-value=2e-07  Score=67.01  Aligned_cols=39  Identities=18%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             CCcceEEEEeC-CC------------------CeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSL-DN------------------KQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~-~~------------------rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++|+|+|++. |.                  |+|+|+|+|++|++.||.+|+.++..
T Consensus        72 ~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A           72 ARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             CCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            46799999873 22                  47999999999999999999988754

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=98.25  E-value=5.8e-07  Score=73.31  Aligned_cols=39  Identities=15%  Similarity=0.331  Sum_probs=34.0

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..++|+|.|+| ++|+|+|+|+|++|++.||.+|+.++..
T Consensus        75 ~~~~~~F~I~t-~~rty~l~A~se~e~~~Wi~aL~~~~~~  113 (264)
T 1qqg_A           75 SKNKHLVALYT-RDEHFAIAADSEAEQDSWYQALLQLHNR  113 (264)
T ss_dssp             SSCSSEEEEEE-SSCEEEEECSSHHHHHHHHHHHHHHC--
T ss_pred             CCCCcEEEEEE-CCEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            44579999999 7999999999999999999999987754

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=98.22  E-value=1.1e-06  Score=74.11  Aligned_cols=65  Identities=14%  Similarity=0.267  Sum_probs=46.3

Q ss_pred             CCCCCCCc------cccccccccc----CCCcceEEEEeCC---------------------CCeEEEEeCCHHHHHHHH
Q psy17773          1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLD---------------------NKQWQFEAANSEERDDWI   49 (165)
Q Consensus         1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~---------------------~rt~~fqa~se~E~~~Wi   49 (165)
                      |.||+.+.      .|++..+.+.    ..+++||+|.++.                     .|+|+|+|+|++|++.||
T Consensus       241 L~Yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi  320 (347)
T 2r09_A          241 LYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWM  320 (347)
T ss_dssp             EEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHH
T ss_pred             EEEEcCCCccCCcEEEEcCCeEEEEccCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHH
Confidence            45776644      2444444432    4678999999842                     489999999999999999


Q ss_pred             HHHHHHHHHhHHHHHH
Q psy17773         50 AAIQQQILSSLQTASL   65 (165)
Q Consensus        50 ~ai~~~i~~~l~~~~l   65 (165)
                      .+|+.++...-..+.+
T Consensus       321 ~aI~~ai~~~~~~~~l  336 (347)
T 2r09_A          321 KSIKASISRDPFYDML  336 (347)
T ss_dssp             HHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHH
Confidence            9999988754333333

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=98.18  E-value=2.5e-06  Score=62.59  Aligned_cols=50  Identities=10%  Similarity=0.104  Sum_probs=39.7

Q ss_pred             cccccccccc----CCCcceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVGTQ----DSDSFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         9 ~i~~~~~~~~----~~~~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      -||+.-+.+.    ..++++|+|.++ .+..|.|||+|++++..|+.+|+.++..
T Consensus        59 ~i~L~g~~V~~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~  113 (126)
T 2dtc_A           59 KVSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKS  113 (126)
T ss_dssp             EEECTTCEEECCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred             eEEeCCCEEEecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence            3455555553    346799999985 4899999999999999999999988753

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.16  E-value=1.2e-06  Score=74.98  Aligned_cols=101  Identities=15%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             Cccccccccccc----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHH---------HH-----H
Q psy17773          7 AAEIPIILVGTQ----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASL---------QS-----I   68 (165)
Q Consensus         7 ~~~i~~~~~~~~----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l---------~~-----l   68 (165)
                      ...||+....+.    .+.+|.|.|.+ +.++|.|+|.|++|++.|+++|+++|......+..         +.     +
T Consensus       284 k~~i~L~~l~v~~~~~~~~~~~f~i~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~~~~~~~f~~~~e~~~~~~~~~  362 (434)
T 3mpx_A          284 KNTLAVANMKVSRPVMEKVPYALKIET-SESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSL  362 (434)
T ss_dssp             EEEEEC-----CCCCCTTSCSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHC---------------------------
T ss_pred             EEEEEcCCcEEEecCCCCCCeeEEEec-CCeEEEEecCCHHHHHHHHHHHHHHHHHHHhhhcccccCCccchhhcccCcc
Confidence            334454444442    33479999987 88999999999999999999999999765331110         00     0


Q ss_pred             ------HhhCCCCCCCCCCCCCCC----CeeeecccceeeeccccccccC
Q psy17773         69 ------RSRVPGNLTCADCAEAGP----TWASLNLGLLLCIQCCGVHRCL  108 (165)
Q Consensus        69 ------~~~~~~N~~CaDCg~~~p----~w~s~n~Gv~lC~~Cs~iHR~l  108 (165)
                            .........|..|+.+-.    ..-+-+-|-.+|..|+.-+..+
T Consensus       363 ~~~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~  412 (434)
T 3mpx_A          363 GERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL  412 (434)
T ss_dssp             --------------------------------------------------
T ss_pred             ccCCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeC
Confidence                  000223457999998643    2335567889999999855444

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=98.13  E-value=2.7e-06  Score=66.98  Aligned_cols=38  Identities=18%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      +.|+|.|+++..|+|+|+|++++|++.||.+|+.+|..
T Consensus       172 k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~  209 (211)
T 1u5e_A          172 KDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD  209 (211)
T ss_dssp             GGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            46999999943599999999999999999999988753

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=98.13  E-value=2.3e-06  Score=62.66  Aligned_cols=54  Identities=19%  Similarity=0.377  Sum_probs=39.9

Q ss_pred             CCCCCCCcc------ccccccccc------CCCcceEEEEeCCCC-------eEEEEeCCHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE------IPIILVGTQ------DSDSFELLIVSLDNK-------QWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus         1 ~s~y~~~~~------i~~~~~~~~------~~~~~~F~ivt~~~r-------t~~fqa~se~E~~~Wi~ai~~   54 (165)
                      |+||+...+      ||+....+.      ..++|+|+|.++.+|       +|.|.|+|.+|+++|+++|..
T Consensus        42 L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r  114 (125)
T 1dyn_A           42 LSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR  114 (125)
T ss_dssp             EEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred             eeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence            467766553      455444442      367799999984444       999999999999999999944

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=98.08  E-value=3.1e-06  Score=61.21  Aligned_cols=36  Identities=14%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             CcceEEEEeCC------CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLD------NKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        21 ~~~~F~ivt~~------~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      +.+.|+|.+.+      +++|+|+|+|++||++||.+|+.+.
T Consensus        76 ~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           76 SDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             -CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            67899998743      2599999999999999999998764

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=97.98  E-value=7.5e-06  Score=70.00  Aligned_cols=37  Identities=19%  Similarity=0.532  Sum_probs=34.2

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      +|+|+|+| ++|+|+|+|+|++|+++||.||+.+|...
T Consensus       338 ~~~F~I~t-~~rty~l~A~s~~e~~~Wi~aL~~~i~~p  374 (386)
T 3lju_X          338 PHGITIVT-PDRKFLFACETESDQREWVAAFQKAVDRP  374 (386)
T ss_dssp             CEEEEEEC-SSCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            59999999 88999999999999999999999988654

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=97.94  E-value=6.3e-06  Score=67.91  Aligned_cols=39  Identities=18%  Similarity=0.399  Sum_probs=35.0

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++++|.|.++++++|.|||++++||..||.+|..++.
T Consensus        86 ~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~  124 (279)
T 3a8n_A           86 PKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA  124 (279)
T ss_dssp             SSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            456789999987789999999999999999999998775

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1.2e-05  Score=59.67  Aligned_cols=55  Identities=11%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             CCCCCCCcc--------ccccccccc-----CCCcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAE--------IPIILVGTQ-----DSDSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         1 ~s~y~~~~~--------i~~~~~~~~-----~~~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      |+||+++.+        |++..|.+.     ...+|.|.+..|   +.++|.|.|+||+++..||+|++.+
T Consensus        40 L~YyK~kee~~~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlA  110 (137)
T 2ys3_A           40 LSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA  110 (137)
T ss_dssp             EEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEECCchhccCCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence            468866666        333334443     256788877763   2399999999999999999999864

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=97.75  E-value=3e-05  Score=55.71  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=31.8

Q ss_pred             CcceEEEEe-----CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVS-----LDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt-----~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .++.|+|++     ++.++++|.|+|++|++.||.+|+..|.
T Consensus        74 ~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           74 IPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             GGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             CCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            357899987     2469999999999999999999998764

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.71  E-value=4.4e-05  Score=57.53  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=33.6

Q ss_pred             CCCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++.|.|.|.++.  .++|.|.|+|.+|+.+||.+|+.++..
T Consensus       108 ~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~  149 (150)
T 2fjl_A          108 NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  149 (150)
T ss_dssp             SSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            4578999998732  459999999999999999999987653

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=97.64  E-value=5.9e-05  Score=60.66  Aligned_cols=38  Identities=5%  Similarity=0.114  Sum_probs=31.8

Q ss_pred             CCCcceEEEEeCC-----CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-----NKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~-----~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .+++|||.|+++.     .++|+|+|+|++|+..||.||+.+.
T Consensus       233 ~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          233 APTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             CSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            4567999999732     2579999999999999999998765

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.63  E-value=5.3e-05  Score=55.88  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=46.0

Q ss_pred             CCCCCCCccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         1 ~s~y~~~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ++.|+....+|+.--.+.     ++.+++|+|..+..+++.+.|.|.+|++.||++|+.+|..
T Consensus        65 ~~~f~~kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~  127 (132)
T 1v61_A           65 MSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS  127 (132)
T ss_dssp             SSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred             CceEEEEEEEecceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            356777778888766664     3457999998633489999999999999999999988753

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=97.62  E-value=0.00011  Score=52.56  Aligned_cols=39  Identities=10%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      -++.|.|.+ +.++|.|+|++++|+.+||++|++++.+.+
T Consensus        72 ~~n~f~i~~-~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~  110 (113)
T 1zc3_B           72 MKDMFKLLM-FPESRIFQAENAKIKREWLEVLEETKRALS  110 (113)
T ss_dssp             BSSEEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEe-CCceEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence            368999998 789999999999999999999999886543

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.52  E-value=5e-05  Score=60.11  Aligned_cols=36  Identities=22%  Similarity=0.453  Sum_probs=32.8

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..++..|.|+| ++|+|+|+|++++|++.||.+||++
T Consensus       192 ~~~~~~f~iit-~~r~~~~~a~s~~e~~~Wi~~lq~~  227 (228)
T 3tfm_A          192 PDRPNSFVIIT-ANRVLHCNADTPEEMHHWITLLQRS  227 (228)
T ss_dssp             SSCTTEEEEEE-TTEEEEEECSSHHHHHHHHHHHCSC
T ss_pred             CCCCCcEEEEe-CCceEEEEcCCHHHHHHHHHHHhhc
Confidence            56778999999 8999999999999999999999864

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=0.00029  Score=51.51  Aligned_cols=33  Identities=24%  Similarity=0.533  Sum_probs=29.3

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      .+.+.|.|+| ++|+|.|.|+++ |+.+||.+|..
T Consensus        86 k~~~aF~l~T-~er~~~laAe~~-E~~~Wi~~ic~  118 (127)
T 2d9w_A           86 RDTSAFFLET-KERLYLLAAPAA-ERGDWVQAICL  118 (127)
T ss_dssp             SSCEEEEEEE-SSCEEEEEECHH-HHHHHHHHHHH
T ss_pred             CcceEEEEEe-CCcEEEEEeCcH-HHHHHHHHHHH
Confidence            3558999999 899999999975 89999999975

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=97.25  E-value=0.00097  Score=49.59  Aligned_cols=58  Identities=12%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             CCCCCccccccccccc----CCCcceEEEEeCC-C----CeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773          3 HYRNAAEIPIILVGTQ----DSDSFELLIVSLD-N----KQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus         3 ~y~~~~~i~~~~~~~~----~~~~~~F~ivt~~-~----rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      .|+....+|+..-.+.    ..-.|+|.|.+.. +    ++..|+|.|+.||..||++|+.+|.+..
T Consensus        59 ~Y~vr~~~~L~gm~V~~~e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~  125 (140)
T 3qwm_A           59 TYSFRQSFSLYGMQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ  125 (140)
T ss_dssp             CCCCEEEECCTTEEEEEECCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeeecceEEEcccCCCCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence            4555555555444332    3347899999732 2    6799999999999999999999997654

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=97.18  E-value=0.00038  Score=52.38  Aligned_cols=48  Identities=17%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             cccccccc-ccCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVG-TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         9 ~i~~~~~~-~~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      +||+.... +.......|.|.| |+|||+|.+. +.++++|++||+.++..
T Consensus        92 eIpls~~l~ve~k~~~~F~I~T-p~RtY~~~d~-~~~AqeWv~aI~~~~~~  140 (151)
T 1w1g_A           92 EIPWSQELRPEAKNFKTFFVHT-PNRTYYLMDP-SGNAHKWCRKIQEVWRQ  140 (151)
T ss_dssp             EECCCTTCEEEESSSSEEEEEE-TTEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred             eEecCCCeeEEEcCCCEEEEEC-CCceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence            45666432 2222234899999 8899999996 99999999999987754

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=96.98  E-value=0.001  Score=56.31  Aligned_cols=82  Identities=11%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             cceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHHHHH----HhhCCCCCCCCCCCCCC-----CCeeee
Q psy17773         22 SFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSI----RSRVPGNLTCADCAEAG-----PTWASL   91 (165)
Q Consensus        22 ~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l~~l----~~~~~~N~~CaDCg~~~-----p~w~s~   91 (165)
                      .+.|.|++. +.++|.|+|.|++|++.|+++|++++........-..-    .........|.-|+..-     -.+-+-
T Consensus       299 ~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~  378 (406)
T 2vrw_B          299 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCY  378 (406)
T ss_dssp             CEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEET
T ss_pred             ceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhhhccccCCCCCCccccCCCCCCCccccchhceeCCCCCCCC
Confidence            478999863 46799999999999999999999887653311100000    00133456788888753     223344


Q ss_pred             cccceeeecccc
Q psy17773         92 NLGLLLCIQCCG  103 (165)
Q Consensus        92 n~Gv~lC~~Cs~  103 (165)
                      ..|..+|..|+.
T Consensus       379 ~C~~~~h~~C~~  390 (406)
T 2vrw_B          379 RCRAPAHKECLG  390 (406)
T ss_dssp             TTCCEECGGGGG
T ss_pred             CCcCccchhhhh
Confidence            445555555544

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=96.81  E-value=0.002  Score=53.63  Aligned_cols=52  Identities=12%  Similarity=0.335  Sum_probs=38.2

Q ss_pred             Cccccccccccc--CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          7 AAEIPIILVGTQ--DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         7 ~~~i~~~~~~~~--~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ...||+....+.  .+++..|.|++.    +.++|.|+|.|++|+..|+++|+++|..
T Consensus       310 ~~~i~l~~~~v~~~~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~  367 (368)
T 1xcg_A          310 SPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  367 (368)
T ss_dssp             CSEEEGGGEEEEECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEccceeeecccCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            344555444332  345678888863    2579999999999999999999998865

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=96.42  E-value=0.0055  Score=49.79  Aligned_cols=49  Identities=22%  Similarity=0.301  Sum_probs=38.6

Q ss_pred             cccccccccc------CCCcceEEEEeCCCC-eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVGTQ------DSDSFELLIVSLDNK-QWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus         9 ~i~~~~~~~~------~~~~~~F~ivt~~~r-t~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .||+.++-+.      +.+.++|+|.++.++ +..+.|.++++...|+.+|+.+|.
T Consensus       207 ~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          207 HVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             EEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             ccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            3455555442      557899999996555 689999999999999999998773

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=96.40  E-value=0.0028  Score=56.40  Aligned_cols=82  Identities=13%  Similarity=0.257  Sum_probs=49.9

Q ss_pred             cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHhhCCCCCCCCCCCCCCCCeeeecccc
Q psy17773         22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS-----IRSRVPGNLTCADCAEAGPTWASLNLGL   95 (165)
Q Consensus        22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l~~-----l~~~~~~N~~CaDCg~~~p~w~s~n~Gv   95 (165)
                      ++.|.|++.. .++|.|+|.|++|++.|+++|+.++...........     ... ......|.-|+..-  |. +..--
T Consensus       471 ~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~~~~~~~H~F~~~~-~~~~t~C~~C~~~l--~g-l~~qg  546 (587)
T 3ky9_A          471 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFS-FEETTSCKACQMLL--RG-TFYQG  546 (587)
T ss_dssp             CEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHSCTTTTGGGCCEEEEC-CSSCCBCTTTCSBC--CS-SSCCE
T ss_pred             cceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhccccccccCCceeEEe-CCCCcccccccccc--cc-cccCC
Confidence            3789999832 289999999999999999999998865332110000     001 33456799998753  22 22234


Q ss_pred             eeeeccc-ccccc
Q psy17773         96 LLCIQCC-GVHRC  107 (165)
Q Consensus        96 ~lC~~Cs-~iHR~  107 (165)
                      +.|..|. .+|+.
T Consensus       547 ~~C~~C~~~vHk~  559 (587)
T 3ky9_A          547 YRCHRCRASAHKE  559 (587)
T ss_dssp             EEETTTCCEECSG
T ss_pred             cCCCCCCCccchh
Confidence            5677775 45654

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=96.35  E-value=0.0032  Score=51.38  Aligned_cols=41  Identities=20%  Similarity=0.405  Sum_probs=33.9

Q ss_pred             CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         19 DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        19 ~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      +.+++.|.|.+.    +.++|.|+|.|++|++.|+++|+.+|..+
T Consensus       266 ~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~  310 (311)
T 1nty_A          266 EGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER  310 (311)
T ss_dssp             TTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence            345678998862    35789999999999999999999988753

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=96.25  E-value=0.0046  Score=51.46  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=34.7

Q ss_pred             CCcceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773         20 SDSFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus        20 ~~~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      +.++.|+|... +.++|.|+|.|++|++.|+++|+.++.....
T Consensus       287 ~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  329 (353)
T 1kz7_A          287 GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ  329 (353)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            45688999862 3578999999999999999999998876543

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=96.22  E-value=0.0068  Score=51.28  Aligned_cols=50  Identities=12%  Similarity=0.347  Sum_probs=36.9

Q ss_pred             cccccccccc--CCCcceEEEEeCC----CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          9 EIPIILVGTQ--DSDSFELLIVSLD----NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         9 ~i~~~~~~~~--~~~~~~F~ivt~~----~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .|++....+.  .+....|.|++..    .++|.|+|.|.+|++.||++|++++..
T Consensus       354 ~i~l~~~~v~~~~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~  409 (418)
T 3t06_A          354 VLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  409 (418)
T ss_dssp             EEEGGGEEEEECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ceechhceeccccccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            3444433333  3456778888732    379999999999999999999988864

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=96.21  E-value=0.0036  Score=51.86  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ++.|.|.++..++|.|+|.|++|+..|+++|+.+..+
T Consensus       314 ~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~~  350 (354)
T 1dbh_A          314 KHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYR  350 (354)
T ss_dssp             CSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             CccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            5899998733589999999999999999999987653

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=96.04  E-value=0.0098  Score=49.67  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             eEEEEe-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773         24 ELLIVS-------LDNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus        24 ~F~ivt-------~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      -|+|+.       .|.++|.|+|.|++|+..|+++|++++....+
T Consensus       326 ~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~  370 (377)
T 1foe_A          326 VCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHR  370 (377)
T ss_dssp             EEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhh
Confidence            477761       25789999999999999999999998876443

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.04  E-value=0.011  Score=45.56  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             ccccccccccc------CCCcceEEEEeCCCC-eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773          8 AEIPIILVGTQ------DSDSFELLIVSLDNK-QWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus         8 ~~i~~~~~~~~------~~~~~~F~ivt~~~r-t~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .-||+.++-+.      +.+...|||.+++++ |-.++|.+..+.+.|+.+|+..|.
T Consensus       121 ~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          121 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             eeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            34777777663      557789999996655 779999999999999999998764

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=96.03  E-value=0.0045  Score=47.33  Aligned_cols=55  Identities=15%  Similarity=0.276  Sum_probs=38.6

Q ss_pred             CCCCCCCccc--------cccccccc-----CCCcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAEI--------PIILVGTQ-----DSDSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         1 ~s~y~~~~~i--------~~~~~~~~-----~~~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      |+||+++++.        ++.-|.+.     ...+|.+.+..|   ....+++.|++|+++.+||.|.+-+
T Consensus        78 LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLA  148 (173)
T 4f7h_A           78 ISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA  148 (173)
T ss_dssp             EEEESCGGGCSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEcCHhHhcCCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhh
Confidence            5789998873        22333332     445666665543   3568999999999999999999843

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=96.03  E-value=0.011  Score=45.33  Aligned_cols=37  Identities=30%  Similarity=0.527  Sum_probs=30.0

Q ss_pred             cceEEEEeCC---CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLD---NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        22 ~~~F~ivt~~---~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ...|.+++..   .+.|.|.|.|.+|+..||++|+.++..
T Consensus       134 ~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~  173 (185)
T 2lg1_A          134 EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINT  173 (185)
T ss_dssp             SSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            3456667522   479999999999999999999998864

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=95.90  E-value=0.0067  Score=50.02  Aligned_cols=35  Identities=11%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             cceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        22 ~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ++.|.|...   ++++|.|+|.|++|++.|+++|++++
T Consensus       308 ~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          308 KNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             SSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence            578999741   36899999999999999999999876

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=95.87  E-value=0.006  Score=46.23  Aligned_cols=55  Identities=16%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CCCCCCCccc---cc---cc--cccc-----CCCcceEEEEeC--C-CCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773          1 MSHYRNAAEI---PI---IL--VGTQ-----DSDSFELLIVSL--D-NKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus         1 ~s~y~~~~~i---~~---~~--~~~~-----~~~~~~F~ivt~--~-~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      |+||+++++.   |+   ++  |.+.     ...+|.|.+..|  + ...++|.|++|.+..+||.|.+-+
T Consensus        57 LsyYKSkEe~~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLA  127 (165)
T 4bbk_A           57 IAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILA  127 (165)
T ss_dssp             EEEESSGGGTTSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEcCHHHhcCCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhc
Confidence            5899998874   22   22  2222     456777777542  1 458999999999999999999853

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=95.78  E-value=0.0016  Score=56.26  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      +.+++|+|.+ +.++|.|+|.|++|+..|+++|+.++.....
T Consensus       326 ~~~~~F~i~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  366 (510)
T 3jzy_A          326 SDEPVFHISH-IDRVYTLRTDNINERTAWVQKIKAASEQYID  366 (510)
T ss_dssp             ------------------------------------------
T ss_pred             ccccceeeec-cceeEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence            4468999988 7899999999999999999999998876543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=95.73  E-value=0.01  Score=50.16  Aligned_cols=39  Identities=26%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             CCcceEEEEeCCCCeE---EEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQW---QFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~---~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+.++|+|.++..+++   .|.+++++|++.|+.||+.++..
T Consensus        68 ~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~  109 (446)
T 4ejn_A           68 PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG  109 (446)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             CCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence            4568999998445565   79999999999999999988753

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=95.72  E-value=0.0098  Score=49.47  Aligned_cols=51  Identities=20%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             cccccccccc---CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773          9 EIPIILVGTQ---DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus         9 ~i~~~~~~~~---~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      .||+....+.   ..+.+.|.|...    +.++|.|+|.|++|++.|+++|++++...
T Consensus       263 ~i~l~~~~v~~~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~  320 (354)
T 2rgn_B          263 SIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ  320 (354)
T ss_dssp             EEEGGGEEEEESGGGCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccceeeeeccCCCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            3444443332   344678988752    13799999999999999999999988664

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=95.71  E-value=0.023  Score=48.11  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773         22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus        22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      ++.|.|.+.. .++|.|+|.|++|+..|+++|+.++....
T Consensus       327 ~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~  366 (402)
T 2dfk_A          327 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQ  366 (402)
T ss_dssp             SSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            3689998732 57999999999999999999999876643

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=95.63  E-value=0.019  Score=46.50  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             CCCcceEEEEeCCCC------eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNK------QWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~r------t~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ...+|||.|.. +..      .++|-|++++++..||.||+.+..
T Consensus       197 aPt~~~F~ik~-~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~  240 (256)
T 3hk0_A          197 APTDHGLCIKP-NKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY  240 (256)
T ss_dssp             CSSSEEEEEEE-TTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEc-ccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            44579999986 322      599999999999999999987654

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=95.40  E-value=0.027  Score=46.74  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             CcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        21 ~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      +...|.+++.   +.+.|.|+|.|.+|+..||+.|++++..
T Consensus       332 ~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~  372 (377)
T 3p6a_A          332 DHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS  372 (377)
T ss_dssp             CTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence            3445555553   4579999999999999999999998864

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=95.37  E-value=0.051  Score=51.72  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=44.5

Q ss_pred             CCCCccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy17773          4 YRNAAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASL   65 (165)
Q Consensus         4 y~~~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l   65 (165)
                      |.....||+....+.     ..-++.|.|....+.+|.|+|.|++|++.||++|+....++.....+
T Consensus       488 y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~~~~r~~  554 (1049)
T 3ksy_A          488 YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERML  554 (1049)
T ss_dssp             CCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555556666655553     22358999987445699999999999999999999877655443333

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.36  E-value=0.025  Score=41.30  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cceEEEEeCCCCeEEEEeCC---------------HHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDNKQWQFEAAN---------------SEERDDWIAAIQQQIL   57 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~s---------------e~E~~~Wi~ai~~~i~   57 (165)
                      .+||+|+| .+.+|+.+++.               .+.++.|..||+++++
T Consensus        74 phcFEi~T-~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm  123 (129)
T 2d9z_A           74 PHCFEIIT-DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM  123 (129)
T ss_dssp             CCSEEEEC-SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEE-CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence            49999999 89999998743               6999999999998764

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=95.36  E-value=0.023  Score=48.77  Aligned_cols=39  Identities=8%  Similarity=0.135  Sum_probs=32.7

Q ss_pred             cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773         22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus        22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      ++.|.|.+.. .++|.|+|.|++|+..|+++|+.++....
T Consensus       404 ~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~  443 (466)
T 2pz1_A          404 KNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQ  443 (466)
T ss_dssp             CEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            4789998732 67999999999999999999999876543

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=95.35  E-value=0.024  Score=49.98  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=32.7

Q ss_pred             CCCcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         19 DSDSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        19 ~~~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      .++...|.+++.   +.++|.|+|.|.+|++.||+.|+++|..+
T Consensus       483 ~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~  526 (536)
T 3odw_A          483 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL  526 (536)
T ss_dssp             TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTS
T ss_pred             cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            334556667663   46799999999999999999999998753

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=95.16  E-value=0.026  Score=47.18  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=25.2

Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         32 NKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        32 ~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      .++|.|+|.|++|+..|+++|++++...
T Consensus       344 ~~~~~l~a~s~~ek~~W~~~i~~~i~~~  371 (385)
T 1txd_A          344 AQIYELVAQTVSEKTVWQDLICRMAASV  371 (385)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999888654

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=95.07  E-value=0.038  Score=39.76  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             CcceEEEEeCCC-CeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDN-KQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~-rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ...||.|+.... ++.+|.|+|++|+..|+.+|+.-+.
T Consensus        84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~  121 (131)
T 1mai_A           84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIH  121 (131)
T ss_dssp             GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence            468999999442 6999999999999999999986443

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=94.95  E-value=0.027  Score=41.37  Aligned_cols=39  Identities=15%  Similarity=0.331  Sum_probs=32.6

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .++.+.|.|.+...-.|+|+|.++.++..|++.|+..+.
T Consensus        92 PD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~  130 (136)
T 1v5m_A           92 PEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             CCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcC
Confidence            556799999884445999999999999999999987653

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=94.80  E-value=0.045  Score=44.89  Aligned_cols=39  Identities=8%  Similarity=0.157  Sum_probs=32.1

Q ss_pred             CCCcceEEEEeCC-----CCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-----NKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~-----~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .+.+|||.|.++.     ...++|-|++++++..||.||.-+..
T Consensus       223 aPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~  266 (281)
T 4gmv_A          223 APTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY  266 (281)
T ss_dssp             CSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence            5668999998622     24799999999999999999987654

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=94.66  E-value=0.02  Score=41.66  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=29.4

Q ss_pred             CcceEEEEeCCCCeEEEEeC---C--------HHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAA---N--------SEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~---s--------e~E~~~Wi~ai~~~i~   57 (165)
                      ..+||+|+| .+.+|+.+++   .        .+.++.|..||+++++
T Consensus        73 ~~hcFEi~T-~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm  119 (125)
T 2coa_A           73 NPHCFEIVT-ANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM  119 (125)
T ss_dssp             CCEEEEEEC-SSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             CCceEEEEe-CCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence            459999999 8999999974   1        2669999999998764

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=89.69  E-value=0.15  Score=30.67  Aligned_cols=39  Identities=26%  Similarity=0.604  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCCc
Q psy17773         73 PGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGAH  111 (165)
Q Consensus        73 ~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~~  111 (165)
                      .....|++|++. -|.|=.-.-|..||-.|.-.++..|++
T Consensus         2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence            356789999986 579998889999999999877766553

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=86.79  E-value=0.22  Score=29.39  Aligned_cols=35  Identities=29%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             CCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773         76 LTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA  110 (165)
Q Consensus        76 ~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~  110 (165)
                      ..|++|+.. -|.|=.-..|-.+|-.|.-..+..|+
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV   37 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred             CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence            579999986 57999998999999999976665544

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=85.36  E-value=0.22  Score=31.84  Aligned_cols=39  Identities=18%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773         72 VPGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA  110 (165)
Q Consensus        72 ~~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~  110 (165)
                      ......|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI   43 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence            5677899999986 57999888999999999977766554

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=83.56  E-value=0.35  Score=34.50  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             CCcceEEEEeCC-CCeEEE--EeCCHH-HHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLD-NKQWQF--EAANSE-ERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~-~rt~~f--qa~se~-E~~~Wi~ai~~~i~   57 (165)
                      ++...|+|-++. ...|.+  ||.|.+ .++.|+..|++.++
T Consensus        71 ~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~  112 (119)
T 1fho_A           71 EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQE  112 (119)
T ss_dssp             CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCH
T ss_pred             CCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHH
Confidence            456679987633 457788  999999 99999999987443

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=83.12  E-value=0.49  Score=30.46  Aligned_cols=39  Identities=28%  Similarity=0.549  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773         72 VPGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA  110 (165)
Q Consensus        72 ~~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~  110 (165)
                      ......|+.|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence            3456799999986 68999988999999999876666554

>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C

Probab=81.14  E-value=0.78  Score=35.93  Aligned_cols=33  Identities=30%  Similarity=0.718  Sum_probs=27.9

Q ss_pred             CCCCCCCCCCCCCCCCeeeecccceeeeccccc
Q psy17773         72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV  104 (165)
Q Consensus        72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i  104 (165)
                      .|.-..|+.||.++..+.+...|.++|..|..-
T Consensus       147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~  179 (244)
T 1u5k_A          147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAAL  179 (244)
T ss_dssp             CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSS
T ss_pred             CCCcCccccCCCCCCCcEecccCEEECcccCCC
Confidence            456678999999977788999999999999754

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=80.30  E-value=0.54  Score=33.41  Aligned_cols=38  Identities=26%  Similarity=0.600  Sum_probs=29.4

Q ss_pred             CCCCCCCCCCC-CCCeeeecccceeeeccccccccCCCc
Q psy17773         74 GNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGAH  111 (165)
Q Consensus        74 ~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~~  111 (165)
                      -...|++||+. -|.|=.-.-|-++|-.|.-.++..|.+
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n   42 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN   42 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred             CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence            35789999986 689998889999999998666544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	1e-21
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-05
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-04
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-04
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	7e-04
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	9e-04
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	0.001
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	0.001
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.001
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.001
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	0.002
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	0.002
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	0.002
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	0.002
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	0.003
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	0.004
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	0.004

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (203), Expect = 1e-21
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 9/75 (12%)

Query: 52  IQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAH 111
           + ++I+S +Q         R+ GN  C DC    PTW S NLG+L CI+C G+HR LG H
Sbjct: 1   LTKEIISEVQ---------RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVH 51

Query: 112 VSRVRSLELDEWPES 126
            SR++SL LD    S
Sbjct: 52  YSRMQSLTLDVLGTS 66

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 1/161 (0%)

Query: 5   RNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
           R+  E+ + ++G   S    L+   L       E   SE+    +    Q  L  ++  +
Sbjct: 1   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 60

Query: 65  LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
                                   +   +  L   Q   +       ++       D   
Sbjct: 61  GAPDAKFSGWADAVIFVFSLEDENSFQAVSRL-HGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
            S+PR++ +ARAR L +D+KRCSYYETCATYGLNVDRVFQ+
Sbjct: 120 ASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQE 160

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 122 EWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
              +   + I   + ++LA ++  C Y E  A     +  VF +
Sbjct: 134 RLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 177

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           R +    A+    D     Y+ET A    NV   F++
Sbjct: 130 RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 166

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 7e-04
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 27  IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
           + S D + ++F A +  E  DW+  I   +
Sbjct: 73  LTSQDRRTYEFTATSPAEARDWVDQISFLL 102

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 9e-04
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 31 DNKQWQFEAANSEERDDWIAAIQQQI 56
            + +   A    E D+WI  ++ ++
Sbjct: 72 PFRTFYLCAKTGVEADEWIKILRWKL 97

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 5/59 (8%), Positives = 18/59 (30%)

Query: 1   MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59
                  A + +  +   +       I     ++      N+++  +W+  + +   S 
Sbjct: 70  YQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSG 128

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 27  IVSLDNKQWQFEAANSEERDDWIAAIQQ 54
           +++ D+  +  +A++  ER +WI AI++
Sbjct: 87  VITKDDTHYYIQASSKAERAEWIEAIKK 114

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
            E  +     +     R +A+ +    Y E  A     V  VF+ 
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
           +++  E     I   +   +A ++    Y E  A     +  VF +
Sbjct: 128 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 122 EWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
            + E+   I  +        D K    + TCAT   NV  VF  
Sbjct: 143 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 186

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.002
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 31  DNKQWQFEAANSEERDDWIAAIQQQILS 58
            ++ +  +A + EE   WI A+   I++
Sbjct: 74  TSRTFYVQADSPEEMHSWIKAVSGAIVA 101

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 23  FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
               I + D + +QF AA+ ++ ++W+  ++  +
Sbjct: 172 CCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 205

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 7/30 (23%), Positives = 19/30 (63%)

Query: 27  IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
           +V  ++  ++  A + EE+++W+ +I+  I
Sbjct: 90  VVEGNHVVYRISAPSPEEKEEWMKSIKASI 119

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 23  FELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
           F         + +   A   E+   W+ A+ +
Sbjct: 73  FTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 104

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 23  FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
              ++   +  ++  E  +S ++  W+A IQ  +
Sbjct: 96  NTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 7/56 (12%), Positives = 25/56 (44%)

Query: 12  IILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
           +I +   ++    +  ++  + +  F+A + ++   WI  IQ+    + +   + +
Sbjct: 64  LIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTN 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	98.92
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	98.77
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	98.69
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	98.64
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	98.62
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	98.59
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	98.58
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.56
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	98.56
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	98.54
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	98.53
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	98.52
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	98.52
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.51
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	98.51
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.46
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	98.37
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	98.37
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	98.36
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	98.34
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1wi1a_	126	Calcium-dependent activator protein for secretion,	98.32
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	98.3
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	98.24
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.23
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	98.22
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	98.21
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	98.14
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.11
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	97.86
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.77
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	97.72
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.64
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	97.62
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.34
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.28
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	97.26
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	96.93
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	96.91
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	95.85
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	94.33
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	93.58
d1u5ka2	157	Recombinational repair protein RecO, C-terminal do	92.67
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	90.54
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	87.92
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	85.63
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	80.16

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-38  Score=232.09  Aligned_cols=99  Identities=31%  Similarity=0.584  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773         62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS  141 (165)
Q Consensus        62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n  141 (165)
                      +++|+.|++ .|||+.|||||+++|+|+|+|||||+|++|||+||.||+|||+|||++||.|++++|++| +.+||..+|
T Consensus         3 ~~~l~~l~~-~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~-~~~GN~~~n   80 (122)
T d1dcqa2           3 KEIISEVQR-MTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLA-KNIGNAGFN   80 (122)
T ss_dssp             HHHHHHHHH-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHH-HHSCHHHHH
T ss_pred             HHHHHHHHh-CCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHH-HHHhHHHHH
Confidence            467899999 999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCCCC-CCCCCCCCcc
Q psy17773        142 DLKRCSYYETC-ATYGLNVDRV  162 (165)
Q Consensus       142 ~~~e~~~~~~~-~~~~~~~~~~  162 (165)
                      ++||+++|+.. .+|....+..
T Consensus        81 ~~~ea~~~~~~~~kp~~~~~~~  102 (122)
T d1dcqa2          81 EIMECCLPSEDPVKPNPGSDMI  102 (122)
T ss_dssp             HHHTTTCCSSSCCSCCTTCCHH
T ss_pred             HHHHhhCCcccCcCCCCCccHH
Confidence            99999998753 5666665543

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6e-10  Score=75.61  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++.++|+|++ ++|+|+|+|+|++|+++||.+|+.+|..
T Consensus        61 ~~~~~~F~i~~-~~r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          61 QERVNCFCLVF-PFRTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             SSSSSEEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccc-CCeEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            45679999999 8899999999999999999999988753

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4e-09  Score=71.25  Aligned_cols=35  Identities=17%  Similarity=0.435  Sum_probs=32.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ..++|+|+|+| ++|+|+|+|+|++|++.||++|++
T Consensus        67 ~~~~~~f~i~t-~~r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          67 SKNKHLVALYT-RDEHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             SSCSSEEEEEE-SSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEe-CCeEEEEEcCCHHHHHHHHHHHHh
Confidence            45579999999 899999999999999999999975

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.2e-09  Score=73.67  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      ..++|+|.|++ ++++|+|+|+|++|+..||.+|+.++...
T Consensus        72 ~~r~~~F~i~~-~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~  111 (133)
T d2j59m1          72 TKRKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSNLN  111 (133)
T ss_dssp             CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHCCCC
T ss_pred             cccCceeEEec-CCCEEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            55679999998 88999999999999999999999887543

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=9.1e-09  Score=68.73  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .+++|+|.+++++.++|+|+|+|++|+++||.+|+.+.
T Consensus        56 ~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          56 PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             ccceecceeccccceeEEeeCCCHHHHHHHHHHHHHHh
Confidence            45579999998678999999999999999999999753

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.3e-08  Score=68.89  Aligned_cols=39  Identities=23%  Similarity=0.506  Sum_probs=35.2

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++.++|+|.+ ++|+|+|+|+|++|+..||.+|+.++..
T Consensus        55 ~~~~~~f~i~~-~~~~~~l~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          55 VQGDNKFEVVT-TQRTFVFRVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             EETTTEEEEEE-SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccceeEEEEc-CCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            66789999999 8899999999999999999999987743

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.1e-08  Score=65.83  Aligned_cols=37  Identities=11%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      .++.|+|.|.+ ++|+|+|+|+|++|++.||++|+.+.
T Consensus        62 ~~~~~~F~i~~-~~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          62 LDSGHVWKLQW-AKQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             CSSSEEEEEEE-TTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEEc-CCcEEEEECCCHHHHHHHHHHHHHhc
Confidence            45679999999 89999999999999999999999864

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.59  E-value=4e-08  Score=68.17  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=36.3

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      ..++++|.|+++++++|+|+|+|++|+..||.+|+.++..+
T Consensus        65 ~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~~~  105 (119)
T d1omwa2          65 IKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREA  105 (119)
T ss_dssp             SSSCEEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            66679999998678999999999999999999999887653

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.7e-08  Score=72.01  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=34.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+++|+|.|+++..+.|+|+|+|++|+++||++|++++..
T Consensus        92 ~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~~  131 (136)
T d1v5ma_          92 PEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             CCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4567999999844567999999999999999999998764

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=2.2e-08  Score=68.14  Aligned_cols=38  Identities=18%  Similarity=0.472  Sum_probs=33.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..+.++|.|+++.+++|+|+|+|++|+++|+.||+..|
T Consensus        73 ~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          73 GKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             TTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            34569999999667899999999999999999998765

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=3.6e-08  Score=66.32  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             CCCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..+.|+|.|+++.  .++|+|+|+|++|+.+||.+|++++..
T Consensus        59 ~~~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~~  100 (101)
T d2fjla1          59 NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  100 (101)
T ss_dssp             SSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             ccccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            4567999999732  478999999999999999999988753

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.8e-08  Score=72.13  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.9

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ....|+|+|+| ++|+|+|+|+|++|++.||++|+++|..
T Consensus        95 ~~~~~~F~I~t-~~rt~~l~A~s~eE~~~WI~aL~~~i~~  133 (169)
T d1btka_          95 ERFPYPFQVVY-DEGPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             HCCCEEEEEEE-TTCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             cccCcceEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34579999999 8999999999999999999999987753

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.9e-08  Score=69.10  Aligned_cols=42  Identities=14%  Similarity=0.361  Sum_probs=36.5

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      .+++|+|.|+++..|+|+|+|++++|++.||.+|+.++....
T Consensus        86 ~~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~~  127 (150)
T d1wg7a_          86 KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNF  127 (150)
T ss_dssp             SSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhh
Confidence            566799999984568999999999999999999998876544

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.9e-08  Score=69.22  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=33.4

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      +..++|.|++ ++++|+|+|+|++|+++|+.+|+.++.
T Consensus        70 ~~~~~F~i~~-~~~~~~f~Aes~~e~~~Wi~~I~~v~~  106 (136)
T d1x1fa1          70 KNCAKFTLVL-PKEEVQLKTENTESGEEWRGFILTVTE  106 (136)
T ss_dssp             SCCCEEEEEC-SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccceeeecC-CCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            4469999999 889999999999999999999998764

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.5e-08  Score=65.48  Aligned_cols=40  Identities=20%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+++|+|.|+++++++|+|+|+|++|+++||++|+.++.+
T Consensus        65 ~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~i~~  104 (106)
T d1u5da1          65 SKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKD  104 (106)
T ss_dssp             GGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            4556999999855789999999999999999999988754

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.3e-08  Score=67.70  Aligned_cols=37  Identities=22%  Similarity=0.513  Sum_probs=31.9

Q ss_pred             CCCcceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      .+++|||.|+++. .|+|+|+|+|++|+.+||.||++.
T Consensus        63 ~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          63 EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             CCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             cCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHhc
Confidence            6667999999733 479999999999999999999863

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=98.51  E-value=2.7e-08  Score=67.07  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=32.7

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      ..++++|.|+++.+++|.|+|+|++|+.+||++|+.|
T Consensus        70 ~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          70 KKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccCcceEeecccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            4566999999955789999999999999999999864

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=6e-08  Score=73.20  Aligned_cols=39  Identities=18%  Similarity=0.450  Sum_probs=34.3

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++|||.|+++..|+|+|+|+|++|++.||.+|+..|.+
T Consensus       169 ~~~~~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~i~~  207 (209)
T d1u5ea1         169 KKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD  207 (209)
T ss_dssp             TGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            456999999955789999999999999999999987753

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=98.37  E-value=2.7e-07  Score=63.58  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=35.4

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..++|+|.|++...++|+|+|+|++|+..||.+|+.++..
T Consensus        79 ~~~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~  118 (123)
T d1wjma_          79 RKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             SSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            5567999999866789999999999999999999988764

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=2.5e-07  Score=62.66  Aligned_cols=40  Identities=23%  Similarity=0.382  Sum_probs=34.9

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .+++++|+|+++..++|+|+|++++|+++||.+|+.++..
T Consensus        65 ~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a~~~  104 (109)
T d1wgqa_          65 NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVS  104 (109)
T ss_dssp             SCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred             cccceeeeeecccceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            5567999999855678999999999999999999988753

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.36  E-value=3e-07  Score=63.46  Aligned_cols=39  Identities=13%  Similarity=0.279  Sum_probs=34.2

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..+.++|.|+++..++|+|+|+|++|++.||.+|+.++.
T Consensus        81 ~~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          81 TKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             SSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             ccccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            455789999995568999999999999999999998764

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.4e-07  Score=60.92  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=35.0

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ....++|.|++ ++++|+|+|+|++|+.+|+.+|+.+|..
T Consensus        63 ~~~~~~f~i~~-~~~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          63 MMRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             HTCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEEe-CCEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            34568999998 8999999999999999999999998864

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.4e-08  Score=70.88  Aligned_cols=57  Identities=16%  Similarity=0.221  Sum_probs=40.5

Q ss_pred             CCCCCCc------ccccccccc-cCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773          2 SHYRNAA------EIPIILVGT-QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus         2 s~y~~~~------~i~~~~~~~-~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      .||+++.      .||+..+.. ...++++|.|+| |+|+|+|+|+ +.|+..||.+|+..+..+.
T Consensus        75 ~YYkd~~~~~~kG~I~L~~~~~v~~~~~~~F~I~t-~~Rty~l~a~-~~d~~~Wv~aI~~v~~~~~  138 (147)
T d1w1ha_          75 LYYVDPVNKVLKGEIPWSQELRPEAKNFKTFFVHT-PNRTYYLMDP-SGNAHKWCRKIQEVWRQRY  138 (147)
T ss_dssp             EEEEETTTTEEEEEECCCTTCEEEEEETTEEEEEC-SSCEEEEECT-TSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcccccceEEeccccccccccCceEEEec-CceEEEEEcC-hHHHHHHHHHHHHHHHHHh
Confidence            4665543      344443332 255578999999 8999999985 5689999999998776543

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.8e-07  Score=61.99  Aligned_cols=40  Identities=30%  Similarity=0.475  Sum_probs=35.1

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ..+.++|.|+++++++|+|+|+|++|+.+|+.+|+.++..
T Consensus        63 ~~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~  102 (113)
T d1plsa_          63 GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKC  102 (113)
T ss_dssp             CCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4456899999977899999999999999999999987754

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.7e-07  Score=63.20  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCCcceEEEEeCC-------CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-------NKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~-------~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..++|+|.|.++.       .|+|+|+|+|++|+.+||+||.+|.
T Consensus        63 ~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          63 MSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             TTCSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             ccccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence            4678999998732       3799999999999999999998764

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.8e-07  Score=63.14  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      +.+.|.|++ ++|+|+|+|+|++|+.+||++|+.++.
T Consensus        75 ~~~~~~i~~-~~r~~~f~A~s~~e~~~Wv~al~~a~~  110 (126)
T d1wi1a_          75 GRAFFNAVK-EGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             CSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cceeEEecc-CCeEEEEEECCHHHHHHHHHHHHHHHH
Confidence            346677777 899999999999999999999998764

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.9e-07  Score=62.81  Aligned_cols=40  Identities=15%  Similarity=0.392  Sum_probs=32.7

Q ss_pred             CCCcceEEEEeCC-------CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD-------NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~-------~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ....|+|+|.++.       .++|+|+|++++|+.+||++|++++..
T Consensus        67 ~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~  113 (118)
T d1v89a_          67 EAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             CCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             cCCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence            4446899998733       267999999999999999999987653

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.1e-07  Score=59.85  Aligned_cols=38  Identities=29%  Similarity=0.496  Sum_probs=32.7

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ....++|.++++..++|+|+|+|++|+.+||++|+.++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          66 SEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             --CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccCccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            34568999998678899999999999999999999876

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=3.8e-07  Score=63.24  Aligned_cols=37  Identities=19%  Similarity=0.447  Sum_probs=32.8

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ...++|.+.+ +.|+|+|+|+|++|+.+||++|++++.
T Consensus        84 ~~~~~~~~~~-~~r~~~l~Aes~~e~~~Wi~aL~~A~~  120 (126)
T d1v5pa_          84 KTPFCFVINA-LSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             SCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             cccceEEEcC-CCeeEEEECCCHHHHHHHHHHHHHHhc
Confidence            3458999888 899999999999999999999998764

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.9e-07  Score=59.62  Aligned_cols=38  Identities=13%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..++|+|.|+++..++|+|+|+|++|+.+||++|+.|.
T Consensus        69 ~~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          69 RGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             TSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            44568999998668899999999999999999998764

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=6.2e-07  Score=61.28  Aligned_cols=53  Identities=11%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             Cccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773          7 AAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus         7 ~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      ...+|+....+.     ....++|.|.+ +.++|.|+|+|++|+..||++|++++.+..
T Consensus        49 ~~~~~l~~~~v~~~~d~~~~~n~f~i~~-~~~~~~~~a~s~~eK~~W~~~l~~a~~~~~  106 (109)
T d1zc3b1          49 NALYPLDRLAVVNVKDNPPMKDMFKLLM-FPESRIFQAENAKIKREWLEVLEETKRALS  106 (109)
T ss_dssp             EEEEETTTCEEEEECCBTTBSSEEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEeccceEEEEeecccccceEEEEcc-CCCEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence            344555544442     33458999998 789999999999999999999999887643

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.7e-07  Score=61.78  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CCcceEEEEeCCCCeEEEEe-----------CCHHHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEA-----------ANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa-----------~se~E~~~Wi~ai~~~i~   57 (165)
                      .+.+||+|+| ++|+|+|.+           ++++++++|+++|++|++
T Consensus        65 ~~~~~F~I~T-~~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~~  112 (112)
T d2coaa1          65 TNPHCFEIVT-ANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM  112 (112)
T ss_dssp             SCCEEEEEEC-SSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             CCccEEEEEe-CCeEEEEecCCccccccccccChHHHHHHHHHHHHhhC
Confidence            3569999999 899999977           678889999999998763

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.7e-07  Score=62.41  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             EEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         35 WQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        35 ~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      |+|+|++++|++.||++|+.++..
T Consensus       102 ~~l~A~s~~e~~~Wi~al~~~i~~  125 (130)
T d1v88a_         102 LIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhc
Confidence            789999999999999999988753

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7.2e-07  Score=60.27  Aligned_cols=36  Identities=22%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773         20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ   55 (165)
Q Consensus        20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~   55 (165)
                      .+.++|.|++++.++|+|+|++++|++.||.||++.
T Consensus        80 ~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          80 VQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             CCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             cccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            345789999966889999999999999999999863

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.1e-06  Score=59.67  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      ..++|.+.+ ++|+|+|+|++++|+.+||.+|+.+|.
T Consensus        76 ~~~~~~~~~-~~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          76 EKAFFDVKT-TRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             TTTCEEEEE-SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             cceEEEeeC-CCcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            457898888 899999999999999999999998764

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1.1e-06  Score=62.27  Aligned_cols=52  Identities=13%  Similarity=0.261  Sum_probs=39.8

Q ss_pred             Cccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          7 AAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         7 ~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ...||+....+.     +..+|+|+|.++..++|+|+|.|++|++.||++|++.+.+
T Consensus        71 k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~i~~  127 (132)
T d1v61a_          71 QGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS  127 (132)
T ss_dssp             EEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred             eeecchhhccccccccccCccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            344555544442     4556899998844689999999999999999999987653

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1e-05  Score=54.49  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             CCCcceEEEEeCC---CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD---NKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt~~---~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .++.++|.|.+..   .++|+|+|+|++|++.||.||+.++..
T Consensus        68 ~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~  110 (118)
T d1unqa_          68 RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG  110 (118)
T ss_dssp             SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            4567899988522   246899999999999999999988754

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.2e-05  Score=55.47  Aligned_cols=41  Identities=12%  Similarity=0.430  Sum_probs=34.2

Q ss_pred             CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773         19 DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILSS   59 (165)
Q Consensus        19 ~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~~   59 (165)
                      ....++|.+++.    +.++|.|+|.|++|+..||++|+++|..+
T Consensus        96 ~~~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~nA  140 (140)
T d1xcga2          96 ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA  140 (140)
T ss_dssp             SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHHcC
Confidence            455788998752    25789999999999999999999998763

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.2e-05  Score=56.37  Aligned_cols=49  Identities=20%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             ccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773          8 AEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus         8 ~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..||+....+.     .+..++|.|.+++.+.|.|+|+|++|+..||++|++..
T Consensus        75 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~~eK~~W~~~l~~~~  128 (133)
T d1dbha2          75 EKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ  128 (133)
T ss_dssp             EEEESCSCEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeeecccccccccCCCcccccceeEEcCCCcEEEEEECCHHHHHHHHHHHHHHH
Confidence            34555544442     33468999988556789999999999999999998643

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.1e-05  Score=55.81  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773         22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL   60 (165)
Q Consensus        22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l   60 (165)
                      .+.|.+.+ ++++|.|+|+|++|+..||++|++++....
T Consensus        98 ~~~~~~~~-~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~~  135 (142)
T d1ki1b2          98 EPIFHISH-IDRVYTLRAESINERTAWVQKIKAASELYI  135 (142)
T ss_dssp             ---CEEEE-TTEEEECBCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEecC-CCEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            35777777 789999999999999999999999987654

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=3.6e-05  Score=52.36  Aligned_cols=28  Identities=21%  Similarity=0.606  Sum_probs=25.6

Q ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         31 DNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        31 ~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      +.++|+|+|+|++|+.+||.||+.+|..
T Consensus        94 ~~~~~~f~a~s~~e~~~Wi~aL~~~i~~  121 (127)
T d1fgya_          94 NHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            6789999999999999999999988753

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=9.9e-05  Score=50.68  Aligned_cols=40  Identities=20%  Similarity=0.442  Sum_probs=32.7

Q ss_pred             CCCcceEEEEe----CCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVS----LDNKQWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus        19 ~~~~~~F~ivt----~~~rt~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      ++..+.|.|.+    .+.+.|.|+|.|++|++.||++|+++|..
T Consensus        76 ~~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~e  119 (121)
T d1ntya2          76 EGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE  119 (121)
T ss_dssp             TTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            45578898853    24568999999999999999999988764

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.28  E-value=0.00026  Score=48.39  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=29.8

Q ss_pred             CCCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         19 DSDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        19 ~~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      .+.+..|.|.+.+  .+.|.|||.|++|++.||++|+++..
T Consensus        73 ~d~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          73 TDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             C-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            4455667776522  24799999999999999999998764

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.00027  Score=50.92  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             cceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus        22 ~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      +++|.|+.+ .+++|.|+|.|++|+..||++|++++.
T Consensus        97 ~~~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2          97 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERK  133 (162)
T ss_dssp             SSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            468999852 367899999999999999999998754

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00064  Score=48.42  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CCcceEEEEe-CCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773         20 SDSFELLIVS-LDNKQWQFEAANSEERDDWIAAIQQQILSSLQ   61 (165)
Q Consensus        20 ~~~~~F~ivt-~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~   61 (165)
                      .+.+.|.+.. .+..+|.|+|.|++|++.||++|++++....+
T Consensus        90 ~~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~~q~~  132 (147)
T d1kz7a2          90 GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ  132 (147)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence            3345555542 25779999999999999999999998866543

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.00049  Score=46.92  Aligned_cols=33  Identities=12%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             cceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQ   54 (165)
Q Consensus        22 ~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~   54 (165)
                      ..||.|+.. ..|++.|.|+|++|+..|+.+|+.
T Consensus        83 ~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~  116 (119)
T d1maia_          83 DRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRK  116 (119)
T ss_dssp             GGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            468999842 468999999999999999999975

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0071  Score=40.76  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=43.2

Q ss_pred             CCCccccccccccc------CCCcceEEEEeCCCC-eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773          5 RNAAEIPIILVGTQ------DSDSFELLIVSLDNK-QWQFEAANSEERDDWIAAIQQQIL   57 (165)
Q Consensus         5 ~~~~~i~~~~~~~~------~~~~~~F~ivt~~~r-t~~fqa~se~E~~~Wi~ai~~~i~   57 (165)
                      +....||+.++-+.      +...-.|||-||++| +-.+.|.++.+.+.|-.+|+.+|.
T Consensus        45 ~d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          45 SEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             CSCEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             cccceeeeeeEEeeecccCCCCcccEEEEECCCCCceEEEEcCCHHHHHHHHHHHHHhhc
Confidence            44457888888773      556678999997766 779999999999999999998764

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.33  E-value=0.009  Score=41.14  Aligned_cols=56  Identities=11%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             CCCCCccccccccccc--CCCcceEEEEeC-CCC-----eEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773          3 HYRNAAEIPIILVGTQ--DSDSFELLIVSL-DNK-----QWQFEAANSEERDDWIAAIQQQILS   58 (165)
Q Consensus         3 ~y~~~~~i~~~~~~~~--~~~~~~F~ivt~-~~r-----t~~fqa~se~E~~~Wi~ai~~~i~~   58 (165)
                      .|.-...|++....+.  ..+...|+|-+. ++.     ++.++|.|+++++.|+.+|.+++..
T Consensus        50 ~y~~K~~i~l~~~~v~e~~gd~~~F~i~~~~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~  113 (119)
T d1fhoa_          50 SYTHYSSIRLDKYNIRQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEK  113 (119)
T ss_dssp             CCSSCCEEESSSCEEEEECTTCCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHH
T ss_pred             eEEEecEEECCceEEEEcCCCCcEEEEEeCCCCCCcceEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            4555566666655553  334557777642 121     5778889999999999999876654

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.58  E-value=0.13  Score=35.05  Aligned_cols=67  Identities=18%  Similarity=0.258  Sum_probs=43.0

Q ss_pred             eCCHHHHHHHHHHHHHHHHHhH-H-------HHHHHHHHh--hCCCCCCCCCCCCC-C----CCeeeecccceeeecccc
Q psy17773         39 AANSEERDDWIAAIQQQILSSL-Q-------TASLQSIRS--RVPGNLTCADCAEA-G----PTWASLNLGLLLCIQCCG  103 (165)
Q Consensus        39 a~se~E~~~Wi~ai~~~i~~~l-~-------~~~l~~l~~--~~~~N~~CaDCg~~-~----p~w~s~n~Gv~lC~~Cs~  103 (165)
                      .-|++|+..|+++|+.+..... .       ...+..++.  ...+.+.|+-|+.+ .    ....+.+-|-.+|..|+.
T Consensus         2 ~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~   81 (124)
T d1zbdb_           2 ELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV   81 (124)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcCcccCCcccCCCCCCCcCccCCcccccCCCC
Confidence            3589999999999998754321 1       112222222  25677789999975 2    233466778888888875


Q ss_pred             cc
Q psy17773        104 VH  105 (165)
Q Consensus       104 iH  105 (165)
                      .+
T Consensus        82 ~~   83 (124)
T d1zbdb_          82 ET   83 (124)
T ss_dssp             EC
T ss_pred             Cc
Confidence            43

>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.67  E-value=0.028  Score=39.72  Aligned_cols=32  Identities=31%  Similarity=0.722  Sum_probs=29.7

Q ss_pred             CCCCCCCCCCCCCCCCeeeecccceeeecccc
Q psy17773         72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCG  103 (165)
Q Consensus        72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~  103 (165)
                      .|.-..|+.||.+++.|.+..-|.++|..|.+
T Consensus        67 ~P~l~~C~~cg~~~~~~f~~~~Gg~~C~~c~~   98 (157)
T d1u5ka2          67 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAA   98 (157)
T ss_dssp             CCCCSBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred             CCChhhHhcCCCCCCCcccccCCeeECCCCCC
Confidence            67888999999999999999999999999975

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.54  E-value=0.073  Score=29.53  Aligned_cols=35  Identities=29%  Similarity=0.668  Sum_probs=30.2

Q ss_pred             CCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773         76 LTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA  110 (165)
Q Consensus        76 ~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~  110 (165)
                      +.|..||.. -|.|=.-.-|-.+|-.|.-.+|..|.
T Consensus         3 r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           3 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCC
T ss_pred             CCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCC
Confidence            679999986 68999888899999999988887665

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.34  Score=33.20  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=29.2

Q ss_pred             cceEEEEeCCC----CeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773         22 SFELLIVSLDN----KQWQFEAANSEERDDWIAAIQQQI   56 (165)
Q Consensus        22 ~~~F~ivt~~~----rt~~fqa~se~E~~~Wi~ai~~~i   56 (165)
                      ..||.|+.+++    ++.+|-|.++++.+.|+..|+.-+
T Consensus        86 ~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~  124 (131)
T d2zkmx3          86 LKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALV  124 (131)
T ss_dssp             GTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            35999998653    577899999999999999997644

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.078  Score=28.63  Aligned_cols=30  Identities=17%  Similarity=0.444  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCCC-CCCeeeecccceeeeccc
Q psy17773         73 PGNLTCADCAEA-GPTWASLNLGLLLCIQCC  102 (165)
Q Consensus        73 ~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs  102 (165)
                      +.-..|-+||.+ .-+|.+.+|+--+|.+|.
T Consensus         3 ~dy~~C~eCg~~F~DSYL~~~Fd~~vCD~CR   33 (36)
T d1d4ua2           3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCR   33 (36)
T ss_dssp             CCCEECTTTCCEESCSSSTTTTSCCCCTTTC
T ss_pred             ccHHHHHHhCcHHHHHHHHHcCCchhccccc
Confidence            445689999997 568999999999999995

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.16  E-value=0.69  Score=26.56  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CCCCCCCCCCCCCCee-eecccceeeecccccc
Q psy17773         74 GNLTCADCAEAGPTWA-SLNLGLLLCIQCCGVH  105 (165)
Q Consensus        74 ~N~~CaDCg~~~p~w~-s~n~Gv~lC~~Cs~iH  105 (165)
                      ....|.+||+.+  .+ ...-|-.+|..|.-|-
T Consensus         4 ~~~~Cp~Cgs~~--iv~D~~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           4 KQKVCPACESAE--LIYDPERGEIVCAKCGYVI   34 (50)
T ss_dssp             SCCSCTTTSCCC--EEEETTTTEEEESSSCCBC
T ss_pred             ccccCcCCCCCc--EEEECCCCeEecccCCcEe
Confidence            467899999865  22 2355999999998754